id sid tid token lemma pos cord-004222-z4butywi 1 1 key key JJ cord-004222-z4butywi 1 2 : : : cord-004222-z4butywi 1 3 cord-004222-z4butywi cord-004222-z4butywi NN cord-004222-z4butywi 1 4 authors author NNS cord-004222-z4butywi 1 5 : : : cord-004222-z4butywi 1 6 Joyce Joyce NNP cord-004222-z4butywi 1 7 , , , cord-004222-z4butywi 1 8 Collin Collin NNP cord-004222-z4butywi 1 9 ; ; : cord-004222-z4butywi 1 10 Burton Burton NNP cord-004222-z4butywi 1 11 , , , cord-004222-z4butywi 1 12 Dennis Dennis NNP cord-004222-z4butywi 1 13 R. R. NNP cord-004222-z4butywi 1 14 ; ; : cord-004222-z4butywi 2 1 Briney Briney NNP cord-004222-z4butywi 2 2 , , , cord-004222-z4butywi 2 3 Bryan Bryan NNP cord-004222-z4butywi 2 4 title title NN cord-004222-z4butywi 2 5 : : : cord-004222-z4butywi 2 6 Comparisons comparison NNS cord-004222-z4butywi 2 7 of of IN cord-004222-z4butywi 2 8 the the DT cord-004222-z4butywi 2 9 antibody antibody NN cord-004222-z4butywi 2 10 repertoires repertoire NNS cord-004222-z4butywi 2 11 of of IN cord-004222-z4butywi 2 12 a a DT cord-004222-z4butywi 2 13 humanized humanize VBN cord-004222-z4butywi 2 14 rodent rodent NN cord-004222-z4butywi 2 15 and and CC cord-004222-z4butywi 2 16 humans human NNS cord-004222-z4butywi 2 17 by by IN cord-004222-z4butywi 2 18 high high JJ cord-004222-z4butywi 2 19 throughput throughput NN cord-004222-z4butywi 2 20 sequencing sequencing NN cord-004222-z4butywi 2 21 date date NN cord-004222-z4butywi 2 22 : : : cord-004222-z4butywi 2 23 2020 2020 CD cord-004222-z4butywi 2 24 - - HYPH cord-004222-z4butywi 2 25 01 01 CD cord-004222-z4butywi 2 26 - - HYPH cord-004222-z4butywi 2 27 24 24 CD cord-004222-z4butywi 2 28 journal journal NN cord-004222-z4butywi 2 29 : : : cord-004222-z4butywi 3 1 Sci Sci NNP cord-004222-z4butywi 3 2 Rep Rep NNP cord-004222-z4butywi 3 3 DOI DOI NNP cord-004222-z4butywi 3 4 : : : cord-004222-z4butywi 4 1 10.1038 10.1038 CD cord-004222-z4butywi 4 2 / / SYM cord-004222-z4butywi 4 3 s41598 s41598 CD cord-004222-z4butywi 4 4 - - HYPH cord-004222-z4butywi 4 5 020 020 CD cord-004222-z4butywi 4 6 - - HYPH cord-004222-z4butywi 4 7 57764 57764 CD cord-004222-z4butywi 4 8 - - SYM cord-004222-z4butywi 4 9 7 7 CD cord-004222-z4butywi 4 10 sha sha NNP cord-004222-z4butywi 4 11 : : : cord-004222-z4butywi 4 12 36ef2d1a30ab17d24e9c11bbd208ed37638cc1d5 36ef2d1a30ab17d24e9c11bbd208ed37638cc1d5 CD cord-004222-z4butywi 4 13 doc_id doc_id CD cord-004222-z4butywi 4 14 : : : cord-004222-z4butywi 4 15 4222 4222 CD cord-004222-z4butywi 4 16 cord_uid cord_uid NNS cord-004222-z4butywi 4 17 : : : cord-004222-z4butywi 4 18 z4butywi z4butywi NN cord-004222-z4butywi 5 1 The the DT cord-004222-z4butywi 5 2 humanization humanization NN cord-004222-z4butywi 5 3 of of IN cord-004222-z4butywi 5 4 animal animal NN cord-004222-z4butywi 5 5 model model NN cord-004222-z4butywi 5 6 immune immune JJ cord-004222-z4butywi 5 7 systems system NNS cord-004222-z4butywi 5 8 by by IN cord-004222-z4butywi 5 9 genetic genetic JJ cord-004222-z4butywi 5 10 engineering engineering NN cord-004222-z4butywi 5 11 has have VBZ cord-004222-z4butywi 5 12 shown show VBN cord-004222-z4butywi 5 13 great great JJ cord-004222-z4butywi 5 14 promise promise NN cord-004222-z4butywi 5 15 for for IN cord-004222-z4butywi 5 16 antibody antibody NN cord-004222-z4butywi 5 17 discovery discovery NN cord-004222-z4butywi 5 18 , , , cord-004222-z4butywi 5 19 tolerance tolerance NN cord-004222-z4butywi 5 20 studies study NNS cord-004222-z4butywi 5 21 and and CC cord-004222-z4butywi 5 22 for for IN cord-004222-z4butywi 5 23 the the DT cord-004222-z4butywi 5 24 evaluation evaluation NN cord-004222-z4butywi 5 25 of of IN cord-004222-z4butywi 5 26 vaccines vaccine NNS cord-004222-z4butywi 5 27 . . . cord-004222-z4butywi 6 1 Assessment assessment NN cord-004222-z4butywi 6 2 of of IN cord-004222-z4butywi 6 3 the the DT cord-004222-z4butywi 6 4 baseline baseline JJ cord-004222-z4butywi 6 5 antibody antibody NN cord-004222-z4butywi 6 6 repertoires repertoire NNS cord-004222-z4butywi 6 7 of of IN cord-004222-z4butywi 6 8 unimmunized unimmunized JJ cord-004222-z4butywi 6 9 model model NN cord-004222-z4butywi 6 10 animals animal NNS cord-004222-z4butywi 6 11 will will MD cord-004222-z4butywi 6 12 be be VB cord-004222-z4butywi 6 13 useful useful JJ cord-004222-z4butywi 6 