id sid tid token lemma pos cord-306414-2dv3qced 1 1 key key NN cord-306414-2dv3qced 1 2 : : : cord-306414-2dv3qced 2 1 cord-306414 cord-306414 JJ cord-306414-2dv3qced 2 2 - - HYPH cord-306414-2dv3qced 2 3 2dv3qced 2dv3qced JJ cord-306414-2dv3qced 2 4 authors author NNS cord-306414-2dv3qced 2 5 : : : cord-306414-2dv3qced 2 6 Gutierrez Gutierrez NNP cord-306414-2dv3qced 2 7 , , , cord-306414-2dv3qced 2 8 Lucas Lucas NNP cord-306414-2dv3qced 2 9 ; ; : cord-306414-2dv3qced 2 10 Beckford Beckford NNP cord-306414-2dv3qced 2 11 , , , cord-306414-2dv3qced 2 12 John John NNP cord-306414-2dv3qced 2 13 ; ; : cord-306414-2dv3qced 2 14 Alachkar Alachkar NNP cord-306414-2dv3qced 2 15 , , , cord-306414-2dv3qced 2 16 Houda Houda NNP cord-306414-2dv3qced 2 17 title title NN cord-306414-2dv3qced 2 18 : : : cord-306414-2dv3qced 2 19 Deciphering decipher VBG cord-306414-2dv3qced 2 20 the the DT cord-306414-2dv3qced 2 21 TCR TCR NNP cord-306414-2dv3qced 2 22 Repertoire repertoire NN cord-306414-2dv3qced 2 23 to to TO cord-306414-2dv3qced 2 24 Solve solve VB cord-306414-2dv3qced 2 25 the the DT cord-306414-2dv3qced 2 26 COVID-19 COVID-19 NNP cord-306414-2dv3qced 2 27 Mystery Mystery NNP cord-306414-2dv3qced 2 28 date date NN cord-306414-2dv3qced 2 29 : : : cord-306414-2dv3qced 2 30 2020 2020 CD cord-306414-2dv3qced 2 31 - - HYPH cord-306414-2dv3qced 2 32 06 06 CD cord-306414-2dv3qced 2 33 - - SYM cord-306414-2dv3qced 2 34 20 20 CD cord-306414-2dv3qced 2 35 journal journal NN cord-306414-2dv3qced 2 36 : : : cord-306414-2dv3qced 3 1 Trends Trends NNPS cord-306414-2dv3qced 3 2 Pharmacol Pharmacol NNP cord-306414-2dv3qced 3 3 Sci Sci NNP cord-306414-2dv3qced 3 4 DOI DOI NNP cord-306414-2dv3qced 3 5 : : : cord-306414-2dv3qced 4 1 10.1016/ 10.1016/ CD cord-306414-2dv3qced 5 1 j.tips.2020.06.001 j.tips.2020.06.001 XX cord-306414-2dv3qced 6 1 sha sha NNP cord-306414-2dv3qced 6 2 : : : cord-306414-2dv3qced 7 1 ec1c38f0a33606901fa1ce7c1a231f5fde1e1629 ec1c38f0a33606901fa1ce7c1a231f5fde1e1629 NNP cord-306414-2dv3qced 7 2 doc_id doc_id NNP cord-306414-2dv3qced 7 3 : : : cord-306414-2dv3qced 7 4 306414 306414 CD cord-306414-2dv3qced 7 5 cord_uid cord_uid NN cord-306414-2dv3qced 7 6 : : : cord-306414-2dv3qced 8 1 2dv3qced 2dv3qced NNP cord-306414-2dv3qced 9 1 The the DT cord-306414-2dv3qced 9 2 severe severe JJ cord-306414-2dv3qced 9 3 acute acute JJ cord-306414-2dv3qced 9 4 respiratory respiratory JJ cord-306414-2dv3qced 9 5 syndrome syndrome NN cord-306414-2dv3qced 9 6 coronavirus coronavirus NN cord-306414-2dv3qced 9 7 2 2 CD cord-306414-2dv3qced 10 1 ( ( -LRB- cord-306414-2dv3qced 10 2 SARS SARS NNP cord-306414-2dv3qced 10 3 - - HYPH cord-306414-2dv3qced 10 4 CoV-2 CoV-2 NNP cord-306414-2dv3qced 10 5 ) ) -RRB- cord-306414-2dv3qced 10 6 has have VBZ cord-306414-2dv3qced 10 7 infected infect VBN cord-306414-2dv3qced 10 8 several several JJ cord-306414-2dv3qced 10 9 millions million NNS cord-306414-2dv3qced 10 10 and and CC cord-306414-2dv3qced 10 11 killed kill VBD cord-306414-2dv3qced 10 12 more more JJR cord-306414-2dv3qced 10 13 than than IN cord-306414-2dv3qced 10 14 quarter quarter NN cord-306414-2dv3qced 10 15 of of IN cord-306414-2dv3qced 10 16 a a DT cord-306414-2dv3qced 10 17 million million CD cord-306414-2dv3qced 10 18 worldwide worldwide RB cord-306414-2dv3qced 10 19 to to IN cord-306414-2dv3qced 10 20 date date NN cord-306414-2dv3qced 10 21 . . . cord-306414-2dv3qced 11 1 Important important JJ cord-306414-2dv3qced 11 2 questions question NNS cord-306414-2dv3qced 11 3 have have VBP cord-306414-2dv3qced 11 4 remained remain VBN cord-306414-2dv3qced 11 5 unanswered unanswered JJ cord-306414-2dv3qced 11 6 : : : cord-306414-2dv3qced 11 7 why why WRB cord-306414-2dv3qced 11 8 some some DT cord-306414-2dv3qced 11 9 patients patient NNS cord-306414-2dv3qced 11 10 develop develop VBP cord-306414-2dv3qced 11 11 severe severe JJ cord-306414-2dv3qced 11 12 disease disease NN cord-306414-2dv3qced 11 13 , , , cord-306414-2dv3qced 11 14 while while IN cord-306414-2dv3qced 11 15 others other NNS cord-306414-2dv3qced 11 16 do do VBP cord-306414-2dv3qced 11 17 not not RB cord-306414-2dv3qced 11 18 ; ; : cord-306414-2dv3qced 11 19 and and CC cord-306414-2dv3qced 11 20 what what WDT cord-306414-2dv3qced 11 21 roles role NNS cord-306414-2dv3qced 11 22 do do VBP cord-306414-2dv3qced 11 23 genetic genetic JJ cord-306414-2dv3qced 11 24 variabilities variability NNS cord-306414-2dv3qced 11 25 play play VB cord-306414-2dv3qced 11 26 in in IN cord-306414-2dv3qced 11 27 the the DT cord-306414-2dv3qced 11 28 individual individual JJ cord-306414-2dv3qced 11 29 immune immune JJ cord-306414-2dv3qced 11 30 response response NN cord-306414-2dv3qced 11 31 to to IN cord-306414-2dv3qced 11 32 this this DT cord-306414-2dv3qced 11 33 viral viral JJ cord-306414-2dv3qced 11 34 infection infection NN cord-306414-2dv3qced 11 35 . . . cord-306414-2dv3qced 12 1 Here here RB cord-306414-2dv3qced 12 2 , , , cord-306414-2dv3qced 12 3 we -PRON- PRP cord-306414-2dv3qced 12 4 discuss discuss VBP cord-306414-2dv3qced 12 5 the the DT cord-306414-2dv3qced 12 6 critical critical JJ cord-306414-2dv3qced 12 7 role role NN cord-306414-2dv3qced 12 8 T t NN cord-306414-2dv3qced 12 9 cells cell NNS cord-306414-2dv3qced 12 10 play play VBP cord-306414-2dv3qced 12 11 in in IN cord-306414-2dv3qced 12 12 the the DT cord-306414-2dv3qced 12 13 orchestration orchestration NN cord-306414-2dv3qced 12 14 of of IN cord-306414-2dv3qced 12 15 the the DT cord-306414-2dv3qced 12 16 antiviral antiviral JJ cord-306414-2dv3qced 12 17 response response NN cord-306414-2dv3qced 12 18 underlying underlie VBG cord-306414-2dv3qced 12 19 the the DT cord-306414-2dv3qced 12 20 pathogenesis pathogenesis NN cord-306414-2dv3qced 12 21 of of IN cord-306414-2dv3qced 12 22 the the DT cord-306414-2dv3qced 12 23 disease disease NN cord-306414-2dv3qced 12 24 , , , cord-306414-2dv3qced 12 25 COVID-19 COVID-19 NNP cord-306414-2dv3qced 12 26 . . . cord-306414-2dv3qced 13 1 We -PRON- PRP cord-306414-2dv3qced 13 2 highlight highlight VBP cord-306414-2dv3qced 13 3 the the DT cord-306414-2dv3qced 13 4 scientific scientific JJ cord-306414-2dv3qced 13 5 rationale rationale NN cord-306414-2dv3qced 13 6 for for IN cord-306414-2dv3qced 13 7 comprehensive comprehensive JJ cord-306414-2dv3qced 13 8 and and CC cord-306414-2dv3qced 13 9 longitudinal longitudinal JJ cord-306414-2dv3qced 13 10 TCR TCR NNP cord-306414-2dv3qced 13 11 analyses analysis NNS cord-306414-2dv3qced 13 12 in in IN cord-306414-2dv3qced 13 13 COVID-19 covid-19 NN cord-306414-2dv3qced 13 14 and and CC cord-306414-2dv3qced 13 15 reason reason NN cord-306414-2dv3qced 13 16 that that DT cord-306414-2dv3qced 13 17 analyzing analyze VBG cord-306414-2dv3qced 13 18 TCR TCR NNP cord-306414-2dv3qced 13 19 repertoire repertoire NN cord-306414-2dv3qced 13 20 in in IN cord-306414-2dv3qced 13 21 COVID-19 covid-19 JJ cord-306414-2dv3qced 13 22 patients patient NNS cord-306414-2dv3qced 13 23 would would MD cord-306414-2dv3qced 13 24 reveal reveal VB cord-306414-2dv3qced 13 25 important important JJ cord-306414-2dv3qced 13 26 findings finding NNS cord-306414-2dv3qced 13 27 that that WDT cord-306414-2dv3qced 13 28 may may MD cord-306414-2dv3qced 13 29 explain explain VB cord-306414-2dv3qced 13 30 the the DT cord-306414-2dv3qced 13 31 outcome outcome NN cord-306414-2dv3qced 13 32 disparity disparity NN cord-306414-2dv3qced 13 33 observed observe VBD cord-306414-2dv3qced 13 34 in in IN cord-306414-2dv3qced 13 35 these these DT cord-306414-2dv3qced 13 36 patients patient NNS cord-306414-2dv3qced 13 37 . . . cord-306414-2dv3qced 14 1 Finally finally RB cord-306414-2dv3qced 14 2 , , , cord-306414-2dv3qced 14 3 we -PRON- PRP cord-306414-2dv3qced 14 4 provide provide VBP cord-306414-2dv3qced 14 5 a a DT cord-306414-2dv3qced 14 6 framework framework NN cord-306414-2dv3qced 14 7 describing describe VBG cord-306414-2dv3qced 14 8 the the DT cord-306414-2dv3qced 14 9 different different JJ cord-306414-2dv3qced 14 10 strategies strategy NNS cord-306414-2dv3qced 14 11 , , , cord-306414-2dv3qced 14 12 the the DT cord-306414-2dv3qced 14 13 advantages advantage NNS cord-306414-2dv3qced 14 14 , , , cord-306414-2dv3qced 14 15 and and CC cord-306414-2dv3qced 14 16 the the DT cord-306414-2dv3qced 14 17 challenges challenge NNS cord-306414-2dv3qced 14 18 involved involve VBN cord-306414-2dv3qced 14 19 in in IN cord-306414-2dv3qced 14 20 obtaining obtain VBG cord-306414-2dv3qced 14 21 useful useful JJ cord-306414-2dv3qced 14 22 TCR TCR NNP cord-306414-2dv3qced 14 23 repertoire repertoire NN cord-306414-2dv3qced 14 24 data datum NNS cord-306414-2dv3qced 14 25 to to TO cord-306414-2dv3qced 14 26 advance advance VB cord-306414-2dv3qced 14 27 our -PRON- PRP$ cord-306414-2dv3qced 14 28 fight fight NN cord-306414-2dv3qced 14 29 against against IN cord-306414-2dv3qced 14 30 COVID-19 COVID-19 NNP cord-306414-2dv3qced 14 31 . . . cord-306414-2dv3qced 15 1 T t NN cord-306414-2dv3qced 15 2 cells cell NNS cord-306414-2dv3qced 15 3 are be VBP cord-306414-2dv3qced 15 4 crucial crucial JJ cord-306414-2dv3qced 15 5 mediators mediator NNS cord-306414-2dv3qced 15 6 of of IN cord-306414-2dv3qced 15 7 antiviral antiviral JJ cord-306414-2dv3qced 15 8 adaptive adaptive JJ cord-306414-2dv3qced 15 9 immunity immunity NN cord-306414-2dv3qced 15 10 and and CC cord-306414-2dv3qced 15 11 delineating delineate VBG cord-306414-2dv3qced 15 12 the the DT cord-306414-2dv3qced 15 13 role role NN cord-306414-2dv3qced 15 14 of of IN cord-306414-2dv3qced 15 15 the the DT cord-306414-2dv3qced 15 16 TCR TCR NNP cord-306414-2dv3qced 15 17 repertoire repertoire NN cord-306414-2dv3qced 15 18 in in IN cord-306414-2dv3qced 15 19 the the DT cord-306414-2dv3qced 15 20 context context NN cord-306414-2dv3qced 15 21 of of IN cord-306414-2dv3qced 16 1 SARS SARS NNP cord-306414-2dv3qced 16 2 - - HYPH cord-306414-2dv3qced 16 3 CoV-2 CoV-2 NNP cord-306414-2dv3qced 16 4 merits merit VBZ cord-306414-2dv3qced 16 5 research research NN cord-306414-2dv3qced 16 6 efforts effort NNS cord-306414-2dv3qced 16 7 . . . cord-306414-2dv3qced 17 1 The the DT cord-306414-2dv3qced 17 2 TCR TCR NNP cord-306414-2dv3qced 17 3 repertoire repertoire NN cord-306414-2dv3qced 17 4 dynamics dynamic NNS cord-306414-2dv3qced 17 5 , , , cord-306414-2dv3qced 17 6 composition composition NN cord-306414-2dv3qced 17 7 , , , cord-306414-2dv3qced 17 8 and and CC cord-306414-2dv3qced 17 9 diversity diversity NN cord-306414-2dv3qced 17 10 are be VBP cord-306414-2dv3qced 17 11 influenced influence VBN cord-306414-2dv3qced 17 12 by by IN cord-306414-2dv3qced 17 13 several several JJ cord-306414-2dv3qced 17 14 intrinsic intrinsic JJ cord-306414-2dv3qced 17 15 and and CC cord-306414-2dv3qced 17 16 extrinsic extrinsic JJ cord-306414-2dv3qced 17 17 factors factor NNS cord-306414-2dv3qced 17 18 such such JJ cord-306414-2dv3qced 17 19 as as IN cord-306414-2dv3qced 17 20 aging age VBG cord-306414-2dv3qced 17 21 , , , cord-306414-2dv3qced 17 22 HLA HLA NNP cord-306414-2dv3qced 17 23 genetic genetic JJ cord-306414-2dv3qced 17 24 variabilities variability NNS cord-306414-2dv3qced 17 25 , , , cord-306414-2dv3qced 17 26 viral viral JJ cord-306414-2dv3qced 17 27 infection infection NN cord-306414-2dv3qced 17 28 , , , cord-306414-2dv3qced 17 29 etc etc FW cord-306414-2dv3qced 17 30 . . . cord-306414-2dv3qced 18 1 The the DT cord-306414-2dv3qced 18 2 architecture architecture NN cord-306414-2dv3qced 18 3 of of IN cord-306414-2dv3qced 18 4 the the DT cord-306414-2dv3qced 18 5 TCR TCR NNP cord-306414-2dv3qced 18 6 repertoire repertoire NN cord-306414-2dv3qced 18 7 largely largely RB cord-306414-2dv3qced 18 8 contributes contribute VBZ cord-306414-2dv3qced 18 9 to to IN cord-306414-2dv3qced 18 10 the the DT cord-306414-2dv3qced 18 11 performance performance NN cord-306414-2dv3qced 18 12 of of IN cord-306414-2dv3qced 18 13 the the DT cord-306414-2dv3qced 18 14 adaptive adaptive JJ cord-306414-2dv3qced 18 15 immune immune JJ cord-306414-2dv3qced 18 16 response response NN cord-306414-2dv3qced 18 17 against against IN cord-306414-2dv3qced 18 18 SARS SARS NNP cord-306414-2dv3qced 18 19 - - HYPH cord-306414-2dv3qced 18 20 CoV-2 CoV-2 NNP cord-306414-2dv3qced 18 21 . . . cord-306414-2dv3qced 19 1 Advances advance NNS cord-306414-2dv3qced 19 2 in in IN cord-306414-2dv3qced 19 3 sequencing sequence VBG cord-306414-2dv3qced 19 4 technologies technology NNS cord-306414-2dv3qced 19 5 and and CC cord-306414-2dv3qced 19 6 single single JJ cord-306414-2dv3qced 19 7 - - HYPH cord-306414-2dv3qced 19 8 cell cell NN cord-306414-2dv3qced 19 9 immune immune NN cord-306414-2dv3qced 19 10 profiling profiling NN cord-306414-2dv3qced 19 11 can can MD cord-306414-2dv3qced 19 12 be be VB cord-306414-2dv3qced 19 13 leveraged leverage VBN cord-306414-2dv3qced 19 14 to to TO cord-306414-2dv3qced 19 15 monitor monitor VB cord-306414-2dv3qced 19 16 adaptive adaptive JJ cord-306414-2dv3qced 19 17 immune immune JJ cord-306414-2dv3qced 19 18 responses response NNS cord-306414-2dv3qced 19 19 in in IN cord-306414-2dv3qced 19 20 COVID-19 covid-19 JJ cord-306414-2dv3qced 19 21 patients patient NNS cord-306414-2dv3qced 19 22 and and CC cord-306414-2dv3qced 19 23 guide guide VB cord-306414-2dv3qced 19 24 future future JJ cord-306414-2dv3qced 19 25 SARS SARS NNP cord-306414-2dv3qced 19 26 - - HYPH cord-306414-2dv3qced 19 27 CoV-2 CoV-2 NNP cord-306414-2dv3qced 19 28 immunotherapy immunotherapy NN cord-306414-2dv3qced 19 29 and and CC cord-306414-2dv3qced 19 30 biomarker biomarker NN cord-306414-2dv3qced 19 31 development development NN cord-306414-2dv3qced 19 32 . . . cord-306414-2dv3qced 20 1 exhibit exhibit NN cord-306414-2dv3qced 20 2 increased increase VBN cord-306414-2dv3qced 20 3 serum serum NN cord-306414-2dv3qced 20 4 interleukin-6 interleukin-6 NNP cord-306414-2dv3qced 20 5 ( ( -LRB- cord-306414-2dv3qced 20 6 IL-6 IL-6 NNP cord-306414-2dv3qced 20 7 ) ) -RRB- cord-306414-2dv3qced 20 8 , , , cord-306414-2dv3qced 20 9 tumor tumor NN cord-306414-2dv3qced 20 10 necrosis necrosis NN cord-306414-2dv3qced 20 11 factor factor NN cord-306414-2dv3qced 20 12 - - HYPH cord-306414-2dv3qced 20 13 α α NN cord-306414-2dv3qced 20 14 ( ( -LRB- cord-306414-2dv3qced 20 15 TNF TNF NNP cord-306414-2dv3qced 20 16 - - HYPH cord-306414-2dv3qced 20 17 α α NNP cord-306414-2dv3qced 20 18 ) ) -RRB- cord-306414-2dv3qced 20 19 , , , cord-306414-2dv3qced 20 20 and and CC cord-306414-2dv3qced 20 21 c c NN cord-306414-2dv3qced 20 22 - - HYPH cord-306414-2dv3qced 20 23 reactive reactive JJ cord-306414-2dv3qced 20 24 protein protein NN cord-306414-2dv3qced 20 25 . . . cord-306414-2dv3qced 21 1 In in IN cord-306414-2dv3qced 21 2 addition addition NN cord-306414-2dv3qced 21 3 , , , cord-306414-2dv3qced 21 4 patients patient NNS cord-306414-2dv3qced 21 5 with with IN cord-306414-2dv3qced 21 6 severe severe JJ cord-306414-2dv3qced 21 7 disease disease NN cord-306414-2dv3qced 21 8 display display NN cord-306414-2dv3qced 21 9 high high JJ cord-306414-2dv3qced 21 10 levels level NNS cord-306414-2dv3qced 21 11 of of IN cord-306414-2dv3qced 21 12 neutrophils neutrophil NNS cord-306414-2dv3qced 21 13 combined combine VBN cord-306414-2dv3qced 21 14 with with IN cord-306414-2dv3qced 21 15 a a DT cord-306414-2dv3qced 21 16 significant significant JJ cord-306414-2dv3qced 21 17 decrease decrease NN cord-306414-2dv3qced 21 18 in in IN cord-306414-2dv3qced 21 19 total total JJ cord-306414-2dv3qced 21 20 lymphocytes lymphocyte NNS cord-306414-2dv3qced 21 21 [ [ -LRB- cord-306414-2dv3qced 21 22 7 7 CD cord-306414-2dv3qced 21 23 ] ] -RRB- cord-306414-2dv3qced 21 24 . . . cord-306414-2dv3qced 22 1 These these DT cord-306414-2dv3qced 22 2 proinflammatory proinflammatory JJ cord-306414-2dv3qced 22 3 immune immune NN cord-306414-2dv3qced 22 4 features feature NNS cord-306414-2dv3qced 22 5 were be VBD cord-306414-2dv3qced 22 6 also also RB cord-306414-2dv3qced 22 7 correlated correlate VBN cord-306414-2dv3qced 22 8 with with IN cord-306414-2dv3qced 22 9 disease disease NN cord-306414-2dv3qced 22 10 severity severity NN cord-306414-2dv3qced 22 11 and and CC cord-306414-2dv3qced 22 12 death death NN cord-306414-2dv3qced 22 13 [ [ -LRB- cord-306414-2dv3qced 22 14 8 8 CD cord-306414-2dv3qced 22 15 ] ] -RRB- cord-306414-2dv3qced 22 16 [ [ -LRB- cord-306414-2dv3qced 22 17 9 9 CD cord-306414-2dv3qced 22 18 ] ] -RRB- cord-306414-2dv3qced 22 19 [ [ -LRB- cord-306414-2dv3qced 22 20 10 10 CD cord-306414-2dv3qced 22 21 ] ] -RRB- cord-306414-2dv3qced 22 22 . . . cord-306414-2dv3qced 23 1 Recent recent JJ cord-306414-2dv3qced 23 2 study study NN cord-306414-2dv3qced 23 3 has have VBZ cord-306414-2dv3qced 23 4 characterized characterize VBN cord-306414-2dv3qced 23 5 bronchoalveolar bronchoalveolar JJ cord-306414-2dv3qced 23 6 lavage lavage NN cord-306414-2dv3qced 23 7 fluid fluid NN cord-306414-2dv3qced 23 8 immune immune JJ cord-306414-2dv3qced 23 9 cells cell NNS cord-306414-2dv3qced 23 10 from from IN cord-306414-2dv3qced 23 11 patients patient NNS cord-306414-2dv3qced 23 12 with with IN cord-306414-2dv3qced 23 13 varying vary VBG cord-306414-2dv3qced 23 14 severity severity NN cord-306414-2dv3qced 23 15 of of IN cord-306414-2dv3qced 23 16 COVID-19 COVID-19 NNP cord-306414-2dv3qced 23 17 and and CC cord-306414-2dv3qced 23 18 from from IN cord-306414-2dv3qced 23 19 healthy healthy JJ cord-306414-2dv3qced 23 20 people people NNS cord-306414-2dv3qced 23 21 by by IN cord-306414-2dv3qced 23 22 using use VBG cord-306414-2dv3qced 23 23 single single JJ cord-306414-2dv3qced 23 24 - - HYPH cord-306414-2dv3qced 23 25 cell cell NN cord-306414-2dv3qced 23 26 RNA rna NN cord-306414-2dv3qced 23 27 sequencing sequencing NN cord-306414-2dv3qced 23 28 . . . cord-306414-2dv3qced 24 1 The the DT cord-306414-2dv3qced 24 2 bronchoalveolar bronchoalveolar JJ cord-306414-2dv3qced 24 3 lavage lavage NN cord-306414-2dv3qced 24 4 fluid fluid NN cord-306414-2dv3qced 24 5 from from IN cord-306414-2dv3qced 24 6 patients patient NNS cord-306414-2dv3qced 24 7 with with IN cord-306414-2dv3qced 24 8 severe severe JJ cord-306414-2dv3qced 24 9 COVID-9 COVID-9 NNPS cord-306414-2dv3qced 24 10 exhibited exhibit VBD cord-306414-2dv3qced 24 11 high high JJ cord-306414-2dv3qced 24 12 proinflammatory proinflammatory JJ cord-306414-2dv3qced 24 13 monocyte monocyte NN cord-306414-2dv3qced 24 14 - - HYPH cord-306414-2dv3qced 24 15 derived derive VBN cord-306414-2dv3qced 24 16 macrophages macrophage NNS cord-306414-2dv3qced 24 17 , , , cord-306414-2dv3qced 24 18 while while IN cord-306414-2dv3qced 24 19 moderate moderate JJ cord-306414-2dv3qced 24 20 cases case NNS cord-306414-2dv3qced 24 21 were be VBD cord-306414-2dv3qced 24 22 characterized characterize VBN cord-306414-2dv3qced 24 23 by by IN cord-306414-2dv3qced 24 24 the the DT cord-306414-2dv3qced 24 25 presence presence NN cord-306414-2dv3qced 24 26 of of IN cord-306414-2dv3qced 24 27 highly highly RB cord-306414-2dv3qced 24 28 clonally clonally RB cord-306414-2dv3qced 24 29 expanded expand VBN cord-306414-2dv3qced 24 30 CD8 CD8 NNP cord-306414-2dv3qced 24 31 + + CC cord-306414-2dv3qced 24 32 T T NNP cord-306414-2dv3qced 24 33 cells cell NNS cord-306414-2dv3qced 24 34 [ [ -LRB- cord-306414-2dv3qced 24 35 11 11 CD cord-306414-2dv3qced 24 36 ] ] -RRB- cord-306414-2dv3qced 24 37 . . . cord-306414-2dv3qced 25 1 Yet yet RB cord-306414-2dv3qced 25 2 , , , cord-306414-2dv3qced 25 3 many many JJ cord-306414-2dv3qced 25 4 important important JJ cord-306414-2dv3qced 25 5 questions question NNS cord-306414-2dv3qced 25 6 remained remain VBD cord-306414-2dv3qced 25 7 unanswered unanswered JJ cord-306414-2dv3qced 25 8 : : : cord-306414-2dv3qced 25 9 why why WRB cord-306414-2dv3qced 25 10 some some DT cord-306414-2dv3qced 25 11 patients patient NNS cord-306414-2dv3qced 25 12 develop develop VBP cord-306414-2dv3qced 25 13 severe severe JJ cord-306414-2dv3qced 25 14 disease disease NN cord-306414-2dv3qced 25 15 , , , cord-306414-2dv3qced 25 16 while while IN cord-306414-2dv3qced 25 17 others other NNS cord-306414-2dv3qced 25 18 do do VBP cord-306414-2dv3qced 25 19 not not RB cord-306414-2dv3qced 25 20 ; ; : cord-306414-2dv3qced 25 21 and and CC cord-306414-2dv3qced 25 22 how how WRB cord-306414-2dv3qced 25 23 genetic genetic JJ cord-306414-2dv3qced 25 24 variabilities variability NNS cord-306414-2dv3qced 25 25 within within IN cord-306414-2dv3qced 25 26 the the DT cord-306414-2dv3qced 25 27 immune immune JJ cord-306414-2dv3qced 25 28 system system NN cord-306414-2dv3qced 25 29 impact impact NN cord-306414-2dv3qced 25 30 individual individual JJ cord-306414-2dv3qced 25 31 antiviral antiviral JJ cord-306414-2dv3qced 25 32 immune immune JJ cord-306414-2dv3qced 25 33 response response NN cord-306414-2dv3qced 25 34 . . . cord-306414-2dv3qced 26 1 The the DT cord-306414-2dv3qced 26 2 Role role NN cord-306414-2dv3qced 26 3 of of IN cord-306414-2dv3qced 26 4 T T NNP cord-306414-2dv3qced 26 5 Cells cell NNS cord-306414-2dv3qced 26 6 in in IN cord-306414-2dv3qced 26 7 the the DT cord-306414-2dv3qced 26 8 Immune Immune NNP cord-306414-2dv3qced 26 9 Response response NN cord-306414-2dv3qced 26 10 against against IN cord-306414-2dv3qced 26 11 SARS SARS NNP cord-306414-2dv3qced 26 12 - - HYPH cord-306414-2dv3qced 26 13 CoV-2 CoV-2 NNP cord-306414-2dv3qced 26 14 Respiratory respiratory JJ cord-306414-2dv3qced 26 15 viruses virus NNS cord-306414-2dv3qced 26 16 have have VBP cord-306414-2dv3qced 26 17 evolved evolve VBN cord-306414-2dv3qced 26 18 in in IN cord-306414-2dv3qced 26 19 many many JJ cord-306414-2dv3qced 26 20 ways way NNS cord-306414-2dv3qced 26 21 to to TO cord-306414-2dv3qced 26 22 evade evade VB cord-306414-2dv3qced 26 23 or or CC cord-306414-2dv3qced 26 24 neutralize neutralize VB cord-306414-2dv3qced 26 25 innate innate JJ cord-306414-2dv3qced 26 26 immunity immunity NN cord-306414-2dv3qced 26 27 ; ; : cord-306414-2dv3qced 26 28 therefore therefore RB cord-306414-2dv3qced 26 29 , , , cord-306414-2dv3qced 26 30 adaptive adaptive JJ cord-306414-2dv3qced 26 31 immunity immunity NN cord-306414-2dv3qced 26 32 , , , cord-306414-2dv3qced 26 33 which which WDT cord-306414-2dv3qced 26 34 is be VBZ cord-306414-2dv3qced 26 35 comprised comprise VBN cord-306414-2dv3qced 26 36 of of IN cord-306414-2dv3qced 26 37 B b NN cord-306414-2dv3qced 26 38 and and CC cord-306414-2dv3qced 26 39 T T NNP cord-306414-2dv3qced 26 40 cells cell NNS cord-306414-2dv3qced 26 41 , , , cord-306414-2dv3qced 26 42 must must MD cord-306414-2dv3qced 26 43 also also RB cord-306414-2dv3qced 26 44 become become VB cord-306414-2dv3qced 26 45 activated activate VBN cord-306414-2dv3qced 26 46 for for IN cord-306414-2dv3qced 26 47 proper proper JJ cord-306414-2dv3qced 26 48 response response NN cord-306414-2dv3qced 26 49 . . . cord-306414-2dv3qced 27 1 B b NN cord-306414-2dv3qced 27 2 cells cell NNS cord-306414-2dv3qced 27 3 are be VBP cord-306414-2dv3qced 27 4 derived derive VBN cord-306414-2dv3qced 27 5 from from IN cord-306414-2dv3qced 27 6 the the DT cord-306414-2dv3qced 27 7 bone bone NN cord-306414-2dv3qced 27 8 marrow marrow NN cord-306414-2dv3qced 27 9 and and CC cord-306414-2dv3qced 27 10 produce produce VB cord-306414-2dv3qced 27 11 antibodies antibody NNS cord-306414-2dv3qced 27 12 that that WDT cord-306414-2dv3qced 27 13 bind bind VBP cord-306414-2dv3qced 27 14 to to IN cord-306414-2dv3qced 27 15 virus virus NN cord-306414-2dv3qced 27 16 particles particle NNS cord-306414-2dv3qced 27 17 in in IN cord-306414-2dv3qced 27 18 the the DT cord-306414-2dv3qced 27 19 blood blood NN cord-306414-2dv3qced 27 20 and and CC cord-306414-2dv3qced 27 21 mucosal mucosal JJ cord-306414-2dv3qced 27 22 surfaces surface NNS cord-306414-2dv3qced 27 23 , , , cord-306414-2dv3qced 27 24 preventing prevent VBG cord-306414-2dv3qced 27 25 the the DT cord-306414-2dv3qced 27 26 spread spread NN cord-306414-2dv3qced 27 27 of of IN cord-306414-2dv3qced 27 28 the the DT cord-306414-2dv3qced 27 29 infection infection NN cord-306414-2dv3qced 27 30 ( ( -LRB- cord-306414-2dv3qced 27 31 humoral humoral JJ cord-306414-2dv3qced 27 32 mediated mediate VBN cord-306414-2dv3qced 27 33 antiviral antiviral JJ cord-306414-2dv3qced 27 34 response response NN cord-306414-2dv3qced 27 35 ) ) -RRB- cord-306414-2dv3qced 27 36 . . . cord-306414-2dv3qced 28 1 Thus thus RB cord-306414-2dv3qced 28 2 , , , cord-306414-2dv3qced 28 3 there there EX cord-306414-2dv3qced 28 4 is be VBZ cord-306414-2dv3qced 28 5 an an DT cord-306414-2dv3qced 28 6 immense immense JJ cord-306414-2dv3qced 28 7 research research NN cord-306414-2dv3qced 28 8 interest interest NN cord-306414-2dv3qced 28 9 in in IN cord-306414-2dv3qced 28 10 the the DT cord-306414-2dv3qced 28 11 identification identification NN cord-306414-2dv3qced 28 12 and and CC cord-306414-2dv3qced 28 13 the the DT cord-306414-2dv3qced 28 14 use use NN cord-306414-2dv3qced 28 15 of of IN cord-306414-2dv3qced 28 16 the the DT cord-306414-2dv3qced 28 17 antibodies antibody NNS cord-306414-2dv3qced 28 18 developed develop VBN cord-306414-2dv3qced 28 19 against against IN cord-306414-2dv3qced 28 20 the the DT cord-306414-2dv3qced 28 21 SARS SARS NNP cord-306414-2dv3qced 28 22 - - HYPH cord-306414-2dv3qced 28 23 CoV-2 CoV-2 NNP cord-306414-2dv3qced 28 24 as as IN cord-306414-2dv3qced 28 25 a a DT cord-306414-2dv3qced 28 26 biomarker biomarker NN cord-306414-2dv3qced 28 27 for for IN cord-306414-2dv3qced 28 28 the the DT cord-306414-2dv3qced 28 29 development development NN cord-306414-2dv3qced 28 30 of of IN cord-306414-2dv3qced 28 31 individual individual JJ cord-306414-2dv3qced 28 32 immunity immunity NN cord-306414-2dv3qced 28 33 or or CC cord-306414-2dv3qced 28 34 for for IN cord-306414-2dv3qced 28 35 therapeutic therapeutic JJ cord-306414-2dv3qced 28 36 purposes purpose NNS cord-306414-2dv3qced 28 37 as as IN cord-306414-2dv3qced 28 38 in in IN cord-306414-2dv3qced 28 39 the the DT cord-306414-2dv3qced 28 40 convalescent convalescent JJ cord-306414-2dv3qced 28 41 plasma plasma NN cord-306414-2dv3qced 28 42 therapy therapy NN cord-306414-2dv3qced 28 43 [ [ -LRB- cord-306414-2dv3qced 28 44 12 12 CD cord-306414-2dv3qced 28 45 , , , cord-306414-2dv3qced 28 46 13 13 CD cord-306414-2dv3qced 28 47 ] ] -RRB- cord-306414-2dv3qced 28 48 . . . cord-306414-2dv3qced 29 1 There there EX cord-306414-2dv3qced 29 2 are be VBP cord-306414-2dv3qced 29 3 also also RB cord-306414-2dv3qced 29 4 substantial substantial JJ cord-306414-2dv3qced 29 5 ongoing ongoing JJ cord-306414-2dv3qced 29 6 efforts effort NNS cord-306414-2dv3qced 29 7 placed place VBN cord-306414-2dv3qced 29 8 to to TO cord-306414-2dv3qced 29 9 develop develop VB cord-306414-2dv3qced 29 10 serological serological JJ cord-306414-2dv3qced 29 11 tests test NNS cord-306414-2dv3qced 29 12 to to TO cord-306414-2dv3qced 29 13 accurately accurately RB cord-306414-2dv3qced 29 14 measure measure VB cord-306414-2dv3qced 29 15 the the DT cord-306414-2dv3qced 29 16 levels level NNS cord-306414-2dv3qced 29 17 of of IN cord-306414-2dv3qced 29 18 antiviral antiviral JJ cord-306414-2dv3qced 29 19 antibodies antibody NNS cord-306414-2dv3qced 29 20 in in IN cord-306414-2dv3qced 29 21 an an DT cord-306414-2dv3qced 29 22 individual individual NN cord-306414-2dv3qced 29 23 [ [ -LRB- cord-306414-2dv3qced 29 24 14 14 CD cord-306414-2dv3qced 29 25 ] ] -RRB- cord-306414-2dv3qced 29 26 . . . cord-306414-2dv3qced 30 1 This this DT cord-306414-2dv3qced 30 2 should should MD cord-306414-2dv3qced 30 3 help help VB cord-306414-2dv3qced 30 4 the the DT cord-306414-2dv3qced 30 5 epidemiological epidemiological JJ cord-306414-2dv3qced 30 6 assessment assessment NN cord-306414-2dv3qced 30 7 of of IN cord-306414-2dv3qced 30 8 the the DT cord-306414-2dv3qced 30 9 scale scale NN cord-306414-2dv3qced 30 10 of of IN cord-306414-2dv3qced 30 11 the the DT cord-306414-2dv3qced 30 12 viral viral JJ cord-306414-2dv3qced 30 13 spread spread NN cord-306414-2dv3qced 30 14 and and CC cord-306414-2dv3qced 30 15 allow allow VB cord-306414-2dv3qced 30 16 countries country NNS cord-306414-2dv3qced 30 17 to to TO cord-306414-2dv3qced 30 18 plan plan VB cord-306414-2dv3qced 30 19 for for IN cord-306414-2dv3qced 30 20 ending end VBG cord-306414-2dv3qced 30 21 lockdowns lockdown NNS cord-306414-2dv3qced 30 22 and and CC cord-306414-2dv3qced 30 23 the the DT cord-306414-2dv3qced 30 24 return return NN cord-306414-2dv3qced 30 25 to to IN cord-306414-2dv3qced 30 26 normal normal JJ cord-306414-2dv3qced 30 27 life life NN cord-306414-2dv3qced 30 28 . . . cord-306414-2dv3qced 31 1 However however RB cord-306414-2dv3qced 31 2 , , , cord-306414-2dv3qced 31 3 current current JJ cord-306414-2dv3qced 31 4 challenges challenge NNS cord-306414-2dv3qced 31 5 with with IN cord-306414-2dv3qced 31 6 the the DT cord-306414-2dv3qced 31 7 sensitivity sensitivity NN cord-306414-2dv3qced 31 8 and and CC cord-306414-2dv3qced 31 9 specificity specificity NN cord-306414-2dv3qced 31 10 for for IN cord-306414-2dv3qced 31 11 some some DT cord-306414-2dv3qced 31 12 of of IN cord-306414-2dv3qced 31 13 these these DT cord-306414-2dv3qced 31 14 assays assay NNS cord-306414-2dv3qced 31 15 are be VBP cord-306414-2dv3qced 31 16 still still RB cord-306414-2dv3qced 31 17 limiting limit VBG cord-306414-2dv3qced 31 18 their -PRON- PRP$ cord-306414-2dv3qced 31 19 wide wide JJ cord-306414-2dv3qced 31 20 use use NN cord-306414-2dv3qced 31 21 . . . cord-306414-2dv3qced 32 1 T t NN cord-306414-2dv3qced 32 2 cells cell NNS cord-306414-2dv3qced 32 3 , , , cord-306414-2dv3qced 32 4 however however RB cord-306414-2dv3qced 32 5 , , , cord-306414-2dv3qced 32 6 mature mature VB cord-306414-2dv3qced 32 7 in in IN cord-306414-2dv3qced 32 8 the the DT cord-306414-2dv3qced 32 9 thymus thymus NN cord-306414-2dv3qced 32 10 , , , cord-306414-2dv3qced 32 11 and and CC cord-306414-2dv3qced 32 12 CD8 CD8 NNP cord-306414-2dv3qced 32 13 + + CC cord-306414-2dv3qced 32 14 T T NNP cord-306414-2dv3qced 32 15 cells cell NNS cord-306414-2dv3qced 32 16 kill kill VBP cord-306414-2dv3qced 32 17 virus virus NN cord-306414-2dv3qced 32 18 - - HYPH cord-306414-2dv3qced 32 19 infected infect VBN cord-306414-2dv3qced 32 20 cells cell NNS cord-306414-2dv3qced 32 21 ( ( -LRB- cord-306414-2dv3qced 32 22 cell cell NN cord-306414-2dv3qced 32 23 - - HYPH cord-306414-2dv3qced 32 24 mediated mediate VBN cord-306414-2dv3qced 32 25 antiviral antiviral JJ cord-306414-2dv3qced 32 26 response response NN cord-306414-2dv3qced 32 27 ) ) -RRB- cord-306414-2dv3qced 32 28 through through IN cord-306414-2dv3qced 32 29 T T NNP cord-306414-2dv3qced 32 30 cell cell NN cord-306414-2dv3qced 32 31 receptor receptor NN cord-306414-2dv3qced 32 32 ( ( -LRB- cord-306414-2dv3qced 32 33 TCR)-mediated tcr)-mediate VBN cord-306414-2dv3qced 32 34 recognition recognition NN cord-306414-2dv3qced 32 35 of of IN cord-306414-2dv3qced 32 36 viral viral JJ cord-306414-2dv3qced 32 37 antigens antigen NNS cord-306414-2dv3qced 32 38 . . . cord-306414-2dv3qced 33 1 Similar similar JJ cord-306414-2dv3qced 33 2 to to IN cord-306414-2dv3qced 33 3 the the DT cord-306414-2dv3qced 33 4 humoral humoral JJ cord-306414-2dv3qced 33 5 mediated mediate VBN cord-306414-2dv3qced 33 6 response response NN cord-306414-2dv3qced 33 7 , , , cord-306414-2dv3qced 33 8 T t NN cord-306414-2dv3qced 33 9 cells cell NNS cord-306414-2dv3qced 33 10 are be VBP cord-306414-2dv3qced 33 11 also also RB cord-306414-2dv3qced 33 12 essential essential JJ cord-306414-2dv3qced 33 13 for for IN cord-306414-2dv3qced 33 14 antiviral antiviral JJ cord-306414-2dv3qced 33 15 defense defense NN cord-306414-2dv3qced 33 16 . . . cord-306414-2dv3qced 34 1 Here here RB cord-306414-2dv3qced 34 2 , , , cord-306414-2dv3qced 34 3 we -PRON- PRP cord-306414-2dv3qced 34 4 focus focus VBP cord-306414-2dv3qced 34 5 on on IN cord-306414-2dv3qced 34 6 the the DT cord-306414-2dv3qced 34 7 role role NN cord-306414-2dv3qced 34 8 of of IN cord-306414-2dv3qced 34 9 T T NNP cord-306414-2dv3qced 34 10 cell cell NN cord-306414-2dv3qced 34 11 ( ( -LRB- cord-306414-2dv3qced 34 12 cell cell NN cord-306414-2dv3qced 34 13 - - HYPH cord-306414-2dv3qced 34 14 mediated mediate VBN cord-306414-2dv3qced 34 15 ) ) -RRB- cord-306414-2dv3qced 34 16 responses response NNS cord-306414-2dv3qced 34 17 and and CC cord-306414-2dv3qced 34 18 the the DT cord-306414-2dv3qced 34 19 TCR TCR NNP cord-306414-2dv3qced 34 20 repertoire repertoire NN cord-306414-2dv3qced 34 21 , , , cord-306414-2dv3qced 34 22 as as IN cord-306414-2dv3qced 34 23 they -PRON- PRP cord-306414-2dv3qced 34 24 are be VBP cord-306414-2dv3qced 34 25 often often RB cord-306414-2dv3qced 34 26 overlooked overlook VBN cord-306414-2dv3qced 34 27 in in IN cord-306414-2dv3qced 34 28 early early JJ cord-306414-2dv3qced 34 29 viral viral JJ cord-306414-2dv3qced 34 30 studies study NNS cord-306414-2dv3qced 34 31 . . . cord-306414-2dv3qced 35 1 T t NN cord-306414-2dv3qced 35 2 cells cell NNS cord-306414-2dv3qced 35 3 play play VBP cord-306414-2dv3qced 35 4 a a DT cord-306414-2dv3qced 35 5 crucial crucial JJ cord-306414-2dv3qced 35 6 role role NN cord-306414-2dv3qced 35 7 in in IN cord-306414-2dv3qced 35 8 the the DT cord-306414-2dv3qced 35 9 immune immune JJ cord-306414-2dv3qced 35 10 response response NN cord-306414-2dv3qced 35 11 to to IN cord-306414-2dv3qced 35 12 viral viral JJ cord-306414-2dv3qced 35 13 infections infection NNS cord-306414-2dv3qced 35 14 due due JJ cord-306414-2dv3qced 35 15 to to IN cord-306414-2dv3qced 35 16 their -PRON- PRP$ cord-306414-2dv3qced 35 17 ability ability NN cord-306414-2dv3qced 35 18 to to TO cord-306414-2dv3qced 35 19 selectively selectively RB cord-306414-2dv3qced 35 20 eliminate eliminate VB cord-306414-2dv3qced 35 21 virus virus NN cord-306414-2dv3qced 35 22 - - HYPH cord-306414-2dv3qced 35 23 infected infect VBN cord-306414-2dv3qced 35 24 cells cell NNS cord-306414-2dv3qced 35 25 [ [ -LRB- cord-306414-2dv3qced 35 26 15 15 CD cord-306414-2dv3qced 35 27 ] ] -RRB- cord-306414-2dv3qced 35 28 . . . cord-306414-2dv3qced 36 1 CD8 CD8 NNP cord-306414-2dv3qced 36 2 + + CC cord-306414-2dv3qced 36 3 T T NNP cord-306414-2dv3qced 36 4 cells cell NNS cord-306414-2dv3qced 36 5 recognize recognize VBP cord-306414-2dv3qced 36 6 viral viral JJ cord-306414-2dv3qced 36 7 antigens antigen NNS cord-306414-2dv3qced 36 8 through through IN cord-306414-2dv3qced 36 9 their -PRON- PRP$ cord-306414-2dv3qced 36 10 presentation presentation NN cord-306414-2dv3qced 36 11 by by IN cord-306414-2dv3qced 36 12 major major JJ cord-306414-2dv3qced 36 13 histocompatibility histocompatibility NN cord-306414-2dv3qced 36 14 class class NN cord-306414-2dv3qced 37 1 I -PRON- PRP cord-306414-2dv3qced 38 1 ( ( -LRB- cord-306414-2dv3qced 38 2 MHC MHC NNP cord-306414-2dv3qced 39 1 I -PRON- PRP cord-306414-2dv3qced 39 2 ) ) -RRB- cord-306414-2dv3qced 39 3 molecules molecule NNS cord-306414-2dv3qced 39 4 on on IN cord-306414-2dv3qced 39 5 virally virally RB cord-306414-2dv3qced 39 6 infected infect VBN cord-306414-2dv3qced 39 7 cells cell NNS cord-306414-2dv3qced 39 8 as as RB cord-306414-2dv3qced 39 9 well well RB cord-306414-2dv3qced 39 10 as as IN cord-306414-2dv3qced 39 11 on on IN cord-306414-2dv3qced 39 12 uninfected uninfected JJ cord-306414-2dv3qced 39 13 dendritic dendritic JJ cord-306414-2dv3qced 39 14 cells cell NNS cord-306414-2dv3qced 39 15 and and CC cord-306414-2dv3qced 39 16 macrophages macrophage NNS cord-306414-2dv3qced 39 17 in in IN cord-306414-2dv3qced 39 18 the the DT cord-306414-2dv3qced 39 19 lymph lymph NN cord-306414-2dv3qced 39 20 nodes node NNS cord-306414-2dv3qced 39 21 ( ( -LRB- cord-306414-2dv3qced 39 22 a a DT cord-306414-2dv3qced 39 23 process process NN cord-306414-2dv3qced 39 24 known know VBN cord-306414-2dv3qced 39 25 as as IN cord-306414-2dv3qced 39 26 cross cross NN cord-306414-2dv3qced 39 27 - - NN cord-306414-2dv3qced 39 28 presentation presentation NN cord-306414-2dv3qced 39 29 ) ) -RRB- cord-306414-2dv3qced 40 1 ( ( -LRB- cord-306414-2dv3qced 40 2 Figure figure NN cord-306414-2dv3qced 40 3 1 1 CD cord-306414-2dv3qced 40 4 ) ) -RRB- cord-306414-2dv3qced 40 5 [ [ -LRB- cord-306414-2dv3qced 40 6 16 16 CD cord-306414-2dv3qced 40 7 ] ] -RRB- cord-306414-2dv3qced 40 8 . . . cord-306414-2dv3qced 41 1 Once once IN cord-306414-2dv3qced 41 2 T t NN cord-306414-2dv3qced 41 3 cells cell NNS cord-306414-2dv3qced 41 4 become become VBP cord-306414-2dv3qced 41 5 activated activate VBN cord-306414-2dv3qced 41 6 through through IN cord-306414-2dv3qced 41 7 antigen antigen NN cord-306414-2dv3qced 41 8 recognition recognition NN cord-306414-2dv3qced 41 9 , , , cord-306414-2dv3qced 41 10 they -PRON- PRP cord-306414-2dv3qced 41 11 undergo undergo VBP cord-306414-2dv3qced 41 12 a a DT cord-306414-2dv3qced 41 13 process process NN cord-306414-2dv3qced 41 14 termed term VBN cord-306414-2dv3qced 41 15 ' ' `` cord-306414-2dv3qced 41 16 clonal clonal JJ cord-306414-2dv3qced 41 17 expansion expansion NN cord-306414-2dv3qced 41 18 ' ' '' cord-306414-2dv3qced 41 19 , , , cord-306414-2dv3qced 41 20 in in IN cord-306414-2dv3qced 41 21 which which WDT cord-306414-2dv3qced 41 22 the the DT cord-306414-2dv3qced 41 23 activated activate VBN cord-306414-2dv3qced 41 24 T T NNP cord-306414-2dv3qced 41 25 cell cell NN cord-306414-2dv3qced 41 26 rapidly rapidly RB cord-306414-2dv3qced 41 27 proliferates proliferate VBZ cord-306414-2dv3qced 41 28 to to TO cord-306414-2dv3qced 41 29 generate generate VB cord-306414-2dv3qced 41 30 a a DT cord-306414-2dv3qced 41 31 large large JJ cord-306414-2dv3qced 41 32 number number NN cord-306414-2dv3qced 41 33 of of IN cord-306414-2dv3qced 41 34 T t NN cord-306414-2dv3qced 41 35 cells cell NNS cord-306414-2dv3qced 41 36 with with IN cord-306414-2dv3qced 41 37 identical identical JJ cord-306414-2dv3qced 41 38 TCRs tcr NNS cord-306414-2dv3qced 41 39 and and CC cord-306414-2dv3qced 41 40 thus thus RB cord-306414-2dv3qced 41 41 , , , cord-306414-2dv3qced 41 42 identical identical JJ cord-306414-2dv3qced 41 43 antigen antigen NN cord-306414-2dv3qced 41 44 recognition recognition NN cord-306414-2dv3qced 41 45 [ [ -LRB- cord-306414-2dv3qced 41 46 17 17 CD cord-306414-2dv3qced 41 47 ] ] -RRB- cord-306414-2dv3qced 41 48 . . . cord-306414-2dv3qced 42 1 To to TO cord-306414-2dv3qced 42 2 eliminate eliminate VB cord-306414-2dv3qced 42 3 virus virus NN cord-306414-2dv3qced 42 4 - - HYPH cord-306414-2dv3qced 42 5 infected infect VBN cord-306414-2dv3qced 42 6 cells cell NNS cord-306414-2dv3qced 42 7 , , , cord-306414-2dv3qced 42 8 expanded expand VBD cord-306414-2dv3qced 42 9 CD8 CD8 NNP cord-306414-2dv3qced 42 10 + + CC cord-306414-2dv3qced 42 11 T T NNP cord-306414-2dv3qced 42 12 cell cell NN cord-306414-2dv3qced 42 13 clones clone NNS cord-306414-2dv3qced 42 14 , , , cord-306414-2dv3qced 42 15 with with IN cord-306414-2dv3qced 42 16 TCRs tcr NNS cord-306414-2dv3qced 42 17 specific specific JJ cord-306414-2dv3qced 42 18 for for IN cord-306414-2dv3qced 42 19 viral viral JJ cord-306414-2dv3qced 42 20 antigens antigen NNS cord-306414-2dv3qced 42 21 , , , cord-306414-2dv3qced 42 22 directly directly RB cord-306414-2dv3qced 42 23 lyse lyse VB cord-306414-2dv3qced 42 24 them -PRON- PRP cord-306414-2dv3qced 42 25 by by IN cord-306414-2dv3qced 42 26 perforin perforin NNP cord-306414-2dv3qced 42 27 / / SYM cord-306414-2dv3qced 42 28 granzyme granzyme NNP cord-306414-2dv3qced 42 29 release release NN cord-306414-2dv3qced 42 30 , , , cord-306414-2dv3qced 42 31 induce induce VB cord-306414-2dv3qced 42 32 apoptosis apoptosis NN cord-306414-2dv3qced 42 33 through through IN cord-306414-2dv3qced 42 34 tumor tumor NN cord-306414-2dv3qced 42 35 necrosis necrosis NN cord-306414-2dv3qced 42 36 factor factor NN cord-306414-2dv3qced 42 37 - - HYPH cord-306414-2dv3qced 42 38 related relate VBN cord-306414-2dv3qced 42 39 apoptosis apoptosis NN cord-306414-2dv3qced 42 40 - - HYPH cord-306414-2dv3qced 42 41 inducing induce VBG cord-306414-2dv3qced 42 42 ligand ligand NN cord-306414-2dv3qced 42 43 ( ( -LRB- cord-306414-2dv3qced 42 44 TRAIL TRAIL NNP cord-306414-2dv3qced 42 45 ) ) -RRB- cord-306414-2dv3qced 42 46 or or CC cord-306414-2dv3qced 42 47 Fas Fas NNP cord-306414-2dv3qced 42 48 ligand ligand NN cord-306414-2dv3qced 42 49 , , , cord-306414-2dv3qced 42 50 and and CC cord-306414-2dv3qced 42 51 secrete secrete JJ cord-306414-2dv3qced 42 52 proinflammatory proinflammatory JJ cord-306414-2dv3qced 42 53 mediators mediator NNS cord-306414-2dv3qced 42 54 such such JJ cord-306414-2dv3qced 42 55 as as IN cord-306414-2dv3qced 42 56 interferon interferon NN cord-306414-2dv3qced 42 57 - - HYPH cord-306414-2dv3qced 42 58 γ γ NN cord-306414-2dv3qced 42 59 ( ( -LRB- cord-306414-2dv3qced 42 60 IFN IFN NNP cord-306414-2dv3qced 42 61 - - HYPH cord-306414-2dv3qced 42 62 γ γ NNP cord-306414-2dv3qced 42 63 ) ) -RRB- cord-306414-2dv3qced 42 64 [ [ -LRB- cord-306414-2dv3qced 42 65 18 18 CD cord-306414-2dv3qced 42 66 ] ] -RRB- cord-306414-2dv3qced 42 67 ( ( -LRB- cord-306414-2dv3qced 42 68 Figure figure NN cord-306414-2dv3qced 42 69 1 1 CD cord-306414-2dv3qced 42 70 ) ) -RRB- cord-306414-2dv3qced 42 71 . . . cord-306414-2dv3qced 43 1 T t NN cord-306414-2dv3qced 43 2 cells cell NNS cord-306414-2dv3qced 43 3 are be VBP cord-306414-2dv3qced 43 4 crucial crucial JJ cord-306414-2dv3qced 43 5 mediators mediator NNS cord-306414-2dv3qced 43 6 of of IN cord-306414-2dv3qced 43 7 antiviral antiviral JJ cord-306414-2dv3qced 43 8 adaptive adaptive JJ cord-306414-2dv3qced 43 9 immunity immunity NN cord-306414-2dv3qced 43 10 and and CC cord-306414-2dv3qced 43 11 delineating delineate VBG cord-306414-2dv3qced 43 12 the the DT cord-306414-2dv3qced 43 13 role role NN cord-306414-2dv3qced 43 14 of of IN cord-306414-2dv3qced 43 15 the the DT cord-306414-2dv3qced 43 16 TCR TCR NNP cord-306414-2dv3qced 43 17 in in IN cord-306414-2dv3qced 43 18 the the DT cord-306414-2dv3qced 43 19 context context NN cord-306414-2dv3qced 43 20 of of IN cord-306414-2dv3qced 43 21 SARS SARS NNP cord-306414-2dv3qced 43 22 - - HYPH cord-306414-2dv3qced 43 23 CoV-2 CoV-2 NNP cord-306414-2dv3qced 43 24 should should MD cord-306414-2dv3qced 43 25 garner garner VB cord-306414-2dv3qced 43 26 vast vast JJ cord-306414-2dv3qced 43 27 interest interest NN cord-306414-2dv3qced 43 28 . . . cord-306414-2dv3qced 44 1 The the DT cord-306414-2dv3qced 44 2 Evolution evolution NN cord-306414-2dv3qced 44 3 of of IN cord-306414-2dv3qced 44 4 the the DT cord-306414-2dv3qced 44 5 TCR TCR NNP cord-306414-2dv3qced 44 6 Repertoire repertoire NN cord-306414-2dv3qced 44 7 during during IN cord-306414-2dv3qced 44 8 Viral viral JJ cord-306414-2dv3qced 44 9 Infection infection NN cord-306414-2dv3qced 45 1 The the DT cord-306414-2dv3qced 45 2 specificity specificity NN cord-306414-2dv3qced 45 3 of of IN cord-306414-2dv3qced 45 4 T t NN cord-306414-2dv3qced 45 5 cells cell NNS cord-306414-2dv3qced 45 6 toward toward IN cord-306414-2dv3qced 45 7 viral viral JJ cord-306414-2dv3qced 45 8 antigens antigen NNS cord-306414-2dv3qced 45 9 presented present VBN cord-306414-2dv3qced 45 10 by by IN cord-306414-2dv3qced 45 11 all