id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
work_c2lz4j5lkbafbijjezlchgwxom	Alexander Safatli	Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and search space heuristics	2015	8	.pdf	application/pdf	3132	427	26	and likelihood methods, the construction of a tree search space graph, and the Keywords Phylogenetic, Python, Heuristic, Alignment, Maximum likelihood, Library, intended for heuristic search and analysis of the phylogenetic tree search space, as well as How to cite this article Safatli and Blouin (2015), Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and large number of other classes and supports tree scoring using standard phylogenetic tree rearrangement, heuristic exploration, and landscape construction. landscape landscape Represents a phylogenetic tree search space, modelled as a graph. landscapeWriter landscapeWriter Allows one to write a landscape object to a file, including alignment and tree information. Exploring the space is done by performing rearrangements on trees as topology Performing a heuristic search of the combinatorial space comprised by a phylogenetic Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and search space heuristics Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and search space heuristics	./cache/work_c2lz4j5lkbafbijjezlchgwxom.pdf	./txt/work_c2lz4j5lkbafbijjezlchgwxom.txt