14 as as IN cord-004222-z4butywi 6 15 a a DT cord-004222-z4butywi 6 16 benchmark benchmark NN cord-004222-z4butywi 6 17 for for IN cord-004222-z4butywi 6 18 future future JJ cord-004222-z4butywi 6 19 immunization immunization NN cord-004222-z4butywi 6 20 experiments experiment NNS cord-004222-z4butywi 6 21 . . . cord-004222-z4butywi 7 1 We -PRON- PRP cord-004222-z4butywi 7 2 characterized characterize VBD cord-004222-z4butywi 7 3 the the DT cord-004222-z4butywi 7 4 heavy heavy JJ cord-004222-z4butywi 7 5 chain chain NN cord-004222-z4butywi 7 6 and and CC cord-004222-z4butywi 7 7 kappa kappa NN cord-004222-z4butywi 7 8 light light NNP cord-004222-z4butywi 7 9 chain chain NN cord-004222-z4butywi 7 10 antibody antibody NN cord-004222-z4butywi 7 11 repertoires repertoire NNS cord-004222-z4butywi 7 12 of of IN cord-004222-z4butywi 7 13 a a DT cord-004222-z4butywi 7 14 model model NN cord-004222-z4butywi 7 15 animal animal NN cord-004222-z4butywi 7 16 , , , cord-004222-z4butywi 7 17 the the DT cord-004222-z4butywi 7 18 OmniRat OmniRat NNP cord-004222-z4butywi 7 19 , , , cord-004222-z4butywi 7 20 by by IN cord-004222-z4butywi 7 21 high high JJ cord-004222-z4butywi 7 22 throughput throughput NN cord-004222-z4butywi 7 23 antibody antibody NN cord-004222-z4butywi 7 24 sequencing sequencing NN cord-004222-z4butywi 7 25 and and CC cord-004222-z4butywi 7 26 made make VBD cord-004222-z4butywi 7 27 use use NN cord-004222-z4butywi 7 28 of of IN cord-004222-z4butywi 7 29 two two CD cord-004222-z4butywi 7 30 novel novel JJ cord-004222-z4butywi 7 31 datasets dataset NNS cord-004222-z4butywi 7 32 for for IN cord-004222-z4butywi 7 33 comparison comparison NN cord-004222-z4butywi 7 34 to to IN cord-004222-z4butywi 7 35 human human JJ cord-004222-z4butywi 7 36 repertoires repertoire NNS cord-004222-z4butywi 7 37 . . . cord-004222-z4butywi 8 1 Intra intra JJ cord-004222-z4butywi 8 2 - - JJ cord-004222-z4butywi 8 3 animal animal JJ cord-004222-z4butywi 8 4 and and CC cord-004222-z4butywi 8 5 inter inter JJ cord-004222-z4butywi 8 6 - - JJ cord-004222-z4butywi 8 7 animal animal JJ cord-004222-z4butywi 8 8 repertoire repertoire NN cord-004222-z4butywi 8 9 comparisons comparison NNS cord-004222-z4butywi 8 10 reveal reveal VBP cord-004222-z4butywi 8 11 a a DT cord-004222-z4butywi 8 12 high high JJ cord-004222-z4butywi 8 13 level level NN cord-004222-z4butywi 8 14 of of IN cord-004222-z4butywi 8 15 conservation conservation NN cord-004222-z4butywi 8 16 in in IN cord-004222-z4butywi 8 17 antibody antibody NN cord-004222-z4butywi 8 18 diversity diversity NN cord-004222-z4butywi 8 19 between between IN cord-004222-z4butywi 8 20 the the DT cord-004222-z4butywi 8 21 lymph lymph NN cord-004222-z4butywi 8 22 node node NN cord-004222-z4butywi 8 23 and and CC cord-004222-z4butywi 8 24 spleen spleen NNS cord-004222-z4butywi 8 25 and and CC cord-004222-z4butywi 8 26 between between IN cord-004222-z4butywi 8 27 members member NNS cord-004222-z4butywi 8 28 of of IN cord-004222-z4butywi 8 29 the the DT cord-004222-z4butywi 8 30 species specie NNS cord-004222-z4butywi 8 31 . . . cord-004222-z4butywi 9 1 Multiple multiple JJ cord-004222-z4butywi 9 2 differences difference NNS cord-004222-z4butywi 9 3 were be VBD cord-004222-z4butywi 9 4 found find VBN cord-004222-z4butywi 9 5 in in IN cord-004222-z4butywi 9 6 both both CC cord-004222-z4butywi 9 7 the the DT cord-004222-z4butywi 9 8 heavy heavy JJ cord-004222-z4butywi 9 9 and and CC cord-004222-z4butywi 9 10 kappa kappa NN cord-004222-z4butywi 9 11 chain chain NN cord-004222-z4butywi 9 12 repertoires repertoire NNS cord-004222-z4butywi 9 13 between between IN cord-004222-z4butywi 9 14 OmniRats OmniRats NNP cord-004222-z4butywi 9 15 and and CC cord-004222-z4butywi 9 16 humans human NNS cord-004222-z4butywi 9 17 including include VBG cord-004222-z4butywi 9 18 gene gene NN cord-004222-z4butywi 9 19 segment segment NN cord-004222-z4butywi 9 20 usage usage NN cord-004222-z4butywi 9 21 , , , cord-004222-z4butywi 9 22 CDR3 CDR3 NNP cord-004222-z4butywi 9 23 length length NN cord-004222-z4butywi 9 24 distributions distribution NNS cord-004222-z4butywi 9 25 , , , cord-004222-z4butywi 9 26 class class NN cord-004222-z4butywi 9 27 switch switch NN cord-004222-z4butywi 9 28 recombination recombination NN cord-004222-z4butywi 9 29 , , , cord-004222-z4butywi 