all DT cord-306414-2dv3qced 45 12 nucleated nucleated JJ cord-306414-2dv3qced 45 13 cells cell NNS cord-306414-2dv3qced 45 14 on on IN cord-306414-2dv3qced 45 15 MHCs mhc NNS cord-306414-2dv3qced 45 16 is be VBZ cord-306414-2dv3qced 45 17 determined determine VBN cord-306414-2dv3qced 45 18 by by IN cord-306414-2dv3qced 45 19 their -PRON- PRP$ cord-306414-2dv3qced 45 20 TCR TCR NNP cord-306414-2dv3qced 45 21 [ [ -LRB- cord-306414-2dv3qced 45 22 19 19 CD cord-306414-2dv3qced 45 23 ] ] -RRB- cord-306414-2dv3qced 45 24 [ [ -LRB- cord-306414-2dv3qced 45 25 20 20 CD cord-306414-2dv3qced 45 26 ] ] -RRB- cord-306414-2dv3qced 45 27 [ [ -LRB- cord-306414-2dv3qced 45 28 21 21 CD cord-306414-2dv3qced 45 29 ] ] -RRB- cord-306414-2dv3qced 45 30 . . . cord-306414-2dv3qced 46 1 Roughly roughly RB cord-306414-2dv3qced 46 2 95 95 CD cord-306414-2dv3qced 46 3 % % NN cord-306414-2dv3qced 46 4 of of IN cord-306414-2dv3qced 46 5 the the DT cord-306414-2dv3qced 46 6 TCRs tcr NNS cord-306414-2dv3qced 46 7 on on IN cord-306414-2dv3qced 46 8 circulating circulate VBG cord-306414-2dv3qced 46 9 T T NNP cord-306414-2dv3qced 46 10 cells cell NNS cord-306414-2dv3qced 46 11 are be VBP cord-306414-2dv3qced 46 12 alpha alpha NN cord-306414-2dv3qced 46 13 ( ( -LRB- cord-306414-2dv3qced 46 14 α α NN cord-306414-2dv3qced 46 15 ) ) -RRB- cord-306414-2dv3qced 46 16 and and CC cord-306414-2dv3qced 46 17 beta beta NN cord-306414-2dv3qced 46 18 ( ( -LRB- cord-306414-2dv3qced 46 19 β β NN cord-306414-2dv3qced 46 20 ) ) -RRB- cord-306414-2dv3qced 46 21 subunit subunit NN cord-306414-2dv3qced 46 22 heterodimers heterodimer NNS cord-306414-2dv3qced 46 23 . . . cord-306414-2dv3qced 47 1 TCR TCR NNP cord-306414-2dv3qced 47 2 specificity specificity NN cord-306414-2dv3qced 47 3 for for IN cord-306414-2dv3qced 47 4 any any DT cord-306414-2dv3qced 47 5 given give VBN cord-306414-2dv3qced 47 6 antigen antigen NN cord-306414-2dv3qced 47 7 is be VBZ cord-306414-2dv3qced 47 8 shaped shape VBN cord-306414-2dv3qced 47 9 through through IN cord-306414-2dv3qced 47 10 V(D)J V(D)J NNP cord-306414-2dv3qced 47 11 recombination recombination NN cord-306414-2dv3qced 47 12 ( ( -LRB- cord-306414-2dv3qced 47 13 rearrangement rearrangement NN cord-306414-2dv3qced 47 14 ) ) -RRB- cord-306414-2dv3qced 47 15 [ [ -LRB- cord-306414-2dv3qced 47 16 22 22 CD cord-306414-2dv3qced 47 17 ] ] -RRB- cord-306414-2dv3qced 47 18 . . . cord-306414-2dv3qced 48 1 During during IN cord-306414-2dv3qced 48 2 recombination recombination NN cord-306414-2dv3qced 48 3 , , , cord-306414-2dv3qced 48 4 V V NNP cord-306414-2dv3qced 48 5 and and CC cord-306414-2dv3qced 48 6 J J NNP cord-306414-2dv3qced 48 7 ( ( -LRB- cord-306414-2dv3qced 48 8 TCR TCR NNP cord-306414-2dv3qced 48 9 alpha alpha NN cord-306414-2dv3qced 48 10 ) ) -RRB- cord-306414-2dv3qced 48 11 or or CC cord-306414-2dv3qced 48 12 V v NN cord-306414-2dv3qced 48 13 , , , cord-306414-2dv3qced 48 14 D D NNP cord-306414-2dv3qced 48 15 , , , cord-306414-2dv3qced 48 16 and and CC cord-306414-2dv3qced 48 17 J J NNP cord-306414-2dv3qced 48 18 ( ( -LRB- cord-306414-2dv3qced 48 19 TCR TCR NNP cord-306414-2dv3qced 48 20 beta beta NN cord-306414-2dv3qced 48 21 ) ) -RRB- cord-306414-2dv3qced 48 22 gene gene NN cord-306414-2dv3qced 48 23 segments segment NNS cord-306414-2dv3qced 48 24 are be VBP cord-306414-2dv3qced 48 25 randomly randomly RB cord-306414-2dv3qced 48 26 selected select VBN cord-306414-2dv3qced 48 27 from from IN cord-306414-2dv3qced 48 28 an an DT cord-306414-2dv3qced 48 29 array array NN cord-306414-2dv3qced 48 30 of of IN cord-306414-2dv3qced 48 31 V V NNP cord-306414-2dv3qced 48 32 and and CC cord-306414-2dv3qced 48 33 J J NNP cord-306414-2dv3qced 48 34 exons exon NNS cord-306414-2dv3qced 48 35 [ [ -LRB- cord-306414-2dv3qced 48 36 23 23 CD cord-306414-2dv3qced 48 37 ] ] -RRB- cord-306414-2dv3qced 48 38 . . . cord-306414-2dv3qced 49 1 They -PRON- PRP cord-306414-2dv3qced 49 2 undergo undergo VBP cord-306414-2dv3qced 49 3 Glossary Glossary NNP cord-306414-2dv3qced 49 4 Adaptive adaptive JJ cord-306414-2dv3qced 49 5 immunity immunity NN cord-306414-2dv3qced 49 6 : : : cord-306414-2dv3qced 49 7 immunity immunity NN cord-306414-2dv3qced 49 8 that that WDT cord-306414-2dv3qced 49 9 occurs occur VBZ cord-306414-2dv3qced 49 10 in in IN cord-306414-2dv3qced 49 11 response response NN cord-306414-2dv3qced 49 12 to to IN cord-306414-2dv3qced 49 13 specific specific JJ cord-306414-2dv3qced 49 14 antigens antigen NNS cord-306414-2dv3qced 49 15 . . . cord-306414-2dv3qced 50 1 Activation activation NN cord-306414-2dv3qced 50 2 of of IN cord-306414-2dv3qced 50 3 this this DT cord-306414-2dv3qced 50 4 immunity immunity NN cord-306414-2dv3qced 50 5 is be VBZ cord-306414-2dv3qced 50 6 dependent dependent JJ cord-306414-2dv3qced 50 7 on on IN cord-306414-2dv3qced 50 8 the the DT cord-306414-2dv3qced 50 9 presentation presentation NN cord-306414-2dv3qced 50 10 of of IN cord-306414-2dv3qced 50 11 antigens antigen NNS cord-306414-2dv3qced 50 12 by by IN cord-306414-2dv3qced 50 13 the the DT cord-306414-2dv3qced 50 14 innate innate JJ cord-306414-2dv3qced 50 15 immune immune JJ cord-306414-2dv3qced 50 16 system system NN cord-306414-2dv3qced 50 17 . . . cord-306414-2dv3qced 51 1 It -PRON- PRP cord-306414-2dv3qced 51 2 is be VBZ cord-306414-2dv3qced 51 3 mediated mediate VBN cord-306414-2dv3qced 51 4 by by IN cord-306414-2dv3qced 51 5 immunoglobulins immunoglobulin NNS cord-306414-2dv3qced 51 6 and and CC cord-306414-2dv3qced 51 7 T t NN cord-306414-2dv3qced 51 8 cells cell NNS cord-306414-2dv3qced 51 9 . . . cord-306414-2dv3qced 52 1 Angiotensin angiotensin NN cord-306414-2dv3qced 52 2 - - HYPH cord-306414-2dv3qced 52 3 converting convert VBG cord-306414-2dv3qced 52 4 enzyme enzyme NN cord-306414-2dv3qced 52 5 2 2 CD cord-306414-2dv3qced 52 6 ( ( -LRB- cord-306414-2dv3qced 52 7 ACE2 ACE2 NNP cord-306414-2dv3qced 52 8 ) ) -RRB- cord-306414-2dv3qced 52 9 : : : cord-306414-2dv3qced 52 10 a a DT cord-306414-2dv3qced 52 11 carboxypeptidase carboxypeptidase NN cord-306414-2dv3qced 52 12 that that WDT cord-306414-2dv3qced 52 13 is be VBZ cord-306414-2dv3qced 52 14 mainly mainly RB cord-306414-2dv3qced 52 15 expressed express VBN cord-306414-2dv3qced 52 16 in in IN cord-306414-2dv3qced 52 17 vascular vascular JJ cord-306414-2dv3qced 52 18 endothelial endothelial JJ cord-306414-2dv3qced 52 19 cells cell NNS cord-306414-2dv3qced 52 20 and and CC cord-306414-2dv3qced 52 21 the the DT cord-306414-2dv3qced 52 22 renal renal JJ cord-306414-2dv3qced 52 23 tubular tubular JJ cord-306414-2dv3qced 52 24 epithelium epithelium NN cord-306414-2dv3qced 52 25 . . . cord-306414-2dv3qced 53 1 ACE2 ACE2 NNP cord-306414-2dv3qced 53 2 binds bind VBZ cord-306414-2dv3qced 53 3 to to IN cord-306414-2dv3qced 53 4 SARS SARS NNP cord-306414-2dv3qced 53 5 - - HYPH cord-306414-2dv3qced 53 6 CoV-2 CoV-2 NNP cord-306414-2dv3qced 53 7 spike spike NN cord-306414-2dv3qced 53 8 protein protein NN cord-306414-2dv3qced 53 9 and and CC cord-306414-2dv3qced 53 10 promotes promote VBZ cord-306414-2dv3qced 53 11 internalization internalization NN cord-306414-2dv3qced 53 12 of of IN cord-306414-2dv3qced 53 13 the the DT cord-306414-2dv3qced 53 14 virus virus NN cord-306414-2dv3qced 53 15 into into IN cord-306414-2dv3qced 53 16 the the DT cord-306414-2dv3qced 53 17 cells cell NNS cord-306414-2dv3qced 53 18 . . . cord-306414-2dv3qced 54 1 Antigens antigen NNS cord-306414-2dv3qced 54 2 : : : cord-306414-2dv3qced 54 3 molecule molecule NN cord-306414-2dv3qced 54 4 that that WDT cord-306414-2dv3qced 54 5 is be VBZ cord-306414-2dv3qced 54 6 capable capable JJ cord-306414-2dv3qced 54 7 of of IN cord-306414-2dv3qced 54 8 stimulating stimulate VBG cord-306414-2dv3qced 54 9 an an DT cord-306414-2dv3qced 54 10 immune immune JJ cord-306414-2dv3qced 54 11 response response NN cord-306414-2dv3qced 54 12 , , , cord-306414-2dv3qced 54 13 specifically specifically RB cord-306414-2dv3qced 54 14 activating activate VBG cord-306414-2dv3qced 54 15 T T NNP cord-306414-2dv3qced 54 16 cells cell NNS cord-306414-2dv3qced 54 17 or or CC cord-306414-2dv3qced 54 18 B b NN cord-306414-2dv3qced 54 19 cells cell NNS cord-306414-2dv3qced 54 20 . . . cord-306414-2dv3qced 55 1 CD8 CD8 NNP cord-306414-2dv3qced 55 2 + + CC cord-306414-2dv3qced 55 3 T T NNP cord-306414-2dv3qced 55 4 cells cell NNS cord-306414-2dv3qced 55 5 : : : cord-306414-2dv3qced 56 1 T T NNP cord-306414-2dv3qced 56 2 cells cell NNS cord-306414-2dv3qced 56 3 that that WDT cord-306414-2dv3qced 56 4 express express VBP cord-306414-2dv3qced 56 5 CD8 CD8 NNP cord-306414-2dv3qced 56 6 on on IN cord-306414-2dv3qced 56 7 their -PRON- PRP$ cord-306414-2dv3qced 56 8 cell cell NN cord-306414-2dv3qced 56 9 surface surface NN cord-306414-2dv3qced 56 10 are be VBP cord-306414-2dv3qced 56 11 selected select VBN cord-306414-2dv3qced 56 12 in in IN cord-306414-2dv3qced 56 13 the the DT cord-306414-2dv3qced 56 14 thymus thymus NN cord-306414-2dv3qced 56 15 to to TO cord-306414-2dv3qced 56 16 recognize recognize VB cord-306414-2dv3qced 56 17 and and CC cord-306414-2dv3qced 56 18 respond respond VB cord-306414-2dv3qced 56 19 to to IN cord-306414-2dv3qced 56 20 foreign foreign JJ cord-306414-2dv3qced 56 21 peptides peptide NNS cord-306414-2dv3qced 56 22 that that WDT cord-306414-2dv3qced 56 23 are be VBP cord-306414-2dv3qced 56 24 presented present VBN cord-306414-2dv3qced 56 25 in in IN cord-306414-2dv3qced 56 26 the the DT cord-306414-2dv3qced 56 27 groove groove NN cord-306414-2dv3qced 56 28 of of IN cord-306414-2dv3qced 56 29 MHC MHC NNP cord-306414-2dv3qced 56 30 class class NN cord-306414-2dv3qced 56 31 I -PRON- PRP cord-306414-2dv3qced 56 32 molecules molecule NNS cord-306414-2dv3qced 56 33 . . . cord-306414-2dv3qced 57 1 Also also RB cord-306414-2dv3qced 57 2 known know VBN cord-306414-2dv3qced 57 3 as as IN cord-306414-2dv3qced 57 4 cytotoxic cytotoxic JJ cord-306414-2dv3qced 57 5 T t NN cord-306414-2dv3qced 57 6 cells cell NNS cord-306414-2dv3qced 57 7 . . . cord-306414-2dv3qced 58 1 Clonal Clonal NNP cord-306414-2dv3qced 58 2 expansion expansion NN cord-306414-2dv3qced 58 3 : : : cord-306414-2dv3qced 58 4 the the DT cord-306414-2dv3qced 58 5 process process NN cord-306414-2dv3qced 58 6 in in IN cord-306414-2dv3qced 58 7 which which WDT cord-306414-2dv3qced 58 8 a a DT cord-306414-2dv3qced 58 9 small small JJ cord-306414-2dv3qced 58 10 number number NN cord-306414-2dv3qced 58 11 of of IN cord-306414-2dv3qced 58 12 precursor precursor NN cord-306414-2dv3qced 58 13 cells cell NNS cord-306414-2dv3qced 58 14 that that WDT cord-306414-2dv3qced 58 15 recognize recognize VBP cord-306414-2dv3qced 58 16 a a DT cord-306414-2dv3qced 58 17 specific specific JJ cord-306414-2dv3qced 58 18 antigen antigen NN cord-306414-2dv3qced 58 19 proliferate proliferate VBP cord-306414-2dv3qced 58 20 into into IN cord-306414-2dv3qced 58 21 expanded expand VBN cord-306414-2dv3qced 58 22 clones clone NNS cord-306414-2dv3qced 58 23 , , , cord-306414-2dv3qced 58 24 differentiate differentiate VBP cord-306414-2dv3qced 58 25 , , , cord-306414-2dv3qced 58 26 and and CC cord-306414-2dv3qced 58 27 acquire acquire VB cord-306414-2dv3qced 58 28 various various JJ cord-306414-2dv3qced 58 29 effector effector NN cord-306414-2dv3qced 58 30 and and CC cord-306414-2dv3qced 58 31 memory memory NN cord-306414-2dv3qced 58 32 phenotypes phenotype NNS cord-306414-2dv3qced 58 33 , , , cord-306414-2dv3qced 58 34 which which WDT cord-306414-2dv3qced 58 35 promote promote VBP cord-306414-2dv3qced 58 36 effective effective JJ cord-306414-2dv3qced 58 37 immune immune JJ cord-306414-2dv3qced 58 38 responses response NNS cord-306414-2dv3qced 58 39 . . . cord-306414-2dv3qced 59 1 Clonotypes clonotype NNS cord-306414-2dv3qced 59 2 : : : cord-306414-2dv3qced 59 3 term term NN cord-306414-2dv3qced 59 4 used use VBN cord-306414-2dv3qced 59 5 to to TO cord-306414-2dv3qced 59 6 describe describe VB cord-306414-2dv3qced 59 7 a a DT cord-306414-2dv3qced 59 8 unique unique JJ cord-306414-2dv3qced 59 9 nucleotide nucleotide JJ cord-306414-2dv3qced 59 10 sequence sequence NN cord-306414-2dv3qced 59 11 that that WDT cord-306414-2dv3qced 59 12 arises arise VBZ cord-306414-2dv3qced 59 13 during during IN cord-306414-2dv3qced 59 14 the the DT cord-306414-2dv3qced 59 15 gene gene NN cord-306414-2dv3qced 59 16 rearrangement rearrangement NN cord-306414-2dv3qced 59 17 process process NN cord-306414-2dv3qced 59 18 for for IN cord-306414-2dv3qced 59 19 the the DT cord-306414-2dv3qced 59 20 T t NN cord-306414-2dv3qced 59 21 or or CC cord-306414-2dv3qced 59 22 B b NN cord-306414-2dv3qced 59 23 cell cell NN cord-306414-2dv3qced 59 24 receptor receptor NN cord-306414-2dv3qced 59 25 . . . cord-306414-2dv3qced 60 1 Complementarity complementarity NN cord-306414-2dv3qced 60 2 - - HYPH cord-306414-2dv3qced 60 3 determining determine VBG cord-306414-2dv3qced 60 4 region region NN cord-306414-2dv3qced 60 5 3 3 CD cord-306414-2dv3qced 60 6 ( ( -LRB- cord-306414-2dv3qced 60 7 CDR3 CDR3 NNP cord-306414-2dv3qced 60 8 ) ) -RRB- cord-306414-2dv3qced 60 9 : : : cord-306414-2dv3qced 60 10 antigen antigen NN cord-306414-2dv3qced 60 11 binding bind VBG cord-306414-2dv3qced 60 12 region region NN cord-306414-2dv3qced 60 13 within within IN cord-306414-2dv3qced 60 14 TCRs tcr NNS cord-306414-2dv3qced 60 15 that that WDT cord-306414-2dv3qced 60 16 are be VBP cord-306414-2dv3qced 60 17 encoded encode VBN cord-306414-2dv3qced 60 18 by by IN cord-306414-2dv3qced 60 19 the the DT cord-306414-2dv3qced 60 20 region region NN cord-306414-2dv3qced 60 21 spanning span VBG cord-306414-2dv3qced 60 22 the the DT cord-306414-2dv3qced 60 23 V V NNP cord-306414-2dv3qced 60 24 and and CC cord-306414-2dv3qced 60 25 J J NNP cord-306414-2dv3qced 60 26 for for IN cord-306414-2dv3qced 60 27 the the DT cord-306414-2dv3qced 60 28 alpha alpha NN cord-306414-2dv3qced 60 29 subunit subunit NN cord-306414-2dv3qced 60 30 or or CC cord-306414-2dv3qced 60 31 the the DT cord-306414-2dv3qced 60 32 V v NN cord-306414-2dv3qced 60 33 , , , cord-306414-2dv3qced 60 34 D D NNP cord-306414-2dv3qced 60 35 , , , cord-306414-2dv3qced 60 36 and and CC cord-306414-2dv3qced 60 37 J J NNP cord-306414-2dv3qced 60 38 junctions junction NNS cord-306414-2dv3qced 60 39 for for IN cord-306414-2dv3qced 60 40 the the DT cord-306414-2dv3qced 60 41 beta beta NN cord-306414-2dv3qced 60 42 subunit subunit NN cord-306414-2dv3qced 60 43 of of IN cord-306414-2dv3qced 60 44 the the DT cord-306414-2dv3qced 60 45 TCR TCR NNP cord-306414-2dv3qced 60 46 . . . cord-306414-2dv3qced 61 1 The the DT cord-306414-2dv3qced 61 2 diversity diversity NN cord-306414-2dv3qced 61 3 of of IN cord-306414-2dv3qced 61 4 the the DT cord-306414-2dv3qced 61 5 CDR3 CDR3 NNP cord-306414-2dv3qced 61 6 loops loop NNS cord-306414-2dv3qced 61 7 is be VBZ cord-306414-2dv3qced 61 8 significantly significantly RB cord-306414-2dv3qced 61 9 increased increase VBN cord-306414-2dv3qced 61 10 because because IN cord-306414-2dv3qced 61 11 of of IN cord-306414-2dv3qced 61 12 the the DT cord-306414-2dv3qced 61 13 addition addition NN cord-306414-2dv3qced 61 14 and and CC cord-306414-2dv3qced 61 15 loss loss NN cord-306414-2dv3qced 61 16 of of IN cord-306414-2dv3qced 61 17 nucleotides nucleotide NNS cord-306414-2dv3qced 61 18 during during IN cord-306414-2dv3qced 61 19 the the DT cord-306414-2dv3qced 61 20 joining joining NN cord-306414-2dv3qced 61 21 process process NN cord-306414-2dv3qced 61 22 . . . cord-306414-2dv3qced 62 1 The the DT cord-306414-2dv3qced 62 2 CDR3 CDR3 NNP cord-306414-2dv3qced 62 3 region region NN cord-306414-2dv3qced 62 4 determines determine VBZ cord-306414-2dv3qced 62 5 antigen antigen NN cord-306414-2dv3qced 62 6 specificity specificity NN cord-306414-2dv3qced 62 7 of of IN cord-306414-2dv3qced 62 8 TCRs tcr NNS cord-306414-2dv3qced 62 9 . . . cord-306414-2dv3qced 63 1 Coronavirus Coronavirus NNP cord-306414-2dv3qced 63 2 disease disease NN cord-306414-2dv3qced 63 3 ( ( -LRB- cord-306414-2dv3qced 63 4 COVID-19 covid-19 VB cord-306414-2dv3qced 63 5 ) ) -RRB- cord-306414-2dv3qced 63 6 : : : cord-306414-2dv3qced 63 7 infectious infectious JJ cord-306414-2dv3qced 63 8 disease disease NN cord-306414-2dv3qced 63 9 caused cause VBN cord-306414-2dv3qced 63 10 by by IN cord-306414-2dv3qced 63 11 SARS SARS NNP cord-306414-2dv3qced 63 12 - - HYPH cord-306414-2dv3qced 63 13 CoV-2 CoV-2 NNP cord-306414-2dv3qced 63 14 virus virus NN cord-306414-2dv3qced 63 15 and and CC cord-306414-2dv3qced 63 16 is be VBZ cord-306414-2dv3qced 63 17 the the DT cord-306414-2dv3qced 63 18 official official JJ cord-306414-2dv3qced 63 19 name name NN cord-306414-2dv3qced 63 20 given give VBN cord-306414-2dv3qced 63 21 by by IN cord-306414-2dv3qced 63 22 the the DT cord-306414-2dv3qced 63 23 World World NNP cord-306414-2dv3qced 63 24 Health Health NNP cord-306414-2dv3qced 63 25 Organization Organization NNP cord-306414-2dv3qced 63 26 to to IN cord-306414-2dv3qced 63 27 the the DT cord-306414-2dv3qced 63 28 disease disease NN cord-306414-2dv3qced 63 29 caused cause VBN cord-306414-2dv3qced 63 30 by by IN cord-306414-2dv3qced 63 31 this this DT cord-306414-2dv3qced 63 32 newly newly RB cord-306414-2dv3qced 63 33 identified identify VBN cord-306414-2dv3qced 63 34 coronavirus coronavirus NN cord-306414-2dv3qced 63 35 . . . cord-306414-2dv3qced 64 1 Cytomegalovirus Cytomegalovirus NNP cord-306414-2dv3qced 64 2 ( ( -LRB- cord-306414-2dv3qced 64 3 CMV CMV NNP cord-306414-2dv3qced 64 4 ) ) -RRB- cord-306414-2dv3qced 64 5 : : : cord-306414-2dv3qced 64 6 a a DT cord-306414-2dv3qced 64 7 betaherpesvirus betaherpesvirus NN cord-306414-2dv3qced 64 8 , , , cord-306414-2dv3qced 64 9 represents represent VBZ cord-306414-2dv3qced 64 10 the the DT cord-306414-2dv3qced 64 11 major major JJ cord-306414-2dv3qced 64 12 infectious infectious JJ cord-306414-2dv3qced 64 13 cause cause NN cord-306414-2dv3qced 64 14 of of IN cord-306414-2dv3qced 64 15 birth birth NN cord-306414-2dv3qced 64 16 defects defect NNS cord-306414-2dv3qced 64 17 , , , cord-306414-2dv3qced 64 18 as as RB cord-306414-2dv3qced 64 19 well well RB cord-306414-2dv3qced 64 20 as as IN cord-306414-2dv3qced 64 21 an an DT cord-306414-2dv3qced 64 22 important important JJ cord-306414-2dv3qced 64 23 pathogen pathogen NN cord-306414-2dv3qced 64 24 for for IN cord-306414-2dv3qced 64 25 immunocompromised immunocompromised JJ cord-306414-2dv3qced 64 26 individuals individual NNS cord-306414-2dv3qced 64 27 . . . cord-306414-2dv3qced 65 1 The the DT cord-306414-2dv3qced 65 2 viral viral JJ cord-306414-2dv3qced 65 3 nucleocapsid nucleocapsid NN cord-306414-2dv3qced 65 4 containing contain VBG cord-306414-2dv3qced 65 5 a a DT cord-306414-2dv3qced 65 6 linear linear JJ cord-306414-2dv3qced 65 7 double double RB cord-306414-2dv3qced 65 8 - - HYPH cord-306414-2dv3qced 65 9 stranded stranded JJ cord-306414-2dv3qced 65 10 DNA dna NN cord-306414-2dv3qced 65 11 of of IN cord-306414-2dv3qced 65 12 230 230 CD cord-306414-2dv3qced 65 13 kb kb NNP cord-306414-2dv3qced 65 14 is be VBZ cord-306414-2dv3qced 65 15 surrounded surround VBN cord-306414-2dv3qced 65 16 by by IN cord-306414-2dv3qced 65 17 a a DT cord-306414-2dv3qced 65 18 proteinaceous proteinaceous JJ cord-306414-2dv3qced 65 19 tegument tegument NN cord-306414-2dv3qced 65 20 that that WDT cord-306414-2dv3qced 65 21 is be VBZ cord-306414-2dv3qced 65 22 enclosed enclose VBN cord-306414-2dv3qced 65 23 by by IN cord-306414-2dv3qced 65 24 a a DT cord-306414-2dv3qced 65 25 lipid lipid NN cord-306414-2dv3qced 65 26 bilayer bilayer NN cord-306414-2dv3qced 65 27 . . . cord-306414-2dv3qced 66 1 Establishes establish VBZ cord-306414-2dv3qced 66 2 lifelong lifelong JJ cord-306414-2dv3qced 66 3 latent latent JJ cord-306414-2dv3qced 66 4 Trends trend NNS cord-306414-2dv3qced 66 5 in in IN cord-306414-2dv3qced 66 6 Pharmacological Pharmacological NNP cord-306414-2dv3qced 66 7 Sciences Sciences NNPS cord-306414-2dv3qced 66 8 random random JJ cord-306414-2dv3qced 66 9 addition addition NN cord-306414-2dv3qced 66 10 and and CC cord-306414-2dv3qced 66 11 deletion deletion NN cord-306414-2dv3qced 66 12 of of IN cord-306414-2dv3qced 66 13 nucleotides nucleotide NNS cord-306414-2dv3qced 66 14 to to TO cord-306414-2dv3qced 66 15 form form VB cord-306414-2dv3qced 66 16 the the DT cord-306414-2dv3qced 66 17 final final JJ cord-306414-2dv3qced 66 18 mature mature JJ cord-306414-2dv3qced 66 19 TCR TCR NNP cord-306414-2dv3qced 66 20 gene gene NN cord-306414-2dv3qced 66 21 [ [ -LRB- cord-306414-2dv3qced 66 22 24 24 CD cord-306414-2dv3qced 66 23 ] ] -RRB- cord-306414-2dv3qced 66 24 ( ( -LRB- cord-306414-2dv3qced 66 25 Figure figure NN cord-306414-2dv3qced 66 26 2 2 CD cord-306414-2dv3qced 66 27 ) ) -RRB- cord-306414-2dv3qced 66 28 . . . cord-306414-2dv3qced 67 1 This this DT cord-306414-2dv3qced 67 2 process process NN cord-306414-2dv3qced 67 3 can can MD cord-306414-2dv3qced 67 4 generate generate VB cord-306414-2dv3qced 67 5 up up IN cord-306414-2dv3qced 67 6 to to TO cord-306414-2dv3qced 67 7 10 10 CD cord-306414-2dv3qced 67 8 15 15 CD cord-306414-2dv3qced 67 9 unique unique JJ cord-306414-2dv3qced 67 10 TCRs tcr NNS cord-306414-2dv3qced 67 11 [ [ -LRB- cord-306414-2dv3qced 67 12 25 25 CD cord-306414-2dv3qced 67 13 , , , cord-306414-2dv3qced 67 14 26 26 CD cord-306414-2dv3qced 67 15 ] ] -RRB- cord-306414-2dv3qced 67 16 . . . cord-306414-2dv3qced 68 1 The the DT cord-306414-2dv3qced 68 2 antigen antigen NN cord-306414-2dv3qced 68 3 specificity specificity NN cord-306414-2dv3qced 68 4 of of IN cord-306414-2dv3qced 68 5 each each DT cord-306414-2dv3qced 68 6 TCR TCR NNP cord-306414-2dv3qced 68 7 lies lie VBZ cord-306414-2dv3qced 68 8 in in IN cord-306414-2dv3qced 68 9 its -PRON- PRP$ cord-306414-2dv3qced 68 10 complementarity complementarity NN cord-306414-2dv3qced 68 11 - - HYPH cord-306414-2dv3qced 68 12 determining determine VBG cord-306414-2dv3qced 68 13 region region NN cord-306414-2dv3qced 68 14 3 3 CD cord-306414-2dv3qced 68 15 ( ( -LRB- cord-306414-2dv3qced 68 16 CDR3 CDR3 NNP cord-306414-2dv3qced 68 17 ) ) -RRB- cord-306414-2dv3qced 68 18 , , , cord-306414-2dv3qced 68 19 which which WDT cord-306414-2dv3qced 68 20 is be VBZ cord-306414-2dv3qced 68 21 located locate VBN cord-306414-2dv3qced 68 22 at at IN cord-306414-2dv3qced 68 23 the the DT cord-306414-2dv3qced 68 24 V(D)J V(D)J NNP cord-306414-2dv3qced 68 25 junction junction NN cord-306414-2dv3qced 68 26 . . . cord-306414-2dv3qced 69 1 As as IN cord-306414-2dv3qced 69 2 a a DT cord-306414-2dv3qced 69 3 result result NN cord-306414-2dv3qced 69 4 , , , cord-306414-2dv3qced 69 5 each each DT cord-306414-2dv3qced 69 6 unique unique JJ cord-306414-2dv3qced 69 7 T t NN cord-306414-2dv3qced 69 8 cell cell NN cord-306414-2dv3qced 69 9 clone clone NN cord-306414-2dv3qced 69 10 is be VBZ cord-306414-2dv3qced 69 11 identified identify VBN cord-306414-2dv3qced 69 12 by by IN cord-306414-2dv3qced 69 13 its -PRON- PRP$ cord-306414-2dv3qced 69 14 unique unique JJ cord-306414-2dv3qced 69 15 CDR3 CDR3 NNP cord-306414-2dv3qced 69 16 region region NN cord-306414-2dv3qced 69 17 and and CC cord-306414-2dv3qced 69 18 , , , cord-306414-2dv3qced 69 19 therefore therefore RB cord-306414-2dv3qced 69 20 , , , cord-306414-2dv3qced 69 21 unique unique JJ cord-306414-2dv3qced 69 22 antigen antigen NN cord-306414-2dv3qced 69 23 specificity specificity NN cord-306414-2dv3qced 69 24 . . . cord-306414-2dv3qced 70 1 The the DT cord-306414-2dv3qced 70 2 TCR TCR NNP cord-306414-2dv3qced 70 3 recombination recombination NN cord-306414-2dv3qced 70 4 process process NN cord-306414-2dv3qced 70 5 generates generate VBZ cord-306414-2dv3qced 70 6 a a DT cord-306414-2dv3qced 70 7 diverse diverse JJ cord-306414-2dv3qced 70 8 TCR TCR NNP cord-306414-2dv3qced 70 9 repertoire repertoire NN cord-306414-2dv3qced 70 10 capable capable JJ cord-306414-2dv3qced 70 11 of of IN cord-306414-2dv3qced 70 12 recognizing recognize VBG cord-306414-2dv3qced 70 13 a a DT cord-306414-2dv3qced 70 14 wide wide JJ cord-306414-2dv3qced 70 15 range range NN cord-306414-2dv3qced 70 16 of of IN cord-306414-2dv3qced 70 17 antigens antigen NNS cord-306414-2dv3qced 70 18 and and CC cord-306414-2dv3qced 70 19 providing provide VBG cord-306414-2dv3qced 70 20 potent potent JJ cord-306414-2dv3qced 70 21 antiviral antiviral JJ cord-306414-2dv3qced 70 22 immunity immunity NN cord-306414-2dv3qced 70 23 [ [ -LRB- cord-306414-2dv3qced 70 24 27 27 CD cord-306414-2dv3qced 70 25 ] ] -RRB- cord-306414-2dv3qced 70 26 . . . cord-306414-2dv3qced 71 1 The the DT cord-306414-2dv3qced 71 2 diversity diversity NN cord-306414-2dv3qced 71 3 and and CC cord-306414-2dv3qced 71 4 the the DT cord-306414-2dv3qced 71 5 composition composition NN cord-306414-2dv3qced 71 6 of of IN cord-306414-2dv3qced 71 7 the the DT cord-306414-2dv3qced 71 8 TCR TCR NNP cord-306414-2dv3qced 71 9 repertoire repertoire NN cord-306414-2dv3qced 71 10 changes change NNS cord-306414-2dv3qced 71 11 in in IN cord-306414-2dv3qced 71 12 response response NN cord-306414-2dv3qced 71 13 to to IN cord-306414-2dv3qced 71 14 acute acute JJ cord-306414-2dv3qced 71 15 and and CC cord-306414-2dv3qced 71 16 chronic chronic JJ cord-306414-2dv3qced 71 17 infection infection NN cord-306414-2dv3qced 71 18 , , , cord-306414-2dv3qced 71 19 aging aging NN cord-306414-2dv3qced 71 20 , , , cord-306414-2dv3qced 71 21 cancer cancer NN cord-306414-2dv3qced 71 22 , , , cord-306414-2dv3qced 71 23 and and CC cord-306414-2dv3qced 71 24 many many JJ cord-306414-2dv3qced 71 25 other other JJ cord-306414-2dv3qced 71 26 external external JJ cord-306414-2dv3qced 71 27 and and CC cord-306414-2dv3qced 71 28 internal internal JJ cord-306414-2dv3qced 71 29 forces force NNS cord-306414-2dv3qced 71 30 , , , cord-306414-2dv3qced 71 31 making make VBG cord-306414-2dv3qced 71 32 the the DT cord-306414-2dv3qced 71 33 repertoire repertoire NN cord-306414-2dv3qced 71 34 highly highly RB cord-306414-2dv3qced 71 35 dynamic dynamic JJ cord-306414-2dv3qced 71 36 . . . cord-306414-2dv3qced 72 1 Exposure exposure NN cord-306414-2dv3qced 72 2 to to IN cord-306414-2dv3qced 72 3 antigen antigen NN cord-306414-2dv3qced 72 4 triggers trigger VBZ cord-306414-2dv3qced 72 5 massive massive JJ cord-306414-2dv3qced 72 6 expansion expansion NN cord-306414-2dv3qced 72 7 of of IN cord-306414-2dv3qced 72 8 T t NN cord-306414-2dv3qced 72 9 cells cell NNS cord-306414-2dv3qced 72 10 capable capable JJ cord-306414-2dv3qced 72 11 of of IN cord-306414-2dv3qced 72 12 recognizing recognize VBG cord-306414-2dv3qced 72 13 the the DT cord-306414-2dv3qced 72 14 particular particular JJ cord-306414-2dv3qced 72 15 antigen antigen NN cord-306414-2dv3qced 72 16 ( ( -LRB- cord-306414-2dv3qced 72 17 antigen antigen NN cord-306414-2dv3qced 72 18 - - HYPH cord-306414-2dv3qced 72 19 specific specific JJ cord-306414-2dv3qced 72 20 T T NNP cord-306414-2dv3qced 72 21 cells cell NNS cord-306414-2dv3qced 72 22 ) ) -RRB- cord-306414-2dv3qced 72 23 , , , cord-306414-2dv3qced 72 24 leading lead VBG cord-306414-2dv3qced 72 25 to to IN cord-306414-2dv3qced 72 26 skewing skew VBG cord-306414-2dv3qced 72 27 of of IN cord-306414-2dv3qced 72 28 the the DT cord-306414-2dv3qced 72 29 TCR TCR NNP cord-306414-2dv3qced 72 30 repertoire repertoire NN cord-306414-2dv3qced 72 31 ( ( -LRB- cord-306414-2dv3qced 72 32 TCR TCR NNP cord-306414-2dv3qced 72 33 bias bias NN cord-306414-2dv3qced 72 34 ) ) -RRB- cord-306414-2dv3qced 72 35 to to TO cord-306414-2dv3qced 72 36 favor favor VB cord-306414-2dv3qced 72 37 antigen antigen NN cord-306414-2dv3qced 72 38 - - HYPH cord-306414-2dv3qced 72 39 specific specific JJ cord-306414-2dv3qced 72 40 T t NN cord-306414-2dv3qced 72 41 cells cell NNS cord-306414-2dv3qced 72 42 [ [ -LRB- cord-306414-2dv3qced 72 43 28 28 CD cord-306414-2dv3qced 72 44 ] ] -RRB- cord-306414-2dv3qced 73 1 [ [ -LRB- cord-306414-2dv3qced 73 2 29 29 CD cord-306414-2dv3qced 73 3 ] ] -RRB- cord-306414-2dv3qced 73 4 [ [ -LRB- cord-306414-2dv3qced 73 5 30 30 CD cord-306414-2dv3qced 73 6 ] ] -RRB- cord-306414-2dv3qced 73 7 . . . cord-306414-2dv3qced 74 1 Evidence evidence NN cord-306414-2dv3qced 74 2 for for IN cord-306414-2dv3qced 74 3 TCR TCR NNP cord-306414-2dv3qced 74 4 bias bias NN cord-306414-2dv3qced 74 5 in in IN cord-306414-2dv3qced 74 6 antiviral antiviral JJ cord-306414-2dv3qced 74 7 immunity immunity NN cord-306414-2dv3qced 74 8 is be VBZ cord-306414-2dv3qced 74 9 demonstrated demonstrate VBN cord-306414-2dv3qced 74 10 for for IN cord-306414-2dv3qced 74 11 many many JJ cord-306414-2dv3qced 74 12 viral viral JJ cord-306414-2dv3qced 74 13 infections infection NNS cord-306414-2dv3qced 74 14 , , , cord-306414-2dv3qced 74 15 such such JJ cord-306414-2dv3qced 74 16 as as IN cord-306414-2dv3qced 74 17 the the DT cord-306414-2dv3qced 74 18 Epstein Epstein NNP cord-306414-2dv3qced 74 19 - - HYPH cord-306414-2dv3qced 74 20 Barr Barr NNP cord-306414-2dv3qced 74 21 virus virus NN cord-306414-2dv3qced 74 22 ( ( -LRB- cord-306414-2dv3qced 74 23 EBV EBV NNP cord-306414-2dv3qced 74 24 ) ) -RRB- cord-306414-2dv3qced 74 25 and and CC cord-306414-2dv3qced 74 26 influenza influenza NN cord-306414-2dv3qced 74 27 . . . cord-306414-2dv3qced 75 1 TCR TCR NNP cord-306414-2dv3qced 75 2 analysis analysis NN cord-306414-2dv3qced 75 3 of of IN cord-306414-2dv3qced 75 4 peripheral peripheral JJ cord-306414-2dv3qced 75 5 blood blood NN cord-306414-2dv3qced 75 6 lymphocytes lymphocyte NNS cord-306414-2dv3qced 75 7 from from IN cord-306414-2dv3qced 75 8 either either CC cord-306414-2dv3qced 75 9 EBV EBV NNP cord-306414-2dv3qced 75 10 - - HYPH cord-306414-2dv3qced 75 11 positive positive JJ cord-306414-2dv3qced 75 12 or or CC cord-306414-2dv3qced 75 13 influenza influenza NN cord-306414-2dv3qced 75 14 - - HYPH cord-306414-2dv3qced 75 15 positive positive JJ cord-306414-2dv3qced 75 16 individuals individual NNS cord-306414-2dv3qced 75 17 has have VBZ cord-306414-2dv3qced 75 18 revealed reveal VBN cord-306414-2dv3qced 75 19 several several JJ cord-306414-2dv3qced 75 20 T T NNP cord-306414-2dv3qced 75 21 cell cell NN cord-306414-2dv3qced 75 22 clonotypes clonotype NNS cord-306414-2dv3qced 75 23 with with IN cord-306414-2dv3qced 75 24 recurrent recurrent JJ cord-306414-2dv3qced 75 25 TCR TCR NNP cord-306414-2dv3qced 75 26 motifs motif NNS cord-306414-2dv3qced 75 27 shared share VBN cord-306414-2dv3qced 75 28 by by IN cord-306414-2dv3qced 75 29 individuals individual NNS cord-306414-2dv3qced 75 30 [ [ -LRB- cord-306414-2dv3qced 75 31 31 31 CD cord-306414-2dv3qced 75 32 ] ] -RRB- cord-306414-2dv3qced 75 33 [ [ -LRB- cord-306414-2dv3qced 75 34 32 32 CD cord-306414-2dv3qced 75 35 ] ] -RRB- cord-306414-2dv3qced 75 36 [ [ -LRB- cord-306414-2dv3qced 75 37 33 33 CD cord-306414-2dv3qced 75 38 ] ] -RRB- cord-306414-2dv3qced 75 39 . . . cord-306414-2dv3qced 76 1 In in IN cord-306414-2dv3qced 76 2 addition addition NN cord-306414-2dv3qced 76 3 , , , cord-306414-2dv3qced 76 4 the the DT cord-306414-2dv3qced 76 5 expansion expansion NN cord-306414-2dv3qced 76 6 and and CC cord-306414-2dv3qced 76 7 maintenance maintenance NN cord-306414-2dv3qced 76 8 of of IN cord-306414-2dv3qced 76 9 TCRs tcr NNS cord-306414-2dv3qced 76 10 during during IN cord-306414-2dv3qced 76 11 chronic chronic JJ cord-306414-2dv3qced 76 12 cytomegalovirus cytomegalovirus NN cord-306414-2dv3qced 76 13 ( ( -LRB- cord-306414-2dv3qced 76 14 CMV CMV NNP cord-306414-2dv3qced 76 15 ) ) -RRB- cord-306414-2dv3qced 76 16 infection infection NN cord-306414-2dv3qced 76 17 demonstrates demonstrate VBZ cord-306414-2dv3qced 76 18 the the DT cord-306414-2dv3qced 76 19 dynamic dynamic JJ cord-306414-2dv3qced 76 20 and and CC cord-306414-2dv3qced 76 21 evolving evolve VBG cord-306414-2dv3qced 76 22 nature nature NN cord-306414-2dv3qced 76 23 of of IN cord-306414-2dv3qced 76 24 the the DT cord-306414-2dv3qced 76 25 TCR TCR NNP cord-306414-2dv3qced 76 26 repertoire repertoire NN cord-306414-2dv3qced 76 27 in in IN cord-306414-2dv3qced 76 28 response response NN cord-306414-2dv3qced 76 29 to to IN cord-306414-2dv3qced 76 30 viral viral JJ cord-306414-2dv3qced 76 31 infection infection NN cord-306414-2dv3qced 76 32 [ [ -LRB- cord-306414-2dv3qced 76 33 34 34 CD cord-306414-2dv3qced 76 34 ] ] -RRB- cord-306414-2dv3qced 76 35 . . . cord-306414-2dv3qced 77 1 Therefore therefore RB cord-306414-2dv3qced 77 2 , , , cord-306414-2dv3qced 77 3 it -PRON- PRP cord-306414-2dv3qced 77 4 stands stand VBZ cord-306414-2dv3qced 77 5 to to TO cord-306414-2dv3qced 77 6 reason reason VB cord-306414-2dv3qced 77 7 that that IN cord-306414-2dv3qced 77 8 the the DT cord-306414-2dv3qced 77 9 presence presence NN cord-306414-2dv3qced 77 10 of of IN cord-306414-2dv3qced 77 11 a a DT cord-306414-2dv3qced 77 12 bias bias NN cord-306414-2dv3qced 77 13 exists exist VBZ cord-306414-2dv3qced 77 14 in in IN cord-306414-2dv3qced 77 15 the the DT cord-306414-2dv3qced 77 16 TCR TCR NNP cord-306414-2dv3qced 77 17 repertoire repertoire NN cord-306414-2dv3qced 77 18 as as IN cord-306414-2dv3qced 77 19 a a DT cord-306414-2dv3qced 77 20 result result NN cord-306414-2dv3qced 77 21 of of IN cord-306414-2dv3qced 77 22 the the DT cord-306414-2dv3qced 77 23 SARS SARS NNP cord-306414-2dv3qced 77 24 - - HYPH cord-306414-2dv3qced 77 25 CoV-2 CoV-2 NNP cord-306414-2dv3qced 77 26 infection infection NN cord-306414-2dv3qced 77 27 . . . cord-306414-2dv3qced 78 1 The the DT cord-306414-2dv3qced 78 2 characteristics characteristic NNS cord-306414-2dv3qced 78 3 of of IN cord-306414-2dv3qced 78 4 the the DT cord-306414-2dv3qced 78 5 TCR TCR NNP cord-306414-2dv3qced 78 6 repertoire repertoire NN cord-306414-2dv3qced 78 7 , , , cord-306414-2dv3qced 78 8 such such JJ cord-306414-2dv3qced 78 9 as as IN cord-306414-2dv3qced 78 10 diversity diversity NN cord-306414-2dv3qced 78 11 , , , cord-306414-2dv3qced 78 12 composition composition NN cord-306414-2dv3qced 78 13 , , , cord-306414-2dv3qced 78 14 and and CC cord-306414-2dv3qced 78 15 dynamics dynamic NNS cord-306414-2dv3qced 78 16 , , , cord-306414-2dv3qced 78 17 are be VBP cord-306414-2dv3qced 78 18 controlled control VBN cord-306414-2dv3qced 78 19 by by IN cord-306414-2dv3qced 78 20 both both DT cord-306414-2dv3qced 78 21 genetic genetic JJ cord-306414-2dv3qced 78 22 and and CC cord-306414-2dv3qced 78 23 epigenetic epigenetic JJ cord-306414-2dv3qced 78 24 factors factor NNS cord-306414-2dv3qced 78 25 , , , cord-306414-2dv3qced 78 26 leading lead VBG cord-306414-2dv3qced 78 27 to to IN cord-306414-2dv3qced 78 28 interindividual interindividual JJ cord-306414-2dv3qced 78 29 variability variability NN cord-306414-2dv3qced 78 30 . . . cord-306414-2dv3qced 79 1 Here here RB cord-306414-2dv3qced 79 2 we -PRON- PRP cord-306414-2dv3qced 79 3 discuss discuss VBP cord-306414-2dv3qced 79 4 two two CD cord-306414-2dv3qced 79 5 factors factor NNS cord-306414-2dv3qced 79 6 that that WDT cord-306414-2dv3qced 79 7 we -PRON- PRP cord-306414-2dv3qced 79 8 believe believe VBP cord-306414-2dv3qced 79 9 are be VBP cord-306414-2dv3qced 79 10 relevant relevant JJ cord-306414-2dv3qced 79 11 to to IN cord-306414-2dv3qced 79 12 COVID-19 covid-19 VB cord-306414-2dv3qced 79 13 and and CC cord-306414-2dv3qced 79 14 the the DT cord-306414-2dv3qced 79 15 observed observed JJ cord-306414-2dv3qced 79 16 immune immune JJ cord-306414-2dv3qced 79 17 response response NN cord-306414-2dv3qced 79 18 disparities disparity NNS cord-306414-2dv3qced 79 19 among among IN cord-306414-2dv3qced 79 20 patients patient NNS cord-306414-2dv3qced 79 21 . . . cord-306414-2dv3qced 80 1 Aging age VBG cord-306414-2dv3qced 80 2 of of IN cord-306414-2dv3qced 80 3 the the DT cord-306414-2dv3qced 80 4 TCR TCR NNP cord-306414-2dv3qced 80 5 Repertoire repertoire NN cord-306414-2dv3qced 81 1 It -PRON- PRP cord-306414-2dv3qced 81 2 is be VBZ cord-306414-2dv3qced 81 3 well well RB cord-306414-2dv3qced 81 4 known know VBN cord-306414-2dv3qced 81 5 that that IN cord-306414-2dv3qced 81 6 TCR TCR NNP cord-306414-2dv3qced 81 7 repertoire repertoire NN cord-306414-2dv3qced 81 8 diversity diversity NN cord-306414-2dv3qced 81 9 declines decline VBZ cord-306414-2dv3qced 81 10 with with IN cord-306414-2dv3qced 81 11 aging age VBG cord-306414-2dv3qced 81 12 . . . cord-306414-2dv3qced 82 1 This this DT cord-306414-2dv3qced 82 2 decrease decrease NN cord-306414-2dv3qced 82 3 in in IN cord-306414-2dv3qced 82 4 TCR TCR NNP cord-306414-2dv3qced 82 5 diversity diversity NN cord-306414-2dv3qced 82 6 as as IN cord-306414-2dv3qced 82 7 we -PRON- PRP cord-306414-2dv3qced 82 8 age age NN cord-306414-2dv3qced 82 9 has have VBZ cord-306414-2dv3qced 82 10 also also RB cord-306414-2dv3qced 82 11 been be VBN cord-306414-2dv3qced 82 12 demonstrated demonstrate VBN cord-306414-2dv3qced 82 13 in in IN cord-306414-2dv3qced 82 14 various various JJ cord-306414-2dv3qced 82 15 studies study NNS cord-306414-2dv3qced 82 16 using use VBG cord-306414-2dv3qced 82 17 high high JJ cord-306414-2dv3qced 82 18 - - HYPH cord-306414-2dv3qced 82 19 throughput throughput NN cord-306414-2dv3qced 82 20 sequencing sequencing NN cord-306414-2dv3qced 82 21 [ [ -LRB- cord-306414-2dv3qced 82 22 TCR TCR NNP cord-306414-2dv3qced 82 23 sequencing sequencing NN cord-306414-2dv3qced 82 24 ( ( -LRB- cord-306414-2dv3qced 82 25 TCR TCR NNP cord-306414-2dv3qced 82 26 - - HYPH cord-306414-2dv3qced 82 27 seq seq NNP cord-306414-2dv3qced 82 28 ) ) -RRB- cord-306414-2dv3qced 82 29 ] ] -RRB- cord-306414-2dv3qced 82 30 technology technology NN cord-306414-2dv3qced 82 31 . . . cord-306414-2dv3qced 83 1 One one CD cord-306414-2dv3qced 83 2 study study NN cord-306414-2dv3qced 83 3 estimated estimate VBD cord-306414-2dv3qced 83 4 the the DT cord-306414-2dv3qced 83 5 TCRβ TCRβ NNS cord-306414-2dv3qced 83 6 diversity diversity NN cord-306414-2dv3qced 83 7 in in IN cord-306414-2dv3qced 83 8 naïve naïve JJ cord-306414-2dv3qced 83 9 T t NN cord-306414-2dv3qced 83 10 cell cell NN cord-306414-2dv3qced 83 11 repertoires repertoire NNS cord-306414-2dv3qced 83 12 was be VBD cord-306414-2dv3qced 83 13 60 60 CD cord-306414-2dv3qced 83 14 - - SYM cord-306414-2dv3qced 83 15 120 120 CD cord-306414-2dv3qced 83 16 million million CD cord-306414-2dv3qced 83 17 for for IN cord-306414-2dv3qced 83 18 individuals individual NNS cord-306414-2dv3qced 83 19 in in IN cord-306414-2dv3qced 83 20 the the DT cord-306414-2dv3qced 83 21 first first JJ cord-306414-2dv3qced 83 22 two two CD cord-306414-2dv3qced 83 23 decades decade NNS cord-306414-2dv3qced 83 24 of of IN cord-306414-2dv3qced 83 25 life life NN cord-306414-2dv3qced 83 26 and and CC cord-306414-2dv3qced 83 27 declined decline VBD cord-306414-2dv3qced 83 28 to to IN cord-306414-2dv3qced 83 29 8 8 CD cord-306414-2dv3qced 83 30 - - SYM cord-306414-2dv3qced 83 31 57 57 CD cord-306414-2dv3qced 83 32 million million CD cord-306414-2dv3qced 83 33 in in IN cord-306414-2dv3qced 83 34 individuals individual NNS cord-306414-2dv3qced 83 35 over over IN cord-306414-2dv3qced 83 36 70 70 CD cord-306414-2dv3qced 83 37 years year NNS cord-306414-2dv3qced 83 38 old old JJ cord-306414-2dv3qced 83 39 [ [ -LRB- cord-306414-2dv3qced 83 40 35 35 CD cord-306414-2dv3qced 83 41 ] ] -RRB- cord-306414-2dv3qced 83 42 . . . cord-306414-2dv3qced 84 1 The the DT cord-306414-2dv3qced 84 2 evidence evidence NN cord-306414-2dv3qced 84 3 of of IN cord-306414-2dv3qced 84 4 aging age VBG cord-306414-2dv3qced 84 5 TCR TCR NNP cord-306414-2dv3qced 84 6 repertoire repertoire NN cord-306414-2dv3qced 84 7 is be VBZ cord-306414-2dv3qced 84 8 demonstrated demonstrate VBN cord-306414-2dv3qced 84 9 in in IN cord-306414-2dv3qced 84 10 the the DT cord-306414-2dv3qced 84 11 antiviral antiviral JJ cord-306414-2dv3qced 84 12 response response NN cord-306414-2dv3qced 84 13 against against IN cord-306414-2dv3qced 84 14 the the DT cord-306414-2dv3qced 84 15 human human JJ cord-306414-2dv3qced 84 16 influenza influenza NN cord-306414-2dv3qced 84 17 A a DT cord-306414-2dv3qced 84 18 virus virus NN cord-306414-2dv3qced 84 19 [ [ -LRB- cord-306414-2dv3qced 84 20 39 39 CD cord-306414-2dv3qced 84 21 , , , cord-306414-2dv3qced 84 22 40 40 CD cord-306414-2dv3qced 84 23 ] ] -RRB- cord-306414-2dv3qced 84 24 . . . cord-306414-2dv3qced 85 1 This this DT cord-306414-2dv3qced 85 2 may may MD cord-306414-2dv3qced 85 3 be be VB cord-306414-2dv3qced 85 4 of of IN cord-306414-2dv3qced 85 5 particular particular JJ cord-306414-2dv3qced 85 6 interest interest NN cord-306414-2dv3qced 85 7 in in IN cord-306414-2dv3qced 85 8 the the DT cord-306414-2dv3qced 85 9 context context NN cord-306414-2dv3qced 85 10 of of IN cord-306414-2dv3qced 85 11 COVID-19 COVID-19 NNP cord-306414-2dv3qced 85 12 , , , cord-306414-2dv3qced 85 13 considering consider VBG cord-306414-2dv3qced 85 14 that that IN cord-306414-2dv3qced 85 15 the the DT cord-306414-2dv3qced 85 16 mortality mortality NN cord-306414-2dv3qced 85 17 of of IN cord-306414-2dv3qced 85 18 elderly elderly JJ cord-306414-2dv3qced 85 19 patients patient NNS cord-306414-2dv3qced 85 20 with with IN cord-306414-2dv3qced 85 21 COVID-19 COVID-19 NNP cord-306414-2dv3qced 85 22 is be VBZ cord-306414-2dv3qced 85 23 higher high JJR cord-306414-2dv3qced 85 24 than than IN cord-306414-2dv3qced 85 25 that that DT cord-306414-2dv3qced 85 26 of of IN cord-306414-2dv3qced 85 27 young young JJ cord-306414-2dv3qced 85 28 and and CC cord-306414-2dv3qced 85 29 middle middle JJ cord-306414-2dv3qced 85 30 - - HYPH cord-306414-2dv3qced 85 31 aged aged JJ cord-306414-2dv3qced 85 32 patients patient NNS cord-306414-2dv3qced 85 33 [ [ -LRB- cord-306414-2dv3qced 85 34 3 3 CD cord-306414-2dv3qced 85 35 , , , cord-306414-2dv3qced 85 36 [ [ -LRB- cord-306414-2dv3qced 85 37 36 36 CD cord-306414-2dv3qced 85 38 ] ] -RRB- cord-306414-2dv3qced 85 39 [ [ -LRB- cord-306414-2dv3qced 85 40 37 37 CD cord-306414-2dv3qced 85 41 ] ] -RRB- cord-306414-2dv3qced 85 42 [ [ -LRB- cord-306414-2dv3qced 85 43 38 38 CD cord-306414-2dv3qced 85 44 ] ] -RRB- cord-306414-2dv3qced 85 45 . . . cord-306414-2dv3qced 86 1 Whether whether IN cord-306414-2dv3qced 86 2 the the DT cord-306414-2dv3qced 86 3 aged aged JJ cord-306414-2dv3qced 86 4 and and CC cord-306414-2dv3qced 86 5 less less RBR cord-306414-2dv3qced 86 6 diverse diverse JJ cord-306414-2dv3qced 86 7 TCR TCR NNP cord-306414-2dv3qced 86 8 repertoire repertoire NN cord-306414-2dv3qced 86 9 impacts impact VBZ cord-306414-2dv3qced 86 10 the the DT cord-306414-2dv3qced 86 11 ability ability NN cord-306414-2dv3qced 86 12 to to TO cord-306414-2dv3qced 86 13 generate generate VB cord-306414-2dv3qced 86 14 a a DT cord-306414-2dv3qced 86 15 sufficiently sufficiently RB cord-306414-2dv3qced 86 16 robust robust JJ cord-306414-2dv3qced 86 17 T T NNP cord-306414-2dv3qced 86 18 cell cell NN cord-306414-2dv3qced 86 19 response response NN cord-306414-2dv3qced 86 20 against against IN cord-306414-2dv3qced 86 21 SARS SARS NNP cord-306414-2dv3qced 86 22 - - HYPH cord-306414-2dv3qced 86 23 CoV-2 CoV-2 NNP cord-306414-2dv3qced 86 24 in in IN cord-306414-2dv3qced 86 25 older old JJR cord-306414-2dv3qced 86 26 patients patient NNS cord-306414-2dv3qced 86 27 remains remain