9 30 somatic somatic JJ cord-004222-z4butywi 9 31 hypermutation hypermutation NN cord-004222-z4butywi 9 32 levels level NNS cord-004222-z4butywi 9 33 and and CC cord-004222-z4butywi 9 34 in in IN cord-004222-z4butywi 9 35 features feature NNS cord-004222-z4butywi 9 36 of of IN cord-004222-z4butywi 9 37 V(D)J V(D)J NNP cord-004222-z4butywi 9 38 recombination recombination NN cord-004222-z4butywi 9 39 . . . cord-004222-z4butywi 10 1 The the DT cord-004222-z4butywi 10 2 Inference Inference NNP cord-004222-z4butywi 10 3 and and CC cord-004222-z4butywi 10 4 Generation Generation NNP cord-004222-z4butywi 10 5 of of IN cord-004222-z4butywi 10 6 Repertoires Repertoires NNPS cord-004222-z4butywi 10 7 ( ( -LRB- cord-004222-z4butywi 10 8 IGoR IGoR NNP cord-004222-z4butywi 10 9 ) ) -RRB- cord-004222-z4butywi 10 10 software software NN cord-004222-z4butywi 10 11 tool tool NN cord-004222-z4butywi 10 12 was be VBD cord-004222-z4butywi 10 13 used use VBN cord-004222-z4butywi 10 14 to to TO cord-004222-z4butywi 10 15 model model VB cord-004222-z4butywi 10 16 recombination recombination NN cord-004222-z4butywi 10 17 in in IN cord-004222-z4butywi 10 18 VH VH NNP cord-004222-z4butywi 10 19 regions region NNS cord-004222-z4butywi 10 20 which which WDT cord-004222-z4butywi 10 21 allowed allow VBD cord-004222-z4butywi 10 22 for for IN cord-004222-z4butywi 10 23 the the DT cord-004222-z4butywi 10 24 quantification quantification NN cord-004222-z4butywi 10 25 of of IN cord-004222-z4butywi 10 26 some some DT cord-004222-z4butywi 10 27 of of IN cord-004222-z4butywi 10 28 these these DT cord-004222-z4butywi 10 29 differences difference NNS cord-004222-z4butywi 10 30 . . . cord-004222-z4butywi 11 1 Diversity diversity NN cord-004222-z4butywi 11 2 estimates estimate NNS cord-004222-z4butywi 11 3 of of IN cord-004222-z4butywi 11 4 the the DT cord-004222-z4butywi 11 5 OmniRat OmniRat NNP cord-004222-z4butywi 11 6 heavy heavy JJ cord-004222-z4butywi 11 7 chain chain NN cord-004222-z4butywi 11 8 repertoires repertoire NNS cord-004222-z4butywi 11 9 almost almost RB cord-004222-z4butywi 11 10 reached reach VBD cord-004222-z4butywi 11 11 that that DT cord-004222-z4butywi 11 12 of of IN cord-004222-z4butywi 11 13 humans human NNS cord-004222-z4butywi 11 14 , , , cord-004222-z4butywi 11 15 around around IN cord-004222-z4butywi 11 16 two two CD cord-004222-z4butywi 11 17 orders order NNS cord-004222-z4butywi 11 18 of of IN cord-004222-z4butywi 11 19 magnitude magnitude NN cord-004222-z4butywi 11 20 less less JJR cord-004222-z4butywi 11 21 . . . cord-004222-z4butywi 12 1 Despite despite IN cord-004222-z4butywi 12 2 variation variation NN cord-004222-z4butywi 12 3 between between IN cord-004222-z4butywi 12 4 the the DT cord-004222-z4butywi 12 5 species species NN cord-004222-z4butywi 12 6 repertoires repertoire NNS cord-004222-z4butywi 12 7 , , , cord-004222-z4butywi 12 8 a a DT cord-004222-z4butywi 12 9 high high JJ cord-004222-z4butywi 12 10 frequency frequency NN cord-004222-z4butywi 12 11 of of IN cord-004222-z4butywi 12 12 OmniRat omnirat NN cord-004222-z4butywi 12 13 clonotypes clonotype NNS cord-004222-z4butywi 12 14 were be VBD cord-004222-z4butywi 12 15 also also RB cord-004222-z4butywi 12 16 found find VBN cord-004222-z4butywi 12 17 in in IN cord-004222-z4butywi 12 18 the the DT cord-004222-z4butywi 12 19 human human JJ cord-004222-z4butywi 12 20 repertoire repertoire NN cord-004222-z4butywi 12 21 . . . cord-004222-z4butywi 13 1 These these DT cord-004222-z4butywi 13 2 data datum NNS cord-004222-z4butywi 13 3 give give VBP cord-004222-z4butywi 13 4 insights insight NNS cord-004222-z4butywi 13 5 into into IN cord-004222-z4butywi 13 6 the the DT cord-004222-z4butywi 13 7 development development NN cord-004222-z4butywi 13 8 and and CC cord-004222-z4butywi 13 9 selection selection NN cord-004222-z4butywi 13 10 of of IN cord-004222-z4butywi 13 11 humanized humanized JJ cord-004222-z4butywi 13 12 animal animal NN cord-004222-z4butywi 13 13 antibodies antibody NNS cord-004222-z4butywi 13 14 and and CC cord-004222-z4butywi 13 15 provide provide VB cord-004222-z4butywi 13 16 actionable actionable JJ cord-004222-z4butywi 13 17 information information NN cord-004222-z4butywi 13 18 for for IN cord-004222-z4butywi 13 19 use use NN cord-004222-z4butywi 13 20 in in IN cord-004222-z4butywi 13 21 vaccine vaccine NN cord-004222-z4butywi 13 22 studies study NNS cord-004222-z4butywi 13 23 . . . cord-004222-z4butywi 14 1 RAG1 RAG1 NNP cord-004222-z4butywi 14 2 , , , cord-004222-z4butywi 14 3 RAG2 RAG2 NNP cord-004222-z4butywi 14 4 and and CC cord-004222-z4butywi 14 5 Artemis Artemis NNP cord-004222-z4butywi 14 6 ( ( -LRB- cord-004222-z4butywi 14 7 among among IN cord-004222-z4butywi 14 8 others other NNS cord-004222-z4butywi 14 9 ) ) -RRB- cord-004222-z4butywi 14 10 . . . cord-004222-z4butywi 15 1 P p NN cord-004222-z4butywi 15 2 and and CC cord-004222-z4butywi 15 3 N n CD cord-004222-z4butywi 15 4 nucleotides nucleotide NNS cord-004222-z4butywi 15 5 are be VBP cord-004222-z4butywi 15 6 added add VBN cord-004222-z4butywi 15 7 in in IN cord-004222-z4butywi 15 8 the the DT cord-004222-z4butywi 15 9 VH VH NNP cord-004222-z4butywi 15 10 - - HYPH cord-004222-z4butywi 15 11 DH DH NNP cord-004222-z4butywi 15 12 and and CC cord-004222-z4butywi 15 13 DH DH NNP cord-004222-z4butywi 15 14 - - HYPH cord-004222-z4butywi 15 15 JH JH NNP cord-004222-z4butywi 15 16 junctions junction NNS cord-004222-z4butywi 15 17 by by IN cord-004222-z4butywi 15 18 Artemis Artemis NNP cord-004222-z4butywi 15 19 and and CC cord-004222-z4butywi 15 20 TdT tdt NN cord-004222-z4butywi 15 21 , , , cord-004222-z4butywi 15 22 dramatically dramatically RB cord-004222-z4butywi 15 23 increasing increase VBG cord-004222-z4butywi 15 24 sequence sequence NN cord-004222-z4butywi 15 25 diversity diversity NN cord-004222-z4butywi 15 26 . . . cord-004222-z4butywi 16 1 After after IN cord-004222-z4butywi 16 2 successful successful JJ cord-004222-z4butywi 16 3 pairing pairing NN cord-004222-z4butywi 16 4 of of IN cord-004222-z4butywi 16 5 this this DT cord-004222-z4butywi 16 6 newly newly RB cord-004222-z4butywi 16 7 formed form VBN cord-004222-z4butywi 16 8 heavy heavy JJ cord-004222-z4butywi 16 9 chain chain NN cord-004222-z4butywi 16 10 with with IN cord-004222-z4butywi 16 11 surrogate surrogate JJ cord-004222-z4butywi 16 12 light light JJ cord-004222-z4butywi 16 13 chain chain NN cord-004222-z4butywi 16 14 ( ( -LRB- cord-004222-z4butywi 16 15 SLC SLC NNP cord-004222-z4butywi 16 16 ) ) -RRB- cord-004222-z4butywi 16 17 , , , cord-004222-z4butywi 16 18 recombination recombination NN cord-004222-z4butywi 16 19 of of IN cord-004222-z4butywi 16 20 a a DT cord-004222-z4butywi 16 21 light light JJ cord-004222-z4butywi 16 22 chain chain NN cord-004222-z4butywi 16 23 from from IN cord-004222-z4butywi 16 24 V V NNP cord-004222-z4butywi 16 25 and and CC cord-004222-z4butywi 16 26 J J NNP cord-004222-z4butywi 16 27 gene gene NN cord-004222-z4butywi 16 28 segments segment NNS cord-004222-z4butywi 16 29 of of IN cord-004222-z4butywi 16 30 the the DT cord-004222-z4butywi 16 31 kappa kappa NN cord-004222-z4butywi 16 32 or or CC cord-004222-z4butywi 16 33 lambda lambda NN cord-004222-z4butywi 16 34 loci locus NNS cord-004222-z4butywi 16 35 occurs occur VBZ cord-004222-z4butywi 16 36 and and CC cord-004222-z4butywi 16 37 the the DT cord-004222-z4butywi 16 38 B b NN cord-004222-z4butywi 16 39 cell cell NN cord-004222-z4butywi 16 40 swaps swap NNS cord-004222-z4butywi 16 41 the the DT cord-004222-z4butywi 16 42 SLC SLC NNP cord-004222-z4butywi 16 43 for for IN cord-004222-z4butywi 16 44 this this DT cord-004222-z4butywi 16 45 new new JJ cord-004222-z4butywi 16 46 light light JJ cord-004222-z4butywi 16 47 chain chain NN cord-004222-z4butywi 16 48 . . . cord-004222-z4butywi 17 1 Unless unless IN cord-004222-z4butywi 17 2 the the DT cord-004222-z4butywi 17 3 immature immature JJ cord-004222-z4butywi 17 4 B b NN cord-004222-z4butywi 17 5 cell cell NN cord-004222-z4butywi 17 6 is be VBZ cord-004222-z4butywi 17 7 autoreactive autoreactive JJ cord-004222-z4butywi 17 8 or or CC cord-004222-z4butywi 17 9 anergic anergic NN cord-004222-z4butywi 17 10 and and CC cord-004222-z4butywi 17 11 undergoes undergo VBZ cord-004222-z4butywi 17 12 receptor receptor NN cord-004222-z4butywi 17 13 editing editing NN cord-004222-z4butywi 17 14 or or CC cord-004222-z4butywi 17 15 clonal clonal JJ cord-004222-z4butywi 17 16 deletion deletion NN cord-004222-z4butywi 17 17 , , , cord-004222-z4butywi 17 18 it -PRON- PRP cord-004222-z4butywi 17 19 matures mature VBZ cord-004222-z4butywi 17 20 into into