VBZ cord-306414-2dv3qced 86 28 to to TO cord-306414-2dv3qced 86 29 be be VB cord-306414-2dv3qced 86 30 studied study VBN cord-306414-2dv3qced 86 31 . . . cord-306414-2dv3qced 87 1 Genetic Genetic NNP cord-306414-2dv3qced 87 2 Variabilities Variabilities NNP cord-306414-2dv3qced 87 3 in in IN cord-306414-2dv3qced 87 4 the the DT cord-306414-2dv3qced 87 5 HLA HLA NNP cord-306414-2dv3qced 87 6 Genetic Genetic NNP cord-306414-2dv3qced 87 7 differences difference NNS cord-306414-2dv3qced 87 8 in in IN cord-306414-2dv3qced 87 9 the the DT cord-306414-2dv3qced 87 10 HLA HLA NNP cord-306414-2dv3qced 87 11 genes gene NNS cord-306414-2dv3qced 87 12 are be VBP cord-306414-2dv3qced 87 13 well well RB cord-306414-2dv3qced 87 14 known know VBN cord-306414-2dv3qced 87 15 to to TO cord-306414-2dv3qced 87 16 influence influence VB cord-306414-2dv3qced 87 17 the the DT cord-306414-2dv3qced 87 18 composition composition NN cord-306414-2dv3qced 87 19 of of IN cord-306414-2dv3qced 87 20 TCR TCR NNP cord-306414-2dv3qced 87 21 repertoire repertoire NN cord-306414-2dv3qced 87 22 by by IN cord-306414-2dv3qced 87 23 affecting affect VBG cord-306414-2dv3qced 87 24 intra intra JJ cord-306414-2dv3qced 87 25 - - HYPH cord-306414-2dv3qced 87 26 and and CC cord-306414-2dv3qced 87 27 extrathymic extrathymic JJ cord-306414-2dv3qced 87 28 clonal clonal JJ cord-306414-2dv3qced 87 29 selection selection NN cord-306414-2dv3qced 87 30 , , , cord-306414-2dv3qced 87 31 partially partially RB cord-306414-2dv3qced 87 32 accounting account VBG cord-306414-2dv3qced 87 33 for for IN cord-306414-2dv3qced 87 34 individual individual JJ cord-306414-2dv3qced 87 35 variations variation NNS cord-306414-2dv3qced 87 36 in in IN cord-306414-2dv3qced 87 37 the the DT cord-306414-2dv3qced 87 38 immune immune JJ cord-306414-2dv3qced 87 39 response response NN cord-306414-2dv3qced 87 40 to to IN cord-306414-2dv3qced 87 41 pathogens pathogen NNS cord-306414-2dv3qced 87 42 [ [ -LRB- cord-306414-2dv3qced 87 43 41 41 CD cord-306414-2dv3qced 87 44 ] ] -RRB- cord-306414-2dv3qced 88 1 [ [ -LRB- cord-306414-2dv3qced 88 2 42 42 CD cord-306414-2dv3qced 88 3 ] ] -RRB- cord-306414-2dv3qced 88 4 [ [ -LRB- cord-306414-2dv3qced 88 5 43 43 CD cord-306414-2dv3qced 88 6 ] ] -RRB- cord-306414-2dv3qced 88 7 . . . cord-306414-2dv3qced 89 1 These these DT cord-306414-2dv3qced 89 2 genetic genetic JJ cord-306414-2dv3qced 89 3 differences difference NNS cord-306414-2dv3qced 89 4 in in IN cord-306414-2dv3qced 89 5 the the DT cord-306414-2dv3qced 89 6 HLA HLA NNP cord-306414-2dv3qced 89 7 genes gene NNS cord-306414-2dv3qced 89 8 directly directly RB cord-306414-2dv3qced 89 9 affect affect VBP cord-306414-2dv3qced 89 10 the the DT cord-306414-2dv3qced 89 11 binding bind VBG cord-306414-2dv3qced 89 12 affinity affinity NN cord-306414-2dv3qced 89 13 of of IN cord-306414-2dv3qced 89 14 MHC MHC NNP cord-306414-2dv3qced 89 15 I I NNP cord-306414-2dv3qced 89 16 / / SYM cord-306414-2dv3qced 89 17 II II NNP cord-306414-2dv3qced 89 18 molecules molecule NNS cord-306414-2dv3qced 89 19 to to IN cord-306414-2dv3qced 89 20 antigens antigen NNS cord-306414-2dv3qced 89 21 and and CC cord-306414-2dv3qced 89 22 , , , cord-306414-2dv3qced 89 23 consequently consequently RB cord-306414-2dv3qced 89 24 , , , cord-306414-2dv3qced 89 25 influence influence VB cord-306414-2dv3qced 89 26 T T NNP cord-306414-2dv3qced 89 27 cell cell NN cord-306414-2dv3qced 89 28 recognition recognition NN cord-306414-2dv3qced 89 29 of of IN cord-306414-2dv3qced 89 30 pathogen pathogen NN cord-306414-2dv3qced 89 31 - - HYPH cord-306414-2dv3qced 89 32 derived derive VBN cord-306414-2dv3qced 89 33 antigens antigen NNS cord-306414-2dv3qced 89 34 [ [ -LRB- cord-306414-2dv3qced 89 35 44 44 CD cord-306414-2dv3qced 89 36 ] ] -RRB- cord-306414-2dv3qced 89 37 [ [ -LRB- cord-306414-2dv3qced 89 38 45 45 CD cord-306414-2dv3qced 89 39 ] ] -RRB- cord-306414-2dv3qced 89 40 [ [ -LRB- cord-306414-2dv3qced 89 41 46 46 CD cord-306414-2dv3qced 89 42 ] ] -RRB- cord-306414-2dv3qced 89 43 [ [ -LRB- cord-306414-2dv3qced 89 44 47 47 CD cord-306414-2dv3qced 89 45 ] ] -RRB- cord-306414-2dv3qced 89 46 . . . cord-306414-2dv3qced 90 1 One one CD cord-306414-2dv3qced 90 2 study study NN cord-306414-2dv3qced 90 3 conducted conduct VBD cord-306414-2dv3qced 90 4 a a DT cord-306414-2dv3qced 90 5 comprehensive comprehensive JJ cord-306414-2dv3qced 90 6 in in IN cord-306414-2dv3qced 90 7 silico silico NN cord-306414-2dv3qced 90 8 analysis analysis NN cord-306414-2dv3qced 90 9 of of IN cord-306414-2dv3qced 90 10 viral viral JJ cord-306414-2dv3qced 90 11 peptide peptide NN cord-306414-2dv3qced 90 12 - - HYPH cord-306414-2dv3qced 90 13 MHC MHC NNP cord-306414-2dv3qced 90 14 class class NN cord-306414-2dv3qced 90 15 I -PRON- PRP cord-306414-2dv3qced 90 16 binding bind VBG cord-306414-2dv3qced 90 17 affinity affinity NN cord-306414-2dv3qced 90 18 across across IN cord-306414-2dv3qced 90 19 over over IN cord-306414-2dv3qced 90 20 a a DT cord-306414-2dv3qced 90 21 hundred hundred CD cord-306414-2dv3qced 90 22 HLA HLA NNP cord-306414-2dv3qced 90 23 -A -A NNS cord-306414-2dv3qced 90 24 , , , cord-306414-2dv3qced 90 25 -B -b ADD cord-306414-2dv3qced 90 26 , , , cord-306414-2dv3qced 90 27 and and CC cord-306414-2dv3qced 90 28 -C -C VBZ cord-306414-2dv3qced 90 29 genotypes genotype NNS cord-306414-2dv3qced 90 30 for for IN cord-306414-2dv3qced 90 31 all all DT cord-306414-2dv3qced 90 32 SARS SARS NNP cord-306414-2dv3qced 90 33 - - HYPH cord-306414-2dv3qced 90 34 CoV-2 CoV-2 NNP cord-306414-2dv3qced 90 35 peptides peptide NNS cord-306414-2dv3qced 90 36 . . . cord-306414-2dv3qced 91 1 It -PRON- PRP cord-306414-2dv3qced 91 2 showed show VBD cord-306414-2dv3qced 91 3 that that IN cord-306414-2dv3qced 91 4 HLA HLA NNP cord-306414-2dv3qced 91 5 - - HYPH cord-306414-2dv3qced 91 6 B*46:01 B*46:01 NNP cord-306414-2dv3qced 91 7 had have VBD cord-306414-2dv3qced 91 8 the the DT cord-306414-2dv3qced 91 9 fewest few JJS cord-306414-2dv3qced 91 10 predicted predict VBN cord-306414-2dv3qced 91 11 binding bind VBG cord-306414-2dv3qced 91 12 peptides peptide NNS cord-306414-2dv3qced 91 13 for for IN cord-306414-2dv3qced 91 14 SARS SARS NNP cord-306414-2dv3qced 91 15 - - HYPH cord-306414-2dv3qced 91 16 CoV-2 CoV-2 NNP cord-306414-2dv3qced 91 17 , , , cord-306414-2dv3qced 91 18 suggesting suggest VBG cord-306414-2dv3qced 91 19 higher high JJR cord-306414-2dv3qced 91 20 vulnerability vulnerability NN cord-306414-2dv3qced 91 21 to to IN cord-306414-2dv3qced 91 22 COVID-19 covid-19 VB cord-306414-2dv3qced 91 23 among among IN cord-306414-2dv3qced 91 24 individuals individual NNS cord-306414-2dv3qced 91 25 with with IN cord-306414-2dv3qced 91 26 this this DT cord-306414-2dv3qced 91 27 allele allele NN cord-306414-2dv3qced 91 28 [ [ -LRB- cord-306414-2dv3qced 91 29 48 48 CD cord-306414-2dv3qced 91 30 ] ] -RRB- cord-306414-2dv3qced 91 31 . . . cord-306414-2dv3qced 92 1 The the DT cord-306414-2dv3qced 92 2 same same JJ cord-306414-2dv3qced 92 3 allele allele NN cord-306414-2dv3qced 92 4 was be VBD cord-306414-2dv3qced 92 5 previously previously RB cord-306414-2dv3qced 92 6 associated associate VBN cord-306414-2dv3qced 92 7 with with IN cord-306414-2dv3qced 92 8 susceptibility susceptibility NN cord-306414-2dv3qced 92 9 to to IN cord-306414-2dv3qced 92 10 SARS SARS NNP cord-306414-2dv3qced 92 11 [ [ -LRB- cord-306414-2dv3qced 92 12 49 49 CD cord-306414-2dv3qced 92 13 ] ] -RRB- cord-306414-2dv3qced 92 14 . . . cord-306414-2dv3qced 93 1 In in IN cord-306414-2dv3qced 93 2 contrast contrast NN cord-306414-2dv3qced 93 3 , , , cord-306414-2dv3qced 93 4 HLA HLA NNP cord-306414-2dv3qced 93 5 - - HYPH cord-306414-2dv3qced 93 6 B*15:03 B*15:03 NNP cord-306414-2dv3qced 93 7 was be VBD cord-306414-2dv3qced 93 8 found find VBN cord-306414-2dv3qced 93 9 to to TO cord-306414-2dv3qced 93 10 have have VB cord-306414-2dv3qced 93 11 the the DT cord-306414-2dv3qced 93 12 greatest great JJS cord-306414-2dv3qced 93 13 capacity capacity NN cord-306414-2dv3qced 93 14 to to TO cord-306414-2dv3qced 93 15 present present VB cord-306414-2dv3qced 93 16 infection infection NN cord-306414-2dv3qced 93 17 and and CC cord-306414-2dv3qced 93 18 is be VBZ cord-306414-2dv3qced 93 19 reactivated reactivate VBN cord-306414-2dv3qced 93 20 by by IN cord-306414-2dv3qced 93 21 immunosuppression immunosuppression NN cord-306414-2dv3qced 93 22 . . . cord-306414-2dv3qced 94 1 Dendritic dendritic JJ cord-306414-2dv3qced 94 2 cells cell NNS cord-306414-2dv3qced 94 3 : : : cord-306414-2dv3qced 94 4 professional professional JJ cord-306414-2dv3qced 94 5 antigenpresenting antigenpresenting NN cord-306414-2dv3qced 94 6 cells cell NNS cord-306414-2dv3qced 94 7 , , , cord-306414-2dv3qced 94 8 uniquely uniquely RB cord-306414-2dv3qced 94 9 able able JJ cord-306414-2dv3qced 94 10 to to TO cord-306414-2dv3qced 94 11 induce induce VB cord-306414-2dv3qced 94 12 naïve naïve JJ cord-306414-2dv3qced 94 13 T T NNP cord-306414-2dv3qced 94 14 cell cell NN cord-306414-2dv3qced 94 15 activation activation NN cord-306414-2dv3qced 94 16 and and CC cord-306414-2dv3qced 94 17 effector effector NN cord-306414-2dv3qced 94 18 differentiation differentiation NN cord-306414-2dv3qced 94 19 . . . cord-306414-2dv3qced 95 1 Epstein Epstein NNP cord-306414-2dv3qced 95 2 - - HYPH cord-306414-2dv3qced 95 3 Barr Barr NNP cord-306414-2dv3qced 95 4 virus virus NN cord-306414-2dv3qced 95 5 ( ( -LRB- cord-306414-2dv3qced 95 6 EBV EBV NNP cord-306414-2dv3qced 95 7 ) ) -RRB- cord-306414-2dv3qced 95 8 : : : cord-306414-2dv3qced 95 9 a a DT cord-306414-2dv3qced 95 10 human human JJ cord-306414-2dv3qced 95 11 herpesvirus herpesvirus NN cord-306414-2dv3qced 95 12 4 4 CD cord-306414-2dv3qced 95 13 with with IN cord-306414-2dv3qced 95 14 a a DT cord-306414-2dv3qced 95 15 large large JJ cord-306414-2dv3qced 95 16 doublestranded doublestranded JJ cord-306414-2dv3qced 95 17 DNA dna NN cord-306414-2dv3qced 95 18 genome genome NN cord-306414-2dv3qced 95 19 that that WDT cord-306414-2dv3qced 95 20 belongs belong VBZ cord-306414-2dv3qced 95 21 to to IN cord-306414-2dv3qced 95 22 the the DT cord-306414-2dv3qced 95 23 γ γ NN cord-306414-2dv3qced 95 24 - - HYPH cord-306414-2dv3qced 95 25 herpesviridae herpesviridae NN cord-306414-2dv3qced 95 26 subfamily subfamily NN cord-306414-2dv3qced 95 27 . . . cord-306414-2dv3qced 96 1 EBV EBV NNP cord-306414-2dv3qced 96 2 was be VBD cord-306414-2dv3qced 96 3 the the DT cord-306414-2dv3qced 96 4 first first JJ cord-306414-2dv3qced 96 5 tumor tumor NN cord-306414-2dv3qced 96 6 virus virus NN cord-306414-2dv3qced 96 7 identified identify VBN cord-306414-2dv3qced 96 8 in in IN cord-306414-2dv3qced 96 9 humans human NNS cord-306414-2dv3qced 96 10 . . . cord-306414-2dv3qced 97 1 The the DT cord-306414-2dv3qced 97 2 virus virus NN cord-306414-2dv3qced 97 3 is be VBZ cord-306414-2dv3qced 97 4 primarily primarily RB cord-306414-2dv3qced 97 5 associated associate VBN cord-306414-2dv3qced 97 6 with with IN cord-306414-2dv3qced 97 7 lymphomas lymphoma NNS cord-306414-2dv3qced 97 8 and and CC cord-306414-2dv3qced 97 9 epithelial epithelial JJ cord-306414-2dv3qced 97 10 cell cell NN cord-306414-2dv3qced 97 11 cancers cancer NNS cord-306414-2dv3qced 97 12 and and CC cord-306414-2dv3qced 97 13 is be VBZ cord-306414-2dv3qced 97 14 the the DT cord-306414-2dv3qced 97 15 causative causative JJ cord-306414-2dv3qced 97 16 agent agent NN cord-306414-2dv3qced 97 17 of of IN cord-306414-2dv3qced 97 18 mononucleosis mononucleosis NN cord-306414-2dv3qced 97 19 after after IN cord-306414-2dv3qced 97 20 infection infection NN cord-306414-2dv3qced 97 21 . . . cord-306414-2dv3qced 98 1 High high JJ cord-306414-2dv3qced 98 2 - - HYPH cord-306414-2dv3qced 98 3 throughput throughput NN cord-306414-2dv3qced 98 4 sequencing sequencing NN cord-306414-2dv3qced 98 5 : : : cord-306414-2dv3qced 98 6 technology technology NN cord-306414-2dv3qced 98 7 capable capable JJ cord-306414-2dv3qced 98 8 of of IN cord-306414-2dv3qced 98 9 sequencing sequence VBG cord-306414-2dv3qced 98 10 multiple multiple JJ cord-306414-2dv3qced 98 11 DNA dna NN cord-306414-2dv3qced 98 12 molecules molecule NNS cord-306414-2dv3qced 98 13 in in IN cord-306414-2dv3qced 98 14 parallel parallel NN cord-306414-2dv3qced 98 15 to to TO cord-306414-2dv3qced 98 16 enable enable VB cord-306414-2dv3qced 98 17 millions million NNS cord-306414-2dv3qced 98 18 of of IN cord-306414-2dv3qced 98 19 DNA dna NN cord-306414-2dv3qced 98 20 molecules molecule NNS cord-306414-2dv3qced 98 21 to to TO cord-306414-2dv3qced 98 22 be be VB cord-306414-2dv3qced 98 23 sequenced sequence VBN cord-306414-2dv3qced 98 24 at at IN cord-306414-2dv3qced 98 25 once once RB cord-306414-2dv3qced 98 26 . . . cord-306414-2dv3qced 99 1 This this DT cord-306414-2dv3qced 99 2 is be VBZ cord-306414-2dv3qced 99 3 much much RB cord-306414-2dv3qced 99 4 quicker quick JJR cord-306414-2dv3qced 99 5 and and CC cord-306414-2dv3qced 99 6 cheaper cheap JJR cord-306414-2dv3qced 99 7 than than IN cord-306414-2dv3qced 99 8 the the DT cord-306414-2dv3qced 99 9 previously previously RB cord-306414-2dv3qced 99 10 used use VBN cord-306414-2dv3qced 99 11 Sanger Sanger NNP cord-306414-2dv3qced 99 12 sequencing sequencing NN cord-306414-2dv3qced 99 13 and and CC cord-306414-2dv3qced 99 14 , , , cord-306414-2dv3qced 99 15 as as IN cord-306414-2dv3qced 99 16 such such JJ cord-306414-2dv3qced 99 17 , , , cord-306414-2dv3qced 99 18 revolutionized revolutionize VBD cord-306414-2dv3qced 99 19 the the DT cord-306414-2dv3qced 99 20 study study NN cord-306414-2dv3qced 99 21 of of IN cord-306414-2dv3qced 99 22 genomics genomic NNS cord-306414-2dv3qced 99 23 and and CC cord-306414-2dv3qced 99 24 molecular molecular JJ cord-306414-2dv3qced 99 25 biology biology NN cord-306414-2dv3qced 99 26 . . . cord-306414-2dv3qced 100 1 Human human JJ cord-306414-2dv3qced 100 2 leukocyte leukocyte NN cord-306414-2dv3qced 100 3 antigen antigen NN cord-306414-2dv3qced 100 4 ( ( -LRB- cord-306414-2dv3qced 100 5 HLA HLA NNP cord-306414-2dv3qced 100 6 ) ) -RRB- cord-306414-2dv3qced 100 7 : : : cord-306414-2dv3qced 100 8 gene gene NN cord-306414-2dv3qced 100 9 cluster cluster NN cord-306414-2dv3qced 100 10 that that WDT cord-306414-2dv3qced 100 11 encodes encode VBZ cord-306414-2dv3qced 100 12 the the DT cord-306414-2dv3qced 100 13 major major JJ cord-306414-2dv3qced 100 14 histocompatibility histocompatibility NN cord-306414-2dv3qced 100 15 complex complex NN cord-306414-2dv3qced 100 16 proteins protein NNS cord-306414-2dv3qced 100 17 , , , cord-306414-2dv3qced 100 18 which which WDT cord-306414-2dv3qced 100 19 present present VBP cord-306414-2dv3qced 100 20 antigen antigen NN cord-306414-2dv3qced 100 21 peptides peptide NNS cord-306414-2dv3qced 100 22 to to IN cord-306414-2dv3qced 100 23 the the DT cord-306414-2dv3qced 100 24 host host NN cord-306414-2dv3qced 100 25 immune immune JJ cord-306414-2dv3qced 100 26 system system NN cord-306414-2dv3qced 100 27 . . . cord-306414-2dv3qced 101 1 These these DT cord-306414-2dv3qced 101 2 are be VBP cord-306414-2dv3qced 101 3 among among IN cord-306414-2dv3qced 101 4 the the DT cord-306414-2dv3qced 101 5 most most RBS cord-306414-2dv3qced 101 6 polymorphic polymorphic JJ cord-306414-2dv3qced 101 7 genes gene NNS cord-306414-2dv3qced 101 8 in in IN cord-306414-2dv3qced 101 9 the the DT cord-306414-2dv3qced 101 10 human human JJ cord-306414-2dv3qced 101 11 genome genome NN cord-306414-2dv3qced 101 12 . . . cord-306414-2dv3qced 102 1 Influenza influenza NN cord-306414-2dv3qced 102 2 : : : cord-306414-2dv3qced 102 3 a a DT cord-306414-2dv3qced 102 4 virus virus NN cord-306414-2dv3qced 102 5 commonly commonly RB cord-306414-2dv3qced 102 6 known know VBN cord-306414-2dv3qced 102 7 as as IN cord-306414-2dv3qced 102 8 the the DT cord-306414-2dv3qced 102 9 ' ' `` cord-306414-2dv3qced 102 10 flu flu NN cord-306414-2dv3qced 102 11 ' ' '' cord-306414-2dv3qced 102 12 that that WDT cord-306414-2dv3qced 102 13 attacks attack VBZ cord-306414-2dv3qced 102 14 the the DT cord-306414-2dv3qced 102 15 respiratory respiratory JJ cord-306414-2dv3qced 102 16 system system NN cord-306414-2dv3qced 102 17 . . . cord-306414-2dv3qced 103 1 Influenza influenza NN cord-306414-2dv3qced 103 2 viruses virus NNS cord-306414-2dv3qced 103 3 are be VBP cord-306414-2dv3qced 103 4 members member NNS cord-306414-2dv3qced 103 5 of of IN cord-306414-2dv3qced 103 6 the the DT cord-306414-2dv3qced 103 7 family family NN cord-306414-2dv3qced 103 8 Orthomyxoviridae Orthomyxoviridae NNP cord-306414-2dv3qced 103 9 . . . cord-306414-2dv3qced 104 1 This this DT cord-306414-2dv3qced 104 2 family family NN cord-306414-2dv3qced 104 3 represents represent VBZ cord-306414-2dv3qced 104 4 enveloped envelop VBN cord-306414-2dv3qced 104 5 viruses virus NNS cord-306414-2dv3qced 104 6 , , , cord-306414-2dv3qced 104 7 the the DT cord-306414-2dv3qced 104 8 genome genome NN cord-306414-2dv3qced 104 9 of of IN cord-306414-2dv3qced 104 10 which which WDT cord-306414-2dv3qced 104 11 consists consist VBZ cord-306414-2dv3qced 104 12 of of IN cord-306414-2dv3qced 104 13 segmented segmented JJ cord-306414-2dv3qced 104 14 negative negative JJ cord-306414-2dv3qced 104 15 - - HYPH cord-306414-2dv3qced 104 16 sense sense NN cord-306414-2dv3qced 104 17 singlestrand singlestrand NN cord-306414-2dv3qced 104 18 RNA RNA NNP cord-306414-2dv3qced 104 19 segments segment NNS cord-306414-2dv3qced 104 20 . . . cord-306414-2dv3qced 105 1 There there EX cord-306414-2dv3qced 105 2 are be VBP cord-306414-2dv3qced 105 3 four four CD cord-306414-2dv3qced 105 4 genera genus NNS cord-306414-2dv3qced 105 5 of of IN cord-306414-2dv3qced 105 6 this this DT cord-306414-2dv3qced 105 7 family family NN cord-306414-2dv3qced 105 8 : : : cord-306414-2dv3qced 105 9 types type NNS cord-306414-2dv3qced 105 10 A A NNP cord-306414-2dv3qced 105 11 , , , cord-306414-2dv3qced 105 12 B b NN cord-306414-2dv3qced 105 13 , , , cord-306414-2dv3qced 105 14 C C NNP cord-306414-2dv3qced 105 15 , , , cord-306414-2dv3qced 105 16 and and CC cord-306414-2dv3qced 105 17 Thogotovirus Thogotovirus NNP cord-306414-2dv3qced 105 18 , , , cord-306414-2dv3qced 105 19 of of IN cord-306414-2dv3qced 105 20 which which WDT cord-306414-2dv3qced 105 21 , , , cord-306414-2dv3qced 105 22 however however RB cord-306414-2dv3qced 105 23 , , , cord-306414-2dv3qced 105 24 only only RB cord-306414-2dv3qced 105 25 genera genus NNS cord-306414-2dv3qced 105 26 A a NN cord-306414-2dv3qced 105 27 and and CC cord-306414-2dv3qced 105 28 B b NN cord-306414-2dv3qced 105 29 are be VBP cord-306414-2dv3qced 105 30 clinically clinically RB cord-306414-2dv3qced 105 31 relevant relevant JJ cord-306414-2dv3qced 105 32 for for IN cord-306414-2dv3qced 105 33 humans human NNS cord-306414-2dv3qced 105 34 . . . cord-306414-2dv3qced 106 1 Innate innate JJ cord-306414-2dv3qced 106 2 immunity immunity NN cord-306414-2dv3qced 106 3 : : : cord-306414-2dv3qced 106 4 an an DT cord-306414-2dv3qced 106 5 immunological immunological JJ cord-306414-2dv3qced 106 6 subsystem subsystem NN cord-306414-2dv3qced 106 7 that that WDT cord-306414-2dv3qced 106 8 comprises comprise VBZ cord-306414-2dv3qced 106 9 the the DT cord-306414-2dv3qced 106 10 cells cell NNS cord-306414-2dv3qced 106 11 and and CC cord-306414-2dv3qced 106 12 mechanisms mechanism NNS cord-306414-2dv3qced 106 13 that that WDT cord-306414-2dv3qced 106 14 provide provide VBP cord-306414-2dv3qced 106 15 the the DT cord-306414-2dv3qced 106 16 first first JJ cord-306414-2dv3qced 106 17 line line NN cord-306414-2dv3qced 106 18 of of IN cord-306414-2dv3qced 106 19 defense defense NN cord-306414-2dv3qced 106 20 from from IN cord-306414-2dv3qced 106 21 infection infection NN cord-306414-2dv3qced 106 22 in in IN cord-306414-2dv3qced 106 23 a a DT cord-306414-2dv3qced 106 24 nonspecific nonspecific JJ cord-306414-2dv3qced 106 25 manner manner NN cord-306414-2dv3qced 106 26 . . . cord-306414-2dv3qced 107 1 It -PRON- PRP cord-306414-2dv3qced 107 2 detects detect VBZ cord-306414-2dv3qced 107 3 and and CC cord-306414-2dv3qced 107 4 responds respond VBZ cord-306414-2dv3qced 107 5 to to IN cord-306414-2dv3qced 107 6 pathogen pathogen NN cord-306414-2dv3qced 107 7 associated associate VBD cord-306414-2dv3qced 107 8 molecular molecular JJ cord-306414-2dv3qced 107 9 patterns pattern NNS cord-306414-2dv3qced 107 10 ( ( -LRB- cord-306414-2dv3qced 107 11 PAMPS PAMPS NNP cord-306414-2dv3qced 107 12 ) ) -RRB- cord-306414-2dv3qced 107 13 that that WDT cord-306414-2dv3qced 107 14 are be VBP cord-306414-2dv3qced 107 15 not not RB cord-306414-2dv3qced 107 16 naturally naturally RB cord-306414-2dv3qced 107 17 occurring occur VBG cord-306414-2dv3qced 107 18 within within IN cord-306414-2dv3qced 107 19 the the DT cord-306414-2dv3qced 107 20 entire entire JJ cord-306414-2dv3qced 107 21 organism organism NN cord-306414-2dv3qced 107 22 . . . cord-306414-2dv3qced 108 1 Interferon interferon NN cord-306414-2dv3qced 108 2 - - HYPH cord-306414-2dv3qced 108 3 γ γ NNP cord-306414-2dv3qced 108 4 ( ( -LRB- cord-306414-2dv3qced 108 5 IFN IFN NNP cord-306414-2dv3qced 108 6 - - HYPH cord-306414-2dv3qced 108 7 γ γ NNP cord-306414-2dv3qced 108 8 ) ) -RRB- cord-306414-2dv3qced 108 9 : : : cord-306414-2dv3qced 108 10 cytokine cytokine NN cord-306414-2dv3qced 108 11 that that WDT cord-306414-2dv3qced 108 12 has have VBZ cord-306414-2dv3qced 108 13 since since IN cord-306414-2dv3qced 108 14 been be VBN cord-306414-2dv3qced 108 15 characterized characterize VBN cord-306414-2dv3qced 108 16 as as IN cord-306414-2dv3qced 108 17 a a DT cord-306414-2dv3qced 108 18 homodimeric homodimeric NNP cord-306414-2dv3qced 108 19 glycoprotein glycoprotein NN cord-306414-2dv3qced 108 20 with with IN cord-306414-2dv3qced 108 21 pleiotropic pleiotropic JJ cord-306414-2dv3qced 108 22 immunologic immunologic JJ cord-306414-2dv3qced 108 23 functions function NNS cord-306414-2dv3qced 108 24 . . . cord-306414-2dv3qced 109 1 IFN IFN NNP cord-306414-2dv3qced 109 2 - - HYPH cord-306414-2dv3qced 109 3 γ γ NNP cord-306414-2dv3qced 109 4 is be VBZ cord-306414-2dv3qced 109 5 primarily primarily RB cord-306414-2dv3qced 109 6 secreted secrete VBN cord-306414-2dv3qced 109 7 by by IN cord-306414-2dv3qced 109 8 activated activate VBN cord-306414-2dv3qced 109 9 T T NNP cord-306414-2dv3qced 109 10 cells cell NNS cord-306414-2dv3qced 109 11 and and CC cord-306414-2dv3qced 109 12 natural natural JJ cord-306414-2dv3qced 109 13 killer killer NN cord-306414-2dv3qced 109 14 cells cell NNS cord-306414-2dv3qced 109 15 and and CC cord-306414-2dv3qced 109 16 can can MD cord-306414-2dv3qced 109 17 promote promote VB cord-306414-2dv3qced 109 18 macrophage macrophage NN cord-306414-2dv3qced 109 19 activation activation NN cord-306414-2dv3qced 109 20 , , , cord-306414-2dv3qced 109 21 mediate mediate VB cord-306414-2dv3qced 109 22 antiviral antiviral JJ cord-306414-2dv3qced 109 23 and and CC cord-306414-2dv3qced 109 24 antibacterial antibacterial JJ cord-306414-2dv3qced 109 25 immunity immunity NN cord-306414-2dv3qced 109 26 , , , cord-306414-2dv3qced 109 27 enhance enhance VB cord-306414-2dv3qced 109 28 antigen antigen NN cord-306414-2dv3qced 109 29 presentation presentation NN cord-306414-2dv3qced 109 30 , , , cord-306414-2dv3qced 109 31 orchestrate orchestrate VB cord-306414-2dv3qced 109 32 activation activation NN cord-306414-2dv3qced 109 33 of of IN cord-306414-2dv3qced 109 34 the the DT cord-306414-2dv3qced 109 35 innate innate JJ cord-306414-2dv3qced 109 36 immune immune JJ cord-306414-2dv3qced 109 37 system system NN cord-306414-2dv3qced 109 38 , , , cord-306414-2dv3qced 109 39 coordinate coordinate VB cord-306414-2dv3qced 109 40 lymphocyte lymphocyte NN cord-306414-2dv3qced 109 41 - - HYPH cord-306414-2dv3qced 109 42 endothelium endothelium NN cord-306414-2dv3qced 109 43 highly highly RB cord-306414-2dv3qced 109 44 conserved conserve VBN cord-306414-2dv3qced 109 45 SARS SARS NNP cord-306414-2dv3qced 109 46 - - HYPH cord-306414-2dv3qced 109 47 CoV-2 CoV-2 NNP cord-306414-2dv3qced 109 48 peptides peptide NNS cord-306414-2dv3qced 109 49 that that WDT cord-306414-2dv3qced 109 50 are be VBP cord-306414-2dv3qced 109 51 shared share VBN cord-306414-2dv3qced 109 52 among among IN cord-306414-2dv3qced 109 53 common common JJ cord-306414-2dv3qced 109 54 human human JJ cord-306414-2dv3qced 109 55 coronaviruses coronaviruse NNS cord-306414-2dv3qced 109 56 , , , cord-306414-2dv3qced 109 57 suggesting suggest VBG cord-306414-2dv3qced 109 58 a a DT cord-306414-2dv3qced 109 59 potential potential JJ cord-306414-2dv3qced 109 60 cross cross JJ cord-306414-2dv3qced 109 61 - - JJ cord-306414-2dv3qced 109 62 protective protective JJ cord-306414-2dv3qced 109 63 T t NN cord-306414-2dv3qced 109 64 cell cell NN cord-306414-2dv3qced 109 65 immunity immunity NN cord-306414-2dv3qced 109 66 [ [ -LRB- cord-306414-2dv3qced 109 67 48 48 CD cord-306414-2dv3qced 109 68 ] ] -RRB- cord-306414-2dv3qced 109 69 . . . cord-306414-2dv3qced 110 1 These these DT cord-306414-2dv3qced 110 2 observations observation NNS cord-306414-2dv3qced 110 3 raise raise VBP cord-306414-2dv3qced 110 4 the the DT cord-306414-2dv3qced 110 5 important important JJ cord-306414-2dv3qced 110 6 question question NN cord-306414-2dv3qced 110 7 of of IN cord-306414-2dv3qced 110 8 which which WDT cord-306414-2dv3qced 110 9 alleles allele NNS cord-306414-2dv3qced 110 10 confer confer VBP cord-306414-2dv3qced 110 11 susceptibility susceptibility NN cord-306414-2dv3qced 110 12 or or CC cord-306414-2dv3qced 110 13 resistance resistance NN cord-306414-2dv3qced 110 14 to to IN cord-306414-2dv3qced 110 15 the the DT cord-306414-2dv3qced 110 16 SARS SARS NNP cord-306414-2dv3qced 110 17 - - HYPH cord-306414-2dv3qced 110 18 CoV-2 CoV-2 NNP cord-306414-2dv3qced 110 19 infection infection NN cord-306414-2dv3qced 110 20 . . . cord-306414-2dv3qced 111 1 Unraveling unravel VBG cord-306414-2dv3qced 111 2 the the DT cord-306414-2dv3qced 111 3 TCR TCR NNP cord-306414-2dv3qced 111 4 Repertoire repertoire NN cord-306414-2dv3qced 111 5 to to TO cord-306414-2dv3qced 111 6 Decode decode VB cord-306414-2dv3qced 111 7 the the DT cord-306414-2dv3qced 111 8 Dynamic Dynamic NNP cord-306414-2dv3qced 111 9 of of IN cord-306414-2dv3qced 111 10 SARS SARS NNP cord-306414-2dv3qced 111 11 - - HYPH cord-306414-2dv3qced 111 12 CoV-2 CoV-2 NNP cord-306414-2dv3qced 111 13 Immune Immune NNP cord-306414-2dv3qced 111 14 Response response NN cord-306414-2dv3qced 112 1 A a DT cord-306414-2dv3qced 112 2 protective protective JJ cord-306414-2dv3qced 112 3 T t NN cord-306414-2dv3qced 112 4 cell cell NN cord-306414-2dv3qced 112 5 - - HYPH cord-306414-2dv3qced 112 6 driven drive VBN cord-306414-2dv3qced 112 7 immune immune JJ cord-306414-2dv3qced 112 8 response response NN cord-306414-2dv3qced 112 9 to to IN cord-306414-2dv3qced 112 10 unpredicted unpredicted JJ cord-306414-2dv3qced 112 11 antigens antigen NNS cord-306414-2dv3qced 112 12 requires require VBZ cord-306414-2dv3qced 112 13 the the DT cord-306414-2dv3qced 112 14 immune immune JJ cord-306414-2dv3qced 112 15 system system NN cord-306414-2dv3qced 112 16 to to TO cord-306414-2dv3qced 112 17 generate generate VB cord-306414-2dv3qced 112 18 a a DT cord-306414-2dv3qced 112 19 diverse diverse JJ cord-306414-2dv3qced 112 20 TCR TCR NNP cord-306414-2dv3qced 112 21 repertoire repertoire NN cord-306414-2dv3qced 112 22 that that WDT cord-306414-2dv3qced 112 23 is be VBZ cord-306414-2dv3qced 112 24 ready ready JJ cord-306414-2dv3qced 112 25 for for IN cord-306414-2dv3qced 112 26 any any DT cord-306414-2dv3qced 112 27 novel novel JJ cord-306414-2dv3qced 112 28 pathogen pathogen NN cord-306414-2dv3qced 112 29 / / SYM cord-306414-2dv3qced 112 30 antigen antigen NN cord-306414-2dv3qced 112 31 challenge challenge NN cord-306414-2dv3qced 112 32 , , , cord-306414-2dv3qced 112 33 such such JJ cord-306414-2dv3qced 112 34 as as IN cord-306414-2dv3qced 112 35 SARS SARS NNP cord-306414-2dv3qced 112 36 - - HYPH cord-306414-2dv3qced 112 37 CoV-2 CoV-2 NNP cord-306414-2dv3qced 112 38 . . . cord-306414-2dv3qced 113 1 Therefore therefore RB cord-306414-2dv3qced 113 2 , , , cord-306414-2dv3qced 113 3 the the DT cord-306414-2dv3qced 113 4 size size NN cord-306414-2dv3qced 113 5 and and CC cord-306414-2dv3qced 113 6 the the DT cord-306414-2dv3qced 113 7 diversity diversity NN cord-306414-2dv3qced 113 8 of of IN cord-306414-2dv3qced 113 9 the the DT cord-306414-2dv3qced 113 10 TCR TCR NNP cord-306414-2dv3qced 113 11 repertoire repertoire NN cord-306414-2dv3qced 113 12 are be VBP cord-306414-2dv3qced 113 13 major major JJ cord-306414-2dv3qced 113 14 determinants determinant NNS cord-306414-2dv3qced 113 15 of of IN cord-306414-2dv3qced 113 16 the the DT cord-306414-2dv3qced 113 17 immune immune JJ cord-306414-2dv3qced 113 18 response response NN cord-306414-2dv3qced 113 19 to to IN cord-306414-2dv3qced 113 20 a a DT cord-306414-2dv3qced 113 21 given give VBN cord-306414-2dv3qced 113 22 antigen antigen NN cord-306414-2dv3qced 113 23 [ [ -LRB- cord-306414-2dv3qced 113 24 50 50 CD cord-306414-2dv3qced 113 25 ] ] -RRB- cord-306414-2dv3qced 113 26 . . . cord-306414-2dv3qced 114 1 The the DT cord-306414-2dv3qced 114 2 TCR TCR NNP cord-306414-2dv3qced 114 3 repertoire repertoire NN cord-306414-2dv3qced 114 4 can can MD cord-306414-2dv3qced 114 5 be be VB cord-306414-2dv3qced 114 6 further further RB cord-306414-2dv3qced 114 7 divided divide VBN cord-306414-2dv3qced 114 8 into into IN cord-306414-2dv3qced 114 9 naive naive JJ cord-306414-2dv3qced 114 10 and and CC cord-306414-2dv3qced 114 11 memory memory NN cord-306414-2dv3qced 114 12 . . . cord-306414-2dv3qced 115 1 The the DT cord-306414-2dv3qced 115 2 naive naive JJ cord-306414-2dv3qced 115 3 TCR TCR NNP cord-306414-2dv3qced 115 4 repertoire repertoire NN cord-306414-2dv3qced 115 5 represents represent VBZ cord-306414-2dv3qced 115 6 the the DT cord-306414-2dv3qced 115 7 repertoire repertoire NN cord-306414-2dv3qced 115 8 of of IN cord-306414-2dv3qced 115 9 antigeninexperienced antigeninexperienced JJ cord-306414-2dv3qced 115 10 T T NNP cord-306414-2dv3qced 115 11 cells cell NNS cord-306414-2dv3qced 115 12 . . . cord-306414-2dv3qced 116 1 This this DT cord-306414-2dv3qced 116 2 population population NN cord-306414-2dv3qced 116 3 is be VBZ cord-306414-2dv3qced 116 4 shaped shape VBN cord-306414-2dv3qced 116 5 by by IN cord-306414-2dv3qced 116 6 thymopoiesis thymopoiesis NNP cord-306414-2dv3qced 116 7 , , , cord-306414-2dv3qced 116 8 which which WDT cord-306414-2dv3qced 116 9 introduces introduce VBZ cord-306414-2dv3qced 116 10 new new JJ cord-306414-2dv3qced 116 11 T T NNP cord-306414-2dv3qced 116 12 cell cell NN cord-306414-2dv3qced 116 13 clones clone NNS cord-306414-2dv3qced 116 14 and and CC cord-306414-2dv3qced 116 15 , , , cord-306414-2dv3qced 116 16 therefore therefore RB cord-306414-2dv3qced 116 17 , , , cord-306414-2dv3qced 116 18 new new JJ cord-306414-2dv3qced 116 19 antigen antigen NN cord-306414-2dv3qced 116 20 specificities specificity NNS cord-306414-2dv3qced 116 21 , , , cord-306414-2dv3qced 116 22 to to TO cord-306414-2dv3qced 116 23 diversify diversify VB cord-306414-2dv3qced 116 24 the the DT cord-306414-2dv3qced 116 25 TCR TCR NNP cord-306414-2dv3qced 116 26 repertoire repertoire NN cord-306414-2dv3qced 116 27 [ [ -LRB- cord-306414-2dv3qced 116 28 51 51 CD cord-306414-2dv3qced 116 29 ] ] -RRB- cord-306414-2dv3qced 116 30 . . . cord-306414-2dv3qced 117 1 Thymopoiesis Thymopoiesis NNP cord-306414-2dv3qced 117 2 can can MD cord-306414-2dv3qced 117 3 generate generate VB cord-306414-2dv3qced 117 4 SAR SAR NNP cord-306414-2dv3qced 117 5 - - HYPH cord-306414-2dv3qced 117 6 CoV-2 CoV-2 NNP cord-306414-2dv3qced 117 7 reactive reactive JJ cord-306414-2dv3qced 117 8 T t NN cord-306414-2dv3qced 117 9 cells cell NNS cord-306414-2dv3qced 117 10 where where WRB cord-306414-2dv3qced 117 11 they -PRON- PRP cord-306414-2dv3qced 117 12 have have VBP cord-306414-2dv3qced 117 13 not not RB cord-306414-2dv3qced 117 14 existed exist VBN cord-306414-2dv3qced 117 15 previously previously RB cord-306414-2dv3qced 117 16 . . . cord-306414-2dv3qced 118 1 The the DT cord-306414-2dv3qced 118 2 memory memory NN cord-306414-2dv3qced 118 3 TCR TCR NNP cord-306414-2dv3qced 118 4 repertoire repertoire NN cord-306414-2dv3qced 118 5 represents represent VBZ cord-306414-2dv3qced 118 6 the the DT cord-306414-2dv3qced 118 7 repertoire repertoire NN cord-306414-2dv3qced 118 8 of of IN cord-306414-2dv3qced 118 9 antigen antigen NN cord-306414-2dv3qced 118 10 - - HYPH cord-306414-2dv3qced 118 11 experienced experience VBN cord-306414-2dv3qced 118 12 T T NNP cord-306414-2dv3qced 118 13 cells cell NNS cord-306414-2dv3qced 118 14 . . . cord-306414-2dv3qced 119 1 It -PRON- PRP cord-306414-2dv3qced 119 2 is be VBZ cord-306414-2dv3qced 119 3 shaped shape VBN cord-306414-2dv3qced 119 4 by by IN cord-306414-2dv3qced 119 5 an an DT cord-306414-2dv3qced 119 6 individual individual NN cord-306414-2dv3qced 119 7 's 's POS cord-306414-2dv3qced 119 8 history history NN cord-306414-2dv3qced 119 9 of of IN cord-306414-2dv3qced 119 10 antigen antigen NN cord-306414-2dv3qced 119 11 exposure exposure NN cord-306414-2dv3qced 119 12 , , , cord-306414-2dv3qced 119 13 whereby whereby WRB cord-306414-2dv3qced 119 14 those those DT cord-306414-2dv3qced 119 15 T t NN cord-306414-2dv3qced 119 16 cells cell NNS cord-306414-2dv3qced 119 17 that that WDT cord-306414-2dv3qced 119 18 have have VBP cord-306414-2dv3qced 119 19 participated participate VBN cord-306414-2dv3qced 119 20 in in IN cord-306414-2dv3qced 119 21 immune immune JJ cord-306414-2dv3qced 119 22 responses response NNS cord-306414-2dv3qced 119 23 persist persist VBP cord-306414-2dv3qced 119 24 long long JJ cord-306414-2dv3qced 119 25 term term NN cord-306414-2dv3qced 119 26 . . . cord-306414-2dv3qced 120 1 Memory memory NN cord-306414-2dv3qced 120 2 T t CD cord-306414-2dv3qced 120 3 cells cell NNS cord-306414-2dv3qced 120 4 , , , cord-306414-2dv3qced 120 5 though though IN cord-306414-2dv3qced 120 6 they -PRON- PRP cord-306414-2dv3qced 120 7 have have VBP cord-306414-2dv3qced 120 8 been be VBN cord-306414-2dv3qced 120 9 selected select VBN cord-306414-2dv3qced 120 10 for for IN cord-306414-2dv3qced 120 11 by by IN cord-306414-2dv3qced 120 12 different different JJ cord-306414-2dv3qced 120 13 antigens antigen NNS cord-306414-2dv3qced 120 14 , , , cord-306414-2dv3qced 120 15 such such JJ cord-306414-2dv3qced 120 16 as as IN cord-306414-2dv3qced 120 17 those those DT cord-306414-2dv3qced 120 18 generated generate VBN cord-306414-2dv3qced 120 19 against against IN cord-306414-2dv3qced 120 20 prior prior JJ cord-306414-2dv3qced 120 21 coronaviruses coronaviruse NNS cord-306414-2dv3qced 120 22 , , , cord-306414-2dv3qced 120 23 may may MD cord-306414-2dv3qced 120 24 still still RB cord-306414-2dv3qced 120 25 generate generate VB cord-306414-2dv3qced 120 26 responses response NNS cord-306414-2dv3qced 120 27 against against IN cord-306414-2dv3qced 120 28 novel novel NN cord-306414-2dv3qced 120 29 viruses virus NNS cord-306414-2dv3qced 120 30 such such JJ cord-306414-2dv3qced 120 31 as as IN cord-306414-2dv3qced 120 32 the the DT cord-306414-2dv3qced 120 33 SARS SARS NNP cord-306414-2dv3qced 120 34 - - HYPH cord-306414-2dv3qced 120 35 CoV-2 CoV-2 NNP cord-306414-2dv3qced 120 36 [ [ -LRB- cord-306414-2dv3qced 120 37 52 52 CD cord-306414-2dv3qced 120 38 ] ] -RRB- cord-306414-2dv3qced 120 39 . . . cord-306414-2dv3qced 121 1 Indeed indeed RB cord-306414-2dv3qced 121 2 , , , cord-306414-2dv3qced 121 3 a a DT cord-306414-2dv3qced 121 4 recent recent JJ cord-306414-2dv3qced 121 5 study study NN cord-306414-2dv3qced 121 6 reported report VBD cord-306414-2dv3qced 121 7 that that IN cord-306414-2dv3qced 121 8 T t NN cord-306414-2dv3qced 121 9 cell cell NN cord-306414-2dv3qced 121 10 reactivity reactivity NN cord-306414-2dv3qced 121 11 to to IN cord-306414-2dv3qced 121 12 SARS SARS NNP cord-306414-2dv3qced 121 13 - - HYPH cord-306414-2dv3qced 121 14 CoV-2 CoV-2 NNP cord-306414-2dv3qced 121 15 epitopes epitope NNS cord-306414-2dv3qced 121 16 is be VBZ cord-306414-2dv3qced 121 17 also also RB cord-306414-2dv3qced 121 18 detected detect VBN cord-306414-2dv3qced 121 19 in in IN cord-306414-2dv3qced 121 20 nonexposed nonexpose VBN cord-306414-2dv3qced 121 21 individuals individual NNS cord-306414-2dv3qced 121 22 , , , cord-306414-2dv3qced 121 23 suggesting suggest VBG cord-306414-2dv3qced 121 24 crossreactive crossreactive NNP cord-306414-2dv3qced 121 25 T T NNP cord-306414-2dv3qced 121 26 cell cell NN cord-306414-2dv3qced 121 27 recognition recognition NN cord-306414-2dv3qced 121 28 between between IN cord-306414-2dv3qced 121 29 circulating circulate VBG cord-306414-2dv3qced 121 30 ' ' `` cord-306414-2dv3qced 121 31 common common JJ cord-306414-2dv3qced 121 32 cold cold NN cord-306414-2dv3qced 121 33 ' ' '' cord-306414-2dv3qced 121 34 coronaviruses coronaviruse NNS cord-306414-2dv3qced 121 35 and and CC cord-306414-2dv3qced 121 36 SARS SARS NNP cord-306414-2dv3qced 121 37 - - HYPH cord-306414-2dv3qced 121 38 CoV-2 CoV-2 NNP cord-306414-2dv3qced 121 39 [ [ -LRB- cord-306414-2dv3qced 121 40 53 53 CD cord-306414-2dv3qced 121 41 ] ] -RRB- cord-306414-2dv3qced 121 42 . . . cord-306414-2dv3qced 122 1 The the DT cord-306414-2dv3qced 122 2 development development NN cord-306414-2dv3qced 122 3 of of IN cord-306414-2dv3qced 122 4 faster fast JJR cord-306414-2dv3qced 122 5 and and CC cord-306414-2dv3qced 122 6 cheaper cheap JJR cord-306414-2dv3qced 122 7 sequencing sequencing NN cord-306414-2dv3qced 122 8 technologies technology NNS cord-306414-2dv3qced 122 9 , , , cord-306414-2dv3qced 122 10 augmented augment VBN cord-306414-2dv3qced 122 11 by by IN cord-306414-2dv3qced 122 12 the the DT cord-306414-2dv3qced 122 13 advances advance NNS cord-306414-2dv3qced 122 14 in in IN cord-306414-2dv3qced 122 15 computational computational JJ cord-306414-2dv3qced 122 16 tools tool NNS cord-306414-2dv3qced 122 17 , , , cord-306414-2dv3qced 122 18 support support VB cord-306414-2dv3qced 122 19 the the DT cord-306414-2dv3qced 122 20 feasibility feasibility NN cord-306414-2dv3qced 122 21 of of IN cord-306414-2dv3qced 122 22 using use VBG cord-306414-2dv3qced 122 23 TCR TCR NNP cord-306414-2dv3qced 122 24 analyses analysis NNS cord-306414-2dv3qced 122 25 not not RB cord-306414-2dv3qced 122 26 only only RB cord-306414-2dv3qced 122 27 to to TO cord-306414-2dv3qced 122 28 track track VB cord-306414-2dv3qced 122 29 SARS SARS NNP cord-306414-2dv3qced 122 30 - - HYPH cord-306414-2dv3qced 122 31 CoV-2specific CoV-2specific NNP cord-306414-2dv3qced 122 32 T T NNP cord-306414-2dv3qced 122 33 cell cell NN cord-306414-2dv3qced 122 34 expansion expansion NN cord-306414-2dv3qced 122 35 post post JJ cord-306414-2dv3qced 122 36 - - JJ cord-306414-2dv3qced 122 37 COVID-19 covid-19 JJ cord-306414-2dv3qced 122 38 infection infection NN cord-306414-2dv3qced 122 39 or or CC cord-306414-2dv3qced 122 40 in in IN cord-306414-2dv3qced 122 41 the the DT cord-306414-2dv3qced 122 42 course course NN cord-306414-2dv3qced 122 43 of of IN cord-306414-2dv3qced 122 44 treating treat VBG cord-306414-2dv3qced 122 45 patients patient NNS cord-306414-2dv3qced 122 46 with with IN cord-306414-2dv3qced 122 47 COVID-19 COVID-19 NNP cord-306414-2dv3qced 122 48 , , , cord-306414-2dv3qced 122 49 but but CC cord-306414-2dv3qced 122 50 also also RB cord-306414-2dv3qced 122 51 to to TO cord-306414-2dv3qced 122 52 establish establish VB cord-306414-2dv3qced 122 53 certain certain JJ cord-306414-2dv3qced 122 54 features feature NNS cord-306414-2dv3qced 122 55 of of IN cord-306414-2dv3qced 122 56 the the DT cord-306414-2dv3qced 122 57 TCR TCR NNP cord-306414-2dv3qced 122 58 repertoire repertoire NN cord-306414-2dv3qced 122 59 architecture architecture NN cord-306414-2dv3qced 122 60 as as IN cord-306414-2dv3qced 122 61 predictive predictive JJ cord-306414-2dv3qced 122 62 biomarkers biomarker NNS cord-306414-2dv3qced 122 63 for for IN cord-306414-2dv3qced 122 64 patients patient NNS cord-306414-2dv3qced 122 65 ' ' POS cord-306414-2dv3qced 122 66 clinical clinical JJ cord-306414-2dv3qced 122 67 outcome outcome NN cord-306414-2dv3qced 122 68 . . . cord-306414-2dv3qced 123 1 A a DT cord-306414-2dv3qced 123 2 recent recent JJ cord-306414-2dv3qced 123 3 study study NN cord-306414-2dv3qced 123 4 demonstrated demonstrate VBD cord-306414-2dv3qced 123 5 the the DT cord-306414-2dv3qced 123 6 feasibility feasibility NN cord-306414-2dv3qced 123 7 and and CC cord-306414-2dv3qced 123 8 value value NN cord-306414-2dv3qced 123 9 of of IN cord-306414-2dv3qced 123 10 these these DT cord-306414-2dv3qced 123 11 analyses analysis NNS cord-306414-2dv3qced 123 12 in in IN cord-306414-2dv3qced 123 13 patients patient NNS cord-306414-2dv3qced 123 14 with with IN cord-306414-2dv3qced 123 15 COVID-19 COVID-19 NNP cord-306414-2dv3qced 123 16 . . . cord-306414-2dv3qced 124 1 In in IN cord-306414-2dv3qced 124 2 ten ten CD cord-306414-2dv3qced 124 3 patients patient NNS cord-306414-2dv3qced 124 4 with with IN cord-306414-2dv3qced 124 5 either either CC cord-306414-2dv3qced 124 6 early early JJ cord-306414-2dv3qced 124 7 recovery recovery NN cord-306414-2dv3qced 124 8 stage stage NN cord-306414-2dv3qced 124 9 or or CC cord-306414-2dv3qced 124 10 late late JJ cord-306414-2dv3qced 124 11 recovery recovery NN cord-306414-2dv3qced 124 12 stage stage NN cord-306414-2dv3qced 125 1 COVID-19 covid-19 VB cord-306414-2dv3qced 125 2 and and CC cord-306414-2dv3qced 125 3 five five CD cord-306414-2dv3qced 125 4 healthy healthy JJ cord-306414-2dv3qced 125 5 donors donor NNS cord-306414-2dv3qced 125 6 , , , cord-306414-2dv3qced 125 7 TCR TCR NNP cord-306414-2dv3qced 125 8 - - HYPH cord-306414-2dv3qced 125 9 seq seq NNP cord-306414-2dv3qced 125 10 analysis analysis NN cord-306414-2dv3qced 125 11 showed show VBD cord-306414-2dv3qced 125 12 that that IN cord-306414-2dv3qced 125 13 T T NNP cord-306414-2dv3qced 125 14 cell cell NN cord-306414-2dv3qced 125 15 expansion expansion NN cord-306414-2dv3qced 125 16 was be VBD cord-306414-2dv3qced 125 17 lower low JJR cord-306414-2dv3qced 125 18 in in IN cord-306414-2dv3qced 125 19 the the DT cord-306414-2dv3qced 125 20 early early JJ cord-306414-2dv3qced 125 21 recovery recovery NN cord-306414-2dv3qced 125 22 group group NN cord-306414-2dv3qced 125 23 than than IN cord-306414-2dv3qced 125 24 in in IN cord-306414-2dv3qced 125 25 the the DT cord-306414-2dv3qced 125 26 healthy healthy JJ cord-306414-2dv3qced 125 27 control control NN cord-306414-2dv3qced 125 28 group group NN cord-306414-2dv3qced 125 29 . . . cord-306414-2dv3qced 126 1 Also also RB cord-306414-2dv3qced 126 2 , , , cord-306414-2dv3qced 126 3 the the DT cord-306414-2dv3qced 126 4 naïve naïve JJ cord-306414-2dv3qced 126 5 or or CC cord-306414-2dv3qced 126 6 central central JJ cord-306414-2dv3qced 126 7 memory memory NN cord-306414-2dv3qced 126 8 T T NNP cord-306414-2dv3qced 126 9 cells cell NNS cord-306414-2dv3qced 126 10 showed show VBD cord-306414-2dv3qced 126 11 little