IN cord-004222-z4butywi 17 21 a a DT cord-004222-z4butywi 17 22 naïve naïve JJ cord-004222-z4butywi 17 23 B b NN cord-004222-z4butywi 17 24 cell cell NN cord-004222-z4butywi 17 25 and and CC cord-004222-z4butywi 17 26 migrates migrate VBZ cord-004222-z4butywi 17 27 to to IN cord-004222-z4butywi 17 28 the the DT cord-004222-z4butywi 17 29 periphery periphery NN cord-004222-z4butywi 17 30 whereupon whereupon WRB cord-004222-z4butywi 17 31 it -PRON- PRP cord-004222-z4butywi 17 32 can can MD cord-004222-z4butywi 17 33 become become VB cord-004222-z4butywi 17 34 activated activate VBN cord-004222-z4butywi 17 35 by by IN cord-004222-z4butywi 17 36 encountering encounter VBG cord-004222-z4butywi 17 37 antigen antigen NN cord-004222-z4butywi 17 38 and and CC cord-004222-z4butywi 17 39 form form VB cord-004222-z4butywi 17 40 germinal germinal JJ cord-004222-z4butywi 17 41 centers center NNS cord-004222-z4butywi 17 42 with with IN cord-004222-z4butywi 17 43 help help NN cord-004222-z4butywi 17 44 from from IN cord-004222-z4butywi 17 45 T t NN cord-004222-z4butywi 17 46 - - HYPH cord-004222-z4butywi 17 47 cells cell NNS cord-004222-z4butywi 17 48 . . . cord-004222-z4butywi 18 1 Sequence sequence NN cord-004222-z4butywi 18 2 diversity diversity NN cord-004222-z4butywi 18 3 is be VBZ cord-004222-z4butywi 18 4 again again RB cord-004222-z4butywi 18 5 enhanced enhance VBN cord-004222-z4butywi 18 6 in in IN cord-004222-z4butywi 18 7 the the DT cord-004222-z4butywi 18 8 germinal germinal JJ cord-004222-z4butywi 18 9 center center NN cord-004222-z4butywi 18 10 by by IN cord-004222-z4butywi 18 11 somatic somatic JJ cord-004222-z4butywi 18 12 hypermutation hypermutation NN cord-004222-z4butywi 18 13 ( ( -LRB- cord-004222-z4butywi 18 14 SHM SHM NNP cord-004222-z4butywi 18 15 ) ) -RRB- cord-004222-z4butywi 18 16 and/or and/or CC cord-004222-z4butywi 18 17 class class NN cord-004222-z4butywi 18 18 switch switch NN cord-004222-z4butywi 18 19 recombination recombination NN cord-004222-z4butywi 18 20 ( ( -LRB- cord-004222-z4butywi 18 21 CSR CSR NNP cord-004222-z4butywi 18 22 ) ) -RRB- cord-004222-z4butywi 18 23 , , , cord-004222-z4butywi 18 24 two two CD cord-004222-z4butywi 18 25 processes process NNS cord-004222-z4butywi 18 26 that that WDT cord-004222-z4butywi 18 27 depend depend VBP cord-004222-z4butywi 18 28 on on IN cord-004222-z4butywi 18 29 activation activation NN cord-004222-z4butywi 18 30 induced induce VBN cord-004222-z4butywi 18 31 cytidine cytidine NNP cord-004222-z4butywi 18 32 deaminase deaminase NNP cord-004222-z4butywi 18 33 ( ( -LRB- cord-004222-z4butywi 18 34 AID aid NN cord-004222-z4butywi 18 35 ) ) -RRB- cord-004222-z4butywi 18 36 . . . cord-004222-z4butywi 19 1 The the DT cord-004222-z4butywi 19 2 OmniRat OmniRat NNP cord-004222-z4butywi 19 3 was be VBD cord-004222-z4butywi 19 4 created create VBN cord-004222-z4butywi 19 5 by by IN cord-004222-z4butywi 19 6 genomic genomic JJ cord-004222-z4butywi 19 7 integration integration NN cord-004222-z4butywi 19 8 of of IN cord-004222-z4butywi 19 9 human human JJ cord-004222-z4butywi 19 10 immunoglobulin immunoglobulin NN cord-004222-z4butywi 19 11 ( ( -LRB- cord-004222-z4butywi 19 12 Ig Ig NNP cord-004222-z4butywi 19 13 ) ) -RRB- cord-004222-z4butywi 19 14 loci locus NNS cord-004222-z4butywi 19 15 on on IN cord-004222-z4butywi 19 16 a a DT cord-004222-z4butywi 19 17 background background NN cord-004222-z4butywi 19 18 of of IN cord-004222-z4butywi 19 19 inactivated inactivate VBN cord-004222-z4butywi 19 20 endogenous endogenous JJ cord-004222-z4butywi 19 21 rat rat NN cord-004222-z4butywi 19 22 Ig ig NN cord-004222-z4butywi 19 23 loci locus NNS cord-004222-z4butywi 19 24 . . . cord-004222-z4butywi 20 1 It -PRON- PRP cord-004222-z4butywi 20 2 expresses express VBZ cord-004222-z4butywi 20 3 chimeric chimeric JJ cord-004222-z4butywi 20 4 heavy heavy JJ cord-004222-z4butywi 20 5 chains chain NNS cord-004222-z4butywi 20 6 ( ( -LRB- cord-004222-z4butywi 20 7 i.e. i.e. FW cord-004222-z4butywi 20 8 human human JJ cord-004222-z4butywi 20 9 V V NNP cord-004222-z4butywi 20 10 , , , cord-004222-z4butywi 20 11 D D NNP cord-004222-z4butywi 20 12 , , , cord-004222-z4butywi 20 13 and and CC cord-004222-z4butywi 20 14 J J NNP cord-004222-z4butywi 20 15 genes gene NNS cord-004222-z4butywi 20 16 and and CC cord-004222-z4butywi 20 17 rat rat NN cord-004222-z4butywi 20 18 constant constant JJ cord-004222-z4butywi 20 19 genes gene NNS cord-004222-z4butywi 20 20 ) ) -RRB- cord-004222-z4butywi 20 21 that that WDT cord-004222-z4butywi 20 22 pair pair VBP cord-004222-z4butywi 20 23 with with IN cord-004222-z4butywi 20 24 fully fully RB cord-004222-z4butywi 20 25 human human JJ cord-004222-z4butywi 20 26 light light NN cord-004222-z4butywi 20 27 chains chain NNS cord-004222-z4butywi 20 28 11 11 CD cord-004222-z4butywi 20 29 , , , cord-004222-z4butywi 20 30 12 12 CD cord-004222-z4butywi 20 31 . . . cord-004222-z4butywi 21 1 We -PRON- PRP cord-004222-z4butywi 21 2 sought seek VBD cord-004222-z4butywi 21 3 to to TO cord-004222-z4butywi 21 4 characterize characterize VB cord-004222-z4butywi 21 5 the the DT cord-004222-z4butywi 21 6 circulating circulate VBG cord-004222-z4butywi 21 7 antibody antibody NN cord-004222-z4butywi 21 8 repertoire repertoire NN cord-004222-z4butywi 21 9 diversity diversity NN cord-004222-z4butywi 21 10 in in IN cord-004222-z4butywi 21 11 this this DT cord-004222-z4butywi 21 12 animal animal NN cord-004222-z4butywi 21 13 and and CC cord-004222-z4butywi 21 14 make make VB cord-004222-z4butywi 21 15 comparisons comparison NNS cord-004222-z4butywi 21 16 to to IN cord-004222-z4butywi 21 17 humans human NNS cord-004222-z4butywi 21 18 . . . cord-004222-z4butywi 22 1 High high JJ cord-004222-z4butywi 22 2 throughput throughput NN cord-004222-z4butywi 22 3 antibody antibody NN cord-004222-z4butywi 22 4 sequencing sequencing NN cord-004222-z4butywi 22 5 has have VBZ cord-004222-z4butywi 22 6 been be VBN cord-004222-z4butywi 22 7 used use VBN cord-004222-z4butywi 22 8 to to TO cord-004222-z4butywi 22 9 describe describe VB cord-004222-z4butywi 22 10 the the DT cord-004222-z4butywi 22 11 circulating circulate VBG cord-004222-z4butywi 22 12 antibody antibody NN cord-004222-z4butywi 22 13 repertoire repertoire NN cord-004222-z4butywi 22 14 of of IN cord-004222-z4butywi 22 15 organisms organism NNS cord-004222-z4butywi 22 16 , , , cord-004222-z4butywi 22 17 including include VBG cord-004222-z4butywi 22 18 more more RBR cord-004222-z4butywi 22 19 recently recently RB cord-004222-z4butywi 22 20 at at IN cord-004222-z4butywi 22 21 unprecedented unprecedented JJ cord-004222-z4butywi 22 22 depth depth NN cord-004222-z4butywi 22 23 in in IN cord-004222-z4butywi 22 24 humans human NNS cord-004222-z4butywi 22 25 13 13 CD cord-004222-z4butywi 22 26 . . . cord-004222-z4butywi 23 1 Reverse reverse JJ cord-004222-z4butywi 23 2 transcription transcription NN cord-004222-z4butywi 23 3 of of IN cord-004222-z4butywi 23 4 antibody antibody NN cord-004222-z4butywi 23 5 RNA RNA NNP cord-004222-z4butywi 23 6 and and CC cord-004222-z4butywi 23 7 combined combine VBN cord-004222-z4butywi 23 8 tagging tagging NN cord-004222-z4butywi 23 9 with with IN cord-004222-z4butywi 23 10 unique unique JJ cord-004222-z4butywi 23 11 molecular molecular JJ cord-004222-z4butywi 23 12 identifiers identifier NNS cord-004222-z4butywi 23 13 ( ( -LRB- cord-004222-z4butywi 23 14 UMIs umi NNS cord-004222-z4butywi 23 15 ) ) -RRB- cord-004222-z4butywi 23 16 have have VBP cord-004222-z4butywi 23 17 allowed allow VBN cord-004222-z4butywi 23 18 us -PRON- PRP cord-004222-z4butywi 23 19 14 14 CD cord-004222-z4butywi 23 20 and and CC cord-004222-z4butywi 23 21 others other NNS cord-004222-z4butywi 23 22 15 15 CD cord-004222-z4butywi 23 23 , , , cord-004222-z4butywi 23 24 16 16 CD cord-004222-z4butywi 23 25 to to TO cord-004222-z4butywi 23 26 correct correct VB cord-004222-z4butywi 23 27 for for IN cord-004222-z4butywi 23 28 error error NN cord-004222-z4butywi 23 29 and and CC cord-004222-z4butywi 23 30 bias bias NN cord-004222-z4butywi 23 31 in in IN cord-004222-z4butywi 23 32 antibody antibody NN cord-004222-z4butywi 23 33 sequencing sequencing NN cord-004222-z4butywi 23 34 . . . cord-004222-z4butywi 24 1 Using use VBG cord-004222-z4butywi 24 2 these these DT cord-004222-z4butywi 24 3 methods method NNS cord-004222-z4butywi 24 4 to to TO cord-004222-z4butywi 24 5 gain gain VB cord-004222-z4butywi 24 6 insight insight NN cord-004222-z4butywi 24 7 into into IN cord-004222-z4butywi 24 8 the the DT cord-004222-z4butywi 24 9 antibody antibody NN cord-004222-z4butywi 24 10 repertoire repertoire NN