little JJ cord-306414-2dv3qced 126 12 clonal clonal JJ cord-306414-2dv3qced 126 13 expansion expansion NN cord-306414-2dv3qced 126 14 , , , cord-306414-2dv3qced 126 15 while while IN cord-306414-2dv3qced 126 16 effector effector NN cord-306414-2dv3qced 126 17 memory memory NN cord-306414-2dv3qced 126 18 T T NNP cord-306414-2dv3qced 126 19 cells cell NNS cord-306414-2dv3qced 126 20 , , , cord-306414-2dv3qced 126 21 terminal terminal NN cord-306414-2dv3qced 126 22 effector effector NN cord-306414-2dv3qced 126 23 CD8 CD8 NNP cord-306414-2dv3qced 126 24 + + CC cord-306414-2dv3qced 126 25 T T NNP cord-306414-2dv3qced 126 26 cells cell NNS cord-306414-2dv3qced 126 27 , , , cord-306414-2dv3qced 126 28 and and CC cord-306414-2dv3qced 126 29 proliferating proliferate VBG cord-306414-2dv3qced 126 30 T t NN cord-306414-2dv3qced 126 31 cells cell NNS cord-306414-2dv3qced 126 32 showed show VBD cord-306414-2dv3qced 126 33 higher high JJR cord-306414-2dv3qced 126 34 expansion expansion NN cord-306414-2dv3qced 126 35 levels level NNS cord-306414-2dv3qced 126 36 . . . cord-306414-2dv3qced 127 1 The the DT cord-306414-2dv3qced 127 2 study study NN cord-306414-2dv3qced 127 3 found find VBD cord-306414-2dv3qced 127 4 that that IN cord-306414-2dv3qced 127 5 the the DT cord-306414-2dv3qced 127 6 most most RBS cord-306414-2dv3qced 127 7 highly highly RB cord-306414-2dv3qced 127 8 expanded expand VBN cord-306414-2dv3qced 127 9 clone clone NN cord-306414-2dv3qced 127 10 in in IN cord-306414-2dv3qced 127 11 the the DT cord-306414-2dv3qced 127 12 early early JJ cord-306414-2dv3qced 127 13 recovered recover VBN cord-306414-2dv3qced 127 14 group group NN cord-306414-2dv3qced 127 15 was be VBD cord-306414-2dv3qced 127 16 TRAV8 trav8 NN cord-306414-2dv3qced 127 17 - - : cord-306414-2dv3qced 127 18 6-TRAJ45 6-traj45 CD cord-306414-2dv3qced 127 19 : : : cord-306414-2dv3qced 128 1 TRAV7 TRAV7 NNP cord-306414-2dv3qced 128 2 - - HYPH cord-306414-2dv3qced 128 3 8-TRBJ2 8-trbj2 CD cord-306414-2dv3qced 128 4 - - SYM cord-306414-2dv3qced 128 5 1 1 CD cord-306414-2dv3qced 128 6 [ [ -LRB- cord-306414-2dv3qced 128 7 54 54 CD cord-306414-2dv3qced 128 8 ] ] -RRB- cord-306414-2dv3qced 128 9 . . . cord-306414-2dv3qced 129 1 Thus thus RB cord-306414-2dv3qced 129 2 , , , cord-306414-2dv3qced 129 3 a a DT cord-306414-2dv3qced 129 4 comprehensive comprehensive JJ cord-306414-2dv3qced 129 5 characterization characterization NN cord-306414-2dv3qced 129 6 of of IN cord-306414-2dv3qced 129 7 the the DT cord-306414-2dv3qced 129 8 dynamics dynamic NNS cord-306414-2dv3qced 129 9 and and CC cord-306414-2dv3qced 129 10 composition composition NN cord-306414-2dv3qced 129 11 of of IN cord-306414-2dv3qced 129 12 the the DT cord-306414-2dv3qced 129 13 TCR TCR NNP cord-306414-2dv3qced 129 14 repertoires repertoire NNS cord-306414-2dv3qced 129 15 to to IN cord-306414-2dv3qced 129 16 SARS SARS NNP cord-306414-2dv3qced 129 17 - - HYPH cord-306414-2dv3qced 129 18 CoV-2 CoV-2 NNP cord-306414-2dv3qced 129 19 infection infection NN cord-306414-2dv3qced 129 20 can can MD cord-306414-2dv3qced 129 21 largely largely RB cord-306414-2dv3qced 129 22 contribute contribute VB cord-306414-2dv3qced 129 23 to to IN cord-306414-2dv3qced 129 24 the the DT cord-306414-2dv3qced 129 25 evolving evolve VBG cord-306414-2dv3qced 129 26 understanding understanding NN cord-306414-2dv3qced 129 27 of of IN cord-306414-2dv3qced 129 28 the the DT cord-306414-2dv3qced 129 29 functional functional JJ cord-306414-2dv3qced 129 30 and and CC cord-306414-2dv3qced 129 31 mechanistic mechanistic JJ cord-306414-2dv3qced 129 32 involvement involvement NN cord-306414-2dv3qced 129 33 of of IN cord-306414-2dv3qced 129 34 the the DT cord-306414-2dv3qced 129 35 adaptive adaptive JJ cord-306414-2dv3qced 129 36 immune immune JJ cord-306414-2dv3qced 129 37 cell cell NN cord-306414-2dv3qced 129 38 response response NN cord-306414-2dv3qced 129 39 and and CC cord-306414-2dv3qced 129 40 potentially potentially RB cord-306414-2dv3qced 129 41 guide guide VB cord-306414-2dv3qced 129 42 the the DT cord-306414-2dv3qced 129 43 design design NN cord-306414-2dv3qced 129 44 of of IN cord-306414-2dv3qced 129 45 effective effective JJ cord-306414-2dv3qced 129 46 treatment treatment NN cord-306414-2dv3qced 129 47 . . . cord-306414-2dv3qced 130 1 Here here RB cord-306414-2dv3qced 130 2 we -PRON- PRP cord-306414-2dv3qced 130 3 summarize summarize VBP cord-306414-2dv3qced 130 4 some some DT cord-306414-2dv3qced 130 5 of of IN cord-306414-2dv3qced 130 6 the the DT cord-306414-2dv3qced 130 7 most most RBS cord-306414-2dv3qced 130 8 relevant relevant JJ cord-306414-2dv3qced 130 9 clinical clinical JJ cord-306414-2dv3qced 130 10 applications application NNS cord-306414-2dv3qced 130 11 of of IN cord-306414-2dv3qced 130 12 obtaining obtain VBG cord-306414-2dv3qced 130 13 comprehensive comprehensive JJ cord-306414-2dv3qced 130 14 TCR TCR NNP cord-306414-2dv3qced 130 15 repertoire repertoire NN cord-306414-2dv3qced 130 16 data datum NNS cord-306414-2dv3qced 130 17 in in IN cord-306414-2dv3qced 130 18 the the DT cord-306414-2dv3qced 130 19 setting setting NN cord-306414-2dv3qced 130 20 of of IN cord-306414-2dv3qced 130 21 COVID-19 covid-19 NN cord-306414-2dv3qced 130 22 . . . cord-306414-2dv3qced 131 1 Recent recent JJ cord-306414-2dv3qced 131 2 efforts effort NNS cord-306414-2dv3qced 131 3 have have VBP cord-306414-2dv3qced 131 4 focused focus VBN cord-306414-2dv3qced 131 5 on on IN cord-306414-2dv3qced 131 6 identifying identify VBG cord-306414-2dv3qced 131 7 shared share VBN cord-306414-2dv3qced 131 8 motifs motif NNS cord-306414-2dv3qced 131 9 in in IN cord-306414-2dv3qced 131 10 core core NN cord-306414-2dv3qced 131 11 sequences sequence NNS cord-306414-2dv3qced 131 12 to to TO cord-306414-2dv3qced 131 13 predict predict VB cord-306414-2dv3qced 131 14 conserved conserved JJ cord-306414-2dv3qced 131 15 residues residue NNS cord-306414-2dv3qced 131 16 driving drive VBG cord-306414-2dv3qced 131 17 essential essential JJ cord-306414-2dv3qced 131 18 elements element NNS cord-306414-2dv3qced 131 19 of of IN cord-306414-2dv3qced 131 20 TCR TCR NNP cord-306414-2dv3qced 131 21 recognition recognition NNP cord-306414-2dv3qced 131 22 [ [ -LRB- cord-306414-2dv3qced 131 23 22 22 CD cord-306414-2dv3qced 131 24 , , , cord-306414-2dv3qced 131 25 55 55 CD cord-306414-2dv3qced 131 26 ] ] -RRB- cord-306414-2dv3qced 131 27 . . . cord-306414-2dv3qced 132 1 As as IN cord-306414-2dv3qced 132 2 with with IN cord-306414-2dv3qced 132 3 any any DT cord-306414-2dv3qced 132 4 other other JJ cord-306414-2dv3qced 132 5 viral viral JJ cord-306414-2dv3qced 132 6 infection infection NN cord-306414-2dv3qced 132 7 , , , cord-306414-2dv3qced 132 8 the the DT cord-306414-2dv3qced 132 9 ability ability NN cord-306414-2dv3qced 132 10 of of IN cord-306414-2dv3qced 132 11 individuals individual NNS cord-306414-2dv3qced 132 12 ' ' POS cord-306414-2dv3qced 132 13 TCR TCR NNP cord-306414-2dv3qced 132 14 repertoire repertoire NN cord-306414-2dv3qced 132 15 to to IN cord-306414-2dv3qced 133 1 effectively effectively RB cord-306414-2dv3qced 133 2 clear clear JJ cord-306414-2dv3qced 133 3 SARS SARS NNP cord-306414-2dv3qced 133 4 - - HYPH cord-306414-2dv3qced 133 5 CoV-2 CoV-2 NNP cord-306414-2dv3qced 133 6 infection infection NN cord-306414-2dv3qced 133 7 is be VBZ cord-306414-2dv3qced 133 8 highly highly RB cord-306414-2dv3qced 133 9 dependent dependent JJ cord-306414-2dv3qced 133 10 on on IN cord-306414-2dv3qced 133 11 its -PRON- PRP$ cord-306414-2dv3qced 133 12 composition composition NN cord-306414-2dv3qced 133 13 . . . cord-306414-2dv3qced 134 1 Epitope epitope NN cord-306414-2dv3qced 134 2 - - HYPH cord-306414-2dv3qced 134 3 specific specific JJ cord-306414-2dv3qced 134 4 T t NN cord-306414-2dv3qced 134 5 cells cell NNS cord-306414-2dv3qced 134 6 have have VBP cord-306414-2dv3qced 134 7 been be VBN cord-306414-2dv3qced 134 8 identified identify VBN cord-306414-2dv3qced 134 9 in in IN cord-306414-2dv3qced 134 10 a a DT cord-306414-2dv3qced 134 11 study study NN cord-306414-2dv3qced 134 12 using use VBG cord-306414-2dv3qced 134 13 samples sample NNS cord-306414-2dv3qced 134 14 obtained obtain VBN cord-306414-2dv3qced 134 15 from from IN cord-306414-2dv3qced 134 16 individuals individual NNS cord-306414-2dv3qced 134 17 previously previously RB cord-306414-2dv3qced 134 18 infected infect VBN cord-306414-2dv3qced 134 19 with with IN cord-306414-2dv3qced 134 20 SARS SARS NNP cord-306414-2dv3qced 134 21 - - HYPH cord-306414-2dv3qced 134 22 CoV CoV NNP cord-306414-2dv3qced 134 23 [ [ -LRB- cord-306414-2dv3qced 134 24 56 56 CD cord-306414-2dv3qced 134 25 ] ] -RRB- cord-306414-2dv3qced 134 26 . . . cord-306414-2dv3qced 135 1 Similarly similarly RB cord-306414-2dv3qced 135 2 , , , cord-306414-2dv3qced 135 3 another another DT cord-306414-2dv3qced 135 4 study study NN cord-306414-2dv3qced 135 5 demonstrated demonstrate VBD cord-306414-2dv3qced 135 6 the the DT cord-306414-2dv3qced 135 7 presence presence NN cord-306414-2dv3qced 135 8 of of IN cord-306414-2dv3qced 135 9 epitope epitope NN cord-306414-2dv3qced 135 10 - - HYPH cord-306414-2dv3qced 135 11 specific specific JJ cord-306414-2dv3qced 135 12 public public JJ cord-306414-2dv3qced 135 13 T t NN cord-306414-2dv3qced 135 14 cells cell NNS cord-306414-2dv3qced 135 15 in in IN cord-306414-2dv3qced 135 16 both both CC cord-306414-2dv3qced 135 17 healthy healthy JJ cord-306414-2dv3qced 135 18 and and CC cord-306414-2dv3qced 135 19 influenzainfected influenzainfected JJ cord-306414-2dv3qced 135 20 patients patient NNS cord-306414-2dv3qced 135 21 [ [ -LRB- cord-306414-2dv3qced 135 22 32 32 CD cord-306414-2dv3qced 135 23 ] ] -RRB- cord-306414-2dv3qced 135 24 . . . cord-306414-2dv3qced 136 1 These these DT cord-306414-2dv3qced 136 2 studies study NNS cord-306414-2dv3qced 136 3 show show VBP cord-306414-2dv3qced 136 4 a a DT cord-306414-2dv3qced 136 5 correlation correlation NN cord-306414-2dv3qced 136 6 between between IN cord-306414-2dv3qced 136 7 the the DT cord-306414-2dv3qced 136 8 presence presence NN cord-306414-2dv3qced 136 9 of of IN cord-306414-2dv3qced 136 10 specific specific JJ cord-306414-2dv3qced 136 11 T T NNP cord-306414-2dv3qced 136 12 cell cell NN cord-306414-2dv3qced 136 13 clones clone NNS cord-306414-2dv3qced 136 14 and and CC cord-306414-2dv3qced 136 15 antiviral antiviral JJ cord-306414-2dv3qced 136 16 immunity immunity NN cord-306414-2dv3qced 136 17 . . . cord-306414-2dv3qced 137 1 Beyond beyond IN cord-306414-2dv3qced 137 2 identifying identify VBG cord-306414-2dv3qced 137 3 specific specific JJ cord-306414-2dv3qced 137 4 clones clone NNS cord-306414-2dv3qced 137 5 , , , cord-306414-2dv3qced 137 6 TCRβ tcrβ NN cord-306414-2dv3qced 137 7 profiling profiling NN cord-306414-2dv3qced 137 8 has have VBZ cord-306414-2dv3qced 137 9 demonstrated demonstrate VBN cord-306414-2dv3qced 137 10 interaction interaction NN cord-306414-2dv3qced 137 11 , , , cord-306414-2dv3qced 137 12 regulate regulate VB cord-306414-2dv3qced 137 13 Th1 th1 CD cord-306414-2dv3qced 137 14 / / SYM cord-306414-2dv3qced 137 15 Th2 th2 CD cord-306414-2dv3qced 137 16 balance balance NN cord-306414-2dv3qced 137 17 , , , cord-306414-2dv3qced 137 18 and and CC cord-306414-2dv3qced 137 19 control control VB cord-306414-2dv3qced 137 20 cellular cellular JJ cord-306414-2dv3qced 137 21 proliferation proliferation NN cord-306414-2dv3qced 137 22 and and CC cord-306414-2dv3qced 137 23 apoptosis apoptosis NN cord-306414-2dv3qced 137 24 . . . cord-306414-2dv3qced 138 1 Memory Memory NNP cord-306414-2dv3qced 138 2 T t CD cord-306414-2dv3qced 138 3 cells cell NNS cord-306414-2dv3qced 138 4 : : : cord-306414-2dv3qced 138 5 a a DT cord-306414-2dv3qced 138 6 CD8 CD8 NNP cord-306414-2dv3qced 138 7 T T NNP cord-306414-2dv3qced 138 8 cell cell NN cord-306414-2dv3qced 138 9 that that WDT cord-306414-2dv3qced 138 10 has have VBZ cord-306414-2dv3qced 138 11 responded respond VBN cord-306414-2dv3qced 138 12 to to IN cord-306414-2dv3qced 138 13 cognate cognate JJ cord-306414-2dv3qced 138 14 antigen antigen NN cord-306414-2dv3qced 138 15 ( ( -LRB- cord-306414-2dv3qced 138 16 Ag Ag NNP cord-306414-2dv3qced 138 17 ) ) -RRB- cord-306414-2dv3qced 138 18 and and CC cord-306414-2dv3qced 138 19 persists persist VBZ cord-306414-2dv3qced 138 20 long long JJ cord-306414-2dv3qced 138 21 - - HYPH cord-306414-2dv3qced 138 22 term term NN cord-306414-2dv3qced 138 23 . . . cord-306414-2dv3qced 139 1 These these DT cord-306414-2dv3qced 139 2 cells cell NNS cord-306414-2dv3qced 139 3 can can MD cord-306414-2dv3qced 139 4 populate populate VB cord-306414-2dv3qced 139 5 peripherally peripherally RB cord-306414-2dv3qced 139 6 and and CC cord-306414-2dv3qced 139 7 are be VBP cord-306414-2dv3qced 139 8 poised poise VBN cord-306414-2dv3qced 139 9 to to TO cord-306414-2dv3qced 139 10 immediately immediately RB cord-306414-2dv3qced 139 11 proliferate proliferate VB cord-306414-2dv3qced 139 12 , , , cord-306414-2dv3qced 139 13 execute execute VB cord-306414-2dv3qced 139 14 cytotoxic cytotoxic JJ cord-306414-2dv3qced 139 15 functions function NNS cord-306414-2dv3qced 139 16 , , , cord-306414-2dv3qced 139 17 and and CC cord-306414-2dv3qced 139 18 secrete secrete JJ cord-306414-2dv3qced 139 19 effector effector NN cord-306414-2dv3qced 139 20 cytokines cytokine NNS cord-306414-2dv3qced 139 21 upon upon IN cord-306414-2dv3qced 139 22 Ag Ag NNP cord-306414-2dv3qced 139 23 re re NN cord-306414-2dv3qced 139 24 - - NN cord-306414-2dv3qced 139 25 encounter encounter NN cord-306414-2dv3qced 139 26 and and CC cord-306414-2dv3qced 139 27 exist exist VBP cord-306414-2dv3qced 139 28 in in IN cord-306414-2dv3qced 139 29 different different JJ cord-306414-2dv3qced 139 30 metabolic metabolic JJ cord-306414-2dv3qced 139 31 , , , cord-306414-2dv3qced 139 32 transcriptional transcriptional JJ cord-306414-2dv3qced 139 33 , , , cord-306414-2dv3qced 139 34 and and CC cord-306414-2dv3qced 139 35 epigenetic epigenetic JJ cord-306414-2dv3qced 139 36 states state NNS cord-306414-2dv3qced 139 37 . . . cord-306414-2dv3qced 140 1 Naïve naïve JJ cord-306414-2dv3qced 140 2 T T NNP cord-306414-2dv3qced 140 3 cell cell NN cord-306414-2dv3qced 140 4 : : : cord-306414-2dv3qced 140 5 a a DT cord-306414-2dv3qced 140 6 T T NNP cord-306414-2dv3qced 140 7 cell cell NN cord-306414-2dv3qced 140 8 pool pool NN cord-306414-2dv3qced 140 9 that that WDT cord-306414-2dv3qced 140 10 is be VBZ cord-306414-2dv3qced 140 11 generally generally RB cord-306414-2dv3qced 140 12 considered consider VBN cord-306414-2dv3qced 140 13 to to TO cord-306414-2dv3qced 140 14 be be VB cord-306414-2dv3qced 140 15 a a DT cord-306414-2dv3qced 140 16 fairly fairly RB cord-306414-2dv3qced 140 17 quiescent quiescent JJ cord-306414-2dv3qced 140 18 , , , cord-306414-2dv3qced 140 19 homogeneous homogeneous JJ cord-306414-2dv3qced 140 20 pool pool NN cord-306414-2dv3qced 140 21 of of IN cord-306414-2dv3qced 140 22 antigen antigen NN cord-306414-2dv3qced 140 23 - - HYPH cord-306414-2dv3qced 140 24 inexperienced inexperienced JJ cord-306414-2dv3qced 140 25 cells cell NNS cord-306414-2dv3qced 140 26 . . . cord-306414-2dv3qced 141 1 In in IN cord-306414-2dv3qced 141 2 response response NN cord-306414-2dv3qced 141 3 to to IN cord-306414-2dv3qced 141 4 encountering encounter VBG cord-306414-2dv3qced 141 5 and and CC cord-306414-2dv3qced 141 6 interacting interact VBG cord-306414-2dv3qced 141 7 with with IN cord-306414-2dv3qced 141 8 cognate cognate JJ cord-306414-2dv3qced 141 9 antigens antigen NNS cord-306414-2dv3qced 141 10 in in IN cord-306414-2dv3qced 141 11 the the DT cord-306414-2dv3qced 141 12 periphery periphery NN cord-306414-2dv3qced 141 13 , , , cord-306414-2dv3qced 141 14 naive naive JJ cord-306414-2dv3qced 141 15 T t NN cord-306414-2dv3qced 141 16 cells cell NNS cord-306414-2dv3qced 141 17 will will MD cord-306414-2dv3qced 141 18 proliferate proliferate VB cord-306414-2dv3qced 141 19 and and CC cord-306414-2dv3qced 141 20 differentiate differentiate VB cord-306414-2dv3qced 141 21 into into IN cord-306414-2dv3qced 141 22 different different JJ cord-306414-2dv3qced 141 23 types type NNS cord-306414-2dv3qced 141 24 of of IN cord-306414-2dv3qced 141 25 effector effector NN cord-306414-2dv3qced 141 26 and and CC cord-306414-2dv3qced 141 27 memory memory NN cord-306414-2dv3qced 141 28 T t NN cord-306414-2dv3qced 141 29 cells cell NNS cord-306414-2dv3qced 141 30 , , , cord-306414-2dv3qced 141 31 which which WDT cord-306414-2dv3qced 141 32 can can MD cord-306414-2dv3qced 141 33 migrate migrate VB cord-306414-2dv3qced 141 34 to to IN cord-306414-2dv3qced 141 35 different different JJ cord-306414-2dv3qced 141 36 tissues tissue NNS cord-306414-2dv3qced 141 37 for for IN cord-306414-2dv3qced 141 38 local local JJ cord-306414-2dv3qced 141 39 antigen antigen NN cord-306414-2dv3qced 141 40 patrol patrol NN cord-306414-2dv3qced 141 41 . . . cord-306414-2dv3qced 142 1 Public Public NNP cord-306414-2dv3qced 142 2 T T NNP cord-306414-2dv3qced 142 3 cells cell NNS cord-306414-2dv3qced 142 4 : : : cord-306414-2dv3qced 142 5 refers refer VBZ cord-306414-2dv3qced 142 6 to to IN cord-306414-2dv3qced 142 7 T t NN cord-306414-2dv3qced 142 8 cells cell NNS cord-306414-2dv3qced 142 9 that that WDT cord-306414-2dv3qced 142 10 carry carry VBP cord-306414-2dv3qced 142 11 TCR TCR NNP cord-306414-2dv3qced 142 12 sequences sequence NNS cord-306414-2dv3qced 142 13 that that WDT cord-306414-2dv3qced 142 14 occur occur VBP cord-306414-2dv3qced 142 15 in in IN cord-306414-2dv3qced 142 16 multiple multiple JJ cord-306414-2dv3qced 142 17 unrelated unrelated JJ cord-306414-2dv3qced 142 18 individuals individual NNS cord-306414-2dv3qced 142 19 , , , cord-306414-2dv3qced 142 20 often often RB cord-306414-2dv3qced 142 21 in in IN cord-306414-2dv3qced 142 22 response response NN cord-306414-2dv3qced 142 23 to to IN cord-306414-2dv3qced 142 24 the the DT cord-306414-2dv3qced 142 25 same same JJ cord-306414-2dv3qced 142 26 antigen antigen NN cord-306414-2dv3qced 142 27 . . . cord-306414-2dv3qced 143 1 Severe severe JJ cord-306414-2dv3qced 143 2 acute acute JJ cord-306414-2dv3qced 143 3 respiratory respiratory JJ cord-306414-2dv3qced 143 4 syndrome syndrome NN cord-306414-2dv3qced 143 5 coronavirus coronavirus NN cord-306414-2dv3qced 143 6 2 2 CD cord-306414-2dv3qced 144 1 ( ( -LRB- cord-306414-2dv3qced 144 2 SARS SARS NNP cord-306414-2dv3qced 144 3 - - HYPH cord-306414-2dv3qced 144 4 CoV-2 CoV-2 NNP cord-306414-2dv3qced 144 5 ) ) -RRB- cord-306414-2dv3qced 144 6 : : : cord-306414-2dv3qced 144 7 severe severe JJ cord-306414-2dv3qced 144 8 acute acute JJ cord-306414-2dv3qced 144 9 respiratory respiratory JJ cord-306414-2dv3qced 144 10 syndrome syndrome NN cord-306414-2dv3qced 144 11 ( ( -LRB- cord-306414-2dv3qced 144 12 SARS)-like sars)-like CD cord-306414-2dv3qced 144 13 coronavirus coronavirus NN cord-306414-2dv3qced 144 14 that that WDT cord-306414-2dv3qced 144 15 belongs belong VBZ cord-306414-2dv3qced 144 16 to to IN cord-306414-2dv3qced 144 17 the the DT cord-306414-2dv3qced 144 18 family family NN cord-306414-2dv3qced 144 19 Coronaviridae Coronaviridae NNP cord-306414-2dv3qced 144 20 and and CC cord-306414-2dv3qced 144 21 the the DT cord-306414-2dv3qced 144 22 subfamily subfamily NN cord-306414-2dv3qced 144 23 Coronavirinae Coronavirinae NNP cord-306414-2dv3qced 144 24 . . . cord-306414-2dv3qced 145 1 It -PRON- PRP cord-306414-2dv3qced 145 2 uses use VBZ cord-306414-2dv3qced 145 3 the the DT cord-306414-2dv3qced 145 4 angiotensinconverting angiotensinconverting NN cord-306414-2dv3qced 145 5 enzyme enzyme NN cord-306414-2dv3qced 145 6 2 2 CD cord-306414-2dv3qced 145 7 ( ( -LRB- cord-306414-2dv3qced 145 8 ACE ACE NNP cord-306414-2dv3qced 145 9 2 2 CD cord-306414-2dv3qced 145 10 ) ) -RRB- cord-306414-2dv3qced 145 11 receptor receptor NN cord-306414-2dv3qced 145 12 to to TO cord-306414-2dv3qced 145 13 enter enter VB cord-306414-2dv3qced 145 14 into into IN cord-306414-2dv3qced 145 15 the the DT cord-306414-2dv3qced 145 16 human human JJ cord-306414-2dv3qced 145 17 cells cell NNS cord-306414-2dv3qced 145 18 . . . cord-306414-2dv3qced 146 1 It -PRON- PRP cord-306414-2dv3qced 146 2 is be VBZ cord-306414-2dv3qced 146 3 the the DT cord-306414-2dv3qced 146 4 causative causative JJ cord-306414-2dv3qced 146 5 agent agent NN cord-306414-2dv3qced 146 6 of of IN cord-306414-2dv3qced 146 7 COVID-19 COVID-19 NNP cord-306414-2dv3qced 146 8 . . . cord-306414-2dv3qced 147 1 T T NNP cord-306414-2dv3qced 147 2 cell cell NN cord-306414-2dv3qced 147 3 : : : cord-306414-2dv3qced 147 4 white white JJ cord-306414-2dv3qced 147 5 blood blood NN cord-306414-2dv3qced 147 6 cells cell NNS cord-306414-2dv3qced 147 7 that that WDT cord-306414-2dv3qced 147 8 are be VBP cord-306414-2dv3qced 147 9 important important JJ cord-306414-2dv3qced 147 10 for for IN cord-306414-2dv3qced 147 11 adaptive adaptive JJ cord-306414-2dv3qced 147 12 immunity immunity NN cord-306414-2dv3qced 147 13 . . . cord-306414-2dv3qced 148 1 They -PRON- PRP cord-306414-2dv3qced 148 2 have have VBP cord-306414-2dv3qced 148 3 unique unique JJ cord-306414-2dv3qced 148 4 cell cell NN cord-306414-2dv3qced 148 5 surface surface NN cord-306414-2dv3qced 148 6 receptors receptor NNS cord-306414-2dv3qced 148 7 that that WDT cord-306414-2dv3qced 148 8 are be VBP cord-306414-2dv3qced 148 9 generated generate VBN cord-306414-2dv3qced 148 10 by by IN cord-306414-2dv3qced 148 11 randomly randomly RB cord-306414-2dv3qced 148 12 assorting assort VBG cord-306414-2dv3qced 148 13 genes gene NNS cord-306414-2dv3qced 148 14 . . . cord-306414-2dv3qced 149 1 These these DT cord-306414-2dv3qced 149 2 receptors receptor NNS cord-306414-2dv3qced 149 3 allow allow VBP cord-306414-2dv3qced 149 4 T t NN cord-306414-2dv3qced 149 5 cells cell NNS cord-306414-2dv3qced 149 6 to to IN cord-306414-2dv3qced 149 7 sense sense VB cord-306414-2dv3qced 149 8 and and CC cord-306414-2dv3qced 149 9 respond respond VB cord-306414-2dv3qced 149 10 to to IN cord-306414-2dv3qced 149 11 diverse diverse JJ cord-306414-2dv3qced 149 12 types type NNS cord-306414-2dv3qced 149 13 of of IN cord-306414-2dv3qced 149 14 infection infection NN cord-306414-2dv3qced 149 15 . . . cord-306414-2dv3qced 150 1 T T NNP cord-306414-2dv3qced 150 2 cell cell NN cord-306414-2dv3qced 150 3 receptor receptor NN cord-306414-2dv3qced 150 4 ( ( -LRB- cord-306414-2dv3qced 150 5 TCR TCR NNP cord-306414-2dv3qced 150 6 ) ) -RRB- cord-306414-2dv3qced 150 7 : : : cord-306414-2dv3qced 150 8 protein protein NN cord-306414-2dv3qced 150 9 that that WDT cord-306414-2dv3qced 150 10 recognizes recognize VBZ cord-306414-2dv3qced 150 11 small small JJ cord-306414-2dv3qced 150 12 protein protein NN cord-306414-2dv3qced 150 13 fragments fragment NNS cord-306414-2dv3qced 150 14 that that WDT cord-306414-2dv3qced 150 15 are be VBP cord-306414-2dv3qced 150 16 displayed display VBN cord-306414-2dv3qced 150 17 by by IN cord-306414-2dv3qced 150 18 the the DT cord-306414-2dv3qced 150 19 MHC MHC NNP cord-306414-2dv3qced 150 20 molecule molecule NN cord-306414-2dv3qced 150 21 on on IN cord-306414-2dv3qced 150 22 the the DT cord-306414-2dv3qced 150 23 surface surface NN cord-306414-2dv3qced 150 24 of of IN cord-306414-2dv3qced 150 25 nucleated nucleated JJ cord-306414-2dv3qced 150 26 cells cell NNS cord-306414-2dv3qced 150 27 . . . cord-306414-2dv3qced 151 1 Each each DT cord-306414-2dv3qced 151 2 T t NN cord-306414-2dv3qced 151 3 cell cell NN cord-306414-2dv3qced 151 4 expresses express VBZ cord-306414-2dv3qced 151 5 a a DT cord-306414-2dv3qced 151 6 unique unique JJ cord-306414-2dv3qced 151 7 TCR TCR NNP cord-306414-2dv3qced 151 8 that that WDT cord-306414-2dv3qced 151 9 is be VBZ cord-306414-2dv3qced 151 10 generated generate VBN cord-306414-2dv3qced 151 11 by by IN cord-306414-2dv3qced 151 12 randomly randomly RB cord-306414-2dv3qced 151 13 recombined recombine VBN cord-306414-2dv3qced 151 14 genes gene NNS cord-306414-2dv3qced 151 15 . . . cord-306414-2dv3qced 152 1 This this DT cord-306414-2dv3qced 152 2 ensures ensure VBZ cord-306414-2dv3qced 152 3 that that IN cord-306414-2dv3qced 152 4 T t NN cord-306414-2dv3qced 152 5 cells cell NNS cord-306414-2dv3qced 152 6 can can MD cord-306414-2dv3qced 152 7 convergent convergent JJ cord-306414-2dv3qced 152 8 TCRβ tcrβ NN cord-306414-2dv3qced 152 9 repertoire repertoire NN cord-306414-2dv3qced 152 10 evolution evolution NN cord-306414-2dv3qced 152 11 in in IN cord-306414-2dv3qced 152 12 large large JJ cord-306414-2dv3qced 152 13 cohorts cohort NNS cord-306414-2dv3qced 152 14 of of IN cord-306414-2dv3qced 152 15 unrelated unrelated JJ cord-306414-2dv3qced 152 16 individuals individual NNS cord-306414-2dv3qced 152 17 infected infect VBN cord-306414-2dv3qced 152 18 with with IN cord-306414-2dv3qced 152 19 CMV CMV NNP cord-306414-2dv3qced 152 20 or or CC cord-306414-2dv3qced 152 21 vaccinated vaccinate VBN cord-306414-2dv3qced 152 22 against against IN cord-306414-2dv3qced 152 23 yellow yellow JJ cord-306414-2dv3qced 152 24 fever fever NN cord-306414-2dv3qced 152 25 [ [ -LRB- cord-306414-2dv3qced 152 26 57 57 CD cord-306414-2dv3qced 152 27 , , , cord-306414-2dv3qced 152 28 58 58 CD cord-306414-2dv3qced 152 29 ] ] -RRB- cord-306414-2dv3qced 152 30 . . . cord-306414-2dv3qced 153 1 Additional additional JJ cord-306414-2dv3qced 153 2 work work NN cord-306414-2dv3qced 153 3 has have VBZ cord-306414-2dv3qced 153 4 demonstrated demonstrate VBN cord-306414-2dv3qced 153 5 that that IN cord-306414-2dv3qced 153 6 information information NN cord-306414-2dv3qced 153 7 obtained obtain VBN cord-306414-2dv3qced 153 8 from from IN cord-306414-2dv3qced 153 9 public public JJ cord-306414-2dv3qced 153 10 TCRs tcr NNS cord-306414-2dv3qced 153 11 in in IN cord-306414-2dv3qced 153 12 smallpox smallpox NN cord-306414-2dv3qced 153 13 vaccinated vaccinate VBD cord-306414-2dv3qced 153 14 mice mouse NNS cord-306414-2dv3qced 153 15 can can MD cord-306414-2dv3qced 153 16 be be VB cord-306414-2dv3qced 153 17 used use VBN cord-306414-2dv3qced 153 18 to to TO cord-306414-2dv3qced 153 19 identify identify VB cord-306414-2dv3qced 153 20 smallpox smallpox NN cord-306414-2dv3qced 153 21 vaccinated vaccinate VBN cord-306414-2dv3qced 153 22 mice mouse NNS cord-306414-2dv3qced 153 23 with with IN cord-306414-2dv3qced 153 24 N99 N99 NNP cord-306414-2dv3qced 153 25 % % NN cord-306414-2dv3qced 153 26 accuracy accuracy NN cord-306414-2dv3qced 153 27 [ [ -LRB- cord-306414-2dv3qced 153 28 59 59 CD cord-306414-2dv3qced 153 29 ] ] -RRB- cord-306414-2dv3qced 153 30 . . . cord-306414-2dv3qced 154 1 Also also RB cord-306414-2dv3qced 154 2 , , , cord-306414-2dv3qced 154 3 it -PRON- PRP cord-306414-2dv3qced 154 4 has have VBZ cord-306414-2dv3qced 154 5 been be VBN cord-306414-2dv3qced 154 6 demonstrated demonstrate VBN cord-306414-2dv3qced 154 7 that that IN cord-306414-2dv3qced 154 8 influenza influenza NN cord-306414-2dv3qced 154 9 A a DT cord-306414-2dv3qced 154 10 infection infection NN cord-306414-2dv3qced 154 11 induces induce VBZ cord-306414-2dv3qced 154 12 a a DT cord-306414-2dv3qced 154 13 polyclonal polyclonal JJ cord-306414-2dv3qced 154 14 T t NN cord-306414-2dv3qced 154 15 cell cell NN cord-306414-2dv3qced 154 16 response response NN cord-306414-2dv3qced 154 17 in in IN cord-306414-2dv3qced 154 18 patients patient NNS cord-306414-2dv3qced 154 19 , , , cord-306414-2dv3qced 154 20 by by IN cord-306414-2dv3qced 154 21 TCRs TCRs NNP cord-306414-2dv3qced 154 22 predominantly predominantly RB cord-306414-2dv3qced 154 23 utilizing utilize VBG cord-306414-2dv3qced 154 24 TRBV19 TRBV19 NNP cord-306414-2dv3qced 154 25 gene gene NN cord-306414-2dv3qced 154 26 [ [ -LRB- cord-306414-2dv3qced 154 27 60 60 CD cord-306414-2dv3qced 154 28 ] ] -RRB- cord-306414-2dv3qced 154 29 . . . cord-306414-2dv3qced 155 1 Collectively collectively RB cord-306414-2dv3qced 155 2 , , , cord-306414-2dv3qced 155 3 these these DT cord-306414-2dv3qced 155 4 studies study NNS cord-306414-2dv3qced 155 5 suggest suggest VBP cord-306414-2dv3qced 155 6 that that IN cord-306414-2dv3qced 155 7 the the DT cord-306414-2dv3qced 155 8 TCR TCR NNP cord-306414-2dv3qced 155 9 repertoire repertoire NN cord-306414-2dv3qced 155 10 changes change NNS cord-306414-2dv3qced 155 11 in in IN cord-306414-2dv3qced 155 12 response response NN cord-306414-2dv3qced 155 13 to to IN cord-306414-2dv3qced 155 14 infection infection NN cord-306414-2dv3qced 155 15 or or CC cord-306414-2dv3qced 155 16 vaccination vaccination NN cord-306414-2dv3qced 155 17 in in IN cord-306414-2dv3qced 155 18 a a DT cord-306414-2dv3qced 155 19 potentially potentially RB cord-306414-2dv3qced 155 20 predictable predictable JJ cord-306414-2dv3qced 155 21 manner manner NN cord-306414-2dv3qced 155 22 and and CC cord-306414-2dv3qced 155 23 can can MD cord-306414-2dv3qced 155 24 therefore therefore RB cord-306414-2dv3qced 155 25 be be VB cord-306414-2dv3qced 155 26 leveraged leverage VBN cord-306414-2dv3qced 155 27 to to TO cord-306414-2dv3qced 155 28 identify identify VB cord-306414-2dv3qced 155 29 clones clone NNS cord-306414-2dv3qced 155 30 against against IN cord-306414-2dv3qced 155 31 SARS SARS NNP cord-306414-2dv3qced 155 32 - - HYPH cord-306414-2dv3qced 155 33 CoV-2 CoV-2 NNP cord-306414-2dv3qced 155 34 . . . cord-306414-2dv3qced 156 1 Thus thus RB cord-306414-2dv3qced 156 2 , , , cord-306414-2dv3qced 156 3 TCR TCR NNP cord-306414-2dv3qced 156 4 repertoire repertoire NN cord-306414-2dv3qced 156 5 profiling profiling NN cord-306414-2dv3qced 156 6 in in IN cord-306414-2dv3qced 156 7 COVID-19 covid-19 JJ cord-306414-2dv3qced 156 8 patients patient NNS cord-306414-2dv3qced 156 9 after after IN cord-306414-2dv3qced 156 10 recovery recovery NN cord-306414-2dv3qced 156 11 may may MD cord-306414-2dv3qced 156 12 uncover uncover VB cord-306414-2dv3qced 156 13 SARS SARS NNP cord-306414-2dv3qced 156 14 - - HYPH cord-306414-2dv3qced 156 15 CoV-2 CoV-2 NNP cord-306414-2dv3qced 156 16 reactive reactive JJ cord-306414-2dv3qced 156 17 clones clone NNS cord-306414-2dv3qced 156 18 and/or and/or CC cord-306414-2dv3qced 156 19 general general JJ cord-306414-2dv3qced 156 20 TCR TCR NNP cord-306414-2dv3qced 156 21 repertoire repertoire NN cord-306414-2dv3qced 157 1 features feature NNS cord-306414-2dv3qced 157 2 that that WDT cord-306414-2dv3qced 157 3 differentiate differentiate VBP cord-306414-2dv3qced 157 4 patients patient NNS cord-306414-2dv3qced 157 5 with with IN cord-306414-2dv3qced 157 6 prior prior JJ cord-306414-2dv3qced 157 7 infection infection NN cord-306414-2dv3qced 157 8 from from IN cord-306414-2dv3qced 157 9 those those DT cord-306414-2dv3qced 157 10 that that WDT cord-306414-2dv3qced 157 11 have have VBP cord-306414-2dv3qced 157 12 never never RB cord-306414-2dv3qced 157 13 been be VBN cord-306414-2dv3qced 157 14 infected infect VBN cord-306414-2dv3qced 158 1 ( ( -LRB- cord-306414-2dv3qced 158 2 Figure figure NN cord-306414-2dv3qced 158 3 3A 3a CD cord-306414-2dv3qced 158 4 ) ) -RRB- cord-306414-2dv3qced 158 5 . . . cord-306414-2dv3qced 159 1 TCR TCR NNP cord-306414-2dv3qced 159 2 repertoire repertoire NN cord-306414-2dv3qced 159 3 profiling profiling NN cord-306414-2dv3qced 159 4 combined combine VBN cord-306414-2dv3qced 159 5 with with IN cord-306414-2dv3qced 159 6 computational computational JJ cord-306414-2dv3qced 159 7 strategies strategy NNS cord-306414-2dv3qced 159 8 may may MD cord-306414-2dv3qced 159 9 also also RB cord-306414-2dv3qced 159 10 enable enable VB cord-306414-2dv3qced 159 11 the the DT cord-306414-2dv3qced 159 12 identification identification NN cord-306414-2dv3qced 159 13 of of IN cord-306414-2dv3qced 159 14 SARS SARS NNP cord-306414-2dv3qced 159 15 - - HYPH cord-306414-2dv3qced 159 16 CoV-2-specific CoV-2-specific NNP cord-306414-2dv3qced 159 17 TCR TCR NNP cord-306414-2dv3qced 159 18 clones clone NNS cord-306414-2dv3qced 159 19 and and CC cord-306414-2dv3qced 159 20 general general JJ cord-306414-2dv3qced 159 21 TCR TCR NNP cord-306414-2dv3qced 159 22 repertoire repertoire NN cord-306414-2dv3qced 159 23 signatures signature NNS cord-306414-2dv3qced 159 24 that that WDT cord-306414-2dv3qced 159 25 may may MD cord-306414-2dv3qced 159 26 serve serve VB cord-306414-2dv3qced 159 27 as as IN cord-306414-2dv3qced 159 28 a a DT cord-306414-2dv3qced 159 29 biomarker biomarker NN cord-306414-2dv3qced 159 30 for for IN cord-306414-2dv3qced 159 31 herd herd NN cord-306414-2dv3qced 159 32 immunity immunity NN cord-306414-2dv3qced 159 33 at at IN cord-306414-2dv3qced 159 34 the the DT cord-306414-2dv3qced 159 35 population population NN cord-306414-2dv3qced 159 36 level level NN cord-306414-2dv3qced 159 37 ( ( -LRB- cord-306414-2dv3qced 159 38 Figure figure NN cord-306414-2dv3qced 159 39 3B 3b CD cord-306414-2dv3qced 159 40 ) ) -RRB- cord-306414-2dv3qced 159 41 . . . cord-306414-2dv3qced 160 1 Adoptive adoptive JJ cord-306414-2dv3qced 160 2 transfer transfer NN cord-306414-2dv3qced 160 3 of of IN cord-306414-2dv3qced 160 4 TCR TCR NNP cord-306414-2dv3qced 160 5 engineered engineer VBD cord-306414-2dv3qced 160 6 T t NN cord-306414-2dv3qced 160 7 cell cell NN cord-306414-2dv3qced 160 8 ( ( -LRB- cord-306414-2dv3qced 160 9 TCR TCR NNP cord-306414-2dv3qced 160 10 - - HYPH cord-306414-2dv3qced 160 11 T T NNP cord-306414-2dv3qced 160 12 ) ) -RRB- cord-306414-2dv3qced 160 13 has have VBZ cord-306414-2dv3qced 160 14 been be VBN cord-306414-2dv3qced 160 15 applied apply VBN cord-306414-2dv3qced 160 16 to to TO cord-306414-2dv3qced 160 17 treat treat VB cord-306414-2dv3qced 160 18 viral viral JJ cord-306414-2dv3qced 160 19 infections infection NNS cord-306414-2dv3qced 160 20 such such JJ cord-306414-2dv3qced 160 21 as as IN cord-306414-2dv3qced 160 22 hepatitis hepatitis NN cord-306414-2dv3qced 160 23 B B NNP cord-306414-2dv3qced 160 24 and and CC cord-306414-2dv3qced 160 25 C C NNP cord-306414-2dv3qced 160 26 [ [ -LRB- cord-306414-2dv3qced 160 27 61 61 CD cord-306414-2dv3qced 160 28 , , , cord-306414-2dv3qced 160 29 62 62 CD cord-306414-2dv3qced 160 30 ] ] -RRB- cord-306414-2dv3qced 160 31 . . . cord-306414-2dv3qced 161 1 This this DT cord-306414-2dv3qced 161 2 was be VBD cord-306414-2dv3qced 161 3 also also RB cord-306414-2dv3qced 161 4 demonstrated demonstrate VBN cord-306414-2dv3qced 161 5 in in IN cord-306414-2dv3qced 161 6 preclinical preclinical JJ cord-306414-2dv3qced 161 7 models model NNS cord-306414-2dv3qced 161 8 for for IN cord-306414-2dv3qced 161 9 prior prior JJ cord-306414-2dv3qced 161 10 coronaviruses coronaviruse NNS cord-306414-2dv3qced 161 11 such such JJ cord-306414-2dv3qced 161 12 as as IN cord-306414-2dv3qced 161 13 SARS SARS NNP cord-306414-2dv3qced 161 14 ; ; , cord-306414-2dv3qced 161 15 engineered engineer VBN cord-306414-2dv3qced 161 16 SARS SARS NNP cord-306414-2dv3qced 161 17 - - HYPH cord-306414-2dv3qced 161 18 CoV cov NN cord-306414-2dv3qced 161 19 - - HYPH cord-306414-2dv3qced 161 20 specific specific JJ cord-306414-2dv3qced 161 21 TCR TCR NNP cord-306414-2dv3qced 161 22 - - HYPH cord-306414-2dv3qced 161 23 T T NNP cord-306414-2dv3qced 161 24 cells cell NNS cord-306414-2dv3qced 161 25 from from IN cord-306414-2dv3qced 161 26 normal normal JJ cord-306414-2dv3qced 161 27 individuals individual NNS cord-306414-2dv3qced 161 28 have have VBP cord-306414-2dv3qced 161 29 demonstrated demonstrate VBN cord-306414-2dv3qced 161 30 antiviral antiviral JJ cord-306414-2dv3qced 161 31 activity activity NN cord-306414-2dv3qced 161 32 that that WDT cord-306414-2dv3qced 161 33 was be VBD cord-306414-2dv3qced 161 34 comparable comparable JJ cord-306414-2dv3qced 161 35 with with IN cord-306414-2dv3qced 161 36 that that DT cord-306414-2dv3qced 161 37 of of IN cord-306414-2dv3qced 161 38 natural natural JJ cord-306414-2dv3qced 161 39 SARS SARS NNP cord-306414-2dv3qced 161 40 - - HYPH cord-306414-2dv3qced 161 41 CoVspecific CoVspecific NNP cord-306414-2dv3qced 161 42 memory memory NN cord-306414-2dv3qced 161 43 CD8 CD8 NNP cord-306414-2dv3qced 161 44 + + CC cord-306414-2dv3qced 161 45 T T NNP cord-306414-2dv3qced 161 46 cells cell NNS cord-306414-2dv3qced 161 47 [ [ -LRB- cord-306414-2dv3qced 161 48 63 63 CD cord-306414-2dv3qced 161 49 ] ] -RRB- cord-306414-2dv3qced 161 50 . . . cord-306414-2dv3qced 162 1 The the DT cord-306414-2dv3qced 162 2 ability ability NN cord-306414-2dv3qced 162 3 to to TO cord-306414-2dv3qced 162 4 identify identify VB cord-306414-2dv3qced 162 5 potential potential JJ cord-306414-2dv3qced 162 6 TCR TCR NNP cord-306414-2dv3qced 162 7 clones clone NNS cord-306414-2dv3qced 162 8 that that WDT cord-306414-2dv3qced 162 9 are be VBP cord-306414-2dv3qced 162 10 specific specific JJ cord-306414-2dv3qced 162 11 to to IN cord-306414-2dv3qced 162 12 SARS SARS NNP cord-306414-2dv3qced 162 13 - - HYPH cord-306414-2dv3qced 162 14 CoV-2 CoV-2 NNP cord-306414-2dv3qced 162 15 antigens antigen NNS cord-306414-2dv3qced 162 16 can can MD cord-306414-2dv3qced 162 17 be be VB cord-306414-2dv3qced 162 18 leveraged leverage VBN cord-306414-2dv3qced 162 19 in in IN cord-306414-2dv3qced 162 20 the the DT cord-306414-2dv3qced 162 21 development development NN cord-306414-2dv3qced 162 22 of of IN cord-306414-2dv3qced 162 23 highly highly RB cord-306414-2dv3qced 162 24 specific specific JJ cord-306414-2dv3qced 162 25 and and CC cord-306414-2dv3qced 162 26 advanced advanced JJ cord-306414-2dv3qced 162 27 forms form NNS cord-306414-2dv3qced 162 28 of of IN cord-306414-2dv3qced 162 29 immunotherapy immunotherapy NN cord-306414-2dv3qced 162 30 based base VBN cord-306414-2dv3qced 162 31 on on IN cord-306414-2dv3qced 162 32 TCR TCR NNP cord-306414-2dv3qced 162 33 structural structural JJ cord-306414-2dv3qced 162 34 and and CC cord-306414-2dv3qced 162 35 sequence sequence NN cord-306414-2dv3qced 162 36 information information NN cord-306414-2dv3qced 162 37 . . . cord-306414-2dv3qced 163 1 Identification identification NN cord-306414-2dv3qced 163 2 of of IN cord-306414-2dv3qced 163 3 public public JJ cord-306414-2dv3qced 163 4 clones clone NNS cord-306414-2dv3qced 163 5 through through IN cord-306414-2dv3qced 163 6 TCR TCR NNP cord-306414-2dv3qced 163 7 repertoire repertoire NN cord-306414-2dv3qced 163 8 profiling profiling NN cord-306414-2dv3qced 163 9 in in IN cord-306414-2dv3qced 163 10 infected infected JJ cord-306414-2dv3qced 163 11 and and CC cord-306414-2dv3qced 163 12 vaccinated vaccinate VBN cord-306414-2dv3qced 163 13 individuals individual NNS cord-306414-2dv3qced 163 14 may may MD cord-306414-2dv3qced 163 15 guide guide VB cord-306414-2dv3qced 163 16 the the DT cord-306414-2dv3qced 163 17 design design NN cord-306414-2dv3qced 163 18 of of IN cord-306414-2dv3qced 163 19 future future JJ cord-306414-2dv3qced 163 20 TCR TCR NNP cord-306414-2dv3qced 163 21 - - HYPH cord-306414-2dv3qced 163 22 T T NNP cord-306414-2dv3qced 163 23 immunotherapies immunotherapy NNS cord-306414-2dv3qced 163 24 against against IN cord-306414-2dv3qced 163 25 SARS SARS NNP cord-306414-2dv3qced 163 26 - - HYPH cord-306414-2dv3qced 163 27 CoV-2 CoV-2 NNP cord-306414-2dv3qced 163 28 . . . cord-306414-2dv3qced 164 1 SARS SARS NNP cord-306414-2dv3qced 164 2 - - HYPH cord-306414-2dv3qced 164 3 CoV-2 CoV-2 NNP cord-306414-2dv3qced 164 4 reactive reactive JJ cord-306414-2dv3qced 164 5 T t NN cord-306414-2dv3qced 164 6 cells cell NNS cord-306414-2dv3qced 164 7 can can MD cord-306414-2dv3qced 164 8 be be VB cord-306414-2dv3qced 164 9 expanded expand VBN cord-306414-2dv3qced 164 10 ex ex FW cord-306414-2dv3qced 164 11 vivo vivo NN cord-306414-2dv3qced 164 12 and and CC cord-306414-2dv3qced 164 13 infused infuse VBN cord-306414-2dv3qced 164 14 directly directly RB cord-306414-2dv3qced 164 15 into into IN cord-306414-2dv3qced 164 16 an an DT cord-306414-2dv3qced 164 17 individual individual NN cord-306414-2dv3qced 164 18 to to TO cord-306414-2dv3qced 164 19 shorten shorten VB cord-306414-2dv3qced 164 20 recovery recovery NN cord-306414-2dv3qced 164 21 time time NN cord-306414-2dv3qced 164 22 and and CC cord-306414-2dv3qced 164 23 increase increase VB cord-306414-2dv3qced 164 24 the the DT cord-306414-2dv3qced 164 25 magnitude magnitude NN cord-306414-2dv3qced 164 26 of of IN cord-306414-2dv3qced 164 27 response response NN cord-306414-2dv3qced 165 1 ( ( -LRB- cord-306414-2dv3qced 165 2 Figure figure NN cord-306414-2dv3qced 165 3 4 4 CD cord-306414-2dv3qced 165 4 ) ) -RRB- cord-306414-2dv3qced 165 5 . . . cord-306414-2dv3qced 166 1 TCR TCR NNP cord-306414-2dv3qced 166 2 Repertoire repertoire NN cord-306414-2dv3qced 166 3 Changes change VBZ cord-306414-2dv3qced 166 4 as as IN cord-306414-2dv3qced 166 5 a a DT cord-306414-2dv3qced 166 6 Measure measure NN cord-306414-2dv3qced 166 7 of of IN cord-306414-2dv3qced 166 8 Clinical clinical JJ cord-306414-2dv3qced 166 9 Outcome outcome NN cord-306414-2dv3qced 166 10 TCR TCR NNP cord-306414-2dv3qced 167 1 repertoire repertoire NN cord-306414-2dv3qced 167 2 composition composition NN cord-306414-2dv3qced 167 3 and and CC cord-306414-2dv3qced 167 4 diversity diversity NN cord-306414-2dv3qced 167 5 are be VBP cord-306414-2dv3qced 167 6 major major JJ cord-306414-2dv3qced 167 7 determinants determinant NNS cord-306414-2dv3qced 167 8 of of IN cord-306414-2dv3qced 167 9 disease disease NN cord-306414-2dv3qced 167 10 outcomes outcome NNS cord-306414-2dv3qced 167 11 following follow VBG cord-306414-2dv3qced 167 12 viral viral JJ cord-306414-2dv3qced 167 13 infection infection NN cord-306414-2dv3qced 167 14 . . . cord-306414-2dv3qced 168 1 Multiple multiple JJ cord-306414-2dv3qced 168 2 studies study NNS cord-306414-2dv3qced 168 3 have have VBP cord-306414-2dv3qced 168 4 provided provide VBN cord-306414-2dv3qced 168 5 clear clear JJ cord-306414-2dv3qced 168 6 evidence evidence NN cord-306414-2dv3qced 168 7 indicating indicate VBG cord-306414-2dv3qced 168 8 a a DT cord-306414-2dv3qced 168 9 highly highly RB cord-306414-2dv3qced 168 10 diverse diverse JJ cord-306414-2dv3qced 168 11 TCR TCR NNP cord-306414-2dv3qced 168 12 repertoire repertoire NN cord-306414-2dv3qced 168 13 provides provide VBZ cord-306414-2dv3qced 168 14 protection protection NN cord-306414-2dv3qced 168 15 against against IN cord-306414-2dv3qced 168 16 a a DT cord-306414-2dv3qced 168 17 wide wide JJ cord-306414-2dv3qced 168 18 array array NN cord-306414-2dv3qced 168 19 of of IN cord-306414-2dv3qced 168 20 antigens antigen NNS cord-306414-2dv3qced 168 21 [ [ -LRB- cord-306414-2dv3qced 168 22 22 22 CD cord-306414-2dv3qced 168 23 , , , cord-306414-2dv3qced 168 24 64 64 CD cord-306414-2dv3qced 168 25 , , , cord-306414-2dv3qced 168 26 65 65 CD cord-306414-2dv3qced 168 27 ] ] -RRB- cord-306414-2dv3qced 168 28 . . . cord-306414-2dv3qced 169 1 It -PRON- PRP cord-306414-2dv3qced 169 2 is be VBZ cord-306414-2dv3qced 169 3 possible possible JJ cord-306414-2dv3qced 169 4 that that IN cord-306414-2dv3qced 169 5 a a DT cord-306414-2dv3qced 169 6 highly highly RB cord-306414-2dv3qced 169 7 diverse diverse JJ cord-306414-2dv3qced 169 8 TCR TCR NNP cord-306414-2dv3qced 169 9 repertoire repertoire NN cord-306414-2dv3qced 169 10 can can MD cord-306414-2dv3qced 169 11 allow allow VB cord-306414-2dv3qced 169 12 for for IN cord-306414-2dv3qced 169 13 the the DT cord-306414-2dv3qced 169 14 right right JJ cord-306414-2dv3qced 169 15 amount amount NN cord-306414-2dv3qced 169 16 of of IN cord-306414-2dv3qced 169 17 avidity avidity NN cord-306414-2dv3qced 169 18 , , , cord-306414-2dv3qced 169 19 affinity affinity NN cord-306414-2dv3qced 169 20 , , , cord-306414-2dv3qced 169 21 and and CC cord-306414-2dv3qced 169 22 overall overall JJ cord-306414-2dv3qced 169 23 function function NN cord-306414-2dv3qced 169 24 [ [ -LRB- cord-306414-2dv3qced 169 25 66 66 CD cord-306414-2dv3qced 169 26 , , , cord-306414-2dv3qced 169 27 67 67 CD cord-306414-2dv3qced 169 28 ] ] -RRB- cord-306414-2dv3qced 169 29 . . . cord-306414-2dv3qced 170 1 Similar similar JJ cord-306414-2dv3qced 170 2 studies study NNS cord-306414-2dv3qced 170 3 can can MD cord-306414-2dv3qced 170 4 be be VB cord-306414-2dv3qced 170 5 performed perform VBN cord-306414-2dv3qced 170 6 to to TO cord-306414-2dv3qced 170 7 track track VB cord-306414-2dv3qced 170 8 changes change NNS cord-306414-2dv3qced 170 9 in in IN cord-306414-2dv3qced 170 10 the the DT cord-306414-2dv3qced 170 11 TCR TCR NNP cord-306414-2dv3qced 170 12 repertoire repertoire NN cord-306414-2dv3qced 170 13 in in IN cord-306414-2dv3qced 170 14 SARS SARS NNP cord-306414-2dv3qced 170 15 - - HYPH cord-306414-2dv3qced 170 16 CoV-2 CoV-2 NNP cord-306414-2dv3qced 170 17 positive positive JJ cord-306414-2dv3qced 170 18 individuals individual NNS cord-306414-2dv3qced 170 19 , , , cord-306414-2dv3qced 170 20 beginning begin VBG cord-306414-2dv3qced 170 21 at at IN cord-306414-2dv3qced 170 22 hospitalization hospitalization NN cord-306414-2dv3qced 170 23 , , , cord-306414-2dv3qced 170 24 to to TO cord-306414-2dv3qced 170 25 precisely precisely RB cord-306414-2dv3qced 170 26 identify identify VB cord-306414-2dv3qced 170 27 changes change NNS cord-306414-2dv3qced 170 28 in in IN cord-306414-2dv3qced 170 29 the the DT cord-306414-2dv3qced 170 30 TCR TCR NNP cord-306414-2dv3qced 170 31 repertoire repertoire NN cord-306414-2dv3qced 170 32 and and CC cord-306414-2dv3qced 170 33 composition composition NN cord-306414-2dv3qced 170 34 throughout throughout IN cord-306414-2dv3qced 170 35 disease disease NN cord-306414-2dv3qced 170 36 progression progression NN cord-306414-2dv3qced 170 37 . . . cord-306414-2dv3qced 171 1 By by IN cord-306414-2dv3qced 171 2 examining examine VBG cord-306414-2dv3qced 171 3 the the DT cord-306414-2dv3qced 171 4 TCR TCR NNP cord-306414-2dv3qced 171 5 repertoire repertoire NN cord-306414-2dv3qced 171 6 composition composition NN cord-306414-2dv3qced 171 7 and and CC cord-306414-2dv3qced 171 8 diversity diversity NN cord-306414-2dv3qced 171 9 in in IN cord-306414-2dv3qced 171 10 a a DT cord-306414-2dv3qced 171 11 large large JJ cord-306414-2dv3qced 171 12 patient patient JJ cord-306414-2dv3qced 171 13 population population NN cord-306414-2dv3qced 171 14 , , , cord-306414-2dv3qced 171 15 beginning begin VBG cord-306414-2dv3qced 171 16 at at IN cord-306414-2dv3qced 171 17 early early JJ cord-306414-2dv3qced 171 18 stages stage NNS cord-306414-2dv3qced 171 19 of of IN cord-306414-2dv3qced 171 20 infection infection NN cord-306414-2dv3qced 171 21 , , , cord-306414-2dv3qced 171 22 we -PRON- PRP cord-306414-2dv3qced 171 23 may may MD cord-306414-2dv3qced 171 24 be be VB cord-306414-2dv3qced 171 25 able able JJ cord-306414-2dv3qced 171 26 to to TO cord-306414-2dv3qced 171 27 understand understand VB cord-306414-2dv3qced 171 28 how how WRB cord-306414-2dv3qced 171 29 these these DT cord-306414-2dv3qced 171 30 two two CD cord-306414-2dv3qced 171 31 parameters parameter NNS cord-306414-2dv3qced 171 32 change change VBP cord-306414-2dv3qced 171 33 in in IN cord-306414-2dv3qced 171 34 association association NN cord-306414-2dv3qced 171 35 with with IN cord-306414-2dv3qced 171 36 immune immune JJ cord-306414-2dv3qced 171 37 response response NN cord-306414-2dv3qced 171 38 and and CC cord-306414-2dv3qced 171 39 outcomes outcome NNS cord-306414-2dv3qced 171 40 in in IN cord-306414-2dv3qced 171 41 COVID-19 covid-19 CD cord-306414-2dv3qced 171 42 patients patient NNS cord-306414-2dv3qced 171 43 . . . cord-306414-2dv3qced 172 1 Biological biological JJ cord-306414-2dv3qced 172 2 Samples sample NNS cord-306414-2dv3qced 173 1 The the DT cord-306414-2dv3qced 173 2 selection selection NN cord-306414-2dv3qced 173 3 of of IN cord-306414-2dv3qced 173 4 proper proper JJ cord-306414-2dv3qced 173 5 biological biological JJ cord-306414-2dv3qced 173 6 samples sample NNS cord-306414-2dv3qced 173 7 and and CC cord-306414-2dv3qced 173 8 determining determine VBG cord-306414-2dv3qced 173 9 an an DT cord-306414-2dv3qced 173 10 appropriate appropriate JJ cord-306414-2dv3qced 173 11 collection collection NN cord-306414-2dv3qced 173 12 schedule schedule NN cord-306414-2dv3qced 173 13 is be VBZ cord-306414-2dv3qced 173 14 crucial crucial JJ cord-306414-2dv3qced 173 15 to to TO cord-306414-2dv3qced 173 16 prepare prepare VB cord-306414-2dv3qced 173 17 the the DT cord-306414-2dv3qced 173 18 input input NN cord-306414-2dv3qced 173 19 for for IN cord-306414-2dv3qced 173 20 TCR TCR NNP cord-306414-2dv3qced 173 21 analysis analysis NN cord-306414-2dv3qced 173 22 . . . cord-306414-2dv3qced 174 1 Sputum sputum NN cord-306414-2dv3qced 174 2 samples sample NNS cord-306414-2dv3qced 174 3 , , , cord-306414-2dv3qced 174 4 while while IN cord-306414-2dv3qced 174 5 feasible feasible JJ cord-306414-2dv3qced 174 6 , , , cord-306414-2dv3qced 174 7 may may MD cord-306414-2dv3qced 174 8 not not RB cord-306414-2dv3qced 174 9 offer offer VB cord-306414-2dv3qced 174 10 sufficient sufficient JJ cord-306414-2dv3qced 174 11 depth depth NN cord-306414-2dv3qced 174 12 of of IN cord-306414-2dv3qced 174 13 the the DT cord-306414-2dv3qced 174 14 TCR TCR NNP cord-306414-2dv3qced 174 15 repertoire repertoire NN cord-306414-2dv3qced 174 16 sequencing sequencing NN cord-306414-2dv3qced 174 17 , , , cord-306414-2dv3qced 174 18 as as IN cord-306414-2dv3qced 174 19 the the DT cord-306414-2dv3qced 174 20 number number NN cord-306414-2dv3qced 174 21 of of IN cord-306414-2dv3qced 174 22 CD8 CD8 NNP cord-306414-2dv3qced 174 23 + + CC cord-306414-2dv3qced 174 24 T T NNP cord-306414-2dv3qced 174 25 cells cell NNS cord-306414-2dv3qced 174 26 in in IN cord-306414-2dv3qced 174 27 sputum sputum NN cord-306414-2dv3qced 174 28 , , , cord-306414-2dv3qced 174 29 relative relative JJ cord-306414-2dv3qced 174 30 to to IN cord-306414-2dv3qced 174 31 other other JJ cord-306414-2dv3qced 174 32 biological biological JJ cord-306414-2dv3qced 174 33 materials material NNS cord-306414-2dv3qced 174 34 , , , cord-306414-2dv3qced 174 35 is be VBZ cord-306414-2dv3qced 174 36 low low JJ cord-306414-2dv3qced 174 37 [ [ -LRB- cord-306414-2dv3qced 174 38 68 68 CD cord-306414-2dv3qced 174 39 ] ] -RRB- cord-306414-2dv3qced 174 40 . . . cord-306414-2dv3qced 175 1 Bronchoalveolar Bronchoalveolar NNP cord-306414-2dv3qced 175 2 lavage lavage NN cord-306414-2dv3qced 175 3 and and CC cord-306414-2dv3qced 175 4 lung lung NN cord-306414-2dv3qced 175 5 tissue tissue NN cord-306414-2dv3qced 175 6 samples sample NNS cord-306414-2dv3qced 175 7 may may MD cord-306414-2dv3qced 175 8 be be VB cord-306414-2dv3qced 175 9 an an DT cord-306414-2dv3qced 175 10 attractive attractive JJ cord-306414-2dv3qced 175 11 and and CC cord-306414-2dv3qced 175 12 informative informative JJ cord-306414-2dv3qced 175 13 choice choice NN cord-306414-2dv3qced 175 14 but but CC cord-306414-2dv3qced 175 15 acquiring acquire VBG cord-306414-2dv3qced 175 16 such such JJ cord-306414-2dv3qced 175 17 samples sample NNS cord-306414-2dv3qced 175 18 is be VBZ cord-306414-2dv3qced 175 19 difficult difficult JJ cord-306414-2dv3qced 175 20 for for IN cord-306414-2dv3qced 175 21 a a DT cord-306414-2dv3qced 175 22 variety variety NN cord-306414-2dv3qced 175 23 of of IN cord-306414-2dv3qced 175 24 reasons reason NNS cord-306414-2dv3qced 175 25 , , , cord-306414-2dv3qced 175 26 particularly particularly RB cord-306414-2dv3qced 175 27 patient patient JJ cord-306414-2dv3qced 175 28 willingness willingness NN cord-306414-2dv3qced 175 29 and and CC cord-306414-2dv3qced 175 30 worker worker NN cord-306414-2dv3qced 175 31 safety safety NN cord-306414-2dv3qced 175 32 [ [ -LRB- cord-306414-2dv3qced 175 33 69 69 CD cord-306414-2dv3qced 175 34 ] ] -RRB- cord-306414-2dv3qced 175 35 . . . cord-306414-2dv3qced 176 1 In in IN cord-306414-2dv3qced 176 2 addition addition NN cord-306414-2dv3qced 176 3 , , , cord-306414-2dv3qced 176 4 these these DT cord-306414-2dv3qced 176 5 procedures procedure NNS cord-306414-2dv3qced 176 6 are be VBP cord-306414-2dv3qced 176 7 invasive invasive JJ cord-306414-2dv3qced 176 8 to to TO cord-306414-2dv3qced 176 9 perform perform VB cord-306414-2dv3qced 176 10 on on IN cord-306414-2dv3qced 176 11 mild mild JJ cord-306414-2dv3qced 176 12 cases case NNS cord-306414-2dv3qced 176 13 and and CC cord-306414-2dv3qced 176 14 otherwise otherwise RB cord-306414-2dv3qced 176 15 healthy healthy JJ cord-306414-2dv3qced 176 16 individuals individual NNS cord-306414-2dv3qced 176 17 for for IN cord-306414-2dv3qced 176 18 research research NN cord-306414-2dv3qced 176 19 purposes purpose NNS cord-306414-2dv3qced 176 20 . . . cord-306414-2dv3qced 177 1 Peripheral peripheral JJ cord-306414-2dv3qced 177 2 blood blood NN cord-306414-2dv3qced 177 3 samples sample NNS cord-306414-2dv3qced 177 4 are be VBP cord-306414-2dv3qced 177 5 easy easy JJ cord-306414-2dv3qced 177 6 to to TO cord-306414-2dv3qced 177 7 collect collect VB cord-306414-2dv3qced 177 8 and and CC cord-306414-2dv3qced 177 9 are be VBP cord-306414-2dv3qced 177 10 the the DT cord-306414-2dv3qced 177 11 most most RBS cord-306414-2dv3qced 177 12 feasible feasible JJ cord-306414-2dv3qced 177 13 , , , cord-306414-2dv3qced 177 14 particularly particularly RB cord-306414-2dv3qced 177 15 to to TO cord-306414-2dv3qced 177 16 examine examine VB cord-306414-2dv3qced 177 17 the the DT cord-306414-2dv3qced 177 18 dynamics dynamic NNS cord-306414-2dv3qced 177 19 of of IN cord-306414-2dv3qced 177 20 the the DT cord-306414-2dv3qced 177 21 TCR TCR NNP cord-306414-2dv3qced 177 22 repertoire repertoire NN cord-306414-2dv3qced 177 23 , , , cord-306414-2dv3qced 177 24 as as IN cord-306414-2dv3qced 177 25 multiple multiple JJ cord-306414-2dv3qced 177 26 collections collection NNS cord-306414-2dv3qced 177 27 could could MD cord-306414-2dv3qced 177 28 be be VB cord-306414-2dv3qced 177 29 performed perform VBN cord-306414-2dv3qced 177 30 , , , cord-306414-2dv3qced 177 31 starting start VBG cord-306414-2dv3qced 177 32 from from IN cord-306414-2dv3qced 177 33 diagnosis diagnosis NN cord-306414-2dv3qced 177 34 and and CC cord-306414-2dv3qced 177 35 respond respond VB cord-306414-2dv3qced 177 36 ( ( -LRB- cord-306414-2dv3qced 177 37 at at IN cord-306414-2dv3qced 177 38 the the DT cord-306414-2dv3qced 177 39 population population NN cord-306414-2dv3qced 177 40 level level NN cord-306414-2dv3qced 177 41 ) ) -RRB- cord-306414-2dv3qced 177 42 to to IN cord-306414-2dv3qced 177 43 almost almost RB cord-306414-2dv3qced 177 44 any any DT cord-306414-2dv3qced 177 45 infection infection NN cord-306414-2dv3qced 177 46 . . . cord-306414-2dv3qced 178 1 TCR TCR NNP cord-306414-2dv3qced 178 2 bias bias NNP cord-306414-2dv3qced 178 3 : : : cord-306414-2dv3qced 178 4 refers refer VBZ cord-306414-2dv3qced 178 5 to to IN cord-306414-2dv3qced 178 6 the the DT cord-306414-2dv3qced 178 7 overrepresentation overrepresentation NN cord-306414-2dv3qced 178 8 of of IN cord-306414-2dv3qced 178 9 TCR TCR NNP cord-306414-2dv3qced 178 10 genes gene NNS cord-306414-2dv3qced 178 11 or or CC cord-306414-2dv3qced 178 12 clones clone NNS cord-306414-2dv3qced 178 13 in in IN cord-306414-2dv3qced 178 14 the the DT cord-306414-2dv3qced 178 15 TCR TCR NNP cord-306414-2dv3qced 178 16 repertoire repertoire NN cord-306414-2dv3qced 178 17 . . . cord-306414-2dv3qced 179 1 The the DT cord-306414-2dv3qced 179 2 bias bias NN cord-306414-2dv3qced 179 3 in in IN cord-306414-2dv3qced 179 4 TCR TCR NNP cord-306414-2dv3qced 179 5 usage usage NN cord-306414-2dv3qced 179 6 can can MD cord-306414-2dv3qced 179 7 be be VB cord-306414-2dv3qced 179 8 categorized categorize VBN cord-306414-2dv3qced 179 9 based base VBN cord-306414-2dv3qced 179 10 on on IN cord-306414-2dv3qced 179 11 the the DT cord-306414-2dv3qced 179 12 diversity diversity NN cord-306414-2dv3qced 179 13 in in IN cord-306414-2dv3qced 179 14 a a DT cord-306414-2dv3qced 179 15 specific specific JJ cord-306414-2dv3qced 179 16 T t NN cord-306414-2dv3qced 179 17 cell cell NN cord-306414-2dv3qced 179 18 population population NN cord-306414-2dv3qced 179 19 . . . cord-306414-2dv3qced 180 1 TCR TCR NNP cord-306414-2dv3qced 180 2 bias bias NN cord-306414-2dv3qced 180 3 can can MD cord-306414-2dv3qced 180 4 be be VB cord-306414-2dv3qced 180 5 influenced influence VBN cord-306414-2dv3qced 180 6 by by IN cord-306414-2dv3qced 180 7 many many JJ cord-306414-2dv3qced 180 8 factors factor NNS cord-306414-2dv3qced 180 9 , , , cord-306414-2dv3qced 180 10 such such JJ cord-306414-2dv3qced 180 11 as as IN cord-306414-2dv3qced 180 12 thymic thymic JJ cord-306414-2dv3qced 180 13 selection selection NN cord-306414-2dv3qced 180 14 and and CC cord-306414-2dv3qced 180 15 antigen antigen NN cord-306414-2dv3qced 180 16 - - HYPH cord-306414-2dv3qced 180 17 driven drive VBN cord-306414-2dv3qced 180 18 selection selection NN cord-306414-2dv3qced 180 19 , , , cord-306414-2dv3qced 180 20 which which WDT cord-306414-2dv3qced 180 21 can can MD cord-306414-2dv3qced 180 22 narrow narrow VB cord-306414-2dv3qced 180 23 the the DT cord-306414-2dv3qced 180 24 available available JJ cord-306414-2dv3qced 180 25 T T NNP cord-306414-2dv3qced 180 26 cell cell NN cord-306414-2dv3qced 180 27 repertoire repertoire NN cord-306414-2dv3qced 180 28 over over IN cord-306414-2dv3qced 180 29 time time NN cord-306414-2dv3qced 180 30 . . . cord-306414-2dv3qced 181 1 TCR TCR NNP cord-306414-2dv3qced 181 2 engineered engineer VBD cord-306414-2dv3qced 181 3 T t NN cord-306414-2dv3qced 181 4 cell cell NN cord-306414-2dv3qced 181 5 ( ( -LRB- cord-306414-2dv3qced 181 6 TCR TCR NNP cord-306414-2dv3qced 181 7 - - HYPH cord-306414-2dv3qced 181 8 T T NNP cord-306414-2dv3qced 181 9 ) ) -RRB- cord-306414-2dv3qced 181 10 : : : cord-306414-2dv3qced 182 1 T t NN cord-306414-2dv3qced 182 2 cells cell NNS cord-306414-2dv3qced 182 3 engineered engineer VBN cord-306414-2dv3qced 182 4 by by IN cord-306414-2dv3qced 182 5 viral viral JJ cord-306414-2dv3qced 182 6 vectors vector NNS cord-306414-2dv3qced 182 7 to to TO cord-306414-2dv3qced 182 8 express express VB cord-306414-2dv3qced 182 9 the the DT cord-306414-2dv3qced 182 10 TCR TCR NNP cord-306414-2dv3qced 182 11 gene gene NN cord-306414-2dv3qced 182 12 with with IN cord-306414-2dv3qced 182 13 defined define VBN cord-306414-2dv3qced 182 14 specificity specificity NN cord-306414-2dv3qced 182 15 . . . cord-306414-2dv3qced 183 1 These these DT cord-306414-2dv3qced 183 2 cells cell NNS cord-306414-2dv3qced 183 3 can can MD cord-306414-2dv3qced 183 4 be be VB cord-306414-2dv3qced 183 5 modified modify VBN cord-306414-2dv3qced 183 6 to to TO cord-306414-2dv3qced 183 7 target target VB cord-306414-2dv3qced 183 8 cancer cancer NN cord-306414-2dv3qced 183 9 cells cell NNS cord-306414-2dv3qced 183 10 or or CC cord-306414-2dv3qced 183 11 bacterial bacterial JJ cord-306414-2dv3qced 183 12 / / SYM cord-306414-2dv3qced 183 13 virusinfected virusinfecte VBN cord-306414-2dv3qced 183 14 cells cell NNS cord-306414-2dv3qced 183 15 . . . cord-306414-2dv3qced 184 1 TCR TCR NNP cord-306414-2dv3qced 184 2 repertoire repertoire NN cord-306414-2dv3qced 184 3 : : : cord-306414-2dv3qced 185 1 the the DT cord-306414-2dv3qced 185 2 sum sum NN cord-306414-2dv3qced 185 3 of of IN cord-306414-2dv3qced 185 4 all all DT cord-306414-2dv3qced 185 5 TCRs tcr NNS cord-306414-2dv3qced 185 6 by by IN cord-306414-2dv3qced 185 7 the the DT cord-306414-2dv3qced 185 8 T T NNP cord-306414-2dv3qced 185 9 cells cell NNS cord-306414-2dv3qced 185 10 of of IN cord-306414-2dv3qced 185 11 one one CD cord-306414-2dv3qced 185 12 individual individual NN cord-306414-2dv3qced 185 13 generated generate VBN cord-306414-2dv3qced 185 14 by by IN cord-306414-2dv3qced 185 15 somatic somatic JJ cord-306414-2dv3qced 185 16 DNA dna NN cord-306414-2dv3qced 185 17 rearrangements rearrangement NNS cord-306414-2dv3qced 185 18 . . . cord-306414-2dv3qced 186 1 TCR TCR NNP cord-306414-2dv3qced 186 2 sequencing sequencing NNP cord-306414-2dv3qced 186 3 ( ( -LRB- cord-306414-2dv3qced 186 4 TCR TCR NNP cord-306414-2dv3qced 186 5 - - HYPH cord-306414-2dv3qced 186 6 seq seq NNP cord-306414-2dv3qced 186 7 ) ) -RRB- cord-306414-2dv3qced 186 8 : : : cord-306414-2dv3qced 187 1 highthroughput highthroughput NN cord-306414-2dv3qced 187 2 sequencing sequencing NN cord-306414-2dv3qced 187 3 technologies technology NNS cord-306414-2dv3qced 187 4 used use VBN cord-306414-2dv3qced 187 5 in in IN cord-306414-2dv3qced 187 6 the the DT cord-306414-2dv3qced 187 7 examination examination NN cord-306414-2dv3qced 187 8 of of IN cord-306414-2dv3qced 187 9 antigen antigen NN cord-306414-2dv3qced 187 10 receptor receptor NN cord-306414-2dv3qced 187 11 repertoires repertoire NNS cord-306414-2dv3qced 187 12 at at IN cord-306414-2dv3qced 187 13 single single JJ cord-306414-2dv3qced 187 14 - - HYPH cord-306414-2dv3qced 187 15 nucleotide nucleotide NN cord-306414-2dv3qced 187 16 and and CC cord-306414-2dv3qced 187 17 , , , cord-306414-2dv3qced 187 18 more more RBR cord-306414-2dv3qced 187 19 recently recently RB cord-306414-2dv3qced 187 20 , , , cord-306414-2dv3qced 187 21 single single JJ cord-306414-2dv3qced 187 22 - - HYPH cord-306414-2dv3qced 187 23 cell cell NN cord-306414-2dv3qced 187 24 resolution resolution NN cord-306414-2dv3qced 187 25 . . . cord-306414-2dv3qced 188 1 Thymopoiesis thymopoiesis NN cord-306414-2dv3qced 188 2 : : : cord-306414-2dv3qced 188 3 process process NN cord-306414-2dv3qced 188 4 that that WDT cord-306414-2dv3qced 188 5 turns turn VBZ cord-306414-2dv3qced 188 6 thymocytes thymocyte NNS cord-306414-2dv3qced 188 7 into into IN cord-306414-2dv3qced 188 8 mature mature JJ cord-306414-2dv3qced 188 9 T t NN cord-306414-2dv3qced 188 10 cells cell NNS cord-306414-2dv3qced 188 11 according accord VBG cord-306414-2dv3qced 188 12 to to IN cord-306414-2dv3qced 188 13 selection selection NN cord-306414-2dv3qced 188 14 processes process NNS cord-306414-2dv3qced 188 15 . . . cord-306414-2dv3qced 189 1 This this DT cord-306414-2dv3qced 189 2 selection selection NN cord-306414-2dv3qced 189 3 process process NN cord-306414-2dv3qced 189 4 is be VBZ cord-306414-2dv3qced 189 5 vitally vitally RB cord-306414-2dv3qced 189 6 important important JJ cord-306414-2dv3qced 189 7 in in IN cord-306414-2dv3qced 189 8 shaping shape VBG cord-306414-2dv3qced 189 9 the the DT cord-306414-2dv3qced 189 10 population population NN cord-306414-2dv3qced 189 11 of of IN cord-306414-2dv3qced 189 12 thymocytes thymocyte NNS cord-306414-2dv3qced 189 13 into into IN cord-306414-2dv3qced 189 14 a a DT cord-306414-2dv3qced 189 15 peripheral peripheral JJ cord-306414-2dv3qced 189 16 pool pool NN cord-306414-2dv3qced 189 17 of of IN cord-306414-2dv3qced 189 18 T t NN cord-306414-2dv3qced 189 19 cells cell NNS cord-306414-2dv3qced 189 20 that that WDT cord-306414-2dv3qced 189 21 are be VBP cord-306414-2dv3qced 189 22 able able JJ cord-306414-2dv3qced 189 23 to to TO cord-306414-2dv3qced 189 24 respond respond VB cord-306414-2dv3qced 189 25 to to IN cord-306414-2dv3qced 189 26 foreign foreign JJ cord-306414-2dv3qced 189 27 pathogens pathogen NNS cord-306414-2dv3qced 189 28 but but CC cord-306414-2dv3qced 189 29 remain remain VBP cord-306414-2dv3qced 189 30 tolerant tolerant JJ cord-306414-2dv3qced 189 31 towards towards IN cord-306414-2dv3qced 189 32 the the DT cord-306414-2dv3qced 189 33 body body NN cord-306414-2dv3qced 189 34 's 's POS cord-306414-2dv3qced 189 35 own own JJ cord-306414-2dv3qced 189 36 antigens antigen NNS cord-306414-2dv3qced 189 37 . . . cord-306414-2dv3qced 190 1 V(D)J V(D)J NNP cord-306414-2dv3qced 190 2 recombination recombination NN cord-306414-2dv3qced 190 3 : : : cord-306414-2dv3qced 190 4 the the DT cord-306414-2dv3qced 190 5 process process NN cord-306414-2dv3qced 190 6 by by IN cord-306414-2dv3qced 190 7 which which WDT cord-306414-2dv3qced 190 8 T t NN cord-306414-2dv3qced 190 9 cells cell NNS cord-306414-2dv3qced 190 10 randomly randomly RB cord-306414-2dv3qced 190 11 assemble assemble VBP cord-306414-2dv3qced 190 12 different different JJ cord-306414-2dv3qced 190 13 gene gene NN cord-306414-2dv3qced 190 14 segments segment NNS cord-306414-2dv3qced 190 15 , , , cord-306414-2dv3qced 190 16 known know VBN cord-306414-2dv3qced 190 17 as as IN cord-306414-2dv3qced 190 18 variable variable NN cord-306414-2dv3qced 190 19 ( ( -LRB- cord-306414-2dv3qced 190 20 V v NN cord-306414-2dv3qced 190 21 ) ) -RRB- cord-306414-2dv3qced 190 22 , , , cord-306414-2dv3qced 190 23 diversity diversity NN cord-306414-2dv3qced 190 24 ( ( -LRB- cord-306414-2dv3qced 190 25 D D NNP cord-306414-2dv3qced 190 26 ) ) -RRB- cord-306414-2dv3qced 190 27 , , , cord-306414-2dv3qced 190 28 and and CC cord-306414-2dv3qced 190 29 joining join VBG cord-306414-2dv3qced 190 30 ( ( -LRB- cord-306414-2dv3qced 190 31 J J NNP cord-306414-2dv3qced 190 32 ) ) -RRB- cord-306414-2dv3qced 190 33 genes gene NNS cord-306414-2dv3qced 190 34 , , , cord-306414-2dv3qced 190 35 in in IN cord-306414-2dv3qced 190 36 order order NN cord-306414-2dv3qced 190 37 to to TO cord-306414-2dv3qced 190 38 generate generate VB cord-306414-2dv3qced 190 39 unique unique JJ cord-306414-2dv3qced 190 40 receptors receptor NNS cord-306414-2dv3qced 190 41 ( ( -LRB- cord-306414-2dv3qced 190 42 known know VBN cord-306414-2dv3qced 190 43 as as IN cord-306414-2dv3qced 190 44 T t NN cord-306414-2dv3qced 190 45 - - HYPH cord-306414-2dv3qced 190 46 cell cell NN cord-306414-2dv3qced 190 47 receptors receptor NNS cord-306414-2dv3qced 190 48 ) ) -RRB- cord-306414-2dv3qced 190 49 that that WDT cord-306414-2dv3qced 190 50 can can MD cord-306414-2dv3qced 190 51 collectively collectively RB cord-306414-2dv3qced 190 52 recognize recognize VB cord-306414-2dv3qced 190 53 many many JJ cord-306414-2dv3qced 190 54 different different JJ cord-306414-2dv3qced 190 55 types type NNS cord-306414-2dv3qced 190 56 of of IN cord-306414-2dv3qced 190 57 molecule molecule NN cord-306414-2dv3qced 190 58 . . . cord-306414-2dv3qced 191 1 Trends trend NNS cord-306414-2dv3qced 191 2 in in IN cord-306414-2dv3qced 191 3 Pharmacological Pharmacological NNP cord-306414-2dv3qced 191 4 Sciences Sciences NNPS cord-306414-2dv3qced 191 5 , , , cord-306414-2dv3qced 191 6 Month Month NNP cord-306414-2dv3qced 191 7 2020 2020 CD cord-306414-2dv3qced 191 8 , , , cord-306414-2dv3qced 191 9 Vol Vol NNP cord-306414-2dv3qced 191 10 . . . cord-306414-2dv3qced 192 1 xx xx UH cord-306414-2dv3qced 192 2 , , , cord-306414-2dv3qced 192 3 No no UH cord-306414-2dv3qced 192 4 . . . cord-306414-2dv3qced 193 1 xx xx LS cord-306414-2dv3qced 194 1 5 5 CD cord-306414-2dv3qced 194 2 Figure figure NN cord-306414-2dv3qced 194 3 1 1 CD cord-306414-2dv3qced 194 4 . . . cord-306414-2dv3qced 195 1 T T NNP cord-306414-2dv3qced 195 2 Cell Cell NNP cord-306414-2dv3qced 195 3 - - HYPH cord-306414-2dv3qced 195 4 Mediated mediate VBN cord-306414-2dv3qced 195 5 Response response NN cord-306414-2dv3qced 195 6 to to IN cord-306414-2dv3qced 195 7 Severe severe JJ cord-306414-2dv3qced 195 8 Acute acute JJ cord-306414-2dv3qced 195 9 Respiratory Respiratory NNP cord-306414-2dv3qced 195 10 Syndrome Syndrome NNP cord-306414-2dv3qced 195 11 Coronavirus Coronavirus NNP cord-306414-2dv3qced 195 12 2 2 CD cord-306414-2dv3qced 196 1 ( ( -LRB- cord-306414-2dv3qced 196 2 SARS SARS NNP cord-306414-2dv3qced 196 3 - - HYPH cord-306414-2dv3qced 196 4 CoV-2 CoV-2 NNP cord-306414-2dv3qced 196 5 ) ) -RRB- cord-306414-2dv3qced 196 6 Infection infection NN cord-306414-2dv3qced 196 7 . . . cord-306414-2dv3qced 197 1 Infection infection NN cord-306414-2dv3qced 197 2 occurs occur VBZ cord-306414-2dv3qced 197 3 in in IN cord-306414-2dv3qced 197 4 the the DT cord-306414-2dv3qced 197 5 patients patient NNS cord-306414-2dv3qced 197 6 after after IN cord-306414-2dv3qced 197 7 respiratory respiratory JJ cord-306414-2dv3qced 197 8 tract tract NN cord-306414-2dv3qced 197 9 exposure exposure NN cord-306414-2dv3qced 197 10 . . . cord-306414-2dv3qced 198 1 Subsequently subsequently RB cord-306414-2dv3qced 198 2 , , , cord-306414-2dv3qced 198 3 virus virus NN cord-306414-2dv3qced 198 4 entry entry NN cord-306414-2dv3qced 198 5 occurs occur VBZ cord-306414-2dv3qced 198 6 via via IN cord-306414-2dv3qced 198 7 binding bind VBG cord-306414-2dv3qced 198 8 to to IN cord-306414-2dv3qced 198 9 angiotensin angiotensin NN cord-306414-2dv3qced 198 10 - - HYPH cord-306414-2dv3qced 198 11 converting convert VBG cord-306414-2dv3qced 198 12 enzyme enzyme NN cord-306414-2dv3qced 198 13 2 2 CD cord-306414-2dv3qced 198 14 ( ( -LRB- cord-306414-2dv3qced 198 15 ACE2 ACE2 NNP cord-306414-2dv3qced 198 16 ) ) -RRB- cord-306414-2dv3qced 198 17 on on IN cord-306414-2dv3qced 198 18 the the DT cord-306414-2dv3qced 198 19 surface surface NN cord-306414-2dv3qced 198 20 of of IN cord-306414-2dv3qced 198 21 various various JJ cord-306414-2dv3qced 198 22 cell cell NN cord-306414-2dv3qced 198 23 types type NNS cord-306414-2dv3qced 198 24 and and CC cord-306414-2dv3qced 198 25 begins begin VBZ cord-306414-2dv3qced 198 26 viral viral JJ cord-306414-2dv3qced 198 27 replication replication NN cord-306414-2dv3qced 198 28 . . . cord-306414-2dv3qced 199 1 Antigen antigen NN cord-306414-2dv3qced 199 2 - - HYPH cord-306414-2dv3qced 199 3 presenting present VBG cord-306414-2dv3qced 199 4 cells cell NNS cord-306414-2dv3qced 199 5 such such JJ cord-306414-2dv3qced 199 6 as as IN cord-306414-2dv3qced 199 7 dendritic dendritic JJ cord-306414-2dv3qced 199 8 cells cell NNS cord-306414-2dv3qced 199 9 endocytose endocytose VBP cord-306414-2dv3qced 199 10 the the DT cord-306414-2dv3qced 199 11 SARS SARS NNP cord-306414-2dv3qced 199 12 - - HYPH cord-306414-2dv3qced 199 13 CoV-2 CoV-2 NNP cord-306414-2dv3qced 199 14 virus virus NN cord-306414-2dv3qced 199 15 and and CC cord-306414-2dv3qced 199 16 degrade degrade VB cord-306414-2dv3qced 199 17 them -PRON- PRP cord-306414-2dv3qced 199 18 through through IN cord-306414-2dv3qced 199 19 a a DT cord-306414-2dv3qced 199 20 process process NN cord-306414-2dv3qced 199 21 called call VBN cord-306414-2dv3qced 199 22 antigen antigen NN cord-306414-2dv3qced 199 23 processing processing NN cord-306414-2dv3qced 199 24 . . . cord-306414-2dv3qced 200 1 These these DT cord-306414-2dv3qced 200 2 antigen antigen NN cord-306414-2dv3qced 200 3 fragments fragment NNS cord-306414-2dv3qced 200 4 are be VBP cord-306414-2dv3qced 200 5 then then RB cord-306414-2dv3qced 200 6 presented present VBN cord-306414-2dv3qced 200 7 by by IN cord-306414-2dv3qced 200 8 proteins protein NNS cord-306414-2dv3qced 200 9 termed term VBN cord-306414-2dv3qced 200 10 ' ' `` cord-306414-2dv3qced 200 11 MHC MHC NNP cord-306414-2dv3qced 200 12 class class NN cord-306414-2dv3qced 200 13 molecules molecule NNS cord-306414-2dv3qced 200 14 ' ' '' cord-306414-2dv3qced 200 15 , , , cord-306414-2dv3qced 200 16 on on IN cord-306414-2dv3qced 200 17 the the DT cord-306414-2dv3qced 200 18 cell cell NN cord-306414-2dv3qced 200 19 surface surface NN cord-306414-2dv3qced 200 20 and and CC cord-306414-2dv3qced 200 21 allow allow VB cord-306414-2dv3qced 200 22 recognition recognition NN cord-306414-2dv3qced 200 23 by by IN cord-306414-2dv3qced 200 24 a a DT cord-306414-2dv3qced 200 25 T T NNP cord-306414-2dv3qced 200 26 cell cell NN cord-306414-2dv3qced 200 27 . . . cord-306414-2dv3qced 201 1 If if IN cord-306414-2dv3qced 201 2 a a DT cord-306414-2dv3qced 201 3 CD8 CD8 NNP cord-306414-2dv3qced 201 4 + + CC cord-306414-2dv3qced 201 5 T t NN cord-306414-2dv3qced 201 6 cell cell NN cord-306414-2dv3qced 201 7 is be VBZ cord-306414-2dv3qced 201 8 capable capable JJ cord-306414-2dv3qced 201 9 of of IN cord-306414-2dv3qced 201 10 binding bind VBG cord-306414-2dv3qced 201 11 , , , cord-306414-2dv3qced 201 12 it -PRON- PRP cord-306414-2dv3qced 201 13 will will MD cord-306414-2dv3qced 201 14 undergo undergo VB cord-306414-2dv3qced 201 15 clonal clonal JJ cord-306414-2dv3qced 201 16 expansion expansion NN cord-306414-2dv3qced 201 17 and and CC cord-306414-2dv3qced 201 18 directly directly RB cord-306414-2dv3qced 201 19 target target VB cord-306414-2dv3qced 201 20 infected infected JJ cord-306414-2dv3qced 201 21 cells cell NNS cord-306414-2dv3qced 201 22 through through IN cord-306414-2dv3qced 201 23 either either DT cord-306414-2dv3qced 201 24 perforin perforin NNP cord-306414-2dv3qced 201 25 / / SYM cord-306414-2dv3qced 201 26 granzymes granzyme NNS cord-306414-2dv3qced 201 27 , , , cord-306414-2dv3qced 201 28 FAS FAS NNP cord-306414-2dv3qced 201 29 ligand ligand NN cord-306414-2dv3qced 201 30 / / SYM cord-306414-2dv3qced 201 31 tumor tumor NN cord-306414-2dv3qced 201 32 necrosis necrosis NN cord-306414-2dv3qced 201 33 factor factor NN cord-306414-2dv3qced 201 34 - - HYPH cord-306414-2dv3qced 201 35 related relate VBN cord-306414-2dv3qced 201 36 apoptosisinducing apoptosisinducing NN cord-306414-2dv3qced 201 37 ligand ligand NN cord-306414-2dv3qced 201 38 ( ( -LRB- cord-306414-2dv3qced 201 39 TRAIL TRAIL NNP cord-306414-2dv3qced 201 40 ) ) -RRB- cord-306414-2dv3qced 201 41 pathways pathway NNS cord-306414-2dv3qced 201 42 , , , cord-306414-2dv3qced 201 43 or or CC cord-306414-2dv3qced 201 44 secretion secretion NN cord-306414-2dv3qced 201 45 of of IN cord-306414-2dv3qced 201 46 proinflammatory proinflammatory JJ cord-306414-2dv3qced 201 47 mediators mediator NNS cord-306414-2dv3qced 201 48 . . . cord-306414-2dv3qced 202 1 If if IN cord-306414-2dv3qced 202 2 the the DT cord-306414-2dv3qced 202 3 CD4 CD4 NNP cord-306414-2dv3qced 202 4 + + CC cord-306414-2dv3qced 202 5 T T NNP cord-306414-2dv3qced 202 6 cell cell NN cord-306414-2dv3qced 202 7 is be VBZ cord-306414-2dv3qced 202 8 capable capable JJ cord-306414-2dv3qced 202 9 of of IN cord-306414-2dv3qced 202 10 binding bind VBG cord-306414-2dv3qced 202 11 , , , cord-306414-2dv3qced 202 12 it -PRON- PRP cord-306414-2dv3qced 202 13 can can MD cord-306414-2dv3qced 202 14 activate activate VB cord-306414-2dv3qced 202 15 B b NN cord-306414-2dv3qced 202 16 cells cell NNS cord-306414-2dv3qced 202 17 that that WDT cord-306414-2dv3qced 202 18 recognize recognize VBP cord-306414-2dv3qced 202 19 the the DT cord-306414-2dv3qced 202 20 antigen antigen NN cord-306414-2dv3qced 202 21 by by IN cord-306414-2dv3qced 202 22 causing cause VBG cord-306414-2dv3qced 202 23 them -PRON- PRP cord-306414-2dv3qced 202 24 to to TO cord-306414-2dv3qced 202 25 clonally clonally RB cord-306414-2dv3qced 202 26 proliferate proliferate VB cord-306414-2dv3qced 202 27 and and CC cord-306414-2dv3qced 202 28 secrete secrete VB cord-306414-2dv3qced 202 29 antibodies antibody NNS cord-306414-2dv3qced 202 30 to to TO cord-306414-2dv3qced 202 31 target target VB cord-306414-2dv3qced 202 32 the the DT cord-306414-2dv3qced 202 33 SARS SARS NNP cord-306414-2dv3qced 202 34 - - HYPH cord-306414-2dv3qced 202 35 CoV-2 CoV-2 NNP cord-306414-2dv3qced 202 36 virus virus NN cord-306414-2dv3qced 202 37 . . . cord-306414-2dv3qced 203 1 Abbreviations abbreviation NNS cord-306414-2dv3qced 203 2 : : : cord-306414-2dv3qced 203 3 BCR BCR NNP cord-306414-2dv3qced 203 4 , , , cord-306414-2dv3qced 203 5 B b NN cord-306414-2dv3qced 203 6 cell cell NN cord-306414-2dv3qced 203 7 receptor receptor NN cord-306414-2dv3qced 203 8 ; ; : cord-306414-2dv3qced 203 9 MHC MHC NNP cord-306414-2dv3qced 203 10 , , , cord-306414-2dv3qced 203 11 major major JJ cord-306414-2dv3qced 203 12 histocompatibility histocompatibility NN cord-306414-2dv3qced 203 13 complex complex NN cord-306414-2dv3qced 203 14 ; ; : cord-306414-2dv3qced 203 15 TCR TCR NNP cord-306414-2dv3qced 203 16 , , , cord-306414-2dv3qced 203 17 T T NNP cord-306414-2dv3qced 203 18 cell cell NN cord-306414-2dv3qced 203 19 receptor receptor NN cord-306414-2dv3qced 203 20 . . . cord-306414-2dv3qced 204 1 then then RB cord-306414-2dv3qced 204 2 weekly weekly RB cord-306414-2dv3qced 204 3 till till IN cord-306414-2dv3qced 204 4 recovery recovery NN cord-306414-2dv3qced 204 5 or or CC cord-306414-2dv3qced 204 6 even even RB cord-306414-2dv3qced 204 7 afterward afterward RB cord-306414-2dv3qced 204 8 to to TO cord-306414-2dv3qced 204 9 track track VB cord-306414-2dv3qced 204 10 memory memory NN cord-306414-2dv3qced 204 11 T T NNP cord-306414-2dv3qced 204 12 cell cell NN cord-306414-2dv3qced 204 13 clones clone NNS cord-306414-2dv3qced 204 14 . . . cord-306414-2dv3qced 205 1 SARS SARS NNP cord-306414-2dv3qced 205 2 - - HYPH cord-306414-2dv3qced 205 3 CoV-2 CoV-2 NNP cord-306414-2dv3qced 205 4 reactive reactive JJ cord-306414-2dv3qced 205 5 T t NN cord-306414-2dv3qced 205 6 cells cell NNS cord-306414-2dv3qced 205 7 would would MD cord-306414-2dv3qced 205 8 transiently transiently RB cord-306414-2dv3qced 205 9 appear appear VB cord-306414-2dv3qced 205 10 / / SYM cord-306414-2dv3qced 205 11 persist persist VBP cord-306414-2dv3qced 205 12 in in IN cord-306414-2dv3qced 205 13 blood blood NN cord-306414-2dv3qced 205 14 as as IN cord-306414-2dv3qced 205 15 they -PRON- PRP cord-306414-2dv3qced 205 16 migrate migrate VBP cord-306414-2dv3qced 205 17 from from IN cord-306414-2dv3qced 205 18 lymph lymph NN cord-306414-2dv3qced 205 19 nodes node NNS cord-306414-2dv3qced 205 20 to to IN cord-306414-2dv3qced 205 21 tissue tissue VB cord-306414-2dv3qced 205 22 sites site NNS cord-306414-2dv3qced 205 23 via via IN cord-306414-2dv3qced 205 24 peripheral peripheral JJ cord-306414-2dv3qced 205 25 blood blood NN cord-306414-2dv3qced 205 26 circulation circulation NN cord-306414-2dv3qced 205 27 and and CC cord-306414-2dv3qced 205 28 thus thus RB cord-306414-2dv3qced 205 29 could could MD cord-306414-2dv3qced 205 30 be be VB cord-306414-2dv3qced 205 31 captured capture VBN cord-306414-2dv3qced 205 32 in in IN cord-306414-2dv3qced 205 33 peripheral peripheral JJ cord-306414-2dv3qced 205 34 blood blood NN cord-306414-2dv3qced 205 35 samples sample NNS cord-306414-2dv3qced 205 36 . . . cord-306414-2dv3qced 206 1 However however RB cord-306414-2dv3qced 206 2 , , , cord-306414-2dv3qced 206 3 it -PRON- PRP cord-306414-2dv3qced 206 4 is be VBZ cord-306414-2dv3qced 206 5 possible possible JJ cord-306414-2dv3qced 206 6 that that IN cord-306414-2dv3qced 206 7 their -PRON- PRP$ cord-306414-2dv3qced 206 8 frequency frequency NN cord-306414-2dv3qced 206 9 in in IN cord-306414-2dv3qced 206 10 the the DT cord-306414-2dv3qced 206 11 blood blood NN cord-306414-2dv3qced 206 12 may may MD cord-306414-2dv3qced 206 13 be be VB cord-306414-2dv3qced 206 14 low low JJ cord-306414-2dv3qced 206 15 . . . cord-306414-2dv3qced 207 1 It -PRON- PRP cord-306414-2dv3qced 207 2 is be VBZ cord-306414-2dv3qced 207 3 also also RB cord-306414-2dv3qced 207 4 possible possible JJ cord-306414-2dv3qced 207 5 that that IN cord-306414-2dv3qced 207 6 the the DT cord-306414-2dv3qced 207 7 lymphocytopenia lymphocytopenia NNP cord-306414-2dv3qced 207 8 observed observe VBN cord-306414-2dv3qced 207 9 in in IN cord-306414-2dv3qced 207 10 COVID-19 COVID-19 NNP cord-306414-2dv3qced 207 11 patients patient NNS cord-306414-2dv3qced 207 12 ( ( -LRB- cord-306414-2dv3qced 207 13 particularly particularly RB cord-306414-2dv3qced 207 14 in in IN cord-306414-2dv3qced 207 15 severe severe JJ cord-306414-2dv3qced 207 16 cases case NNS cord-306414-2dv3qced 207 17 ) ) -RRB- cord-306414-2dv3qced 207 18 could could MD cord-306414-2dv3qced 207 19 require require VB cord-306414-2dv3qced 207 20 a a DT cord-306414-2dv3qced 207 21 larger large JJR cord-306414-2dv3qced 207 22 volume volume NN cord-306414-2dv3qced 207 23 of of IN cord-306414-2dv3qced 207 24 blood blood NN cord-306414-2dv3qced 207 25 to to TO cord-306414-2dv3qced 207 26 obtain obtain VB cord-306414-2dv3qced 207 27 a a DT cord-306414-2dv3qced 207 28 sufficient sufficient JJ cord-306414-2dv3qced 207 29 number number NN cord-306414-2dv3qced 207 30 of of IN cord-306414-2dv3qced 207 31 T t NN cord-306414-2dv3qced 207 32 cells cell NNS cord-306414-2dv3qced 207 33 for for IN cord-306414-2dv3qced 207 34 comprehensive comprehensive JJ cord-306414-2dv3qced 207 35 TCR TCR NNP cord-306414-2dv3qced 207 36 repertoire repertoire NN cord-306414-2dv3qced 207 37 profiling profiling NN cord-306414-2dv3qced 207 38 . . . cord-306414-2dv3qced 208 1 Another another DT cord-306414-2dv3qced 208 2 drawback drawback NN cord-306414-2dv3qced 208 3 to to IN cord-306414-2dv3qced 208 4 using use VBG cord-306414-2dv3qced 208 5 peripheral peripheral JJ cord-306414-2dv3qced 208 6 blood blood NN cord-306414-2dv3qced 208 7 samples sample NNS cord-306414-2dv3qced 208 8 is be VBZ cord-306414-2dv3qced 208 9 that that IN cord-306414-2dv3qced 208 10 they -PRON- PRP cord-306414-2dv3qced 208 11 would would MD cord-306414-2dv3qced 208 12 not not RB cord-306414-2dv3qced 208 13 capture capture VB cord-306414-2dv3qced 208 14 SARS SARS NNP cord-306414-2dv3qced 208 15 - - HYPH cord-306414-2dv3qced 208 16 CoV-2-specific CoV-2-specific NNP cord-306414-2dv3qced 208 17 T T NNP cord-306414-2dv3qced 208 18 cell cell NN cord-306414-2dv3qced 208 19 expansion expansion NN cord-306414-2dv3qced 208 20 as as RB cord-306414-2dv3qced 208 21 well well RB cord-306414-2dv3qced 208 22 as as IN cord-306414-2dv3qced 208 23 samples sample NNS cord-306414-2dv3qced 208 24 from from IN cord-306414-2dv3qced 208 25 infected infected JJ cord-306414-2dv3qced 208 26 tissues tissue NNS cord-306414-2dv3qced 208 27 such such JJ cord-306414-2dv3qced 208 28 as as IN cord-306414-2dv3qced 208 29 lung lung NN cord-306414-2dv3qced 208 30 samples sample NNS cord-306414-2dv3qced 209 1 would would MD cord-306414-2dv3qced 209 2 , , , cord-306414-2dv3qced 209 3 as as IN cord-306414-2dv3qced 209 4 SARS SARS NNP cord-306414-2dv3qced 209 5 - - HYPH cord-306414-2dv3qced 209 6 CoV-2 CoV-2 NNP cord-306414-2dv3qced 209 7 T t NN cord-306414-2dv3qced 209 8 cells cell NNS cord-306414-2dv3qced 209 9 would would MD cord-306414-2dv3qced 209 10 transiently transiently RB cord-306414-2dv3qced 209 11 persist persist VB cord-306414-2dv3qced 209 12 in in IN cord-306414-2dv3qced 209 13 peripheral peripheral JJ cord-306414-2dv3qced 209 14 blood blood NN cord-306414-2dv3qced 209 15 circulation circulation NN cord-306414-2dv3qced 209 16 . . . cord-306414-2dv3qced 210 1 Ultimately ultimately RB cord-306414-2dv3qced 210 2 , , , cord-306414-2dv3qced 210 3 sample sample NN cord-306414-2dv3qced 210 4 selection selection NN cord-306414-2dv3qced 210 5 and and CC cord-306414-2dv3qced 210 6 collection collection NN cord-306414-2dv3qced 210 7 schedule schedule NN cord-306414-2dv3qced 210 8 will will MD cord-306414-2dv3qced 210 9 vary vary VB cord-306414-2dv3qced 210 10 based base VBN cord-306414-2dv3qced 210 11 on on IN cord-306414-2dv3qced 210 12 study study NN cord-306414-2dv3qced 210 13 objectives objective NNS cord-306414-2dv3qced 210 14 and and CC cord-306414-2dv3qced 210 15 composed compose VBN cord-306414-2dv3qced 210 16 of of IN cord-306414-2dv3qced 210 17 the the DT cord-306414-2dv3qced 210 18 alpha alpha NN cord-306414-2dv3qced 210 19 ( ( -LRB- cord-306414-2dv3qced 210 20 α α NN cord-306414-2dv3qced 210 21 ) ) -RRB- cord-306414-2dv3qced 210 22 and and CC cord-306414-2dv3qced 210 23 beta beta NN cord-306414-2dv3qced 210 24 ( ( -LRB- cord-306414-2dv3qced 210 25 β β NN cord-306414-2dv3qced 210 26 ) ) -RRB- cord-306414-2dv3qced 210 27 subunit subunit NN cord-306414-2dv3qced 210 28 . . . cord-306414-2dv3qced 211 1 During during IN cord-306414-2dv3qced 211 2 T T NNP cord-306414-2dv3qced 211 3 cell cell NN cord-306414-2dv3qced 211 4 development development NN cord-306414-2dv3qced 211 5 , , , cord-306414-2dv3qced 211 6 the the DT cord-306414-2dv3qced 211 7 loci locus NNS cord-306414-2dv3qced 211 8 that that WDT cord-306414-2dv3qced 211 9 encode encode VBP cord-306414-2dv3qced 211 10 T T NNP cord-306414-2dv3qced 211 11 cell cell NN cord-306414-2dv3qced 211 12 receptor receptor NN cord-306414-2dv3qced 211 13 α α NN cord-306414-2dv3qced 211 14 and and CC cord-306414-2dv3qced 211 15 β β NN cord-306414-2dv3qced 211 16 - - HYPH cord-306414-2dv3qced 211 17 chains chain NNS cord-306414-2dv3qced 211 18 are be VBP cord-306414-2dv3qced 211 19 rearranged rearrange VBN cord-306414-2dv3qced 211 20 . . . cord-306414-2dv3qced 212 1 Variable variable JJ cord-306414-2dv3qced 212 2 ( ( -LRB- cord-306414-2dv3qced 212 3 V v NN cord-306414-2dv3qced 212 4 ) ) -RRB- cord-306414-2dv3qced 212 5 , , , cord-306414-2dv3qced 212 6 diversity diversity NN cord-306414-2dv3qced 212 7 ( ( -LRB- cord-306414-2dv3qced 212 8 D D NNP cord-306414-2dv3qced 212 9 ) ) -RRB- cord-306414-2dv3qced 212 10 , , , cord-306414-2dv3qced 212 11 joining join VBG cord-306414-2dv3qced 212 12 ( ( -LRB- cord-306414-2dv3qced 212 13 J J NNP cord-306414-2dv3qced 212 14 ) ) -RRB- cord-306414-2dv3qced 212 15 , , , cord-306414-2dv3qced 212 16 and and CC cord-306414-2dv3qced 213 1 constant constant JJ cord-306414-2dv3qced 213 2 ( ( -LRB- cord-306414-2dv3qced 213 3 C c NN cord-306414-2dv3qced 213 4 ) ) -RRB- cord-306414-2dv3qced 213 5 gene gene NN cord-306414-2dv3qced 213 6 segments segment NNS cord-306414-2dv3qced 213 7 are be VBP cord-306414-2dv3qced 213 8 represented represent VBN cord-306414-2dv3qced 213 9 as as IN cord-306414-2dv3qced 213 10 blue blue JJ cord-306414-2dv3qced 213 11 , , , cord-306414-2dv3qced 213 12 red red JJ cord-306414-2dv3qced 213 13 , , , cord-306414-2dv3qced 213 14 green green JJ cord-306414-2dv3qced 213 15 , , , cord-306414-2dv3qced 213 16 and and CC cord-306414-2dv3qced 213 17 purple purple JJ cord-306414-2dv3qced 213 18 rectangles rectangle NNS cord-306414-2dv3qced 213 19 , , , cord-306414-2dv3qced 213 20 respectively respectively RB cord-306414-2dv3qced 213 21 . . . cord-306414-2dv3qced 214 1 Diversity diversity NN cord-306414-2dv3qced 214 2 for for IN cord-306414-2dv3qced 214 3 the the DT cord-306414-2dv3qced 214 4 β β NNP cord-306414-2dv3qced 214 5 chain chain NN cord-306414-2dv3qced 214 6 is be VBZ cord-306414-2dv3qced 214 7 first first RB cord-306414-2dv3qced 214 8 created create VBN cord-306414-2dv3qced 214 9 via via IN cord-306414-2dv3qced 214 10 recombination recombination NN cord-306414-2dv3qced 214 11 of of IN cord-306414-2dv3qced 214 12 D D NNP cord-306414-2dv3qced 214 13 and and CC cord-306414-2dv3qced 214 14 J J NNP cord-306414-2dv3qced 214 15 segments segment NNS cord-306414-2dv3qced 214 16 , , , cord-306414-2dv3qced 214 17 followed follow VBN cord-306414-2dv3qced 214 18 by by IN cord-306414-2dv3qced 214 19 the the DT cord-306414-2dv3qced 214 20 V v NN cord-306414-2dv3qced 214 21 