cord-004222-z4butywi 24 11 of of IN cord-004222-z4butywi 24 12 OmniRats OmniRats NNP cord-004222-z4butywi 24 13 , , , cord-004222-z4butywi 24 14 we -PRON- PRP cord-004222-z4butywi 24 15 ask ask VBP cord-004222-z4butywi 24 16 whether whether IN cord-004222-z4butywi 24 17 or or CC cord-004222-z4butywi 24 18 not not RB cord-004222-z4butywi 24 19 it -PRON- PRP cord-004222-z4butywi 24 20 accurately accurately RB cord-004222-z4butywi 24 21 represents represent VBZ cord-004222-z4butywi 24 22 that that DT cord-004222-z4butywi 24 23 of of IN cord-004222-z4butywi 24 24 humans human NNS cord-004222-z4butywi 24 25 , , , cord-004222-z4butywi 24 26 and and CC cord-004222-z4butywi 24 27 by by IN cord-004222-z4butywi 24 28 extension extension NN cord-004222-z4butywi 24 29 allows allow VBZ cord-004222-z4butywi 24 30 for for IN cord-004222-z4butywi 24 31 usefulness usefulness NN cord-004222-z4butywi 24 32 in in IN cord-004222-z4butywi 24 33 the the DT cord-004222-z4butywi 24 34 approximation approximation NN cord-004222-z4butywi 24 35 of of IN cord-004222-z4butywi 24 36 the the DT cord-004222-z4butywi 24 37 human human JJ cord-004222-z4butywi 24 38 antibody antibody NN cord-004222-z4butywi 24 39 response response NN cord-004222-z4butywi 24 40 . . . cord-004222-z4butywi 25 1 We -PRON- PRP cord-004222-z4butywi 25 2 postulate postulate VBP cord-004222-z4butywi 25 3 that that IN cord-004222-z4butywi 25 4 there there EX cord-004222-z4butywi 25 5 are be VBP cord-004222-z4butywi 25 6 major major JJ cord-004222-z4butywi 25 7 differences difference NNS cord-004222-z4butywi 25 8 in in IN cord-004222-z4butywi 25 9 the the DT cord-004222-z4butywi 25 10 repertoires repertoire NNS cord-004222-z4butywi 25 11 due due JJ cord-004222-z4butywi 25 12 to to IN cord-004222-z4butywi 25 13 distinctness distinctness NN cord-004222-z4butywi 25 14 in in IN cord-004222-z4butywi 25 15 the the DT cord-004222-z4butywi 25 16 Ig Ig NNP cord-004222-z4butywi 25 17 loci locus NNS cord-004222-z4butywi 25 18 genomic genomic JJ cord-004222-z4butywi 25 19 structure structure NN cord-004222-z4butywi 25 20 and and CC cord-004222-z4butywi 25 21 genes gene NNS cord-004222-z4butywi 25 22 that that WDT cord-004222-z4butywi 25 23 shape shape VBP cord-004222-z4butywi 25 24 antibody antibody NN cord-004222-z4butywi 25 25 diversity diversity NN cord-004222-z4butywi 25 26 between between IN cord-004222-z4butywi 25 27 species specie NNS cord-004222-z4butywi 25 28 . . . cord-004222-z4butywi 26 1 Here here RB cord-004222-z4butywi 26 2 , , , cord-004222-z4butywi 26 3 we -PRON- PRP cord-004222-z4butywi 26 4 provide provide VBP cord-004222-z4butywi 26 5 the the DT cord-004222-z4butywi 26 6 most most RBS cord-004222-z4butywi 26 7 thorough thorough JJ cord-004222-z4butywi 26 8 description description NN cord-004222-z4butywi 26 9 of of IN cord-004222-z4butywi 26 10 humanized humanized JJ cord-004222-z4butywi 26 11 transgenic transgenic JJ cord-004222-z4butywi 26 12 rodent rodent NN cord-004222-z4butywi 26 13 antibody antibody NN cord-004222-z4butywi 26 14 repertoires repertoire NNS cord-004222-z4butywi 26 15 to to IN cord-004222-z4butywi 26 16 date date NN cord-004222-z4butywi 26 17 and and CC cord-004222-z4butywi 26 18 leverage leverage VB cord-004222-z4butywi 26 19 a a DT cord-004222-z4butywi 26 20 novel novel NN cord-004222-z4butywi 26 21 extremely extremely RB cord-004222-z4butywi 26 22 deep deep JJ cord-004222-z4butywi 26 23 human human JJ cord-004222-z4butywi 26 24 dataset dataset NN cord-004222-z4butywi 26 25 to to TO cord-004222-z4butywi 26 26 make make VB cord-004222-z4butywi 26 27 comparisons comparison NNS cord-004222-z4butywi 26 28 with with IN cord-004222-z4butywi 26 29 implications implication NNS cord-004222-z4butywi 26 30 of of IN cord-004222-z4butywi 26 31 immediate immediate JJ cord-004222-z4butywi 26 32 use use NN cord-004222-z4butywi 26 33 as as IN cord-004222-z4butywi 26 34 a a DT cord-004222-z4butywi 26 35 reference reference NN cord-004222-z4butywi 26 36 for for IN cord-004222-z4butywi 26 37 OmniRat OmniRat NNP cord-004222-z4butywi 26 38 immunization immunization NN cord-004222-z4butywi 26 39 studies study NNS cord-004222-z4butywi 26 40 . . . cord-004222-z4butywi 27 1 We -PRON- PRP cord-004222-z4butywi 27 2 individually individually RB cord-004222-z4butywi 27 3 separated separate VBD cord-004222-z4butywi 