segments segment NNS cord-306414-2dv3qced 214 22 , , , cord-306414-2dv3qced 214 23 and and CC cord-306414-2dv3qced 214 24 finally finally RB cord-306414-2dv3qced 214 25 one one CD cord-306414-2dv3qced 214 26 of of IN cord-306414-2dv3qced 214 27 two two CD cord-306414-2dv3qced 214 28 C c NN cord-306414-2dv3qced 214 29 segments segment NNS cord-306414-2dv3qced 214 30 . . . cord-306414-2dv3qced 215 1 Diversity diversity NN cord-306414-2dv3qced 215 2 for for IN cord-306414-2dv3qced 215 3 the the DT cord-306414-2dv3qced 215 4 α α NNP cord-306414-2dv3qced 215 5 chain chain NN cord-306414-2dv3qced 215 6 is be VBZ cord-306414-2dv3qced 215 7 created create VBN cord-306414-2dv3qced 215 8 via via IN cord-306414-2dv3qced 215 9 recombination recombination NN cord-306414-2dv3qced 215 10 of of IN cord-306414-2dv3qced 215 11 V V NNP cord-306414-2dv3qced 215 12 and and CC cord-306414-2dv3qced 215 13 J J NNP cord-306414-2dv3qced 215 14 segments segment NNS cord-306414-2dv3qced 215 15 , , , cord-306414-2dv3qced 215 16 followed follow VBN cord-306414-2dv3qced 215 17 by by IN cord-306414-2dv3qced 215 18 the the DT cord-306414-2dv3qced 215 19 one one CD cord-306414-2dv3qced 215 20 C c NN cord-306414-2dv3qced 215 21 segment segment NN cord-306414-2dv3qced 215 22 . . . cord-306414-2dv3qced 216 1 This this DT cord-306414-2dv3qced 216 2 process process NN cord-306414-2dv3qced 216 3 also also RB cord-306414-2dv3qced 216 4 involves involve VBZ cord-306414-2dv3qced 216 5 the the DT cord-306414-2dv3qced 216 6 deletion deletion NN cord-306414-2dv3qced 216 7 and and CC cord-306414-2dv3qced 216 8 insertion insertion NN cord-306414-2dv3qced 216 9 of of IN cord-306414-2dv3qced 216 10 nucleotides nucleotide NNS cord-306414-2dv3qced 216 11 at at IN cord-306414-2dv3qced 216 12 the the DT cord-306414-2dv3qced 216 13 V v NN cord-306414-2dv3qced 216 14 - - HYPH cord-306414-2dv3qced 216 15 D D NNP cord-306414-2dv3qced 216 16 , , , cord-306414-2dv3qced 216 17 D D NNP cord-306414-2dv3qced 216 18 - - HYPH cord-306414-2dv3qced 216 19 J J NNP cord-306414-2dv3qced 216 20 junctions junction NNS cord-306414-2dv3qced 216 21 for for IN cord-306414-2dv3qced 216 22 the the DT cord-306414-2dv3qced 216 23 β β NNP cord-306414-2dv3qced 216 24 chain chain NN cord-306414-2dv3qced 216 25 and and CC cord-306414-2dv3qced 216 26 V V NNP cord-306414-2dv3qced 216 27 - - HYPH cord-306414-2dv3qced 216 28 J J NNP cord-306414-2dv3qced 216 29 junctions junction NNS cord-306414-2dv3qced 216 30 for for IN cord-306414-2dv3qced 216 31 the the DT cord-306414-2dv3qced 216 32 α α NNP cord-306414-2dv3qced 216 33 chain chain NN cord-306414-2dv3qced 216 34 , , , cord-306414-2dv3qced 216 35 thus thus RB cord-306414-2dv3qced 216 36 adding add VBG cord-306414-2dv3qced 216 37 more more JJR cord-306414-2dv3qced 216 38 potential potential JJ cord-306414-2dv3qced 216 39 diversity diversity NN cord-306414-2dv3qced 216 40 to to IN cord-306414-2dv3qced 216 41 the the DT cord-306414-2dv3qced 216 42 TCR TCR NNP cord-306414-2dv3qced 216 43 repertoire repertoire NN cord-306414-2dv3qced 216 44 . . . cord-306414-2dv3qced 217 1 the the DT cord-306414-2dv3qced 217 2 TCR TCR NNP cord-306414-2dv3qced 217 3 profiling profiling NN cord-306414-2dv3qced 217 4 analysis analysis NN cord-306414-2dv3qced 217 5 platform platform NN cord-306414-2dv3qced 217 6 , , , cord-306414-2dv3qced 217 7 which which WDT cord-306414-2dv3qced 217 8 would would MD cord-306414-2dv3qced 217 9 affect affect VB cord-306414-2dv3qced 217 10 sample sample NN cord-306414-2dv3qced 217 11 collection collection NN cord-306414-2dv3qced 217 12 and and CC cord-306414-2dv3qced 217 13 storage storage NN cord-306414-2dv3qced 217 14 ( ( -LRB- cord-306414-2dv3qced 217 15 cells cell NNS cord-306414-2dv3qced 217 16 , , , cord-306414-2dv3qced 217 17 RNA RNA NNP cord-306414-2dv3qced 217 18 , , , cord-306414-2dv3qced 217 19 or or CC cord-306414-2dv3qced 217 20 DNA DNA NNP cord-306414-2dv3qced 217 21 ) ) -RRB- cord-306414-2dv3qced 217 22 . . . cord-306414-2dv3qced 218 1 Sequencing Sequencing NNP cord-306414-2dv3qced 218 2 Platforms Platforms NNPS cord-306414-2dv3qced 218 3 Efforts effort NNS cord-306414-2dv3qced 218 4 to to TO cord-306414-2dv3qced 218 5 characterize characterize VB cord-306414-2dv3qced 218 6 the the DT cord-306414-2dv3qced 218 7 TCR TCR NNP cord-306414-2dv3qced 218 8 repertoire repertoire NN cord-306414-2dv3qced 218 9 in in IN cord-306414-2dv3qced 218 10 health health NN cord-306414-2dv3qced 218 11 and and CC cord-306414-2dv3qced 218 12 disease disease NN cord-306414-2dv3qced 218 13 have have VBP cord-306414-2dv3qced 218 14 increased increase VBN cord-306414-2dv3qced 218 15 dramatically dramatically RB cord-306414-2dv3qced 218 16 in in IN cord-306414-2dv3qced 218 17 recent recent JJ cord-306414-2dv3qced 218 18 years year NNS cord-306414-2dv3qced 218 19 due due IN cord-306414-2dv3qced 218 20 to to IN cord-306414-2dv3qced 218 21 advances advance NNS cord-306414-2dv3qced 218 22 in in IN cord-306414-2dv3qced 218 23 sequencing sequencing NN cord-306414-2dv3qced 218 24 technologies technology NNS cord-306414-2dv3qced 218 25 . . . cord-306414-2dv3qced 219 1 TCR TCR NNP cord-306414-2dv3qced 219 2 - - HYPH cord-306414-2dv3qced 219 3 seq seq NNP cord-306414-2dv3qced 219 4 has have VBZ cord-306414-2dv3qced 219 5 provided provide VBN cord-306414-2dv3qced 219 6 important important JJ cord-306414-2dv3qced 219 7 new new JJ cord-306414-2dv3qced 219 8 insights insight NNS cord-306414-2dv3qced 219 9 into into IN cord-306414-2dv3qced 219 10 the the DT cord-306414-2dv3qced 219 11 human human JJ cord-306414-2dv3qced 219 12 TCR TCR NNP cord-306414-2dv3qced 219 13 repertoire repertoire NN cord-306414-2dv3qced 219 14 , , , cord-306414-2dv3qced 219 15 such such JJ cord-306414-2dv3qced 219 16 as as IN cord-306414-2dv3qced 219 17 the the DT cord-306414-2dv3qced 219 18 more more RBR cord-306414-2dv3qced 219 19 accurate accurate JJ cord-306414-2dv3qced 219 20 estimation estimation NN cord-306414-2dv3qced 219 21 of of IN cord-306414-2dv3qced 219 22 the the DT cord-306414-2dv3qced 219 23 repertoire repertoire NN cord-306414-2dv3qced 219 24 size size NN cord-306414-2dv3qced 219 25 and and CC cord-306414-2dv3qced 219 26 the the DT cord-306414-2dv3qced 219 27 presence presence NN cord-306414-2dv3qced 219 28 of of IN cord-306414-2dv3qced 219 29 TCRs tcr NNS cord-306414-2dv3qced 219 30 that that WDT cord-306414-2dv3qced 219 31 are be VBP cord-306414-2dv3qced 219 32 shared share VBN cord-306414-2dv3qced 219 33 by by IN cord-306414-2dv3qced 219 34 multiple multiple JJ cord-306414-2dv3qced 219 35 individuals individual NNS cord-306414-2dv3qced 219 36 . . . cord-306414-2dv3qced 220 1 TCR TCR NNP cord-306414-2dv3qced 220 2 - - HYPH cord-306414-2dv3qced 220 3 seq seq NNP cord-306414-2dv3qced 220 4 is be VBZ cord-306414-2dv3qced 220 5 different different JJ cord-306414-2dv3qced 220 6 from from IN cord-306414-2dv3qced 220 7 standard standard JJ cord-306414-2dv3qced 220 8 DNA DNA NNP cord-306414-2dv3qced 220 9 / / SYM cord-306414-2dv3qced 220 10 RNA RNA NNP cord-306414-2dv3qced 220 11 - - HYPH cord-306414-2dv3qced 220 12 seq seq NN cord-306414-2dv3qced 220 13 in in IN cord-306414-2dv3qced 220 14 that that DT cord-306414-2dv3qced 220 15 library library NN cord-306414-2dv3qced 220 16 preparation preparation NN cord-306414-2dv3qced 220 17 is be VBZ cord-306414-2dv3qced 220 18 achieved achieve VBN cord-306414-2dv3qced 220 19 through through IN cord-306414-2dv3qced 220 20 selective selective JJ cord-306414-2dv3qced 220 21 amplification amplification NN cord-306414-2dv3qced 220 22 of of IN cord-306414-2dv3qced 220 23 TCR TCR NNP cord-306414-2dv3qced 220 24 gene gene NN cord-306414-2dv3qced 220 25 products product NNS cord-306414-2dv3qced 220 26 , , , cord-306414-2dv3qced 220 27 allowing allow VBG cord-306414-2dv3qced 220 28 the the DT cord-306414-2dv3qced 220 29 capture capture NN cord-306414-2dv3qced 220 30 of of IN cord-306414-2dv3qced 220 31 the the DT cord-306414-2dv3qced 220 32 TCR TCR NNP cord-306414-2dv3qced 220 33 repertoire repertoire NN cord-306414-2dv3qced 220 34 at at IN cord-306414-2dv3qced 220 35 lower low JJR cord-306414-2dv3qced 220 36 overall overall JJ cord-306414-2dv3qced 220 37 financial financial JJ cord-306414-2dv3qced 220 38 , , , cord-306414-2dv3qced 220 39 reagent reagent NN cord-306414-2dv3qced 220 40 , , , cord-306414-2dv3qced 220 41 and and CC cord-306414-2dv3qced 220 42 data data NN cord-306414-2dv3qced 220 43 storage storage NN cord-306414-2dv3qced 220 44 costs cost NNS cord-306414-2dv3qced 220 45 . . . cord-306414-2dv3qced 221 1 Different different JJ cord-306414-2dv3qced 221 2 methods method NNS cord-306414-2dv3qced 221 3 have have VBP cord-306414-2dv3qced 221 4 been be VBN cord-306414-2dv3qced 221 5 developed develop VBN cord-306414-2dv3qced 221 6 to to TO cord-306414-2dv3qced 221 7 analyze analyze VB cord-306414-2dv3qced 221 8 the the DT cord-306414-2dv3qced 221 9 TCR TCR NNP cord-306414-2dv3qced 221 10 repertoire repertoire NN cord-306414-2dv3qced 221 11 via via IN cord-306414-2dv3qced 221 12 next next JJ cord-306414-2dv3qced 221 13 generation generation NN cord-306414-2dv3qced 221 14 sequencing sequencing NN cord-306414-2dv3qced 221 15 using use VBG cord-306414-2dv3qced 221 16 genomic genomic JJ cord-306414-2dv3qced 221 17 DNA dna NN cord-306414-2dv3qced 221 18 ( ( -LRB- cord-306414-2dv3qced 221 19 gDNA gDNA NNP cord-306414-2dv3qced 221 20 ) ) -RRB- cord-306414-2dv3qced 221 21 and and CC cord-306414-2dv3qced 221 22 RNA RNA NNP cord-306414-2dv3qced 221 23 as as IN cord-306414-2dv3qced 221 24 input input NN cord-306414-2dv3qced 221 25 . . . cord-306414-2dv3qced 222 1 Multiplex multiplex NN cord-306414-2dv3qced 222 2 -19 -19 CD cord-306414-2dv3qced 222 3 ) ) -RRB- cord-306414-2dv3qced 223 1 to to TO cord-306414-2dv3qced 223 2 Determine determine VB cord-306414-2dv3qced 223 3 Herd herd VB cord-306414-2dv3qced 223 4 Immunity Immunity NNP cord-306414-2dv3qced 223 5 . . . cord-306414-2dv3qced 224 1 ( ( -LRB- cord-306414-2dv3qced 224 2 A a DT cord-306414-2dv3qced 224 3 ) ) -RRB- cord-306414-2dv3qced 224 4 Peripheral peripheral JJ cord-306414-2dv3qced 224 5 blood blood NN cord-306414-2dv3qced 224 6 samples sample NNS cord-306414-2dv3qced 224 7 collected collect VBN cord-306414-2dv3qced 224 8 from from IN cord-306414-2dv3qced 224 9 COVID-19 covid-19 JJ cord-306414-2dv3qced 224 10 infected infected JJ cord-306414-2dv3qced 224 11 and and CC cord-306414-2dv3qced 224 12 healthy healthy JJ cord-306414-2dv3qced 224 13 uninfected uninfected JJ cord-306414-2dv3qced 224 14 individuals individual NNS cord-306414-2dv3qced 224 15 will will MD cord-306414-2dv3qced 224 16 be be VB cord-306414-2dv3qced 224 17 the the DT cord-306414-2dv3qced 224 18 input input NN cord-306414-2dv3qced 224 19 for for IN cord-306414-2dv3qced 224 20 the the DT cord-306414-2dv3qced 224 21 TCR TCR NNP cord-306414-2dv3qced 224 22 repertoire repertoire NN cord-306414-2dv3qced 224 23 analyses analysis NNS cord-306414-2dv3qced 224 24 . . . cord-306414-2dv3qced 225 1 Sequences sequence NNS cord-306414-2dv3qced 225 2 and and CC cord-306414-2dv3qced 225 3 motif motif NN cord-306414-2dv3qced 225 4 analyses analysis NNS cord-306414-2dv3qced 225 5 will will MD cord-306414-2dv3qced 225 6 identify identify VB cord-306414-2dv3qced 225 7 shared share VBN cord-306414-2dv3qced 225 8 TCR TCR NNP cord-306414-2dv3qced 225 9 clones clone NNS cord-306414-2dv3qced 225 10 that that WDT cord-306414-2dv3qced 225 11 are be VBP cord-306414-2dv3qced 225 12 unique unique JJ cord-306414-2dv3qced 225 13 to to IN cord-306414-2dv3qced 225 14 severe severe JJ cord-306414-2dv3qced 225 15 acute acute JJ cord-306414-2dv3qced 225 16 respiratory respiratory JJ cord-306414-2dv3qced 225 17 syndrome syndrome NN cord-306414-2dv3qced 225 18 coronavirus coronavirus NN cord-306414-2dv3qced 225 19 2 2 CD cord-306414-2dv3qced 225 20 ( ( -LRB- cord-306414-2dv3qced 225 21 SARS SARS NNP cord-306414-2dv3qced 225 22 - - HYPH cord-306414-2dv3qced 225 23 CoV-2 CoV-2 NNP cord-306414-2dv3qced 225 24 ) ) -RRB- cord-306414-2dv3qced 225 25 epitopes epitope NNS cord-306414-2dv3qced 225 26 . . . cord-306414-2dv3qced 226 1 ( ( -LRB- cord-306414-2dv3qced 226 2 B b NN cord-306414-2dv3qced 226 3 ) ) -RRB- cord-306414-2dv3qced 226 4 Prediction prediction NN cord-306414-2dv3qced 226 5 algorithm algorithm NN cord-306414-2dv3qced 226 6 generated generate VBN cord-306414-2dv3qced 226 7 in in IN cord-306414-2dv3qced 226 8 ( ( -LRB- cord-306414-2dv3qced 226 9 A a NN cord-306414-2dv3qced 226 10 ) ) -RRB- cord-306414-2dv3qced 226 11 should should MD cord-306414-2dv3qced 226 12 enable enable VB cord-306414-2dv3qced 226 13 the the DT cord-306414-2dv3qced 226 14 use use NN cord-306414-2dv3qced 226 15 of of IN cord-306414-2dv3qced 226 16 TCR TCR NNP cord-306414-2dv3qced 226 17 sequencing sequencing NN cord-306414-2dv3qced 226 18 analysis analysis NN cord-306414-2dv3qced 226 19 of of IN cord-306414-2dv3qced 226 20 patient patient NN cord-306414-2dv3qced 226 21 with with IN cord-306414-2dv3qced 226 22 unknown unknown JJ cord-306414-2dv3qced 226 23 infection infection NN cord-306414-2dv3qced 226 24 status status NN cord-306414-2dv3qced 226 25 to to TO cord-306414-2dv3qced 226 26 determine determine VB cord-306414-2dv3qced 226 27 SARS SARS NNP cord-306414-2dv3qced 226 28 - - HYPH cord-306414-2dv3qced 226 29 CoV-2 CoV-2 NNP cord-306414-2dv3qced 226 30 exposure exposure NN cord-306414-2dv3qced 226 31 history history NN cord-306414-2dv3qced 226 32 in in IN cord-306414-2dv3qced 226 33 an an DT cord-306414-2dv3qced 226 34 individual individual NN cord-306414-2dv3qced 226 35 . . . cord-306414-2dv3qced 227 1 This this DT cord-306414-2dv3qced 227 2 information information NN cord-306414-2dv3qced 227 3 can can MD cord-306414-2dv3qced 227 4 be be VB cord-306414-2dv3qced 227 5 valuable valuable JJ cord-306414-2dv3qced 227 6 in in IN cord-306414-2dv3qced 227 7 the the DT cord-306414-2dv3qced 227 8 fight fight NN cord-306414-2dv3qced 227 9 against against IN cord-306414-2dv3qced 227 10 COVID-19 COVID-19 NNP cord-306414-2dv3qced 227 11 as as IN cord-306414-2dv3qced 227 12 it -PRON- PRP cord-306414-2dv3qced 227 13 can can MD cord-306414-2dv3qced 227 14 be be VB cord-306414-2dv3qced 227 15 applied apply VBN cord-306414-2dv3qced 227 16 to to TO cord-306414-2dv3qced 227 17 observe observe VB cord-306414-2dv3qced 227 18 the the DT cord-306414-2dv3qced 227 19 degree degree NN cord-306414-2dv3qced 227 20 of of IN cord-306414-2dv3qced 227 21 herd herd NN cord-306414-2dv3qced 227 22 immunity immunity NN cord-306414-2dv3qced 227 23 in in IN cord-306414-2dv3qced 227 24 a a DT cord-306414-2dv3qced 227 25 particular particular JJ cord-306414-2dv3qced 227 26 population population NN cord-306414-2dv3qced 227 27 . . . cord-306414-2dv3qced 228 1 PCR- PCR- NNP cord-306414-2dv3qced 228 2 , , , cord-306414-2dv3qced 228 3 target target VB cord-306414-2dv3qced 228 4 enrichment- enrichment- NN cord-306414-2dv3qced 228 5 , , , cord-306414-2dv3qced 228 6 and and CC cord-306414-2dv3qced 228 7 5′-RACE 5′-race CD cord-306414-2dv3qced 229 1 ( ( -LRB- cord-306414-2dv3qced 229 2 RNA RNA NNP cord-306414-2dv3qced 229 3 only)-based only)-base VBN cord-306414-2dv3qced 229 4 approaches approach NNS cord-306414-2dv3qced 229 5 are be VBP cord-306414-2dv3qced 229 6 the the DT cord-306414-2dv3qced 229 7 most most RBS cord-306414-2dv3qced 229 8 widely widely RB cord-306414-2dv3qced 229 9 used use VBN cord-306414-2dv3qced 229 10 TCR TCR NNP cord-306414-2dv3qced 229 11 - - HYPH cord-306414-2dv3qced 229 12 seq seq NNP cord-306414-2dv3qced 229 13 strategies strategy NNS cord-306414-2dv3qced 229 14 [ [ -LRB- cord-306414-2dv3qced 229 15 71 71 CD cord-306414-2dv3qced 229 16 ] ] -RRB- cord-306414-2dv3qced 229 17 . . . cord-306414-2dv3qced 230 1 Multiplex Multiplex NNP cord-306414-2dv3qced 230 2 PCR pcr NN cord-306414-2dv3qced 230 3 - - HYPH cord-306414-2dv3qced 230 4 based base VBN cord-306414-2dv3qced 230 5 methods method NNS cord-306414-2dv3qced 230 6 involve involve VBP cord-306414-2dv3qced 230 7 the the DT cord-306414-2dv3qced 230 8 use use NN cord-306414-2dv3qced 230 9 of of IN cord-306414-2dv3qced 230 10 a a DT cord-306414-2dv3qced 230 11 primer primer NN cord-306414-2dv3qced 230 12 mix mix NN cord-306414-2dv3qced 230 13 that that WDT cord-306414-2dv3qced 230 14 anneals anneal VBZ cord-306414-2dv3qced 230 15 to to IN cord-306414-2dv3qced 230 16 every every DT cord-306414-2dv3qced 230 17 V V NNP cord-306414-2dv3qced 230 18 and and CC cord-306414-2dv3qced 230 19 J J NNP cord-306414-2dv3qced 230 20 exon exon NNP cord-306414-2dv3qced 230 21 and and CC cord-306414-2dv3qced 230 22 the the DT cord-306414-2dv3qced 230 23 constant constant JJ cord-306414-2dv3qced 230 24 region region NN cord-306414-2dv3qced 230 25 . . . cord-306414-2dv3qced 231 1 However however RB cord-306414-2dv3qced 231 2 , , , cord-306414-2dv3qced 231 3 preferential preferential JJ cord-306414-2dv3qced 231 4 amplification amplification NN cord-306414-2dv3qced 231 5 of of IN cord-306414-2dv3qced 231 6 highly highly RB cord-306414-2dv3qced 231 7 abundant abundant JJ cord-306414-2dv3qced 231 8 gene gene NN cord-306414-2dv3qced 231 9 products product NNS cord-306414-2dv3qced 231 10 can can MD cord-306414-2dv3qced 231 11 occur occur VB cord-306414-2dv3qced 231 12 when when WRB cord-306414-2dv3qced 231 13 using use VBG cord-306414-2dv3qced 231 14 multiplex multiplex NN cord-306414-2dv3qced 231 15 PCR PCR NNP cord-306414-2dv3qced 231 16 , , , cord-306414-2dv3qced 231 17 contributing contribute VBG cord-306414-2dv3qced 231 18 to to IN cord-306414-2dv3qced 231 19 inaccuracies inaccuracy NNS cord-306414-2dv3qced 231 20 in in IN cord-306414-2dv3qced 231 21 reported report VBN cord-306414-2dv3qced 231 22 clone clone NN cord-306414-2dv3qced 231 23 frequencies frequency NNS cord-306414-2dv3qced 231 24 . . . cord-306414-2dv3qced 232 1 Additionally additionally RB cord-306414-2dv3qced 232 2 , , , cord-306414-2dv3qced 232 3 intronic intronic JJ cord-306414-2dv3qced 232 4 sequences sequence NNS cord-306414-2dv3qced 232 5 and and CC cord-306414-2dv3qced 232 6 incomplete incomplete JJ cord-306414-2dv3qced 232 7 VDJ VDJ NNP cord-306414-2dv3qced 232 8 recombination recombination NN cord-306414-2dv3qced 232 9 products product NNS cord-306414-2dv3qced 232 10 may may MD cord-306414-2dv3qced 232 11 contribute contribute VB cord-306414-2dv3qced 232 12 to to IN cord-306414-2dv3qced 232 13 data data NN cord-306414-2dv3qced 232 14 noise noise NN cord-306414-2dv3qced 232 15 when when WRB cord-306414-2dv3qced 232 16 using use VBG cord-306414-2dv3qced 232 17 gDNA gdna NN cord-306414-2dv3qced 232 18 samples sample NNS cord-306414-2dv3qced 232 19 . . . cord-306414-2dv3qced 233 1 Target target VB cord-306414-2dv3qced 233 2 enrichment enrichment NN cord-306414-2dv3qced 233 3 strategies strategy NNS cord-306414-2dv3qced 233 4 utilize utilize VBP cord-306414-2dv3qced 233 5 probes probe NNS cord-306414-2dv3qced 233 6 to to TO cord-306414-2dv3qced 233 7 capture capture VB cord-306414-2dv3qced 233 8 TCR TCR NNP cord-306414-2dv3qced 233 9 gDNA gDNA NNP cord-306414-2dv3qced 233 10 / / SYM cord-306414-2dv3qced 233 11 RNA RNA NNP cord-306414-2dv3qced 233 12 sequences sequence NNS cord-306414-2dv3qced 233 13 after after IN cord-306414-2dv3qced 233 14 initial initial JJ cord-306414-2dv3qced 233 15 library library NN cord-306414-2dv3qced 233 16 preparation preparation NN cord-306414-2dv3qced 233 17 using use VBG cord-306414-2dv3qced 233 18 compatible compatible JJ cord-306414-2dv3qced 233 19 kits kit NNS cord-306414-2dv3qced 233 20 ( ( -LRB- cord-306414-2dv3qced 233 21 such such JJ cord-306414-2dv3qced 233 22 as as IN cord-306414-2dv3qced 233 23 the the DT cord-306414-2dv3qced 233 24 Illumina Illumina NNP cord-306414-2dv3qced 233 25 TruSeq TruSeq NNP cord-306414-2dv3qced 233 26 kit kit NN cord-306414-2dv3qced 233 27 or or CC cord-306414-2dv3qced 233 28 the the DT cord-306414-2dv3qced 233 29 Agilent Agilent NNP cord-306414-2dv3qced 233 30 SureSelectXT SureSelectXT NNP cord-306414-2dv3qced 233 31 kit kit NN cord-306414-2dv3qced 233 32 ) ) -RRB- cord-306414-2dv3qced 233 33 followed follow VBN cord-306414-2dv3qced 233 34 by by IN cord-306414-2dv3qced 233 35 relatively relatively RB cord-306414-2dv3qced 233 36 few few JJ cord-306414-2dv3qced 233 37 cycles cycle NNS cord-306414-2dv3qced 233 38 of of IN cord-306414-2dv3qced 233 39 multiplex multiplex JJ cord-306414-2dv3qced 233 40 PCR pcr NN cord-306414-2dv3qced 233 41 amplification amplification NN cord-306414-2dv3qced 233 42 [ [ -LRB- cord-306414-2dv3qced 233 43 72 72 CD cord-306414-2dv3qced 233 44 , , , cord-306414-2dv3qced 233 45 73 73 CD cord-306414-2dv3qced 233 46 ] ] -RRB- cord-306414-2dv3qced 233 47 . . . cord-306414-2dv3qced 234 1 This this DT cord-306414-2dv3qced 234 2 method method NN cord-306414-2dv3qced 234 3 reduces reduce VBZ cord-306414-2dv3qced 234 4 the the DT cord-306414-2dv3qced 234 5 extent extent NN cord-306414-2dv3qced 234 6 of of IN cord-306414-2dv3qced 234 7 amplification amplification NN cord-306414-2dv3qced 234 8 bias bias NN cord-306414-2dv3qced 234 9 seen see VBN cord-306414-2dv3qced 234 10 in in IN cord-306414-2dv3qced 234 11 standard standard JJ cord-306414-2dv3qced 234 12 multiplex multiplex NN cord-306414-2dv3qced 234 13 PCR pcr NN cord-306414-2dv3qced 234 14 but but CC cord-306414-2dv3qced 234 15 is be VBZ cord-306414-2dv3qced 234 16 more more JJR cord-306414-2dv3qced 234 17 labor labor NN cord-306414-2dv3qced 234 18 / / SYM cord-306414-2dv3qced 234 19 time time NN cord-306414-2dv3qced 234 20 intensive intensive JJ cord-306414-2dv3qced 234 21 and and CC cord-306414-2dv3qced 234 22 does do VBZ cord-306414-2dv3qced 234 23 not not RB cord-306414-2dv3qced 234 24 resolve resolve VB cord-306414-2dv3qced 234 25 the the DT cord-306414-2dv3qced 234 26 issues issue NNS cord-306414-2dv3qced 234 27 associated associate VBN cord-306414-2dv3qced 234 28 with with IN cord-306414-2dv3qced 234 29 gDNA gdna JJ cord-306414-2dv3qced 234 30 input input NN cord-306414-2dv3qced 234 31 . . . cord-306414-2dv3qced 235 1 The the DT cord-306414-2dv3qced 235 2 5′-RACE 5′-race CD cord-306414-2dv3qced 235 3 method method NN cord-306414-2dv3qced 235 4 with with IN cord-306414-2dv3qced 235 5 an an DT cord-306414-2dv3qced 235 6 RNA RNA NNP cord-306414-2dv3qced 235 7 input input NN cord-306414-2dv3qced 235 8 involves involve VBZ cord-306414-2dv3qced 235 9 the the DT cord-306414-2dv3qced 235 10 reverse reverse JJ cord-306414-2dv3qced 235 11 transcription transcription NN cord-306414-2dv3qced 235 12 of of IN cord-306414-2dv3qced 235 13 TCR TCR NNP cord-306414-2dv3qced 235 14 transcripts transcript NNS cord-306414-2dv3qced 235 15 followed follow VBN cord-306414-2dv3qced 235 16 by by IN cord-306414-2dv3qced 235 17 the the DT cord-306414-2dv3qced 235 18 addition addition NN cord-306414-2dv3qced 235 19 of of IN cord-306414-2dv3qced 235 20 a a DT cord-306414-2dv3qced 235 21 known know VBN cord-306414-2dv3qced 235 22 sequence sequence NN cord-306414-2dv3qced 235 23 at at IN cord-306414-2dv3qced 235 24 the the DT cord-306414-2dv3qced 235 25 5′ 5′ CD cord-306414-2dv3qced 235 26 end end NN cord-306414-2dv3qced 235 27 of of IN cord-306414-2dv3qced 235 28 each each DT cord-306414-2dv3qced 235 29 cDNA cdna NN cord-306414-2dv3qced 235 30 molecule molecule NN cord-306414-2dv3qced 235 31 . . . cord-306414-2dv3qced 236 1 This this DT cord-306414-2dv3qced 236 2 5′ 5′ CD cord-306414-2dv3qced 236 3 sequence sequence NN cord-306414-2dv3qced 236 4 is be VBZ cord-306414-2dv3qced 236 5 leveraged leverage VBN cord-306414-2dv3qced 236 6 along along IN cord-306414-2dv3qced 236 7 with with IN cord-306414-2dv3qced 236 8 the the DT cord-306414-2dv3qced 236 9 highly highly RB cord-306414-2dv3qced 236 10 conserved conserve VBN cord-306414-2dv3qced 236 11 TCR TCR NNP cord-306414-2dv3qced 236 12 α α NNP cord-306414-2dv3qced 236 13 and and CC cord-306414-2dv3qced 236 14 β β NN cord-306414-2dv3qced 236 15 constant constant JJ cord-306414-2dv3qced 236 16 region region NN cord-306414-2dv3qced 236 17 during during IN cord-306414-2dv3qced 236 18 nested nest VBN cord-306414-2dv3qced 236 19 PCR PCR NNP cord-306414-2dv3qced 236 20 ( ( -LRB- cord-306414-2dv3qced 236 21 separate separate JJ cord-306414-2dv3qced 236 22 primers primer NNS cord-306414-2dv3qced 236 23 needed need VBD cord-306414-2dv3qced 236 24 to to TO cord-306414-2dv3qced 236 25 amplify amplify VB cord-306414-2dv3qced 236 26 either either CC cord-306414-2dv3qced 236 27 α α NN cord-306414-2dv3qced 236 28 or or CC cord-306414-2dv3qced 236 29 β β NN cord-306414-2dv3qced 236 30 transcripts transcript NNS cord-306414-2dv3qced 236 31 ) ) -RRB- cord-306414-2dv3qced 236 32 to to TO cord-306414-2dv3qced 236 33 achieve achieve VB cord-306414-2dv3qced 236 34 equally equally RB cord-306414-2dv3qced 236 35 efficient efficient JJ cord-306414-2dv3qced 236 36 amplification amplification NN cord-306414-2dv3qced 236 37 of of IN cord-306414-2dv3qced 236 38 used use VBN cord-306414-2dv3qced 236 39 as as IN cord-306414-2dv3qced 236 40 an an DT cord-306414-2dv3qced 236 41 input input NN cord-306414-2dv3qced 236 42 for for IN cord-306414-2dv3qced 236 43 TCR TCR NNP cord-306414-2dv3qced 236 44 sequencing sequencing NN cord-306414-2dv3qced 236 45 library library NN cord-306414-2dv3qced 236 46 preparation preparation NN cord-306414-2dv3qced 236 47 . . . cord-306414-2dv3qced 237 1 ( ( -LRB- cord-306414-2dv3qced 237 2 C C NNP cord-306414-2dv3qced 237 3 ) ) -RRB- cord-306414-2dv3qced 238 1 TCR TCR NNP cord-306414-2dv3qced 238 2 sequencing sequencing NN cord-306414-2dv3qced 238 3 will will MD cord-306414-2dv3qced 238 4 be be VB cord-306414-2dv3qced 238 5 done do VBN cord-306414-2dv3qced 238 6 using use VBG cord-306414-2dv3qced 238 7 Illumina Illumina NNP cord-306414-2dv3qced 238 8 or or CC cord-306414-2dv3qced 238 9 other other JJ cord-306414-2dv3qced 238 10 sequencing sequencing NN cord-306414-2dv3qced 238 11 platforms platform NNS cord-306414-2dv3qced 238 12 and and CC cord-306414-2dv3qced 238 13 resulting result VBG cord-306414-2dv3qced 238 14 data datum NNS cord-306414-2dv3qced 238 15 analyzed analyze VBD cord-306414-2dv3qced 238 16 using use VBG cord-306414-2dv3qced 238 17 popular popular JJ cord-306414-2dv3qced 238 18 bioinformatic bioinformatic JJ cord-306414-2dv3qced 238 19 tools tool NNS cord-306414-2dv3qced 238 20 to to TO cord-306414-2dv3qced 238 21 characterize characterize VB cord-306414-2dv3qced 238 22 the the DT cord-306414-2dv3qced 238 23 TCR TCR NNP cord-306414-2dv3qced 238 24 repertoire repertoire NN cord-306414-2dv3qced 238 25 of of IN cord-306414-2dv3qced 238 26 SARS SARS NNP cord-306414-2dv3qced 238 27 - - HYPH cord-306414-2dv3qced 238 28 CoV-2 CoV-2 NNP cord-306414-2dv3qced 238 29 infected infect VBD cord-306414-2dv3qced 238 30 / / SYM cord-306414-2dv3qced 238 31 vaccinated vaccinate VBN cord-306414-2dv3qced 238 32 individuals individual NNS cord-306414-2dv3qced 238 33 . . . cord-306414-2dv3qced 239 1 ( ( -LRB- cord-306414-2dv3qced 239 2 D d NN cord-306414-2dv3qced 239 3 ) ) -RRB- cord-306414-2dv3qced 240 1 The the DT cord-306414-2dv3qced 240 2 information information NN cord-306414-2dv3qced 240 3 obtained obtain VBN cord-306414-2dv3qced 240 4 can can MD cord-306414-2dv3qced 240 5 be be VB cord-306414-2dv3qced 240 6 used use VBN cord-306414-2dv3qced 240 7 to to TO cord-306414-2dv3qced 240 8 advance advance VB cord-306414-2dv3qced 240 9 immunotherapy immunotherapy NN cord-306414-2dv3qced 240 10 development development NN cord-306414-2dv3qced 240 11 , , , cord-306414-2dv3qced 240 12 characterize characterize VB cord-306414-2dv3qced 240 13 TCR TCR NNP cord-306414-2dv3qced 240 14 repertoires repertoire NNS cord-306414-2dv3qced 240 15 in in IN cord-306414-2dv3qced 240 16 specific specific JJ cord-306414-2dv3qced 240 17 populations population NNS cord-306414-2dv3qced 240 18 , , , cord-306414-2dv3qced 240 19 and and CC cord-306414-2dv3qced 240 20 monitor monitor VB cord-306414-2dv3qced 240 21 herd herd NN cord-306414-2dv3qced 240 22 immunity immunity NN cord-306414-2dv3qced 240 23 . . . cord-306414-2dv3qced 241 1 all all DT cord-306414-2dv3qced 241 2 TCR TCR NNP cord-306414-2dv3qced 241 3 transcripts transcript NNS cord-306414-2dv3qced 241 4 , , , cord-306414-2dv3qced 241 5 regardless regardless RB cord-306414-2dv3qced 241 6 of of IN cord-306414-2dv3qced 241 7 abundance abundance NN cord-306414-2dv3qced 241 8 [ [ -LRB- cord-306414-2dv3qced 241 9 74 74 CD cord-306414-2dv3qced 241 10 , , , cord-306414-2dv3qced 241 11 75 75 CD cord-306414-2dv3qced 241 12 ] ] -RRB- cord-306414-2dv3qced 241 13 . . . cord-306414-2dv3qced 242 1 While while IN cord-306414-2dv3qced 242 2 the the DT cord-306414-2dv3qced 242 3 5′-RACE 5′-RACE NNP cord-306414-2dv3qced 242 4 approach approach NN cord-306414-2dv3qced 242 5 avoids avoid VBZ cord-306414-2dv3qced 242 6 the the DT cord-306414-2dv3qced 242 7 PCR PCR NNP cord-306414-2dv3qced 242 8 bias bias NN cord-306414-2dv3qced 242 9 seen see VBN cord-306414-2dv3qced 242 10 in in IN cord-306414-2dv3qced 242 11 the the DT cord-306414-2dv3qced 242 12 other other JJ cord-306414-2dv3qced 242 13 two two CD cord-306414-2dv3qced 242 14 methods method NNS cord-306414-2dv3qced 242 15 , , , cord-306414-2dv3qced 242 16 it -PRON- PRP cord-306414-2dv3qced 242 17 requires require VBZ cord-306414-2dv3qced 242 18 the the DT cord-306414-2dv3qced 242 19 use use NN cord-306414-2dv3qced 242 20 of of IN cord-306414-2dv3qced 242 21 sequencing sequencing NN cord-306414-2dv3qced 242 22 platforms platform NNS cord-306414-2dv3qced 242 23 capable capable JJ cord-306414-2dv3qced 242 24 of of IN cord-306414-2dv3qced 242 25 long long JJ cord-306414-2dv3qced 242 26 reads read NNS cord-306414-2dv3qced 242 27 , , , cord-306414-2dv3qced 242 28 such such JJ cord-306414-2dv3qced 242 29 as as IN cord-306414-2dv3qced 242 30 the the DT cord-306414-2dv3qced 242 31 Illumina Illumina NNP cord-306414-2dv3qced 242 32 Miseq Miseq NNP cord-306414-2dv3qced 242 33 , , , cord-306414-2dv3qced 242 34 as as IN cord-306414-2dv3qced 242 35 fragment fragment NN cord-306414-2dv3qced 242 36 sizes size NNS cord-306414-2dv3qced 242 37 can can MD cord-306414-2dv3qced 242 38 exceed exceed VB cord-306414-2dv3qced 242 39 600 600 CD cord-306414-2dv3qced 242 40 bp bp NNP cord-306414-2dv3qced 242 41 . . . cord-306414-2dv3qced 243 1 While while IN cord-306414-2dv3qced 243 2 bulk bulk JJ cord-306414-2dv3qced 243 3 TCR TCR NNP cord-306414-2dv3qced 243 4 - - HYPH cord-306414-2dv3qced 243 5 seq seq NNP cord-306414-2dv3qced 243 6 ( ( -LRB- cord-306414-2dv3qced 243 7 TCR TCR NNP cord-306414-2dv3qced 243 8 - - HYPH cord-306414-2dv3qced 243 9 seq seq NNP cord-306414-2dv3qced 243 10 of of IN cord-306414-2dv3qced 243 11 a a DT cord-306414-2dv3qced 243 12 heterogeneous heterogeneous JJ cord-306414-2dv3qced 243 13 T t NN cord-306414-2dv3qced 243 14 cell cell NN cord-306414-2dv3qced 243 15 population population NN cord-306414-2dv3qced 243 16 ) ) -RRB- cord-306414-2dv3qced 243 17 via via IN cord-306414-2dv3qced 243 18 the the DT cord-306414-2dv3qced 243 19 earlier early RBR cord-306414-2dv3qced 243 20 - - HYPH cord-306414-2dv3qced 243 21 discussed discuss VBN cord-306414-2dv3qced 243 22 strategies strategy NNS cord-306414-2dv3qced 243 23 can can MD cord-306414-2dv3qced 243 24 provide provide VB cord-306414-2dv3qced 243 25 information information NN cord-306414-2dv3qced 243 26 about about IN cord-306414-2dv3qced 243 27 the the DT cord-306414-2dv3qced 243 28 evolution evolution NN cord-306414-2dv3qced 243 29 , , , cord-306414-2dv3qced 243 30 the the DT cord-306414-2dv3qced 243 31 dynamic dynamic JJ cord-306414-2dv3qced 243 32 , , , cord-306414-2dv3qced 243 33 and and CC cord-306414-2dv3qced 243 34 the the DT cord-306414-2dv3qced 243 35 architecture architecture NN cord-306414-2dv3qced 243 36 of of IN cord-306414-2dv3qced 243 37 the the DT cord-306414-2dv3qced 243 38 TCR TCR NNP cord-306414-2dv3qced 243 39 repertoire repertoire NN cord-306414-2dv3qced 243 40 during during IN cord-306414-2dv3qced 243 41 the the DT cord-306414-2dv3qced 243 42 course course NN cord-306414-2dv3qced 243 43 of of IN cord-306414-2dv3qced 243 44 SARS SARS NNP cord-306414-2dv3qced 243 45 - - HYPH cord-306414-2dv3qced 243 46 CoV-2 CoV-2 NNP cord-306414-2dv3qced 243 47 infections infection NNS cord-306414-2dv3qced 243 48 , , , cord-306414-2dv3qced 243 49 it -PRON- PRP cord-306414-2dv3qced 243 50 can can MD cord-306414-2dv3qced 243 51 not not RB cord-306414-2dv3qced 243 52 be be VB cord-306414-2dv3qced 243 53 used use VBN cord-306414-2dv3qced 243 54 to to TO cord-306414-2dv3qced 243 55 identify identify VB cord-306414-2dv3qced 243 56 the the DT cord-306414-2dv3qced 243 57 exact exact JJ cord-306414-2dv3qced 243 58 TCR TCR NNP cord-306414-2dv3qced 243 59 α α NNP cord-306414-2dv3qced 243 60 / / SYM cord-306414-2dv3qced 243 61 β β NN cord-306414-2dv3qced 243 62 pairs pair NNS cord-306414-2dv3qced 243 63 that that WDT cord-306414-2dv3qced 243 64 participate participate VBP cord-306414-2dv3qced 243 65 in in IN cord-306414-2dv3qced 243 66 antiviral antiviral JJ cord-306414-2dv3qced 243 67 responses response NNS cord-306414-2dv3qced 243 68 ( ( -LRB- cord-306414-2dv3qced 243 69 only only RB cord-306414-2dv3qced 243 70 draw draw VB cord-306414-2dv3qced 243 71 inferences inference NNS cord-306414-2dv3qced 243 72 based base VBN cord-306414-2dv3qced 243 73 on on IN cord-306414-2dv3qced 243 74 clone clone NN cord-306414-2dv3qced 243 75 frequency frequency NN cord-306414-2dv3qced 243 76 changes change NNS cord-306414-2dv3qced 243 77 ) ) -RRB- cord-306414-2dv3qced 243 78 [ [ -LRB- cord-306414-2dv3qced 243 79 52 52 CD cord-306414-2dv3qced 243 80 , , , cord-306414-2dv3qced 243 81 57 57 CD cord-306414-2dv3qced 243 82 ] ] -RRB- cord-306414-2dv3qced 243 83 . . . cord-306414-2dv3qced 244 1 Additionally additionally RB cord-306414-2dv3qced 244 2 , , , cord-306414-2dv3qced 244 3 bulk bulk JJ cord-306414-2dv3qced 244 4 TCR TCR NNP cord-306414-2dv3qced 244 5 - - HYPH cord-306414-2dv3qced 244 6 seq seq NNP cord-306414-2dv3qced 244 7 will will MD cord-306414-2dv3qced 244 8 likely likely RB cord-306414-2dv3qced 244 9 capture capture VB cord-306414-2dv3qced 244 10 bystander bystander NN cord-306414-2dv3qced 244 11 activated activate VBN cord-306414-2dv3qced 244 12 and and CC cord-306414-2dv3qced 244 13 expanded expand VBD cord-306414-2dv3qced 244 14 T t NN cord-306414-2dv3qced 244 15 cells cell NNS cord-306414-2dv3qced 244 16 , , , cord-306414-2dv3qced 244 17 contributing contribute VBG cord-306414-2dv3qced 244 18 to to IN cord-306414-2dv3qced 244 19 data data NN cord-306414-2dv3qced 244 20 noise noise NN cord-306414-2dv3qced 244 21 . . . cord-306414-2dv3qced 245 1 Single single JJ cord-306414-2dv3qced 245 2 - - HYPH cord-306414-2dv3qced 245 3 cell cell NN cord-306414-2dv3qced 245 4 TCR TCR NNP cord-306414-2dv3qced 245 5 - - HYPH cord-306414-2dv3qced 245 6 seq seq NNP cord-306414-2dv3qced 245 7 in in IN cord-306414-2dv3qced 245 8 tandem tandem NN cord-306414-2dv3qced 245 9 with with IN cord-306414-2dv3qced 245 10 singlecell singlecell JJ cord-306414-2dv3qced 245 11 flow flow NN cord-306414-2dv3qced 245 12 cytometry cytometry NN cord-306414-2dv3qced 245 13 sorting sorting NN cord-306414-2dv3qced 245 14 is be VBZ cord-306414-2dv3qced 245 15 an an DT cord-306414-2dv3qced 245 16 approach approach NN cord-306414-2dv3qced 245 17 to to TO cord-306414-2dv3qced 245 18 precisely precisely RB cord-306414-2dv3qced 245 19 identify identify VB cord-306414-2dv3qced 245 20 SARS SARS NNP cord-306414-2dv3qced 245 21 - - HYPH cord-306414-2dv3qced 245 22 CoV-2-specific CoV-2-specific NNP cord-306414-2dv3qced 245 23 T t NN cord-306414-2dv3qced 245 24 cells cell NNS cord-306414-2dv3qced 245 25 . . . cord-306414-2dv3qced 246 1 Single single JJ cord-306414-2dv3qced 246 2 - - HYPH cord-306414-2dv3qced 246 3 cell cell NN cord-306414-2dv3qced 246 4 TCR TCR NNP cord-306414-2dv3qced 246 5 analysis analysis NN cord-306414-2dv3qced 246 6 can can MD cord-306414-2dv3qced 246 7 be be VB cord-306414-2dv3qced 246 8 limited limit VBN cord-306414-2dv3qced 246 9 by by IN cord-306414-2dv3qced 246 10 their -PRON- PRP$ cord-306414-2dv3qced 246 11 depth depth NN cord-306414-2dv3qced 246 12 and and CC cord-306414-2dv3qced 246 13 their -PRON- PRP$ cord-306414-2dv3qced 246 14 ability ability NN cord-306414-2dv3qced 246 15 to to TO cord-306414-2dv3qced 246 16 capture capture VB cord-306414-2dv3qced 246 17 minor minor JJ cord-306414-2dv3qced 246 18 clones clone NNS cord-306414-2dv3qced 246 19 . . . cord-306414-2dv3qced 247 1 Regardless regardless RB cord-306414-2dv3qced 247 2 , , , cord-306414-2dv3qced 247 3 these these DT cord-306414-2dv3qced 247 4 approaches approach NNS cord-306414-2dv3qced 247 5 generate generate VBP cord-306414-2dv3qced 247 6 millions million NNS cord-306414-2dv3qced 247 7 of of IN cord-306414-2dv3qced 247 8 TCR TCR NNP cord-306414-2dv3qced 247 9 sequences sequence NNS cord-306414-2dv3qced 247 10 in in IN cord-306414-2dv3qced 247 11 one one CD cord-306414-2dv3qced 247 12 experiment experiment NN cord-306414-2dv3qced 247 13 and and CC cord-306414-2dv3qced 247 14 enable enable VB cord-306414-2dv3qced 247 15 the the DT cord-306414-2dv3qced 247 16 characterization characterization NN cord-306414-2dv3qced 247 17 of of IN cord-306414-2dv3qced 247 18 the the DT cord-306414-2dv3qced 247 19 TCR TCR NNP cord-306414-2dv3qced 247 20 repertoire repertoire NN cord-306414-2dv3qced 247 21 in in IN cord-306414-2dv3qced 247 22 COVID-19 COVID-19 NNP cord-306414-2dv3qced 247 23 patients patient NNS cord-306414-2dv3qced 247 24 [ [ -LRB- cord-306414-2dv3qced 247 25 73 73 CD cord-306414-2dv3qced 247 26 , , , cord-306414-2dv3qced 247 27 76 76 CD cord-306414-2dv3qced 247 28 ] ] -RRB- cord-306414-2dv3qced 247 29 . . . cord-306414-2dv3qced 248 1 Computational Computational NNP cord-306414-2dv3qced 248 2 Tools Tools NNPS cord-306414-2dv3qced 249 1 Bioinformatic bioinformatic JJ cord-306414-2dv3qced 249 2 tools tool NNS cord-306414-2dv3qced 249 3 have have VBP cord-306414-2dv3qced 249 4 been be VBN cord-306414-2dv3qced 249 5 developed develop VBN cord-306414-2dv3qced 249 6 to to TO cord-306414-2dv3qced 249 7 enable enable VB cord-306414-2dv3qced 249 8 streamlined streamline VBN cord-306414-2dv3qced 249 9 and and CC cord-306414-2dv3qced 249 10 standardized standardized JJ cord-306414-2dv3qced 249 11 TCR TCR NNP cord-306414-2dv3qced 249 12 - - HYPH cord-306414-2dv3qced 249 13 seq seq NNP cord-306414-2dv3qced 249 14 data data NN cord-306414-2dv3qced 249 15 analysis analysis NN cord-306414-2dv3qced 249 16 and and CC cord-306414-2dv3qced 249 17 have have VBP cord-306414-2dv3qced 249 18 been be VBN cord-306414-2dv3qced 249 19 used use VBN cord-306414-2dv3qced 249 20 by by IN cord-306414-2dv3qced 249 21 our -PRON- PRP$ cord-306414-2dv3qced 249 22 group group NN cord-306414-2dv3qced 249 23 and and CC cord-306414-2dv3qced 249 24 others other NNS cord-306414-2dv3qced 249 25 extensively extensively RB cord-306414-2dv3qced 249 26 . . . cord-306414-2dv3qced 250 1 MiXCR MiXCR NNP cord-306414-2dv3qced 251 1 i i PRP cord-306414-2dv3qced 251 2 is be VBZ cord-306414-2dv3qced 251 3 a a DT cord-306414-2dv3qced 251 4 UNIX UNIX NNP cord-306414-2dv3qced 251 5 - - HYPH cord-306414-2dv3qced 251 6 based base VBN cord-306414-2dv3qced 251 7 software software NN cord-306414-2dv3qced 251 8 used use VBN cord-306414-2dv3qced 251 9 to to TO cord-306414-2dv3qced 251 10 identify identify VB cord-306414-2dv3qced 251 11 and and CC cord-306414-2dv3qced 251 12 build build VB cord-306414-2dv3qced 251 13 TCR TCR NNP cord-306414-2dv3qced 251 14 sequences sequence NNS cord-306414-2dv3qced 251 15 using use VBG cord-306414-2dv3qced 251 16 raw raw JJ cord-306414-2dv3qced 251 17 sequencing sequencing NN cord-306414-2dv3qced 251 18 data datum NNS cord-306414-2dv3qced 251 19 [ [ -LRB- cord-306414-2dv3qced 251 20 77 77 CD cord-306414-2dv3qced 251 21 ] ] -RRB- cord-306414-2dv3qced 251 22 . . . cord-306414-2dv3qced 252 1 MiXCR MiXCR NNP cord-306414-2dv3qced 252 2 uses use VBZ cord-306414-2dv3qced 252 3 a a DT cord-306414-2dv3qced 252 4 built build VBN cord-306414-2dv3qced 252 5 - - HYPH cord-306414-2dv3qced 252 6 in in RP cord-306414-2dv3qced 252 7 aligner aligner NN cord-306414-2dv3qced 252 8 and and CC cord-306414-2dv3qced 252 9 reference reference NN cord-306414-2dv3qced 252 10 library library NN cord-306414-2dv3qced 252 11 of of IN cord-306414-2dv3qced 252 12 V V NNP cord-306414-2dv3qced 252 13 , , , cord-306414-2dv3qced 252 14 D D NNP cord-306414-2dv3qced 252 15 , , , cord-306414-2dv3qced 252 16 J J NNP cord-306414-2dv3qced 252 17 , , , cord-306414-2dv3qced 252 18 and and CC cord-306414-2dv3qced 252 19 C C NNP cord-306414-2dv3qced 252 20 segment segment NN cord-306414-2dv3qced 252 21 sequences sequence NNS cord-306414-2dv3qced 252 22 to to IN cord-306414-2dv3qced 252 23 efficiently efficiently RB cord-306414-2dv3qced 252 24 and and CC cord-306414-2dv3qced 252 25 accurately accurately RB cord-306414-2dv3qced 252 26 call call VB cord-306414-2dv3qced 252 27 V v NN cord-306414-2dv3qced 252 28 , , , cord-306414-2dv3qced 252 29 D D NNP cord-306414-2dv3qced 252 30 , , , cord-306414-2dv3qced 252 31 J J NNP cord-306414-2dv3qced 252 32 , , , cord-306414-2dv3qced 252 33 and and CC cord-306414-2dv3qced 252 34 C c NN cord-306414-2dv3qced 252 35 regions region NNS cord-306414-2dv3qced 252 36 from from IN cord-306414-2dv3qced 252 37 millions million NNS cord-306414-2dv3qced 252 38 of of IN cord-306414-2dv3qced 252 39 reads read NNS cord-306414-2dv3qced 252 40 and and CC cord-306414-2dv3qced 252 41 then then RB cord-306414-2dv3qced 252 42 groups group NNS cord-306414-2dv3qced 252 43 similar similar JJ cord-306414-2dv3qced 252 44 reads read VBZ cord-306414-2dv3qced 252 45 together together RB cord-306414-2dv3qced 252 46 to to TO cord-306414-2dv3qced 252 47 build build VB cord-306414-2dv3qced 252 48 a a DT cord-306414-2dv3qced 252 49 final final JJ cord-306414-2dv3qced 252 50 TCR TCR NNP cord-306414-2dv3qced 252 51 sequence sequence NN cord-306414-2dv3qced 252 52 . . . cord-306414-2dv3qced 253 1 The the DT cord-306414-2dv3qced 253 2 assembled assemble VBN cord-306414-2dv3qced 253 3 TCR TCR NNP cord-306414-2dv3qced 253 4 sequences sequence NNS cord-306414-2dv3qced 253 5 along along IN cord-306414-2dv3qced 253 6 with with IN cord-306414-2dv3qced 253 7 V v NN cord-306414-2dv3qced 253 8 , , , cord-306414-2dv3qced 253 9 D D NNP cord-306414-2dv3qced 253 10 , , , cord-306414-2dv3qced 253 11 and and CC cord-306414-2dv3qced 253 12 J J NNP cord-306414-2dv3qced 253 13 annotations annotation NNS cord-306414-2dv3qced 253 14 are be VBP cord-306414-2dv3qced 253 15 written write VBN cord-306414-2dv3qced 253 16 into into IN cord-306414-2dv3qced 253 17 a a DT cord-306414-2dv3qced 253 18 text text NN cord-306414-2dv3qced 253 19 - - HYPH cord-306414-2dv3qced 253 20 formatted format VBN cord-306414-2dv3qced 253 21 file file NN cord-306414-2dv3qced 253 22 that that WDT cord-306414-2dv3qced 253 23 can can MD cord-306414-2dv3qced 253 24 be be VB cord-306414-2dv3qced 253 25 used use VBN cord-306414-2dv3qced 253 26 by by IN cord-306414-2dv3qced 253 27 analysis analysis NN cord-306414-2dv3qced 253 28 tools tool NNS cord-306414-2dv3qced 253 29 such such JJ cord-306414-2dv3qced 253 30 as as IN cord-306414-2dv3qced 253 31 VDJTools VDJTools NNP cord-306414-2dv3qced 253 32 ii ii NNP cord-306414-2dv3qced 253 33 to to TO cord-306414-2dv3qced 253 34 characterize characterize VB cord-306414-2dv3qced 253 35 TCR TCR NNP cord-306414-2dv3qced 253 36 - - HYPH cord-306414-2dv3qced 253 37 seq seq NNP cord-306414-2dv3qced 253 38 data datum NNS cord-306414-2dv3qced 253 39 and and CC cord-306414-2dv3qced 253 40 identify identify VB cord-306414-2dv3qced 253 41 changes change NNS cord-306414-2dv3qced 253 42 in in IN cord-306414-2dv3qced 253 43 the the DT cord-306414-2dv3qced 253 44 TCR TCR NNP cord-306414-2dv3qced 253 45 repertoire repertoire NN cord-306414-2dv3qced 253 46 that that WDT cord-306414-2dv3qced 253 47 may may MD cord-306414-2dv3qced 253 48 occur occur VB cord-306414-2dv3qced 253 49 during during IN cord-306414-2dv3qced 253 50 disease disease NN cord-306414-2dv3qced 253 51 progression progression NN cord-306414-2dv3qced 253 52 in in IN cord-306414-2dv3qced 253 53 COVID-19 covid-19 JJ cord-306414-2dv3qced 253 54 patients patient NNS cord-306414-2dv3qced 253 55 [ [ -LRB- cord-306414-2dv3qced 253 56 78 78 CD cord-306414-2dv3qced 253 57 ] ] -RRB- cord-306414-2dv3qced 253 58 . . . cord-306414-2dv3qced 254 1 Recent recent JJ cord-306414-2dv3qced 254 2 advances advance NNS cord-306414-2dv3qced 254 3 in in IN cord-306414-2dv3qced 254 4 TCR TCR NNP cord-306414-2dv3qced 254 5 - - HYPH cord-306414-2dv3qced 254 6 seq seq NNP cord-306414-2dv3qced 254 7 have have VBP cord-306414-2dv3qced 254 8 provided provide VBN cord-306414-2dv3qced 254 9 evidence evidence NN cord-306414-2dv3qced 254 10 for for IN cord-306414-2dv3qced 254 11 a a DT cord-306414-2dv3qced 254 12 close close JJ cord-306414-2dv3qced 254 13 relationship relationship NN cord-306414-2dv3qced 254 14 between between IN cord-306414-2dv3qced 254 15 TCR TCR NNP cord-306414-2dv3qced 254 16 diversity diversity NN cord-306414-2dv3qced 254 17 and and CC cord-306414-2dv3qced 254 18 immune immune JJ cord-306414-2dv3qced 254 19 responses response NNS cord-306414-2dv3qced 254 20 against against IN cord-306414-2dv3qced 254 21 viral viral JJ cord-306414-2dv3qced 254 22 antigens antigen NNS cord-306414-2dv3qced 254 23 . . . cord-306414-2dv3qced 255 1 Under under IN cord-306414-2dv3qced 255 2 homeostatic homeostatic JJ cord-306414-2dv3qced 255 3 conditions condition NNS cord-306414-2dv3qced 255 4 , , , cord-306414-2dv3qced 255 5 the the DT cord-306414-2dv3qced 255 6 TCR TCR NNP cord-306414-2dv3qced 255 7 repertoire repertoire NN cord-306414-2dv3qced 255 8 is be VBZ cord-306414-2dv3qced 255 9 largely largely RB cord-306414-2dv3qced 255 10 diverse diverse JJ cord-306414-2dv3qced 255 11 and and CC cord-306414-2dv3qced 255 12 polyclonal polyclonal JJ cord-306414-2dv3qced 255 13 . . . cord-306414-2dv3qced 256 1 However however RB cord-306414-2dv3qced 256 2 , , , cord-306414-2dv3qced 256 3 in in IN cord-306414-2dv3qced 256 4 the the DT cord-306414-2dv3qced 256 5 context context NN cord-306414-2dv3qced 256 6 of of IN cord-306414-2dv3qced 256 7 viral viral JJ cord-306414-2dv3qced 256 8 infection infection NN cord-306414-2dv3qced 256 9 , , , cord-306414-2dv3qced 256 10 preferential preferential JJ cord-306414-2dv3qced 256 11 selection selection NN cord-306414-2dv3qced 256 12 of of IN cord-306414-2dv3qced 256 13 T T NNP cord-306414-2dv3qced 256 14 cell cell NN cord-306414-2dv3qced 256 15 clones clone NNS cord-306414-2dv3qced 256 16 can can MD cord-306414-2dv3qced 256 17 contribute contribute VB cord-306414-2dv3qced 256 18 to to IN cord-306414-2dv3qced 256 19 the the DT cord-306414-2dv3qced 256 20 narrowing narrowing NN cord-306414-2dv3qced 256 21 of of IN cord-306414-2dv3qced 256 22 an an DT cord-306414-2dv3qced 256 23 antigen antigen NN cord-306414-2dv3qced 256 24 - - HYPH cord-306414-2dv3qced 256 25 selected select VBN cord-306414-2dv3qced 256 26 TCR TCR NNP cord-306414-2dv3qced 256 27 repertoire repertoire NN cord-306414-2dv3qced 256 28 . . . cord-306414-2dv3qced 257 1 To to TO cord-306414-2dv3qced 257 2 what what WDT cord-306414-2dv3qced 257 3 extent extent NN cord-306414-2dv3qced 257 4 SARS SARS NNP cord-306414-2dv3qced 257 5 - - HYPH cord-306414-2dv3qced 257 6 CoV-2 CoV-2 NNP cord-306414-2dv3qced 257 7 influences influence VBZ cord-306414-2dv3qced 257 8 the the DT cord-306414-2dv3qced 257 9 TCR TCR NNP cord-306414-2dv3qced 257 10 repertoire repertoire NN cord-306414-2dv3qced 257 11 remains remain VBZ cord-306414-2dv3qced 257 12 to to TO cord-306414-2dv3qced 257 13 be be VB cord-306414-2dv3qced 257 14 assessed assess VBN cord-306414-2dv3qced 257 15 . . . cord-306414-2dv3qced 258 1 In in IN cord-306414-2dv3qced 258 2 addition addition NN cord-306414-2dv3qced 258 3 , , , cord-306414-2dv3qced 258 4 what what WDT cord-306414-2dv3qced 258 5 impact impact NN cord-306414-2dv3qced 259 1 the the DT cord-306414-2dv3qced 259 2 COVID-19 COVID-19 NNP cord-306414-2dv3qced 259 3 resulting result VBG cord-306414-2dv3qced 259 4 lymphocytopenia lymphocytopenia NNP cord-306414-2dv3qced 259 5 has have VBZ cord-306414-2dv3qced 259 6 on on IN cord-306414-2dv3qced 259 7 the the DT cord-306414-2dv3qced 259 8 TCR TCR NNP cord-306414-2dv3qced 259 9 repertoire repertoire NN cord-306414-2dv3qced 259 10 architecture architecture NN cord-306414-2dv3qced 259 11 , , , cord-306414-2dv3qced 259 12 diversity diversity NN cord-306414-2dv3qced 259 13 , , , cord-306414-2dv3qced 259 14 and and CC cord-306414-2dv3qced 259 15 composition composition NN cord-306414-2dv3qced 259 16 , , , cord-306414-2dv3qced 259 17 and and CC cord-306414-2dv3qced 259 18 how how WRB cord-306414-2dv3qced 259 19 comorbidities comorbiditie NNS cord-306414-2dv3qced 259 20 such such JJ cord-306414-2dv3qced 259 21 as as IN cord-306414-2dv3qced 259 22 diabetes diabetes NN cord-306414-2dv3qced 259 23 , , , cord-306414-2dv3qced 259 24 obesity obesity NN cord-306414-2dv3qced 259 25 , , , cord-306414-2dv3qced 259 26 and and CC cord-306414-2dv3qced 259 27 hypertension hypertension NN cord-306414-2dv3qced 259 28 which which WDT cord-306414-2dv3qced 259 29 are be VBP cord-306414-2dv3qced 259 30 implicated implicate VBN cord-306414-2dv3qced 259 31 in in IN cord-306414-2dv3qced 259 32 COVID-19 covid-19 JJ cord-306414-2dv3qced 259 33 severity severity NN cord-306414-2dv3qced 259 34 may may MD cord-306414-2dv3qced 259 35 influence influence VB cord-306414-2dv3qced 259 36 the the DT cord-306414-2dv3qced 259 37 TCR TCR NNP cord-306414-2dv3qced 259 38 repertoire repertoire NN cord-306414-2dv3qced 259 39 , , , cord-306414-2dv3qced 259 40 are be VBP cord-306414-2dv3qced 259 41 questions question NNS cord-306414-2dv3qced 259 42 that that WDT cord-306414-2dv3qced 259 43 warrant warrant VBP cord-306414-2dv3qced 259 44 attention attention NN cord-306414-2dv3qced 259 45 ( ( -LRB- cord-306414-2dv3qced 259 46 see see VB cord-306414-2dv3qced 259 47 Outstanding Outstanding NNP cord-306414-2dv3qced 259 48 Questions Questions NNPS cord-306414-2dv3qced 259 49 ) ) -RRB- cord-306414-2dv3qced 259 50 . . . cord-306414-2dv3qced 260 1 Studying study VBG cord-306414-2dv3qced 260 2 the the DT cord-306414-2dv3qced 260 3 TCR TCR NNP cord-306414-2dv3qced 260 4 repertoire repertoire NN cord-306414-2dv3qced 260 5 may may MD cord-306414-2dv3qced 260 6 also also RB cord-306414-2dv3qced 260 7 reveal reveal VB cord-306414-2dv3qced 260 8 potential potential JJ cord-306414-2dv3qced 260 9 public public JJ cord-306414-2dv3qced 260 10 TCRs tcr NNS cord-306414-2dv3qced 260 11 , , , cord-306414-2dv3qced 260 12 which which WDT cord-306414-2dv3qced 260 13 may may MD cord-306414-2dv3qced 260 14 allow allow VB cord-306414-2dv3qced 260 15 us -PRON- PRP cord-306414-2dv3qced 260 16 to to TO cord-306414-2dv3qced 260 17 track track VB cord-306414-2dv3qced 260 18 infection infection NN cord-306414-2dv3qced 260 19 as as RB cord-306414-2dv3qced 260 20 well well RB cord-306414-2dv3qced 260 21 as as IN cord-306414-2dv3qced 260 22 understand understand VB cord-306414-2dv3qced 260 23 immunity immunity NN cord-306414-2dv3qced 260 24 against against IN cord-306414-2dv3qced 260 25 this this DT cord-306414-2dv3qced 260 26 infection infection NN cord-306414-2dv3qced 260 27 . . . cord-306414-2dv3qced 261 1 In in IN cord-306414-2dv3qced 261 2 line line NN cord-306414-2dv3qced 261 3 with with IN cord-306414-2dv3qced 261 4 our -PRON- PRP$ cord-306414-2dv3qced 261 5 opinion opinion NN cord-306414-2dv3qced 261 6 , , , cord-306414-2dv3qced 261 7 several several JJ cord-306414-2dv3qced 261 8 efforts effort NNS cord-306414-2dv3qced 261 9 are be VBP cord-306414-2dv3qced 261 10 on on IN cord-306414-2dv3qced 261 11 the the DT cord-306414-2dv3qced 261 12 way way NN cord-306414-2dv3qced 261 13 to to TO cord-306414-2dv3qced 261 14 perform perform VB cord-306414-2dv3qced 261 15 TCR TCR NNP cord-306414-2dv3qced 261 16 analysis analysis NN cord-306414-2dv3qced 261 17 in in IN cord-306414-2dv3qced 261 18 COVID-19 COVID-19 NNP cord-306414-2dv3qced 261 19 patients patient NNS cord-306414-2dv3qced 261 20 . . . cord-306414-2dv3qced 262 1 A a DT cord-306414-2dv3qced 262 2 recent recent JJ cord-306414-2dv3qced 262 3 study study NN cord-306414-2dv3qced 262 4 has have VBZ cord-306414-2dv3qced 262 5 reported report VBN cord-306414-2dv3qced 262 6 a a DT cord-306414-2dv3qced 262 7 longitudinal longitudinal JJ cord-306414-2dv3qced 262 8 high high JJ cord-306414-2dv3qced 262 9 - - HYPH cord-306414-2dv3qced 262 10 throughput throughput NN cord-306414-2dv3qced 262 11 TCR TCR NNP cord-306414-2dv3qced 262 12 - - HYPH cord-306414-2dv3qced 262 13 seq seq NNP cord-306414-2dv3qced 262 14 to to TO cord-306414-2dv3qced 262 15 track track VB cord-306414-2dv3qced 262 16 changes change NNS cord-306414-2dv3qced 262 17 in in IN cord-306414-2dv3qced 262 18 the the DT cord-306414-2dv3qced 262 19 T T NNP cord-306414-2dv3qced 262 20 cell cell NN cord-306414-2dv3qced 262 21 repertoire repertoire NN cord-306414-2dv3qced 262 22 following follow VBG cord-306414-2dv3qced 262 23 two two CD cord-306414-2dv3qced 262 24 mild mild JJ cord-306414-2dv3qced 262 25 cases case NNS cord-306414-2dv3qced 262 26 of of IN cord-306414-2dv3qced 262 27 COVID-19 covid-19 JJ cord-306414-2dv3qced 262 28 infection infection NN cord-306414-2dv3qced 262 29 [ [ -LRB- cord-306414-2dv3qced 262 30 79 79 CD cord-306414-2dv3qced 262 31 ] ] -RRB- cord-306414-2dv3qced 262 32 . . . cord-306414-2dv3qced 263 1 In in IN cord-306414-2dv3qced 263 2 addition addition NN cord-306414-2dv3qced 263 3 , , , cord-306414-2dv3qced 263 4 clinical clinical JJ cord-306414-2dv3qced 263 5 trials trial NNS cord-306414-2dv3qced 263 6 ( ( -LRB- cord-306414-2dv3qced 263 7 clinical clinical JJ cord-306414-2dv3qced 263 8 trial trial NN cord-306414-2dv3qced 263 9 numbers number NNS cord-306414-2dv3qced 263 10 iii iii NN cord-306414-2dv3qced 263 11 : : : cord-306414-2dv3qced 264 1 NCT04379466 NCT04379466 NNP cord-306414-2dv3qced 264 2 and and CC cord-306414-2dv3qced 264 3 NCT04362865 NCT04362865 NNP cord-306414-2dv3qced 264 4 ) ) -RRB- cord-306414-2dv3qced 264 5 have have VBP cord-306414-2dv3qced 264 6 been be VBN cord-306414-2dv3qced 264 7 initiated initiate VBN cord-306414-2dv3qced 264 8 to to TO cord-306414-2dv3qced 264 9 examine examine VB cord-306414-2dv3qced 264 10 the the DT cord-306414-2dv3qced 264 11 immune immune JJ cord-306414-2dv3qced 264 12 repertoire repertoire NN cord-306414-2dv3qced 264 13 in in IN cord-306414-2dv3qced 264 14 COVID-19 COVID-19 NNP cord-306414-2dv3qced 264 15 patients patient NNS cord-306414-2dv3qced 264 16 . . . cord-306414-2dv3qced 265 1 The the DT cord-306414-2dv3qced 265 2 NCT04362865 NCT04362865 NNP cord-306414-2dv3qced 265 3 trial trial NN cord-306414-2dv3qced 265 4 , , , cord-306414-2dv3qced 265 5 sponsored sponsor VBN cord-306414-2dv3qced 265 6 by by IN cord-306414-2dv3qced 265 7 the the DT cord-306414-2dv3qced 265 8 National National NNP cord-306414-2dv3qced 265 9 Institute Institute NNP cord-306414-2dv3qced 265 10 of of IN cord-306414-2dv3qced 265 11 Health Health NNP cord-306414-2dv3qced 265 12 , , , cord-306414-2dv3qced 265 13 is be VBZ cord-306414-2dv3qced 265 14 particularly particularly RB cord-306414-2dv3qced 265 15 interesting interesting JJ cord-306414-2dv3qced 265 16 as as IN cord-306414-2dv3qced 265 17 it -PRON- PRP cord-306414-2dv3qced 265 18 aims aim VBZ cord-306414-2dv3qced 265 19 to to TO cord-306414-2dv3qced 265 20 investigate investigate VB cord-306414-2dv3qced 265 21 both both CC cord-306414-2dv3qced 265 22 the the DT cord-306414-2dv3qced 265 23 B B NNP cord-306414-2dv3qced 265 24 and and CC cord-306414-2dv3qced 265 25 T T NNP cord-306414-2dv3qced 265 26 cell cell NN cord-306414-2dv3qced 265 27 repertoire repertoire NN cord-306414-2dv3qced 265 28 and and CC cord-306414-2dv3qced 265 29 immune immune JJ cord-306414-2dv3qced 265 30 response response NN cord-306414-2dv3qced 265 31 in in IN cord-306414-2dv3qced 265 32 patients patient NNS cord-306414-2dv3qced 265 33 with with IN cord-306414-2dv3qced 265 34 acute acute JJ cord-306414-2dv3qced 265 35 and and CC cord-306414-2dv3qced 265 36 resolved resolve VBD cord-306414-2dv3qced 265 37 COVID-19 covid-19 JJ cord-306414-2dv3qced 265 38 infection infection NN cord-306414-2dv3qced 265 39 . . . cord-306414-2dv3qced 266 1 We -PRON- PRP cord-306414-2dv3qced 266 2 should should MD cord-306414-2dv3qced 266 3 emphasize emphasize VB cord-306414-2dv3qced 266 4 that that IN cord-306414-2dv3qced 266 5 the the DT cord-306414-2dv3qced 266 6 B B NNP cord-306414-2dv3qced 266 7 cell cell NN cord-306414-2dv3qced 266 8 immunoglobulin immunoglobulin NN cord-306414-2dv3qced 266 9 repertoire repertoire NN cord-306414-2dv3qced 266 10 analysis analysis NN cord-306414-2dv3qced 266 11 is be VBZ cord-306414-2dv3qced 266 12 also also RB cord-306414-2dv3qced 266 13 a a DT cord-306414-2dv3qced 266 14 significant significant JJ cord-306414-2dv3qced 266 15 and and CC cord-306414-2dv3qced 266 16 an an DT cord-306414-2dv3qced 266 17 urgently urgently RB cord-306414-2dv3qced 266 18 needed need VBN cord-306414-2dv3qced 266 19 task task NN cord-306414-2dv3qced 266 20 . . . cord-306414-2dv3qced 267 1 Indeed indeed RB cord-306414-2dv3qced 267 2 , , , cord-306414-2dv3qced 267 3 a a DT cord-306414-2dv3qced 267 4 recent recent JJ cord-306414-2dv3qced 267 5 study study NN cord-306414-2dv3qced 267 6 has have VBZ cord-306414-2dv3qced 267 7 applied apply VBN cord-306414-2dv3qced 267 8 a a DT cord-306414-2dv3qced 267 9 single single JJ cord-306414-2dv3qced 267 10 - - HYPH cord-306414-2dv3qced 267 11 cell cell NN cord-306414-2dv3qced 267 12 immune immune JJ cord-306414-2dv3qced 267 13 profiling profiling NN cord-306414-2dv3qced 267 14 approach approach NN cord-306414-2dv3qced 267 15 that that WDT cord-306414-2dv3qced 267 16 combines combine VBZ cord-306414-2dv3qced 267 17 single single JJ cord-306414-2dv3qced 267 18 - - HYPH cord-306414-2dv3qced 267 19 cell cell NN cord-306414-2dv3qced 267 20 transcriptomic transcriptomic JJ cord-306414-2dv3qced 267 21 analysis analysis NN cord-306414-2dv3qced 267 22 with with IN cord-306414-2dv3qced 267 23 single single JJ cord-306414-2dv3qced 267 24 - - HYPH cord-306414-2dv3qced 267 25 cell cell NN cord-306414-2dv3qced 267 26 TCR TCR NNP cord-306414-2dv3qced 267 27 and and CC cord-306414-2dv3qced 267 28 B B NNP cord-306414-2dv3qced 267 29 cell cell NN cord-306414-2dv3qced 267 30 receptor receptor NN cord-306414-2dv3qced 267 31 ( ( -LRB- cord-306414-2dv3qced 267 32 BCR BCR NNP cord-306414-2dv3qced 267 33 ) ) -RRB- cord-306414-2dv3qced 267 34 sequencing sequencing NN cord-306414-2dv3qced 267 35 technologies technology NNS cord-306414-2dv3qced 267 36 to to TO cord-306414-2dv3qced 267 37 examine examine VB cord-306414-2dv3qced 267 38 the the DT cord-306414-2dv3qced 267 39 cellular cellular JJ cord-306414-2dv3qced 267 40 context context NN cord-306414-2dv3qced 267 41 of of IN cord-306414-2dv3qced 267 42 the the DT cord-306414-2dv3qced 267 43 adaptive adaptive JJ cord-306414-2dv3qced 267 44 immune immune JJ cord-306414-2dv3qced 267 45 response response NN cord-306414-2dv3qced 267 46 and and CC cord-306414-2dv3qced 267 47 immune immune JJ cord-306414-2dv3qced 267 48 repertoires repertoire NNS cord-306414-2dv3qced 267 49 of of IN cord-306414-2dv3qced 267 50 T t NN cord-306414-2dv3qced 267 51 and and CC cord-306414-2dv3qced 267 52 B b NN cord-306414-2dv3qced 267 53 cells cell NNS cord-306414-2dv3qced 267 54 in in IN cord-306414-2dv3qced 267 55 blood blood NN cord-306414-2dv3qced 267 56 samples sample NNS cord-306414-2dv3qced 267 57 of of IN cord-306414-2dv3qced 267 58 How how WRB cord-306414-2dv3qced 267 59 does do VBZ cord-306414-2dv3qced 267 60 SARS SARS NNP cord-306414-2dv3qced 267 61 - - HYPH cord-306414-2dv3qced 267 62 CoV-2 CoV-2 NNP cord-306414-2dv3qced 267 63 influence influence VB cord-306414-2dv3qced 267 64 the the DT cord-306414-2dv3qced 267 65 TCR TCR NNP cord-306414-2dv3qced 267 66 repertoire repertoire NN cord-306414-2dv3qced 267 67 ? ? . cord-306414-2dv3qced 268 1 How how WRB cord-306414-2dv3qced 268 2 and and CC cord-306414-2dv3qced 268 3 which which WDT cord-306414-2dv3qced 268 4 characteristics characteristic NNS cord-306414-2dv3qced 268 5 of of IN cord-306414-2dv3qced 268 6 the the DT cord-306414-2dv3qced 268 7 TCR TCR NNP cord-306414-2dv3qced 268 8 repertoire repertoire NN cord-306414-2dv3qced 268 9 may may MD cord-306414-2dv3qced 268 10 explain explain VB cord-306414-2dv3qced 268 11 the the DT cord-306414-2dv3qced 268 12 disproportional disproportional JJ cord-306414-2dv3qced 268 13 risk risk NN cord-306414-2dv3qced 268 14 of of IN cord-306414-2dv3qced 268 15 COVID-19 covid-19 DT cord-306414-2dv3qced 268 16 in in IN cord-306414-2dv3qced 268 17 older old JJR cord-306414-2dv3qced 268 18 population population NN cord-306414-2dv3qced 268 19 ? ? . cord-306414-2dv3qced 269 1 What what WDT cord-306414-2dv3qced 269 2 impact impact NN cord-306414-2dv3qced 269 3 does do VBZ cord-306414-2dv3qced 269 4 the the DT cord-306414-2dv3qced 269 5 lymphocytopenia lymphocytopenia NNP cord-306414-2dv3qced 269 6 in in IN cord-306414-2dv3qced 269 7 COVID-19 COVID-19 NNP cord-306414-2dv3qced 269 8 have have VBP cord-306414-2dv3qced 269 9 on on IN cord-306414-2dv3qced 269 10 the the DT cord-306414-2dv3qced 269 11 TCR TCR NNP cord-306414-2dv3qced 269 12 repertoire repertoire NN cord-306414-2dv3qced 269 13 architecture architecture NN cord-306414-2dv3qced 269 14 , , , cord-306414-2dv3qced 269 15 diversity diversity NN cord-306414-2dv3qced 269 16 , , , cord-306414-2dv3qced 269 17 and and CC cord-306414-2dv3qced 269 18 composition composition NN cord-306414-2dv3qced 269 19 ? ? . cord-306414-2dv3qced 270 1 How how WRB cord-306414-2dv3qced 270 2 does do VBZ cord-306414-2dv3qced 270 3 genetic genetic JJ cord-306414-2dv3qced 270 4 diversity diversity NN cord-306414-2dv3qced 270 5 in in IN cord-306414-2dv3qced 270 6 the the DT cord-306414-2dv3qced 270 7 HLAs HLAs NNP cord-306414-2dv3qced 270 8 contribute contribute VB cord-306414-2dv3qced 270 9 to to IN cord-306414-2dv3qced 270 10 the the DT cord-306414-2dv3qced 270 11 SARS- sars- NN cord-306414-2dv3qced 271 1 CoV-2-specific CoV-2-specific NNP cord-306414-2dv3qced 271 2 TCR TCR NNP cord-306414-2dv3qced 271 3 repertoire repertoire NN cord-306414-2dv3qced 271 4 and and CC cord-306414-2dv3qced 271 5 , , , cord-306414-2dv3qced 271 6 potentially potentially RB cord-306414-2dv3qced 271 7 , , , cord-306414-2dv3qced 271 8 the the DT cord-306414-2dv3qced 271 9 immune immune JJ cord-306414-2dv3qced 271 10 response response NN cord-306414-2dv3qced 271 11 ? ? . cord-306414-2dv3qced 272 1 How how WRB cord-306414-2dv3qced 272 2 might may MD cord-306414-2dv3qced 272 3 factors factor NNS cord-306414-2dv3qced 272 4 such such JJ cord-306414-2dv3qced 272 5 as as IN cord-306414-2dv3qced 272 6 comorbidities comorbiditie NNS cord-306414-2dv3qced 272 7 influence influence VBP cord-306414-2dv3qced 272 8 the the DT cord-306414-2dv3qced 272 9 TCR TCR NNP cord-306414-2dv3qced 272 10 repertoire repertoire NN cord-306414-2dv3qced 272 11 in in IN cord-306414-2dv3qced 272 12 COVID-19 COVID-19 NNP cord-306414-2dv3qced 272 13 patients patient NNS cord-306414-2dv3qced 272 14 ? ? . cord-306414-2dv3qced 273 1 COVID-19 covid-19 JJ cord-306414-2dv3qced 273 2 patients patient NNS cord-306414-2dv3qced 273 3 [ [ -LRB- cord-306414-2dv3qced 273 4 54 54 CD cord-306414-2dv3qced 273 5 ] ] -RRB- cord-306414-2dv3qced 273 6 . . . cord-306414-2dv3qced 274 1 We -PRON- PRP cord-306414-2dv3qced 274 2 foresee foresee VBP cord-306414-2dv3qced 274 3 that that IN cord-306414-2dv3qced 274 4 other other JJ cord-306414-2dv3qced 274 5 platforms platform NNS cord-306414-2dv3qced 274 6 can can MD cord-306414-2dv3qced 274 7 also also RB cord-306414-2dv3qced 274 8 provide provide VB cord-306414-2dv3qced 274 9 valuable valuable JJ cord-306414-2dv3qced 274 10 data datum NNS cord-306414-2dv3qced 274 11 , , , cord-306414-2dv3qced 274 12 such such JJ cord-306414-2dv3qced 274 13 as as IN cord-306414-2dv3qced 274 14 CyTOF CyTOF NNP cord-306414-2dv3qced 274 15 mass mass NN cord-306414-2dv3qced 274 16 cytometry cytometry NN cord-306414-2dv3qced 274 17 and and CC cord-306414-2dv3qced 274 18 the the DT cord-306414-2dv3qced 274 19 10×Genomics 10×genomics CD cord-306414-2dv3qced 274 20 iv iv NNP cord-306414-2dv3qced 274 21 immune immune JJ cord-306414-2dv3qced 274 22 profiling profiling NN cord-306414-2dv3qced 274 23 platform platform NN cord-306414-2dv3qced 274 24 that that WDT cord-306414-2dv3qced 274 25 utilizes utilize VBZ cord-306414-2dv3qced 274 26 DNAbarcoded dnabarcoded JJ cord-306414-2dv3qced 274 27 peptide peptide NNP cord-306414-2dv3qced 274 28 - - HYPH cord-306414-2dv3qced 274 29 MHC MHC NNP cord-306414-2dv3qced 274 30 ( ( -LRB- cord-306414-2dv3qced 274 31 pMHC pmhc NN cord-306414-2dv3qced 274 32 ) ) -RRB- cord-306414-2dv3qced 274 33 multimers multimer NNS cord-306414-2dv3qced 274 34 and and CC cord-306414-2dv3qced 274 35 antibodies antibody NNS cord-306414-2dv3qced 274 36 conjugated conjugate VBN cord-306414-2dv3qced 274 37 to to IN cord-306414-2dv3qced 274 38 barcodes barcode NNS cord-306414-2dv3qced 274 39 to to TO cord-306414-2dv3qced 274 40 dissect dissect VB cord-306414-2dv3qced 274 41 the the DT cord-306414-2dv3qced 274 42 immune immune JJ cord-306414-2dv3qced 274 43 repertoire repertoire NN cord-306414-2dv3qced 274 44 in in IN cord-306414-2dv3qced 274 45 the the DT cord-306414-2dv3qced 274 46 setting setting NN cord-306414-2dv3qced 274 47 of of IN cord-306414-2dv3qced 274 48 COVID-19 covid-19 NN cord-306414-2dv3qced 274 49 . . . cord-306414-2dv3qced 275 1 These these DT cord-306414-2dv3qced 275 2 analyses analysis NNS cord-306414-2dv3qced 275 3 should should MD cord-306414-2dv3qced 275 4 reveal reveal VB cord-306414-2dv3qced 275 5 clonality clonality NN cord-306414-2dv3qced 275 6 , , , cord-306414-2dv3qced 275 7 diversity diversity NN cord-306414-2dv3qced 275 8 , , , cord-306414-2dv3qced 275 9 antigen antigen NN cord-306414-2dv3qced 275 10 specificity specificity NN cord-306414-2dv3qced 275 11 , , , cord-306414-2dv3qced 275 12 and and CC cord-306414-2dv3qced 275 13 cellular cellular JJ cord-306414-2dv3qced 275 14 context context NN cord-306414-2dv3qced 275 15 ; ; : cord-306414-2dv3qced 275 16 and and CC cord-306414-2dv3qced 275 17 pair pair VB cord-306414-2dv3qced 275 18 α α NN cord-306414-2dv3qced 275 19 and and CC cord-306414-2dv3qced 275 20 β β NN cord-306414-2dv3qced 275 21 chain chain NN cord-306414-2dv3qced 275 22 TCR TCR NNP cord-306414-2dv3qced 275 23 sequences sequence NNS cord-306414-2dv3qced 275 24 from from IN cord-306414-2dv3qced 275 25 individual individual JJ cord-306414-2dv3qced 275 26 T t NN cord-306414-2dv3qced 275 27 cells cell NNS cord-306414-2dv3qced 275 28 . . . cord-306414-2dv3qced 276 1 It -PRON- PRP cord-306414-2dv3qced 276 2 also also RB cord-306414-2dv3qced 276 3 allows allow VBZ cord-306414-2dv3qced 276 4 for for IN cord-306414-2dv3qced 276 5 pairing pair VBG cord-306414-2dv3qced 276 6 heavy heavy JJ cord-306414-2dv3qced 276 7 and and CC cord-306414-2dv3qced 276 8 light light JJ cord-306414-2dv3qced 276 9 chain chain NN cord-306414-2dv3qced 276 10 immunoglobulin immunoglobulin NN cord-306414-2dv3qced 276 11 sequences sequence NNS cord-306414-2dv3qced 276 12 from from IN cord-306414-2dv3qced 276 13 individual individual JJ cord-306414-2dv3qced 276 14 B b NN cord-306414-2dv3qced 276 15 cells cell NNS cord-306414-2dv3qced 276 16 . . . cord-306414-2dv3qced 277 1 These these DT cord-306414-2dv3qced 277 2 data datum NNS cord-306414-2dv3qced 277 3 , , , cord-306414-2dv3qced 277 4 combined combine VBN cord-306414-2dv3qced 277 5 with with IN cord-306414-2dv3qced 277 6 sophisticated sophisticated JJ cord-306414-2dv3qced 277 7 computational computational JJ cord-306414-2dv3qced 277 8 methods method NNS cord-306414-2dv3qced 277 9 , , , cord-306414-2dv3qced 277 10 will will MD cord-306414-2dv3qced 277 11 enable enable VB cord-306414-2dv3qced 277 12 the the DT cord-306414-2dv3qced 277 13 identification identification NN cord-306414-2dv3qced 277 14 of of IN cord-306414-2dv3qced 277 15 the the DT cord-306414-2dv3qced 277 16 paired pair VBN cord-306414-2dv3qced 277 17 TCR TCR NNP cord-306414-2dv3qced 277 18 α α NNP cord-306414-2dv3qced 277 19 and and CC cord-306414-2dv3qced 277 20 β β NN cord-306414-2dv3qced 277 21 chain chain NN cord-306414-2dv3qced 277 22 sequences sequence NNS cord-306414-2dv3qced 277 23 with with IN cord-306414-2dv3qced 277 24 TCR TCR NNP cord-306414-2dv3qced 277 25 - - HYPH cord-306414-2dv3qced 277 26 pMHC pmhc JJ cord-306414-2dv3qced 277 27 specificity specificity NN cord-306414-2dv3qced 277 28 corresponding correspond VBG cord-306414-2dv3qced 277 29 to to IN cord-306414-2dv3qced 277 30 SARS SARS NNP cord-306414-2dv3qced 277 31 - - HYPH cord-306414-2dv3qced 277 32 CoV-2 CoV-2 NNP cord-306414-2dv3qced 277 33 . . . cord-306414-2dv3qced 278 1 More more RBR cord-306414-2dv3qced 278 2 importantly importantly RB cord-306414-2dv3qced 278 3 it -PRON- PRP cord-306414-2dv3qced 278 4 will will MD cord-306414-2dv3qced 278 5 simultaneously simultaneously RB cord-306414-2dv3qced 278 6 measure measure VB cord-306414-2dv3qced 278 7 cell cell NN cord-306414-2dv3qced 278 8 surface surface NN cord-306414-2dv3qced 278 9 protein protein NN cord-306414-2dv3qced 278 10 expression expression NN cord-306414-2dv3qced 278 11 with with IN cord-306414-2dv3qced 278 12 gene gene NN cord-306414-2dv3qced 278 13 expression expression NN cord-306414-2dv3qced 278 14 and and CC cord-306414-2dv3qced 278 15 uncover uncover VB cord-306414-2dv3qced 278 16 meaningful meaningful JJ cord-306414-2dv3qced 278 17 details detail NNS cord-306414-2dv3qced 278 18 related relate VBN cord-306414-2dv3qced 278 19 to to IN cord-306414-2dv3qced 278 20 the the DT cord-306414-2dv3qced 278 21 mechanisms mechanism NNS cord-306414-2dv3qced 278 22 contributing contribute VBG cord-306414-2dv3qced 278 23 to to IN cord-306414-2dv3qced 278 24 the the DT cord-306414-2dv3qced 278 25 pathology pathology NN cord-306414-2dv3qced 278 26 of of IN cord-306414-2dv3qced 278 27 this this DT cord-306414-2dv3qced 278 28 infection infection NN cord-306414-2dv3qced 278 29 and and CC cord-306414-2dv3qced 278 30 the the DT cord-306414-2dv3qced 278 31 patient patient NN cord-306414-2dv3qced 278 32 's 's POS cord-306414-2dv3qced 278 33 clinical clinical JJ cord-306414-2dv3qced 278 34 outcome outcome NN cord-306414-2dv3qced 278 35 [ [ -LRB- cord-306414-2dv3qced 278 36 57 57 CD cord-306414-2dv3qced 278 37 ] ] -RRB- cord-306414-2dv3qced 278 38 . . . cord-306414-2dv3qced 279 1 Together together RB cord-306414-2dv3qced 279 2 , , , cord-306414-2dv3qced 279 3 these these DT cord-306414-2dv3qced 279 4 technologies technology NNS cord-306414-2dv3qced 279 5 can can MD cord-306414-2dv3qced 279 6 be be VB cord-306414-2dv3qced 279 7 leveraged leverage VBN cord-306414-2dv3qced 279 8 to to TO cord-306414-2dv3qced 279 9 monitor monitor VB cord-306414-2dv3qced 279 10 adaptive adaptive JJ cord-306414-2dv3qced 279 11 immune immune JJ cord-306414-2dv3qced 279 12 responses response NNS cord-306414-2dv3qced 279 13 in in IN cord-306414-2dv3qced 279 14 COVID-19 covid-19 JJ cord-306414-2dv3qced 279 15 patients patient NNS cord-306414-2dv3qced 279 16 and and CC cord-306414-2dv3qced 279 17 guide guide VB cord-306414-2dv3qced 279 18 future future JJ cord-306414-2dv3qced 279 19 SARS SARS NNP cord-306414-2dv3qced 279 20 - - HYPH cord-306414-2dv3qced 279 21 CoV-2 CoV-2 NNP cord-306414-2dv3qced 279 22 immunotherapy immunotherapy NN cord-306414-2dv3qced 279 23 development development NN cord-306414-2dv3qced 279 24 . . . cord-306414-2dv3qced 280 1 Which which WDT cord-306414-2dv3qced 280 2 characteristics characteristic NNS cord-306414-2dv3qced 280 3 of of IN cord-306414-2dv3qced 280 4 the the DT cord-306414-2dv3qced 280 5 TCR TCR NNP cord-306414-2dv3qced 280 6 repertoire repertoire NN cord-306414-2dv3qced 280 7 may may MD cord-306414-2dv3qced 280 8 explain explain VB cord-306414-2dv3qced 280 9 the the DT cord-306414-2dv3qced 280 10 disproportional disproportional JJ cord-306414-2dv3qced 280 11 risk risk NN cord-306414-2dv3qced 280 12 of of IN cord-306414-2dv3qced 280 13 COVID-19 covid-19 DT cord-306414-2dv3qced 280 14 in in IN cord-306414-2dv3qced 280 15 older old JJR cord-306414-2dv3qced 280 16 population population NN cord-306414-2dv3qced 280 17 and and CC cord-306414-2dv3qced 280 18 how how WRB cord-306414-2dv3qced 280 19 genetic genetic JJ cord-306414-2dv3qced 280 20 diversity diversity NN cord-306414-2dv3qced 280 21 in in IN cord-306414-2dv3qced 280 22 the the DT cord-306414-2dv3qced 280 23 HLAs HLAs NNP cord-306414-2dv3qced 280 24 contribute contribute VB cord-306414-2dv3qced 280 25 to to IN cord-306414-2dv3qced 280 26 the the DT cord-306414-2dv3qced 280 27 SARS- sars- NN cord-306414-2dv3qced 281 1 CoV-2-specific CoV-2-specific NNP cord-306414-2dv3qced 281 2 TCR TCR NNP cord-306414-2dv3qced 281 3 repertoire repertoire NN cord-306414-2dv3qced 281 4 and and CC cord-306414-2dv3qced 281 5 potentially potentially RB cord-306414-2dv3qced 281 6 the the DT cord-306414-2dv3qced 281 7 immune immune JJ cord-306414-2dv3qced 281 8 response response NN cord-306414-2dv3qced 281 9 are be VBP cord-306414-2dv3qced 281 10 some some DT cord-306414-2dv3qced 281 11 of of IN cord-306414-2dv3qced 281 12 many many JJ cord-306414-2dv3qced 281 13 outstanding outstanding JJ cord-306414-2dv3qced 281 14 questions question NNS cord-306414-2dv3qced 281 15 to to TO cord-306414-2dv3qced 281 16 be be VB cord-306414-2dv3qced 281 17 tackled tackle VBN cord-306414-2dv3qced 281 18 ( ( -LRB- cord-306414-2dv3qced 281 19 see see VB cord-306414-2dv3qced 281 20 Outstanding Outstanding NNP cord-306414-2dv3qced 281 21 Questions Questions NNPS cord-306414-2dv3qced 281 22 ) ) -RRB- cord-306414-2dv3qced 281 23 . . . cord-306414-2dv3qced 282 1 COVID-19 covid-19 JJ cord-306414-2dv3qced 282 2 infection infection NN cord-306414-2dv3qced 282 3 : : : cord-306414-2dv3qced 282 4 the the DT cord-306414-2dv3qced 282 5 perspectives perspective NNS cord-306414-2dv3qced 282 6 on on IN cord-306414-2dv3qced 282 7 immune immune JJ cord-306414-2dv3qced 282 8 responses response NNS cord-306414-2dv3qced 282 9 Clinical clinical JJ cord-306414-2dv3qced 282 10 characteristics characteristic NNS cord-306414-2dv3qced 282 11 of of IN cord-306414-2dv3qced 282 12 138 138 CD cord-306414-2dv3qced 282 13 hospitalized hospitalize VBN cord-306414-2dv3qced 282 14 patients patient NNS cord-306414-2dv3qced 282 15 with with IN cord-306414-2dv3qced 282 16 2019 2019 CD cord-306414-2dv3qced 282 17 novel novel JJ cord-306414-2dv3qced 282 18 coronavirus coronavirus NN cord-306414-2dv3qced 282 19 - - HYPH cord-306414-2dv3qced 282 20 infected infect VBN cord-306414-2dv3qced 282 21 pneumonia pneumonia NN cord-306414-2dv3qced 282 22 in in IN cord-306414-2dv3qced 282 23 Wuhan Wuhan NNP cord-306414-2dv3qced 282 24 , , , cord-306414-2dv3qced 282 25 China China NNP cord-306414-2dv3qced 282 26 Baseline Baseline NNP cord-306414-2dv3qced 282 27 characteristics characteristic NNS cord-306414-2dv3qced 282 28 and and CC cord-306414-2dv3qced 282 29 outcomes outcome NNS cord-306414-2dv3qced 282 30 of of IN cord-306414-2dv3qced 282 31 1591 1591 CD cord-306414-2dv3qced 282 32 patients patient NNS cord-306414-2dv3qced 282 33 infected infect VBN cord-306414-2dv3qced 282 34 with with IN cord-306414-2dv3qced 282 35 SARS SARS NNP cord-306414-2dv3qced 282 36 - - HYPH cord-306414-2dv3qced 282 37 CoV-2 CoV-2 NNP cord-306414-2dv3qced 282 38 admitted admit VBD cord-306414-2dv3qced 282 39 to to IN cord-306414-2dv3qced 282 40 ICUs ICUs NNP cord-306414-2dv3qced 282 41 of of IN cord-306414-2dv3qced 282 42 the the DT cord-306414-2dv3qced 282 43 Lombardy Lombardy NNP cord-306414-2dv3qced 282 44 region region NN cord-306414-2dv3qced 282 45 Characterization characterization NN cord-306414-2dv3qced 282 46 of of IN cord-306414-2dv3qced 282 47 the the DT cord-306414-2dv3qced 282 48 receptor receptor NN cord-306414-2dv3qced 282 49 - - HYPH cord-306414-2dv3qced 282 50 binding bind VBG cord-306414-2dv3qced 282 51 domain domain NN cord-306414-2dv3qced 282 52 ( ( -LRB- cord-306414-2dv3qced 282 53 RBD RBD NNP cord-306414-2dv3qced 282 54 ) ) -RRB- cord-306414-2dv3qced 282 55 of of IN cord-306414-2dv3qced 282 56 2019 2019 CD cord-306414-2dv3qced 282 57 novel novel JJ cord-306414-2dv3qced 282 58 coronavirus coronavirus NN cord-306414-2dv3qced 282 59 : : : cord-306414-2dv3qced 282 60 implication implication NN cord-306414-2dv3qced 282 61 for for IN cord-306414-2dv3qced 282 62 development development NN cord-306414-2dv3qced 282 63 of of IN cord-306414-2dv3qced 282 64 RBD RBD NNP cord-306414-2dv3qced 282 65 protein protein NN cord-306414-2dv3qced 282 66 as as IN cord-306414-2dv3qced 282 67 a a DT cord-306414-2dv3qced 282 68 viral viral JJ cord-306414-2dv3qced 282 69 attachment attachment NN cord-306414-2dv3qced 282 70 inhibitor inhibitor NN cord-306414-2dv3qced 282 71 and and CC cord-306414-2dv3qced 282 72 vaccine vaccine NN cord-306414-2dv3qced 283 1 The the DT cord-306414-2dv3qced 283 2 pathogenicity pathogenicity NN cord-306414-2dv3qced 283 3 of of IN cord-306414-2dv3qced 283 4 SARS SARS NNP cord-306414-2dv3qced 283 5 - - HYPH cord-306414-2dv3qced 283 6 CoV-2 CoV-2 NNP cord-306414-2dv3qced 283 7 in in IN cord-306414-2dv3qced 283 8 hACE2 hace2 NN cord-306414-2dv3qced 283 9 transgenic transgenic JJ cord-306414-2dv3qced 283 10 mice mouse NNS cord-306414-2dv3qced 284 1 Pathological pathological JJ cord-306414-2dv3qced 284 2 findings finding NNS cord-306414-2dv3qced 284 3 of of IN cord-306414-2dv3qced 284 4 COVID-19 COVID-19 NNP cord-306414-2dv3qced 284 5 associated associate VBN cord-306414-2dv3qced 284 6 with with IN cord-306414-2dv3qced 284 7 acute acute JJ cord-306414-2dv3qced 284 8 respiratory respiratory JJ cord-306414-2dv3qced 284 9 distress distress NN cord-306414-2dv3qced 284 10 syndrome syndrome NN cord-306414-2dv3qced 285 1 The the DT cord-306414-2dv3qced 285 2 laboratory laboratory NN cord-306414-2dv3qced 285 3 tests test NNS cord-306414-2dv3qced 285 4 and and CC cord-306414-2dv3qced 285 5 host host NN cord-306414-2dv3qced 285 6 immunity immunity NN cord-306414-2dv3qced 285 7 of of IN cord-306414-2dv3qced 285 8 COVID-19 covid-19 JJ cord-306414-2dv3qced 285 9 patients patient NNS cord-306414-2dv3qced 285 10 with with IN cord-306414-2dv3qced 285 11 different different JJ cord-306414-2dv3qced 285 12 severity severity NN cord-306414-2dv3qced 285 13 of of IN cord-306414-2dv3qced 285 14 illness illness NN cord-306414-2dv3qced 285 15 Clinical clinical JJ cord-306414-2dv3qced 285 16 and and CC cord-306414-2dv3qced 285 17 immunological immunological JJ cord-306414-2dv3qced 285 18 features feature NNS cord-306414-2dv3qced 285 19 of of IN cord-306414-2dv3qced 285 20 severe severe JJ cord-306414-2dv3qced 285 21 and and CC cord-306414-2dv3qced 285 22 moderate moderate JJ cord-306414-2dv3qced 285 23 coronavirus coronavirus NN cord-306414-2dv3qced 285 24 disease disease NN cord-306414-2dv3qced 285 25 2019 2019 CD cord-306414-2dv3qced 285 26 Prognostic prognostic JJ cord-306414-2dv3qced 285 27 value value NN cord-306414-2dv3qced 285 28 of of IN cord-306414-2dv3qced 285 29 interleukin-6 interleukin-6 NNP cord-306414-2dv3qced 285 30 , , , cord-306414-2dv3qced 285 31 C C NNP cord-306414-2dv3qced 285 32 - - HYPH cord-306414-2dv3qced 285 33 reactive reactive JJ cord-306414-2dv3qced 285 34 protein protein NN cord-306414-2dv3qced 285 35 , , , cord-306414-2dv3qced 285 36 and and CC cord-306414-2dv3qced 285 37 procalcitonin procalcitonin NNS cord-306414-2dv3qced 285 38 in in IN cord-306414-2dv3qced 285 39 patients patient NNS cord-306414-2dv3qced 285 40 with with IN cord-306414-2dv3qced 285 41 COVID-19 COVID-19 NNP cord-306414-2dv3qced 285 42 Dysregulation Dysregulation NNP cord-306414-2dv3qced 285 43 of of IN cord-306414-2dv3qced 285 44 immune immune JJ cord-306414-2dv3qced 285 45 response response NN cord-306414-2dv3qced 285 46 in in IN cord-306414-2dv3qced 285 47 patients patient NNS cord-306414-2dv3qced 285 48 with with IN cord-306414-2dv3qced 285 49 COVID-19 COVID-19 NNP cord-306414-2dv3qced 285 50 in in IN cord-306414-2dv3qced 285 51 Wuhan Wuhan NNP cord-306414-2dv3qced 285 52 Single single JJ cord-306414-2dv3qced 285 53 - - HYPH cord-306414-2dv3qced 285 54 cell cell NN cord-306414-2dv3qced 285 55 landscape landscape NN cord-306414-2dv3qced 285 56 of of IN cord-306414-2dv3qced 285 57 bronchoalveolar bronchoalveolar JJ cord-306414-2dv3qced 285 58 immune immune JJ cord-306414-2dv3qced 285 59 cells cell NNS cord-306414-2dv3qced 285 60 in in IN cord-306414-2dv3qced 285 61 patients patient NNS cord-306414-2dv3qced 285 62 with with IN cord-306414-2dv3qced 285 63 COVID-19 COVID-19 NNP cord-306414-2dv3qced 285 64 Treatment Treatment NNP cord-306414-2dv3qced 285 65 of of IN cord-306414-2dv3qced 285 66 5 5 CD cord-306414-2dv3qced 285 67 critically critically RB cord-306414-2dv3qced 285 68 ill ill JJ cord-306414-2dv3qced 285 69 patients patient NNS cord-306414-2dv3qced 285 70 with with IN cord-306414-2dv3qced 285 71 COVID-19 COVID-19 NNP cord-306414-2dv3qced 285 72 with with IN cord-306414-2dv3qced 285 73 convalescent convalescent JJ cord-306414-2dv3qced 285 74 plasma plasma NN cord-306414-2dv3qced 285 75 Effectiveness Effectiveness NNP cord-306414-2dv3qced 285 76 of of IN cord-306414-2dv3qced 285 77 convalescent convalescent JJ cord-306414-2dv3qced 285 78 plasma plasma NN cord-306414-2dv3qced 285 79 therapy therapy NN cord-306414-2dv3qced 285 80 in in IN cord-306414-2dv3qced 285 81 severe severe JJ cord-306414-2dv3qced 285 82 COVID-19 covid-19 CD cord-306414-2dv3qced 285 83 patients patient NNS cord-306414-2dv3qced 285 84 Antibody Antibody NNP cord-306414-2dv3qced 285 85 responses response NNS cord-306414-2dv3qced 285 86 to to IN cord-306414-2dv3qced 285 87 SARS SARS NNP cord-306414-2dv3qced 285 88 - - HYPH cord-306414-2dv3qced 285 89 CoV-2 CoV-2 NNP cord-306414-2dv3qced 285 90 in in IN cord-306414-2dv3qced 285 91 patients patient NNS cord-306414-2dv3qced 285 92 with with IN cord-306414-2dv3qced 285 93 COVID-19 COVID-19 NNP cord-306414-2dv3qced 285 94 Antiviral Antiviral NNP cord-306414-2dv3qced 285 95 CD8(+ CD8(+ NNP cord-306414-2dv3qced 285 96 ) ) -RRB- cord-306414-2dv3qced 286 1 T t NN cord-306414-2dv3qced 286 2 cells cell NNS cord-306414-2dv3qced 286 3 restricted restrict VBN cord-306414-2dv3qced 286 4 by by IN cord-306414-2dv3qced 286 5 human human JJ cord-306414-2dv3qced 286 6 leukocyte leukocyte NN cord-306414-2dv3qced 286 7 antigen antigen NN cord-306414-2dv3qced 286 8 class class NN cord-306414-2dv3qced 286 9 II II NNP cord-306414-2dv3qced 286 10 exist exist VBP cord-306414-2dv3qced 286 11 during during IN cord-306414-2dv3qced 286 12 natural natural JJ cord-306414-2dv3qced 286 13 HIV HIV NNP cord-306414-2dv3qced 286 14 infection infection NN cord-306414-2dv3qced 286 15 and and CC cord-306414-2dv3qced 286 16 exhibit exhibit NN cord-306414-2dv3qced 286 17 clonal clonal JJ cord-306414-2dv3qced 286 18 expansion expansion NN cord-306414-2dv3qced 286 19 Human Human NNP cord-306414-2dv3qced 286 20 in in IN cord-306414-2dv3qced 286 21 vivo vivo NN cord-306414-2dv3qced 286 22 - - HYPH cord-306414-2dv3qced 286 23 generated generate VBN cord-306414-2dv3qced 286 24 monocyte monocyte NNP cord-306414-2dv3qced 286 25 - - HYPH cord-306414-2dv3qced 286 26 derived derive VBN cord-306414-2dv3qced 286 27 dendritic dendritic JJ cord-306414-2dv3qced 286 28 cells cell NNS cord-306414-2dv3qced 286 29 and and CC cord-306414-2dv3qced 286 30 macrophages macrophage NNS cord-306414-2dv3qced 286 31 crosspresent crosspresent NN cord-306414-2dv3qced 286 32 antigens antigen NNS cord-306414-2dv3qced 286 33 through through IN cord-306414-2dv3qced 286 34 a a DT cord-306414-2dv3qced 286 35 vacuolar vacuolar JJ cord-306414-2dv3qced 286 36 pathway pathway NN cord-306414-2dv3qced 286 37 Select Select NNP cord-306414-2dv3qced 286 38 sequencing sequencing NN cord-306414-2dv3qced 286 39 of of IN cord-306414-2dv3qced 287 1 clonally clonally NNP cord-306414-2dv3qced 287 2 expanded expand VBD cord-306414-2dv3qced 287 3 CD8(+ cd8(+ CD cord-306414-2dv3qced 287 4 ) ) -RRB- cord-306414-2dv3qced 288 1 T T NNP cord-306414-2dv3qced 288 2 cells cell NNS cord-306414-2dv3qced 288 3 reveals reveal VBZ cord-306414-2dv3qced 288 4 limits limit NNS cord-306414-2dv3qced 288 5 to to IN cord-306414-2dv3qced 288 6 clonal clonal JJ cord-306414-2dv3qced 288 7 expansion expansion NN cord-306414-2dv3qced 288 8 Regulating regulate VBG cord-306414-2dv3qced 288 9 the the DT cord-306414-2dv3qced 288 10 adaptive adaptive JJ cord-306414-2dv3qced 288 11 immune immune JJ cord-306414-2dv3qced 288 12 response response NN cord-306414-2dv3qced 288 13 to to IN cord-306414-2dv3qced 288 14 respiratory respiratory JJ cord-306414-2dv3qced 288 15 virus virus NN cord-306414-2dv3qced 288 16 infection infection NN cord-306414-2dv3qced 288 17 Broad Broad NNP cord-306414-2dv3qced 288 18 TCR TCR NNP cord-306414-2dv3qced 288 19 repertoire repertoire NN cord-306414-2dv3qced 288 20 and and CC cord-306414-2dv3qced 288 21 diverse diverse JJ cord-306414-2dv3qced 288 22 structural structural JJ cord-306414-2dv3qced 288 23 solutions solution NNS cord-306414-2dv3qced 288 24 for for IN cord-306414-2dv3qced 288 25 recognition recognition NN cord-306414-2dv3qced 288 26 of of IN cord-306414-2dv3qced 288 27 an an DT cord-306414-2dv3qced 288 28 immunodominant immunodominant JJ cord-306414-2dv3qced 288 29 CD8(+ CD8(+ NNP cord-306414-2dv3qced 288 30 ) ) -RRB- cord-306414-2dv3qced 288 31 T t NN cord-306414-2dv3qced 288 32 cell cell NN cord-306414-2dv3qced 288 33 epitope epitope NN cord-306414-2dv3qced 288 34 MHC MHC NNP cord-306414-2dv3qced 288 35 class class NN cord-306414-2dv3qced 288 36 I -PRON- PRP cord-306414-2dv3qced 288 37 antigen antigen NN cord-306414-2dv3qced 288 38 presentation presentation NN cord-306414-2dv3qced 288 39 : : : cord-306414-2dv3qced 288 40 learning learn VBG cord-306414-2dv3qced 288 41 from from IN cord-306414-2dv3qced 288 42 viral viral JJ cord-306414-2dv3qced 288 43 evasion evasion NN cord-306414-2dv3qced 288 44 strategies strategy NNS cord-306414-2dv3qced 288 45 HIV-1 HIV-1 NNP cord-306414-2dv3qced 288 46 Nef Nef NNP cord-306414-2dv3qced 288 47 impairs impair VBZ cord-306414-2dv3qced 288 48 MHC MHC NNP cord-306414-2dv3qced 288 49 class class NN cord-306414-2dv3qced 288 50 II II NNP cord-306414-2dv3qced 288 51 antigen antigen NN cord-306414-2dv3qced 288 52 presentation presentation NN cord-306414-2dv3qced 288 53 and and CC cord-306414-2dv3qced 288 54 surface surface NN cord-306414-2dv3qced 288 55 expression expression NN cord-306414-2dv3qced 289 1 Quantifiable quantifiable JJ cord-306414-2dv3qced 289 2 predictive predictive JJ cord-306414-2dv3qced 289 3 features feature NNS cord-306414-2dv3qced 289 4 define define VBP cord-306414-2dv3qced 289 5 epitope epitope NN cord-306414-2dv3qced 289 6 - - HYPH cord-306414-2dv3qced 289 7 specific specific JJ cord-306414-2dv3qced 289 8 T t NN cord-306414-2dv3qced 289 9 cell cell NN cord-306414-2dv3qced 289 10 receptor receptor NN cord-306414-2dv3qced 289 11 repertoires repertoire NNS cord-306414-2dv3qced 290 1 The the DT cord-306414-2dv3qced 290 2 mechanism mechanism NN cord-306414-2dv3qced 290 3 and and CC cord-306414-2dv3qced 290 4 regulation regulation NN cord-306414-2dv3qced 290 5 of of IN cord-306414-2dv3qced 290 6 chromosomal chromosomal JJ cord-306414-2dv3qced 290 7 V(D)J V(D)J NNP cord-306414-2dv3qced 290 8 recombination recombination NN cord-306414-2dv3qced 290 9 Lack lack NN cord-306414-2dv3qced 290 10 of of IN cord-306414-2dv3qced 290 11 N n CD cord-306414-2dv3qced 290 12 regions region NNS cord-306414-2dv3qced 290 13 in in IN cord-306414-2dv3qced 290 14 antigen antigen NN cord-306414-2dv3qced 290 15 receptor receptor NN cord-306414-2dv3qced 290 16 variable variable JJ cord-306414-2dv3qced 290 17 region region NN cord-306414-2dv3qced 290 18 genes gene NNS cord-306414-2dv3qced 290 19 of of IN cord-306414-2dv3qced 290 20 TdT tdt NN cord-306414-2dv3qced 290 21 - - HYPH cord-306414-2dv3qced 290 22 deficient deficient JJ cord-306414-2dv3qced 290 23 lymphocytes lymphocyte NNS cord-306414-2dv3qced 290 24 The the DT cord-306414-2dv3qced 290 25 many many JJ cord-306414-2dv3qced 290 26 important important JJ cord-306414-2dv3qced 290 27 facets facet NNS cord-306414-2dv3qced 290 28 of of IN cord-306414-2dv3qced 290 29 Tcell Tcell NNP cord-306414-2dv3qced 290 30 repertoire repertoire NN cord-306414-2dv3qced 290 31 diversity diversity NN cord-306414-2dv3qced 290 32 Estimating Estimating NNP cord-306414-2dv3qced 290 33 T t NN cord-306414-2dv3qced 290 34 - - HYPH cord-306414-2dv3qced 290 35 cell cell NN cord-306414-2dv3qced 290 36 repertoire repertoire NN cord-306414-2dv3qced 290 37 diversity diversity NN cord-306414-2dv3qced 290 38 : : : cord-306414-2dv3qced 290 39 limitations limitation NNS cord-306414-2dv3qced 290 40 of of IN cord-306414-2dv3qced 290 41 classical classical JJ cord-306414-2dv3qced 290 42 estimators estimator NNS cord-306414-2dv3qced 290 43 and and CC cord-306414-2dv3qced 290 44 a a DT cord-306414-2dv3qced 290 45 new new JJ cord-306414-2dv3qced 290 46 approach approach NN cord-306414-2dv3qced 290 47 Mapping Mapping NNP cord-306414-2dv3qced 290 48 T t NN cord-306414-2dv3qced 290 49 - - HYPH cord-306414-2dv3qced 290 50 cell cell NN cord-306414-2dv3qced 290 51 receptor receptor NN cord-306414-2dv3qced 290 52 - - HYPH cord-306414-2dv3qced 290 53 peptide peptide NN cord-306414-2dv3qced 290 54 contacts contact NNS cord-306414-2dv3qced 290 55 by by IN cord-306414-2dv3qced 290 56 variant variant JJ cord-306414-2dv3qced 290 57 peptide peptide NN cord-306414-2dv3qced 290 58 immunization immunization NN cord-306414-2dv3qced 290 59 of of IN cord-306414-2dv3qced 290 60 single single JJ cord-306414-2dv3qced 290 61 - - HYPH cord-306414-2dv3qced 290 62 chain chain NN cord-306414-2dv3qced 290 63 transgenics transgenic NNS cord-306414-2dv3qced 290 64 Sequence sequence NN cord-306414-2dv3qced 290 65 and and CC cord-306414-2dv3qced 290 66 structural structural JJ cord-306414-2dv3qced 290 67 analyses analysis NNS cord-306414-2dv3qced 290 68 reveal reveal VBP cord-306414-2dv3qced 290 69 distinct distinct JJ cord-306414-2dv3qced 290 70 and and CC cord-306414-2dv3qced 290 71 highly highly RB cord-306414-2dv3qced 290 72 diverse diverse JJ cord-306414-2dv3qced 290 73 human human JJ cord-306414-2dv3qced 290 74 CD8(+ CD8(+ NNS cord-306414-2dv3qced 290 75 ) ) -RRB- cord-306414-2dv3qced 291 1 TCR TCR NNP cord-306414-2dv3qced 291 2 repertoires repertoire NNS cord-306414-2dv3qced 291 3 to to TO cord-306414-2dv3qced 291 4 immunodominant immunodominant JJ cord-306414-2dv3qced 291 5 viral viral JJ cord-306414-2dv3qced 291 6 antigens antigen NNS cord-306414-2dv3qced 291 7 Selection Selection NNP cord-306414-2dv3qced 291 8 of of IN cord-306414-2dv3qced 291 9 T T NNP cord-306414-2dv3qced 291 10 cell cell NN cord-306414-2dv3qced 291 11 clones clone NNS cord-306414-2dv3qced 291 12 expressing express VBG cord-306414-2dv3qced 291 13 high high JJ cord-306414-2dv3qced 291 14 - - HYPH cord-306414-2dv3qced 291 15 affinity affinity NN cord-306414-2dv3qced 291 16 public public JJ cord-306414-2dv3qced 291 17 TCRs tcr NNS cord-306414-2dv3qced 291 18 within within IN cord-306414-2dv3qced 291 19 human human JJ cord-306414-2dv3qced 291 20 cytomegalovirus cytomegalovirus NN cord-306414-2dv3qced 291 21 - - HYPH cord-306414-2dv3qced 291 22 specific specific JJ cord-306414-2dv3qced 291 23 CD8 CD8 NNP cord-306414-2dv3qced 291 24 T T NNP cord-306414-2dv3qced 291 25 cell cell NN cord-306414-2dv3qced 291 26 responses response NNS cord-306414-2dv3qced 291 27 Major major JJ cord-306414-2dv3qced 291 28 expansion expansion NN cord-306414-2dv3qced 291 29 of of IN cord-306414-2dv3qced 291 30 CD8 CD8 NNP cord-306414-2dv3qced 291 31 + + CC cord-306414-2dv3qced 291 32 T T NNP cord-306414-2dv3qced 291 33 cells cell NNS cord-306414-2dv3qced 291 34 with with IN cord-306414-2dv3qced 291 35 a a DT cord-306414-2dv3qced 291 36 predominant predominant JJ cord-306414-2dv3qced 291 37 V v NN cord-306414-2dv3qced 291 38 beta beta NN cord-306414-2dv3qced 291 39 usage usage NN cord-306414-2dv3qced 291 40 during during IN cord-306414-2dv3qced 291 41 the the DT cord-306414-2dv3qced 291 42 primary primary JJ cord-306414-2dv3qced 291 43 immune immune JJ cord-306414-2dv3qced 291 44 response response NN cord-306414-2dv3qced 291 45 to to IN cord-306414-2dv3qced 291 46 HIV HIV NNP cord-306414-2dv3qced 291 47 T T NNP cord-306414-2dv3qced 291 48 cell cell NN cord-306414-2dv3qced 291 49 selection selection NN cord-306414-2dv3qced 291 50 during during IN cord-306414-2dv3qced 291 51 the the DT cord-306414-2dv3qced 291 52 evolution evolution NN cord-306414-2dv3qced 291 53 of of IN cord-306414-2dv3qced 291 54 CD8 CD8 NNP cord-306414-2dv3qced 291 55 + + CC cord-306414-2dv3qced 291 56 T T NNP cord-306414-2dv3qced 291 57 cell cell NN cord-306414-2dv3qced 291 58 memory memory NN cord-306414-2dv3qced 291 59 in in IN cord-306414-2dv3qced 291 60 vivo vivo NNP cord-306414-2dv3qced 291 61 Single single JJ cord-306414-2dv3qced 291 62 - - HYPH cord-306414-2dv3qced 291 63 cell cell NN cord-306414-2dv3qced 291 64 approach approach NN cord-306414-2dv3qced 291 65 to to IN cord-306414-2dv3qced 291 66 influenza influenza NN cord-306414-2dv3qced 291 67 - - HYPH cord-306414-2dv3qced 291 68 specific specific JJ cord-306414-2dv3qced 291 69 CD8(+ CD8(+ NNS cord-306414-2dv3qced 291 70 ) ) -RRB- cord-306414-2dv3qced 291 71 T t NN cord-306414-2dv3qced 291 72 cell cell NN cord-306414-2dv3qced 291 73 receptor receptor NN cord-306414-2dv3qced 291 74 repertoires repertoire NNS cord-306414-2dv3qced 291 75 across across IN cord-306414-2dv3qced 291 76 different different JJ cord-306414-2dv3qced 291 77 age age NN cord-306414-2dv3qced 291 78 groups group NNS cord-306414-2dv3qced 291 79 , , , cord-306414-2dv3qced 291 80 tissues tissue NNS cord-306414-2dv3qced 291 81 , , , cord-306414-2dv3qced 291 82 and and CC cord-306414-2dv3qced 291 83 following follow VBG cord-306414-2dv3qced 291 84 influenza influenza NN cord-306414-2dv3qced 291 85 virus virus NN cord-306414-2dv3qced 291 86 infection infection NN cord-306414-2dv3qced 291 87 Epstein Epstein NNP cord-306414-2dv3qced 291 88 - - HYPH cord-306414-2dv3qced 291 89 Barr Barr NNP cord-306414-2dv3qced 291 90 virus virus NN cord-306414-2dv3qced 291 91 epitope epitope NN cord-306414-2dv3qced 291 92 - - : cord-306414-2dv3qced 291 93 major major JJ cord-306414-2dv3qced 291 94 histocompatibility histocompatibility NN cord-306414-2dv3qced 291 95 complex complex NN cord-306414-2dv3qced 291 96 interaction interaction NN cord-306414-2dv3qced 291 97 combined combine VBN cord-306414-2dv3qced 291 98 with with IN cord-306414-2dv3qced 291 99 convergent convergent JJ cord-306414-2dv3qced 291 100 recombination recombination NN cord-306414-2dv3qced 291 101 drives drive VBZ cord-306414-2dv3qced 291 102 selection selection NN cord-306414-2dv3qced 291 103 of of IN cord-306414-2dv3qced 291 104 diverse diverse JJ cord-306414-2dv3qced 291 105 T t NN cord-306414-2dv3qced 291 106 cell cell NN cord-306414-2dv3qced 291 107 receptor receptor NN cord-306414-2dv3qced 291 108 alpha alpha NN cord-306414-2dv3qced 291 109 and and CC cord-306414-2dv3qced 291 110 beta beta NN cord-306414-2dv3qced 291 111 repertoires repertoire NNS cord-306414-2dv3qced 291 112 Reverse reverse VBP cord-306414-2dv3qced 291 113 TCR TCR NNP cord-306414-2dv3qced 292 1 repertoire repertoire JJ cord-306414-2dv3qced 292 2 evolution evolution NN cord-306414-2dv3qced 292 3 toward toward IN cord-306414-2dv3qced 292 4 dominant dominant JJ cord-306414-2dv3qced 292 5 low low JJ cord-306414-2dv3qced 292 6 - - HYPH cord-306414-2dv3qced 292 7 affinity affinity NN cord-306414-2dv3qced 292 8 clones clone NNS cord-306414-2dv3qced 292 9 during during IN cord-306414-2dv3qced 292 10 chronic chronic JJ cord-306414-2dv3qced 292 11 CMV CMV NNP cord-306414-2dv3qced 292 12 infection infection NN cord-306414-2dv3qced 292 13 Dynamics dynamic NNS cord-306414-2dv3qced 292 14 of of IN cord-306414-2dv3qced 292 15 individual individual JJ cord-306414-2dv3qced 292 16 T t NN cord-306414-2dv3qced 292 17 cell cell NN cord-306414-2dv3qced 292 18 repertoires repertoire NNS cord-306414-2dv3qced 292 19 : : : cord-306414-2dv3qced 292 20 from from IN cord-306414-2dv3qced 292 21 cord cord NN cord-306414-2dv3qced 292 22 blood blood NN cord-306414-2dv3qced 292 23 to to IN cord-306414-2dv3qced 292 24 centenarians centenarian NNS cord-306414-2dv3qced 292 25 Characteristics characteristic NNS cord-306414-2dv3qced 292 26 of of IN cord-306414-2dv3qced 292 27 and and CC cord-306414-2dv3qced 292 28 important important JJ cord-306414-2dv3qced 292 29 lessons lesson NNS cord-306414-2dv3qced 292 30 from from IN cord-306414-2dv3qced 292 31 the the DT cord-306414-2dv3qced 292 32 coronavirus coronavirus NN cord-306414-2dv3qced 292 33 disease disease NN cord-306414-2dv3qced 292 34 2019 2019 CD cord-306414-2dv3qced 292 35 ( ( -LRB- cord-306414-2dv3qced 292 36 COVID-19 COVID-19 NNP cord-306414-2dv3qced 292 37 ) ) -RRB- cord-306414-2dv3qced 292 38 outbreak outbreak NN cord-306414-2dv3qced 292 39 in in IN cord-306414-2dv3qced 292 40 China China NNP cord-306414-2dv3qced 292 41 : : : cord-306414-2dv3qced 292 42 summary summary NN cord-306414-2dv3qced 292 43 of of IN cord-306414-2dv3qced 292 44 a a DT cord-306414-2dv3qced 292 45 report report NN cord-306414-2dv3qced 292 46 of of IN cord-306414-2dv3qced 292 47 72314 72314 CD cord-306414-2dv3qced 292 48 cases case NNS cord-306414-2dv3qced 292 49 from from IN cord-306414-2dv3qced 292 50 the the DT cord-306414-2dv3qced 292 51 Chinese Chinese NNP cord-306414-2dv3qced 292 52 Center Center NNP cord-306414-2dv3qced 292 53 for for IN cord-306414-2dv3qced 292 54 Disease Disease NNP cord-306414-2dv3qced 292 55 Control Control NNP cord-306414-2dv3qced 292 56 and and CC cord-306414-2dv3qced 292 57 Prevention Prevention NNP cord-306414-2dv3qced 293 1 Clinical clinical JJ cord-306414-2dv3qced 293 2 course course NN cord-306414-2dv3qced 293 3 and and CC cord-306414-2dv3qced 293 4 risk risk NN cord-306414-2dv3qced 293 5 factors factor NNS cord-306414-2dv3qced 293 6 for for IN cord-306414-2dv3qced 293 7 mortality mortality NN cord-306414-2dv3qced 293 8 of of IN cord-306414-2dv3qced 293 9 adult adult NN cord-306414-2dv3qced 293 10 inpatients inpatient NNS cord-306414-2dv3qced 293 11 with with IN cord-306414-2dv3qced 293 12 COVID-19 COVID-19 NNP cord-306414-2dv3qced 293 13 in in IN cord-306414-2dv3qced 293 14 Wuhan Wuhan NNP cord-306414-2dv3qced 293 15 , , , cord-306414-2dv3qced 293 16 China China NNP cord-306414-2dv3qced 293 17 : : : cord-306414-2dv3qced 294 1 a a DT cord-306414-2dv3qced 294 2 retrospective retrospective JJ cord-306414-2dv3qced 294 3 cohort cohort NN cord-306414-2dv3qced 294 4 study study NN cord-306414-2dv3qced 294 5 Clinical clinical JJ cord-306414-2dv3qced 294 6 predictors predictor NNS cord-306414-2dv3qced 294 7 of of IN cord-306414-2dv3qced 294 8 mortality mortality NN cord-306414-2dv3qced 294 9 due due IN cord-306414-2dv3qced 294 10 to to IN cord-306414-2dv3qced 294 11 COVID-19 COVID-19 NNP cord-306414-2dv3qced 294 12 based base VBN cord-306414-2dv3qced 294 13 on on IN cord-306414-2dv3qced 294 14 an an DT cord-306414-2dv3qced 294 15 analysis analysis NN cord-306414-2dv3qced 294 16 of of IN cord-306414-2dv3qced 294 17 data datum NNS cord-306414-2dv3qced 294 18 of of IN cord-306414-2dv3qced 294 19 150 150 CD cord-306414-2dv3qced 294 20 patients patient NNS cord-306414-2dv3qced 294 21 from from IN cord-306414-2dv3qced 294 22 Wuhan Wuhan NNP cord-306414-2dv3qced 294 23 , , , cord-306414-2dv3qced 294 24 China China NNP cord-306414-2dv3qced 294 25 Perturbed perturb VBD cord-306414-2dv3qced 294 26 CD8(+ CD8(+ NNP cord-306414-2dv3qced 294 27 ) ) -RRB- cord-306414-2dv3qced 295 1 T t NN cord-306414-2dv3qced 295 2 cell cell NN cord-306414-2dv3qced 295 3 immunity immunity NN cord-306414-2dv3qced 295 4 across across IN cord-306414-2dv3qced 295 5 universal universal JJ cord-306414-2dv3qced 295 6 influenza influenza NN cord-306414-2dv3qced 295 7 epitopes epitope NNS cord-306414-2dv3qced 295 8 in in IN cord-306414-2dv3qced 295 9 the the DT cord-306414-2dv3qced 295 10 elderly elderly JJ cord-306414-2dv3qced 295 11 Narrowing narrowing NN cord-306414-2dv3qced 295 12 of of IN cord-306414-2dv3qced 295 13 human human JJ cord-306414-2dv3qced 295 14 influenza influenza NN cord-306414-2dv3qced 295 15 A a DT cord-306414-2dv3qced 295 16 virus virus NN cord-306414-2dv3qced 295 17 - - HYPH cord-306414-2dv3qced 295 18 specific specific JJ cord-306414-2dv3qced 295 19 T T NNP cord-306414-2dv3qced 295 20 cell cell NN cord-306414-2dv3qced 295 21 receptor receptor NN cord-306414-2dv3qced 295 22 alpha alpha NN cord-306414-2dv3qced 295 23 and and CC cord-306414-2dv3qced 295 24 beta beta NN cord-306414-2dv3qced 295 25 repertoires repertoire NNS cord-306414-2dv3qced 295 26 with with IN cord-306414-2dv3qced 295 27 increasing increase VBG cord-306414-2dv3qced 295 28 age age NN cord-306414-2dv3qced 295 29 Genetic genetic JJ cord-306414-2dv3qced 295 30 variation variation NN cord-306414-2dv3qced 295 31 in in IN cord-306414-2dv3qced 295 32 MHC MHC NNP cord-306414-2dv3qced 295 33 proteins protein NNS cord-306414-2dv3qced 295 34 is be VBZ cord-306414-2dv3qced 295 35 associated associate VBN cord-306414-2dv3qced 295 36 with with IN cord-306414-2dv3qced 295 37 T T NNP cord-306414-2dv3qced 295 38 cell cell NN cord-306414-2dv3qced 295 39 receptor receptor NN cord-306414-2dv3qced 295 40 expression expression NN cord-306414-2dv3qced 295 41 biases bias NNS cord-306414-2dv3qced 295 42 Influence influence NN cord-306414-2dv3qced 295 43 of of IN cord-306414-2dv3qced 295 44 HLA HLA NNP cord-306414-2dv3qced 295 45 genes gene NNS cord-306414-2dv3qced 295 46 on on IN cord-306414-2dv3qced 295 47 T T NNP cord-306414-2dv3qced 295 48 cell cell NN cord-306414-2dv3qced 295 49 receptor receptor NN cord-306414-2dv3qced 295 50 V v NN cord-306414-2dv3qced 295 51 segment segment NN cord-306414-2dv3qced 295 52 frequencies frequency NNS cord-306414-2dv3qced 295 53 and and CC cord-306414-2dv3qced 295 54 expression expression NN cord-306414-2dv3qced 295 55 levels level NNS cord-306414-2dv3qced 295 56 in in IN cord-306414-2dv3qced 295 57 peripheral peripheral JJ cord-306414-2dv3qced 295 58 blood blood NN cord-306414-2dv3qced 295 59 lymphocytes lymphocyte NNS cord-306414-2dv3qced 296 1 Influence influence NN cord-306414-2dv3qced 296 2 of of IN cord-306414-2dv3qced 296 3 HLA HLA NNP cord-306414-2dv3qced 296 4 class class NN cord-306414-2dv3qced 296 5 I i NN cord-306414-2dv3qced 296 6 and and CC cord-306414-2dv3qced 296 7 class class NN cord-306414-2dv3qced 296 8 II ii CD cord-306414-2dv3qced 296 9 antigens antigen NNS cord-306414-2dv3qced 296 10 on on IN cord-306414-2dv3qced 296 11 the the DT cord-306414-2dv3qced 296 12 peripheral peripheral JJ cord-306414-2dv3qced 296 13 T t NN cord-306414-2dv3qced 296 14 - - HYPH cord-306414-2dv3qced 296 15 cell cell NN cord-306414-2dv3qced 296 16 receptor receptor NN cord-306414-2dv3qced 296 17 repertoire repertoire NN cord-306414-2dv3qced 296 18 Relationship relationship NN cord-306414-2dv3qced 296 19 between between IN cord-306414-2dv3qced 296 20 HLA HLA NNP cord-306414-2dv3qced 296 21 tissue tissue NN cord-306414-2dv3qced 296 22 type type NN cord-306414-2dv3qced 296 23 , , , cord-306414-2dv3qced 296 24 CMV CMV NNP cord-306414-2dv3qced 296 25 infection infection NN cord-306414-2dv3qced 296 26 , , , cord-306414-2dv3qced 296 27 and and CC cord-306414-2dv3qced 296 28 acute acute JJ cord-306414-2dv3qced 296 29 graft graft NN cord-306414-2dv3qced 296 30 - - HYPH cord-306414-2dv3qced 296 31 vs vs IN cord-306414-2dv3qced 296 32 - - HYPH cord-306414-2dv3qced 296 33 host host NN cord-306414-2dv3qced 296 34 disease disease NN cord-306414-2dv3qced 296 35 after after IN cord-306414-2dv3qced 296 36 allogeneic allogeneic JJ cord-306414-2dv3qced 296 37 hematopoietic hematopoietic JJ cord-306414-2dv3qced 296 38 stem stem NN cord-306414-2dv3qced 296 39 cell cell NN cord-306414-2dv3qced 296 40 transplantation transplantation NN cord-306414-2dv3qced 296 41 : : : cord-306414-2dv3qced 296 42 single single JJ cord-306414-2dv3qced 296 43 - - HYPH cord-306414-2dv3qced 296 44 center center NN cord-306414-2dv3qced 296 45 experience experience NN cord-306414-2dv3qced 297 1 Preexisting preexist VBG cord-306414-2dv3qced 297 2 CD8 CD8 NNP cord-306414-2dv3qced 297 3 + + CC cord-306414-2dv3qced 297 4 T t NN cord-306414-2dv3qced 297 5 - - HYPH cord-306414-2dv3qced 297 6 cell cell NN cord-306414-2dv3qced 297 7 immunity immunity NN cord-306414-2dv3qced 297 8 to to IN cord-306414-2dv3qced 297 9 the the DT cord-306414-2dv3qced 297 10 H7N9 H7N9 NNP cord-306414-2dv3qced 297 11 influenza influenza NN cord-306414-2dv3qced 297 12 A a DT cord-306414-2dv3qced 297 13 virus virus NN cord-306414-2dv3qced 297 14 varies vary VBZ cord-306414-2dv3qced 297 15 across across IN cord-306414-2dv3qced 297 16 ethnicities ethnicity NNS cord-306414-2dv3qced 298 1 An an DT cord-306414-2dv3qced 298 2 increased increase VBN cord-306414-2dv3qced 298 3 frequency frequency NN cord-306414-2dv3qced 298 4 in in IN cord-306414-2dv3qced 298 5 HLA HLA NNP cord-306414-2dv3qced 298 6 class class NN cord-306414-2dv3qced 299 1 I -PRON- PRP cord-306414-2dv3qced 299 2 alleles allele NNS cord-306414-2dv3qced 299 3 and and CC cord-306414-2dv3qced 299 4 haplotypes haplotype NNS cord-306414-2dv3qced 299 5 suggests suggest VBZ cord-306414-2dv3qced 299 6 genetic genetic JJ cord-306414-2dv3qced 299 7 susceptibility susceptibility NN cord-306414-2dv3qced 299 8 to to TO cord-306414-2dv3qced 299 9 influenza influenza VB cord-306414-2dv3qced 299 10 A a DT cord-306414-2dv3qced 299 11 ( ( -LRB- cord-306414-2dv3qced 299 12 H1N1 H1N1 NNP cord-306414-2dv3qced 299 13 ) ) -RRB- cord-306414-2dv3qced 299 14 2009 2009 CD cord-306414-2dv3qced 299 15 pandemic pandemic NN cord-306414-2dv3qced 299 16 : : : cord-306414-2dv3qced 299 17 a a DT cord-306414-2dv3qced 299 18 case case NN cord-306414-2dv3qced 299 19 - - HYPH cord-306414-2dv3qced 299 20 control control NN cord-306414-2dv3qced 299 21 study study NN cord-306414-2dv3qced 299 22 HLA HLA NNP cord-306414-2dv3qced 299 23 targeting target VBG cord-306414-2dv3qced 299 24 efficiency efficiency NN cord-306414-2dv3qced 299 25 correlates correlate VBZ cord-306414-2dv3qced 299 26 with with IN cord-306414-2dv3qced 299 27 human human JJ cord-306414-2dv3qced 299 28 T t NN cord-306414-2dv3qced 299 29 - - HYPH cord-306414-2dv3qced 299 30 cell cell NN cord-306414-2dv3qced 299 31 response response NN cord-306414-2dv3qced 299 32 magnitude magnitude NN cord-306414-2dv3qced 299 33 and and CC cord-306414-2dv3qced 299 34 with with IN cord-306414-2dv3qced 299 35 mortality mortality NN cord-306414-2dv3qced 299 36 from from IN cord-306414-2dv3qced 299 37 influenza influenza NN cord-306414-2dv3qced 299 38 A a DT cord-306414-2dv3qced 299 39 infection infection NN cord-306414-2dv3qced 299 40 Human human JJ cord-306414-2dv3qced 299 41 leukocyte leukocyte NN cord-306414-2dv3qced 299 42 antigen antigen NN cord-306414-2dv3qced 299 43 susceptibility susceptibility NN cord-306414-2dv3qced 299 44 map map NN cord-306414-2dv3qced 299 45 for for IN cord-306414-2dv3qced 299 46 SARS SARS NNP cord-306414-2dv3qced 299 47 - - HYPH cord-306414-2dv3qced 299 48 CoV-2 CoV-2 NNP cord-306414-2dv3qced 299 49 Association Association NNP cord-306414-2dv3qced 299 50 of of IN cord-306414-2dv3qced 299 51 HLA HLA NNP cord-306414-2dv3qced 299 52 class class NN cord-306414-2dv3qced 299 53 I -PRON- PRP cord-306414-2dv3qced 299 54 with with IN cord-306414-2dv3qced 299 55 severe severe JJ cord-306414-2dv3qced 299 56 acute acute JJ cord-306414-2dv3qced 299 57 respiratory respiratory JJ cord-306414-2dv3qced 299 58 syndrome syndrome NN cord-306414-2dv3qced 299 59 coronavirus coronavirus NN cord-306414-2dv3qced 299 60 infection infection NN cord-306414-2dv3qced 300 1 Revealing reveal VBG cord-306414-2dv3qced 300 2 factors factor NNS cord-306414-2dv3qced 300 3 determining determine VBG cord-306414-2dv3qced 300 4 immunodominant immunodominant JJ cord-306414-2dv3qced 300 5 responses response NNS cord-306414-2dv3qced 300 6 against against IN cord-306414-2dv3qced 300 7 dominant dominant JJ cord-306414-2dv3qced 300 8 epitopes epitope NNS cord-306414-2dv3qced 300 9 Human Human NNP cord-306414-2dv3qced 300 10 T T NNP cord-306414-2dv3qced 300 11 cell cell NN cord-306414-2dv3qced 300 12 development development NN cord-306414-2dv3qced 300 13 , , , cord-306414-2dv3qced 300 14 localization localization NN cord-306414-2dv3qced 300 15 , , , cord-306414-2dv3qced 300 16 and and CC cord-306414-2dv3qced 300 17 function function VB cord-306414-2dv3qced 300 18 throughout throughout IN cord-306414-2dv3qced 300 19 life life NNP cord-306414-2dv3qced 300 20 T T NNP cord-306414-2dv3qced 300 21 cell cell NN cord-306414-2dv3qced 300 22 receptor receptor NN cord-306414-2dv3qced 300 23 cross cross NN cord-306414-2dv3qced 300 24 - - NN cord-306414-2dv3qced 300 25 reactivity reactivity NN cord-306414-2dv3qced 300 26 expanded expand VBN cord-306414-2dv3qced 300 27 by by IN cord-306414-2dv3qced 300 28 dramatic dramatic JJ cord-306414-2dv3qced 300 29 peptide peptide NN cord-306414-2dv3qced 300 30 - - HYPH cord-306414-2dv3qced 300 31 MHC MHC NNP cord-306414-2dv3qced 300 32 adaptability adaptability NN cord-306414-2dv3qced 300 33 Targets target NNS cord-306414-2dv3qced 300 34 of of IN cord-306414-2dv3qced 300 35 T T NNP cord-306414-2dv3qced 300 36 cell cell NN cord-306414-2dv3qced 300 37 responses response NNS cord-306414-2dv3qced 300 38 to to IN cord-306414-2dv3qced 300 39 SARS SARS NNP cord-306414-2dv3qced 300 40 - - HYPH cord-306414-2dv3qced 300 41 CoV-2 CoV-2 NNP cord-306414-2dv3qced 300 42 coronavirus coronavirus NN cord-306414-2dv3qced 300 43 in in IN cord-306414-2dv3qced 300 44 humans human NNS cord-306414-2dv3qced 300 45 with with IN cord-306414-2dv3qced 300 46 COVID-19 COVID-19 NNP cord-306414-2dv3qced 300 47 disease disease NN cord-306414-2dv3qced 300 48 and and CC cord-306414-2dv3qced 300 49 unexposed unexposed JJ cord-306414-2dv3qced 300 50 individuals individual NNS cord-306414-2dv3qced 301 1 Immune immune JJ cord-306414-2dv3qced 301 2 cell cell NN cord-306414-2dv3qced 301 3 profiling profiling NN cord-306414-2dv3qced 301 4 of of IN cord-306414-2dv3qced 301 5 COVID-19 covid-19 JJ cord-306414-2dv3qced 301 6 patients patient NNS cord-306414-2dv3qced 301 7 in in IN cord-306414-2dv3qced 301 8 the the DT cord-306414-2dv3qced 301 9 recovery recovery NN cord-306414-2dv3qced 301 10 stage stage NN cord-306414-2dv3qced 301 11 by by IN cord-306414-2dv3qced 301 12 single single JJ cord-306414-2dv3qced 301 13 - - HYPH cord-306414-2dv3qced 301 14 cell cell NN cord-306414-2dv3qced 301 15 sequencing sequencing NN cord-306414-2dv3qced 302 1 Identifying identify VBG cord-306414-2dv3qced 302 2 specificity specificity NN cord-306414-2dv3qced 302 3 groups group NNS cord-306414-2dv3qced 302 4 in in IN cord-306414-2dv3qced 302 5 the the DT cord-306414-2dv3qced 302 6 T T NNP cord-306414-2dv3qced 302 7 cell cell NN cord-306414-2dv3qced 302 8 receptor receptor NN cord-306414-2dv3qced 302 9 repertoire repertoire NN cord-306414-2dv3qced 303 1 The the DT cord-306414-2dv3qced 303 2 membrane membrane NN cord-306414-2dv3qced 303 3 protein protein NN cord-306414-2dv3qced 303 4 of of IN cord-306414-2dv3qced 303 5 severe severe JJ cord-306414-2dv3qced 303 6 acute acute JJ cord-306414-2dv3qced 303 7 respiratory respiratory JJ cord-306414-2dv3qced 303 8 syndrome syndrome NN cord-306414-2dv3qced 303 9 coronavirus coronavirus NN cord-306414-2dv3qced 303 10 acts act VBZ cord-306414-2dv3qced 303 11 as as IN cord-306414-2dv3qced 303 12 a a DT cord-306414-2dv3qced 303 13 dominant dominant JJ cord-306414-2dv3qced 303 14 immunogen immunogen NN cord-306414-2dv3qced 303 15 revealed reveal VBN cord-306414-2dv3qced 303 16 by by IN cord-306414-2dv3qced 303 17 a a DT cord-306414-2dv3qced 303 18 clustering clustering NN cord-306414-2dv3qced 303 19 region region NN cord-306414-2dv3qced 303 20 of of IN cord-306414-2dv3qced 303 21 novel novel NN cord-306414-2dv3qced 303 22 functionally functionally RB cord-306414-2dv3qced 303 23 and and CC cord-306414-2dv3qced 303 24 structurally structurally RB cord-306414-2dv3qced 303 25 defined define VBN cord-306414-2dv3qced 303 26 cytotoxic cytotoxic JJ cord-306414-2dv3qced 303 27 T t NN cord-306414-2dv3qced 303 28 - - HYPH cord-306414-2dv3qced 303 29 lymphocyte lymphocyte NN cord-306414-2dv3qced 303 30 epitopes epitope NNS cord-306414-2dv3qced 304 1 Immunosequencing immunosequencing NN cord-306414-2dv3qced 304 2 identifies identify VBZ cord-306414-2dv3qced 304 3 signatures signature NNS cord-306414-2dv3qced 304 4 of of IN cord-306414-2dv3qced 304 5 cytomegalovirus cytomegalovirus NN cord-306414-2dv3qced 304 6 exposure exposure NN cord-306414-2dv3qced 304 7 history history NN cord-306414-2dv3qced 304 8 and and CC cord-306414-2dv3qced 304 9 HLA HLA NNP cord-306414-2dv3qced 304 10 - - HYPH cord-306414-2dv3qced 304 11 mediated mediate VBN cord-306414-2dv3qced 304 12 effects effect NNS cord-306414-2dv3qced 304 13 on on IN cord-306414-2dv3qced 304 14 the the DT cord-306414-2dv3qced 304 15 T T NNP cord-306414-2dv3qced 304 16 cell cell NN cord-306414-2dv3qced 304 17 repertoire repertoire NN cord-306414-2dv3qced 304 18 Precise precise JJ cord-306414-2dv3qced 304 19 tracking tracking NN cord-306414-2dv3qced 304 20 of of IN cord-306414-2dv3qced 304 21 vaccineresponding vaccineresponde VBG cord-306414-2dv3qced 304 22 T t NN cord-306414-2dv3qced 304 23 cell cell NN cord-306414-2dv3qced 304 24 clones clone NNS cord-306414-2dv3qced 304 25 reveals reveal VBZ cord-306414-2dv3qced 304 26 convergent convergent JJ cord-306414-2dv3qced 304 27 and and CC cord-306414-2dv3qced 304 28 personalized personalized JJ cord-306414-2dv3qced 304 29 response response NN cord-306414-2dv3qced 304 30 in in IN cord-306414-2dv3qced 304 31 identical identical JJ cord-306414-2dv3qced 304 32 twins twin NNS cord-306414-2dv3qced 304 33 Identifying identify VBG cord-306414-2dv3qced 304 34 and and CC cord-306414-2dv3qced 304 35 tracking track VBG cord-306414-2dv3qced 304 36 low low JJ cord-306414-2dv3qced 304 37 - - HYPH cord-306414-2dv3qced 304 38 frequency frequency NN cord-306414-2dv3qced 304 39 virus virus NN cord-306414-2dv3qced 304 40 - - HYPH cord-306414-2dv3qced 304 41 specific specific JJ cord-306414-2dv3qced 304 42 TCR TCR NNP cord-306414-2dv3qced 304 43 clonotypes clonotype NNS cord-306414-2dv3qced 304 44 using use VBG cord-306414-2dv3qced 304 45 high high JJ cord-306414-2dv3qced 304 46 - - HYPH cord-306414-2dv3qced 304 47 throughput throughput NN cord-306414-2dv3qced 304 48 sequencing sequence VBG cord-306414-2dv3qced 304 49 CDR3 CDR3 NNP cord-306414-2dv3qced 304 50 motif motif NN cord-306414-2dv3qced 304 51 generation generation NN cord-306414-2dv3qced 304 52 and and CC cord-306414-2dv3qced 304 53 selection selection NN cord-306414-2dv3qced 304 54 in in IN cord-306414-2dv3qced 304 55 the the DT cord-306414-2dv3qced 304 56 BV19-utilizing bv19-utilize VBG cord-306414-2dv3qced 304 57 subset subset NN cord-306414-2dv3qced 304 58 of of IN cord-306414-2dv3qced 304 59 the the DT cord-306414-2dv3qced 304 60 human human JJ cord-306414-2dv3qced 304 61 CD8 CD8 NNP cord-306414-2dv3qced 304 62 T T NNP cord-306414-2dv3qced 304 63 cell cell NN cord-306414-2dv3qced 304 64 repertoire repertoire NN cord-306414-2dv3qced 304 65 Lymphocytes lymphocyte VBZ cord-306414-2dv3qced 304 66 transiently transiently RB cord-306414-2dv3qced 304 67 expressing express VBG cord-306414-2dv3qced 304 68 virusspecific virusspecific NNP cord-306414-2dv3qced 304 69 T T NNP cord-306414-2dv3qced 304 70 cell cell NN cord-306414-2dv3qced 304 71 receptors receptor NNS cord-306414-2dv3qced 304 72 reduce reduce VBP cord-306414-2dv3qced 304 73 hepatitis hepatitis NN cord-306414-2dv3qced 304 74 B b NN cord-306414-2dv3qced 304 75 virus virus NN cord-306414-2dv3qced 304 76 infection infection NN cord-306414-2dv3qced 304 77 Hepatitis Hepatitis NNP cord-306414-2dv3qced 304 78 C C NNP cord-306414-2dv3qced 304 79 virus virus NN cord-306414-2dv3qced 304 80 - - HYPH cord-306414-2dv3qced 304 81 specific specific JJ cord-306414-2dv3qced 304 82 T T NNP cord-306414-2dv3qced 304 83 cell cell NN cord-306414-2dv3qced 304 84 receptor receptor NN cord-306414-2dv3qced 304 85 mRNA mrna NN cord-306414-2dv3qced 304 86 - - HYPH cord-306414-2dv3qced 304 87 engineered engineer VBN cord-306414-2dv3qced 304 88 human human NN cord-306414-2dv3qced 304 89 T t NN cord-306414-2dv3qced 304 90 cells cell NNS cord-306414-2dv3qced 304 91 : : : cord-306414-2dv3qced 304 92 impact impact NN cord-306414-2dv3qced 304 93 of of IN cord-306414-2dv3qced 304 94 antigen antigen NN cord-306414-2dv3qced 304 95 specificity specificity NN cord-306414-2dv3qced 304 96 on on IN cord-306414-2dv3qced 304 97 functional functional JJ cord-306414-2dv3qced 304 98 properties property NNS cord-306414-2dv3qced 305 1 Engineering Engineering NNP cord-306414-2dv3qced 305 2 T t CD cord-306414-2dv3qced 305 3 cells cell NNS cord-306414-2dv3qced 305 4 specific specific JJ cord-306414-2dv3qced 305 5 for for IN cord-306414-2dv3qced 305 6 a a DT cord-306414-2dv3qced 305 7 dominant dominant JJ cord-306414-2dv3qced 305 8 severe severe JJ cord-306414-2dv3qced 305 9 acute acute JJ cord-306414-2dv3qced 305 10 respiratory respiratory JJ cord-306414-2dv3qced 305 11 syndrome syndrome NN cord-306414-2dv3qced 305 12 coronavirus coronavirus NN cord-306414-2dv3qced 306 1 CD8 CD8 NNP cord-306414-2dv3qced 306 2 T T NNP cord-306414-2dv3qced 306 3 cell cell NN cord-306414-2dv3qced 306 4 epitope epitope NN cord-306414-2dv3qced 306 5 T T NNP cord-306414-2dv3qced 306 6 cell cell NN cord-306414-2dv3qced 306 7 receptor receptor NN cord-306414-2dv3qced 306 8 recognition recognition NN cord-306414-2dv3qced 306 9 motifs motif NNS cord-306414-2dv3qced 306 10 govern govern VBP cord-306414-2dv3qced 306 11 immune immune JJ cord-306414-2dv3qced 306 12 escape escape NN cord-306414-2dv3qced 306 13 patterns pattern NNS cord-306414-2dv3qced 306 14 in in IN cord-306414-2dv3qced 306 15 acute acute JJ cord-306414-2dv3qced 306 16 SIV SIV NNP cord-306414-2dv3qced 306 17 infection infection NN cord-306414-2dv3qced 307 1 Large large JJ cord-306414-2dv3qced 307 2 TCR TCR NNP cord-306414-2dv3qced 307 3 diversity diversity NN cord-306414-2dv3qced 307 4 of of IN cord-306414-2dv3qced 307 5 virus virus NN cord-306414-2dv3qced 307 6 - - HYPH cord-306414-2dv3qced 307 7 specific specific JJ cord-306414-2dv3qced 307 8 CD8 CD8 NNP cord-306414-2dv3qced 307 9 T T NNP cord-306414-2dv3qced 307 10 cells cell NNS cord-306414-2dv3qced 307 11 provides provide VBZ cord-306414-2dv3qced 307 12 the the DT cord-306414-2dv3qced 307 13 mechanistic mechanistic JJ cord-306414-2dv3qced 307 14 basis basis NN cord-306414-2dv3qced 307 15 for for IN cord-306414-2dv3qced 307 16 massive massive JJ cord-306414-2dv3qced 307 17 TCR TCR NNP cord-306414-2dv3qced 307 18 renewal renewal NN cord-306414-2dv3qced 307 19 after after IN cord-306414-2dv3qced 307 20 antigen antigen NN cord-306414-2dv3qced 307 21 exposure exposure NN cord-306414-2dv3qced 307 22 Complete Complete NNP cord-306414-2dv3qced 307 23 but but CC cord-306414-2dv3qced 307 24 curtailed curtail VBD cord-306414-2dv3qced 307 25 T t NN cord-306414-2dv3qced 307 26 - - HYPH cord-306414-2dv3qced 307 27 cell cell NN cord-306414-2dv3qced 307 28 response response NN cord-306414-2dv3qced 307 29 to to IN cord-306414-2dv3qced 307 30 very very RB cord-306414-2dv3qced 307 31 low low JJ cord-306414-2dv3qced 307 32 - - HYPH cord-306414-2dv3qced 307 33 affinity affinity NN cord-306414-2dv3qced 307 34 antigen antigen NN cord-306414-2dv3qced 307 35 Avidity avidity NN cord-306414-2dv3qced 307 36 for for IN cord-306414-2dv3qced 307 37 antigen antigen NN cord-306414-2dv3qced 307 38 shapes shape NNS cord-306414-2dv3qced 307 39 clonal clonal JJ cord-306414-2dv3qced 307 40 dominance dominance NN cord-306414-2dv3qced 307 41 in in IN cord-306414-2dv3qced 307 42 CD8 CD8 NNP cord-306414-2dv3qced 307 43 + + CC cord-306414-2dv3qced 307 44 T T NNP cord-306414-2dv3qced 307 45 cell cell NN cord-306414-2dv3qced 307 46 populations population NNS cord-306414-2dv3qced 307 47 specific specific JJ cord-306414-2dv3qced 307 48 for for IN cord-306414-2dv3qced 307 49 persistent persistent JJ cord-306414-2dv3qced 307 50 DNA dna NN cord-306414-2dv3qced 307 51 viruses virus NNS cord-306414-2dv3qced 307 52 Design Design NNP cord-306414-2dv3qced 307 53 of of IN cord-306414-2dv3qced 307 54 a a DT cord-306414-2dv3qced 307 55 multi multi JJ cord-306414-2dv3qced 307 56 - - JJ cord-306414-2dv3qced 307 57 center center JJ cord-306414-2dv3qced 307 58 immunophenotyping immunophenotyping NN cord-306414-2dv3qced 307 59 analysis analysis NN cord-306414-2dv3qced 307 60 of of IN cord-306414-2dv3qced 307 61 peripheral peripheral JJ cord-306414-2dv3qced 307 62 blood blood NN cord-306414-2dv3qced 307 63 , , , cord-306414-2dv3qced 307 64 sputum sputum NN cord-306414-2dv3qced 307 65 and and CC cord-306414-2dv3qced 307 66 bronchoalveolar bronchoalveolar JJ cord-306414-2dv3qced 307 67 lavage lavage NN cord-306414-2dv3qced 307 68 fluid fluid NN cord-306414-2dv3qced 307 69 in in IN cord-306414-2dv3qced 307 70 the the DT cord-306414-2dv3qced 307 71 Subpopulations Subpopulations NNPS cord-306414-2dv3qced 307 72 and and CC cord-306414-2dv3qced 307 73 Intermediate Intermediate NNP cord-306414-2dv3qced 307 74 Outcome Outcome NNP cord-306414-2dv3qced 307 75 Measures measure NNS cord-306414-2dv3qced 307 76 in in IN cord-306414-2dv3qced 307 77 COPD COPD NNP cord-306414-2dv3qced 307 78 Study Study NNP cord-306414-2dv3qced 307 79 ( ( -LRB- cord-306414-2dv3qced 307 80 SPIROMICS SPIROMICS NNP cord-306414-2dv3qced 307 81 ) ) -RRB- cord-306414-2dv3qced 308 1 Practical practical JJ cord-306414-2dv3qced 308 2 guidance guidance NN cord-306414-2dv3qced 308 3 for for IN cord-306414-2dv3qced 308 4 clinical clinical JJ cord-306414-2dv3qced 308 5 microbiology microbiology NN cord-306414-2dv3qced 308 6 laboratories laboratory NNS cord-306414-2dv3qced 308 7 : : : cord-306414-2dv3qced 308 8 viruses virus NNS cord-306414-2dv3qced 308 9 causing cause VBG cord-306414-2dv3qced 308 10 acute acute JJ cord-306414-2dv3qced 308 11 respiratory respiratory JJ cord-306414-2dv3qced 308 12 tract tract NN cord-306414-2dv3qced 308 13 infections infection NNS cord-306414-2dv3qced 308 14 Overview Overview NNP cord-306414-2dv3qced 308 15 of of IN cord-306414-2dv3qced 308 16 methodologies methodology NNS cord-306414-2dv3qced 308 17 for for IN cord-306414-2dv3qced 308 18 T t NN cord-306414-2dv3qced 308 19 - - HYPH cord-306414-2dv3qced 308 20 cell cell NN cord-306414-2dv3qced 308 21 receptor receptor NN cord-306414-2dv3qced 308 22 repertoire repertoire NN cord-306414-2dv3qced 308 23 analysis analysis NN cord-306414-2dv3qced 308 24 Evaluation Evaluation NNP cord-306414-2dv3qced 308 25 of of IN cord-306414-2dv3qced 308 26 bias bias NN cord-306414-2dv3qced 308 27 associated associate VBN cord-306414-2dv3qced 308 28 with with IN cord-306414-2dv3qced 308 29 highmultiplex highmultiplex NN cord-306414-2dv3qced 308 30 , , , cord-306414-2dv3qced 308 31 target target NN cord-306414-2dv3qced 308 32 - - HYPH cord-306414-2dv3qced 308 33 specific specific JJ cord-306414-2dv3qced 308 34 pre pre JJ cord-306414-2dv3qced 308 35 - - JJ cord-306414-2dv3qced 308 36 amplification amplification JJ cord-306414-2dv3qced 308 37 High high JJ cord-306414-2dv3qced 308 38 - - HYPH cord-306414-2dv3qced 308 39 throughput throughput NN cord-306414-2dv3qced 308 40 identification identification NN cord-306414-2dv3qced 308 41 of of IN cord-306414-2dv3qced 308 42 antigenspecific antigenspecific NNP cord-306414-2dv3qced 308 43 TCRs tcr NNS cord-306414-2dv3qced 308 44 by by IN cord-306414-2dv3qced 308 45 TCR TCR NNP cord-306414-2dv3qced 308 46 gene gene NN cord-306414-2dv3qced 308 47 capture capture NN cord-306414-2dv3qced 308 48 Preparing prepare VBG cord-306414-2dv3qced 308 49 unbiased unbiased JJ cord-306414-2dv3qced 308 50 T t NN cord-306414-2dv3qced 308 51 - - HYPH cord-306414-2dv3qced 308 52 cell cell NN cord-306414-2dv3qced 308 53 receptor receptor NN cord-306414-2dv3qced 308 54 and and CC cord-306414-2dv3qced 308 55 antibody antibody NN cord-306414-2dv3qced 308 56 cDNA cdna NN cord-306414-2dv3qced 308 57 libraries library NNS cord-306414-2dv3qced 308 58 for for IN cord-306414-2dv3qced 308 59 the the DT cord-306414-2dv3qced 308 60 deep deep JJ cord-306414-2dv3qced 308 61 next next JJ cord-306414-2dv3qced 308 62 generation generation NN cord-306414-2dv3qced 308 63 sequencing sequencing NN cord-306414-2dv3qced 308 64 profiling profile VBG cord-306414-2dv3qced 308 65 Rapid rapid JJ cord-306414-2dv3qced 308 66 amplification amplification NN cord-306414-2dv3qced 308 67 of of IN cord-306414-2dv3qced 308 68 5′ 5′ CD cord-306414-2dv3qced 308 69 complementary complementary JJ cord-306414-2dv3qced 308 70 DNA dna NN cord-306414-2dv3qced 308 71 ends end NNS cord-306414-2dv3qced 308 72 ( ( -LRB- cord-306414-2dv3qced 308 73 5′ 5′ CD cord-306414-2dv3qced 308 74 RACE race NN cord-306414-2dv3qced 308 75 ) ) -RRB- cord-306414-2dv3qced 309 1 Sequence sequence NN cord-306414-2dv3qced 309 2 analysis analysis NN cord-306414-2dv3qced 309 3 of of IN cord-306414-2dv3qced 309 4 T t NN cord-306414-2dv3qced 309 5 - - HYPH cord-306414-2dv3qced 309 6 cell cell NN cord-306414-2dv3qced 309 7 repertoires repertoire NNS cord-306414-2dv3qced 309 8 in in IN cord-306414-2dv3qced 309 9 health health NN cord-306414-2dv3qced 309 10 and and CC cord-306414-2dv3qced 309 11 disease disease NN cord-306414-2dv3qced 309 12 MiXCR MiXCR NNP cord-306414-2dv3qced 309 13 : : : cord-306414-2dv3qced 309 14 software software NN cord-306414-2dv3qced 309 15 for for IN cord-306414-2dv3qced 309 16 comprehensive comprehensive JJ cord-306414-2dv3qced 309 17 adaptive adaptive JJ cord-306414-2dv3qced 309 18 immunity immunity NN cord-306414-2dv3qced 309 19 profiling profiling NN cord-306414-2dv3qced 310 1 VDJtools vdjtool NNS cord-306414-2dv3qced 310 2 : : : cord-306414-2dv3qced 311 1 unifying unify VBG cord-306414-2dv3qced 311 2 post post NN cord-306414-2dv3qced 311 3 - - NN cord-306414-2dv3qced 311 4 analysis analysis NN cord-306414-2dv3qced 311 5 of of IN cord-306414-2dv3qced 311 6 T T NNP cord-306414-2dv3qced 311 7 cell cell NN cord-306414-2dv3qced 311 8 receptor receptor NN cord-306414-2dv3qced 311 9 repertoires repertoire NNS cord-306414-2dv3qced 312 1 Longitudinal longitudinal JJ cord-306414-2dv3qced 312 2 high high JJ cord-306414-2dv3qced 312 3 - - HYPH cord-306414-2dv3qced 312 4 throughput throughput NN cord-306414-2dv3qced 312 5 TCR TCR NNP cord-306414-2dv3qced 312 6 repertoire repertoire NN cord-306414-2dv3qced 312 7 profiling profiling NN cord-306414-2dv3qced 312 8 reveals reveal VBZ cord-306414-2dv3qced 312 9 the the DT cord-306414-2dv3qced 312 10 dynamics dynamic NNS cord-306414-2dv3qced 312 11 of of IN cord-306414-2dv3qced 312 12 T T NNP cord-306414-2dv3qced 312 13 cell cell NN cord-306414-2dv3qced 312 14 memory memory NN cord-306414-2dv3qced 312 15 formation formation NN cord-306414-2dv3qced 312 16 after after IN cord-306414-2dv3qced 312 17 mild mild JJ cord-306414-2dv3qced 312 18 COVID-19 covid-19 CD cord-306414-2dv3qced 312 19 infection infection NN cord-306414-2dv3qced 313 1 We -PRON- PRP cord-306414-2dv3qced 313 2 acknowledge acknowledge VBP cord-306414-2dv3qced 313 3 the the DT cord-306414-2dv3qced 313 4 University University NNP cord-306414-2dv3qced 313 5 of of IN cord-306414-2dv3qced 313 6 Southern Southern NNP cord-306414-2dv3qced 313 7 California California NNP cord-306414-2dv3qced 313 8 , , , cord-306414-2dv3qced 313 9 School School NNP cord-306414-2dv3qced 313 10 of of IN cord-306414-2dv3qced 313 11 Pharmacy Pharmacy NNP cord-306414-2dv3qced 313 12 Seed Seed NNP cord-306414-2dv3qced 313 13 Fund Fund NNP cord-306414-2dv3qced 313 14 , , , cord-306414-2dv3qced 313 15 and and CC cord-306414-2dv3qced 313 16 The the DT cord-306414-2dv3qced 313 17 Norris Norris NNP cord-306414-2dv3qced 313 18 Cancer Cancer NNP cord-306414-2dv3qced 313 19 Center Center NNP cord-306414-2dv3qced 313 20 pilot pilot NN cord-306414-2dv3qced 313 21 funding funding NN cord-306414-2dv3qced 313 22 that that WDT cord-306414-2dv3qced 313 23 support support VBP cord-306414-2dv3qced 313 24 HA HA NNP cord-306414-2dv3qced 313 25 research research NN cord-306414-2dv3qced 313 26 effort effort NN cord-306414-2dv3qced 313 27 . . . cord-306414-2dv3qced 314 1 All all DT cord-306414-2dv3qced 314 2 figures figure NNS cord-306414-2dv3qced 314 3 were be VBD cord-306414-2dv3qced 314 4 made make VBN cord-306414-2dv3qced 314 5 with with IN cord-306414-2dv3qced 314 6 BioRender BioRender NNP cord-306414-2dv3qced 314 7 ( ( -LRB- cord-306414-2dv3qced 314 8 https://biorender.com/ https://biorender.com/ NN cord-306414-2dv3qced 314 9 ) ) -RRB- cord-306414-2dv3qced 314 10 . . . cord-306414-2dv3qced 314 11 _SP