27 4 total total JJ cord-004222-z4butywi 27 5 RNA RNA NNP cord-004222-z4butywi 27 6 from from IN cord-004222-z4butywi 27 7 spleens spleen NNS cord-004222-z4butywi 27 8 and and CC cord-004222-z4butywi 27 9 lymph lymph NN cord-004222-z4butywi 27 10 nodes node NNS cord-004222-z4butywi 27 11 of of IN cord-004222-z4butywi 27 12 three three CD cord-004222-z4butywi 27 13 unimmunized unimmunized JJ cord-004222-z4butywi 27 14 OmniRats OmniRats NNP cord-004222-z4butywi 27 15 and and CC cord-004222-z4butywi 27 16 PCR PCR NNP cord-004222-z4butywi 27 17 amplified amplify VBD cord-004222-z4butywi 27 18 the the DT cord-004222-z4butywi 27 19 heavy heavy JJ cord-004222-z4butywi 27 20 and and CC cord-004222-z4butywi 27 21 kappa kappa NN cord-004222-z4butywi 27 22 chain chain NN cord-004222-z4butywi 27 23 antibody antibody NN cord-004222-z4butywi 27 24 V v NN cord-004222-z4butywi 27 25 gene gene NN cord-004222-z4butywi 27 26 segments segment NNS cord-004222-z4butywi 27 27 . . . cord-004222-z4butywi 28 1 The the DT cord-004222-z4butywi 28 2 resulting result VBG cord-004222-z4butywi 28 3 amplicons amplicon NNS cord-004222-z4butywi 28 4 were be VBD cord-004222-z4butywi 28 5 subjected subject VBN cord-004222-z4butywi 28 6 to to IN cord-004222-z4butywi 28 7 high high JJ cord-004222-z4butywi 28 8 throughput throughput NN cord-004222-z4butywi 28 9 sequencing sequencing NN cord-004222-z4butywi 28 10 in in IN cord-004222-z4butywi 28 11 conjunction conjunction NN cord-004222-z4butywi 28 12 with with IN cord-004222-z4butywi 28 13 preprocessing preprocessing NN cord-004222-z4butywi 28 14 and and CC cord-004222-z4butywi 28 15 annotation annotation NN cord-004222-z4butywi 28 16 by by IN cord-004222-z4butywi 28 17 the the DT cord-004222-z4butywi 28 18 Abstar Abstar NNP cord-004222-z4butywi 28 19 analysis analysis NN cord-004222-z4butywi 28 20 pipeline pipeline NN cord-004222-z4butywi 28 21 17 17 CD cord-004222-z4butywi 28 22 ( ( -LRB- cord-004222-z4butywi 28 23 Methods method NNS cord-004222-z4butywi 28 24 ) ) -RRB- cord-004222-z4butywi 28 25 which which WDT cord-004222-z4butywi 28 26 resulted result VBD cord-004222-z4butywi 28 27 in in IN cord-004222-z4butywi 28 28 a a DT cord-004222-z4butywi 28 29 mean mean NN cord-004222-z4butywi 28 30 of of IN cord-004222-z4butywi 28 31 ~3 ~3 NFP cord-004222-z4butywi 28 32 × × NN cord-004222-z4butywi 28 33 10 10 CD cord-004222-z4butywi 28 34 6 6 CD cord-004222-z4butywi 28 35 processed process VBN cord-004222-z4butywi 28 36 heavy heavy JJ cord-004222-z4butywi 28 37 chain chain NN cord-004222-z4butywi 28 38 sequences sequence NNS cord-004222-z4butywi 28 39 and and CC cord-004222-z4butywi 29 1 ~1.5 ~1.5 CD cord-004222-z4butywi 29 2 × × NN cord-004222-z4butywi 29 3 10 10 CD cord-004222-z4butywi 29 4 6 6 CD cord-004222-z4butywi 29 5 processed process VBN cord-004222-z4butywi 29 6 kappa kappa NN cord-004222-z4butywi 29 7 chain chain NN cord-004222-z4butywi 29 8 sequences sequence NNS cord-004222-z4butywi 29 9 per per IN cord-004222-z4butywi 29 10 transgenic transgenic JJ cord-004222-z4butywi 29 11 animal animal NN cord-004222-z4butywi 29 12 ( ( -LRB- cord-004222-z4butywi 29 13 Table Table NNP cord-004222-z4butywi 29 14 S1 S1 NNP cord-004222-z4butywi 29 15 ) ) -RRB- cord-004222-z4butywi 29 16 . . . cord-004222-z4butywi 30 1 Two two CD cord-004222-z4butywi 30 2 previously previously RB cord-004222-z4butywi 30 3 published publish VBN cord-004222-z4butywi 30 4 datasets dataset NNS cord-004222-z4butywi 30 5 13,18 13,18 CD cord-004222-z4butywi 30 6 of of IN cord-004222-z4butywi 30 7 the the DT cord-004222-z4butywi 30 8 same same JJ cord-004222-z4butywi 30 9 10 10 CD cord-004222-z4butywi 30 10 humans human NNS cord-004222-z4butywi 30 11 which which WDT cord-004222-z4butywi 30 12 together together RB cord-004222-z4butywi 30 13 contain contain VBP cord-004222-z4butywi 30 14 a a DT cord-004222-z4butywi 30 15 mean mean NN cord-004222-z4butywi 30 16 of of IN cord-004222-z4butywi 30 17 ~3.6 ~3.6 CD cord-004222-z4butywi 30 18 × × NN cord-004222-z4butywi 30 19 10 10 CD cord-004222-z4butywi 30 20 7 7 CD cord-004222-z4butywi 30 21 processed process VBN cord-004222-z4butywi 30 22 heavy heavy JJ cord-004222-z4butywi 30 23 chain chain NN cord-004222-z4butywi 30 24 sequences sequence NNS cord-004222-z4butywi 30 25 and and CC cord-004222-z4butywi 30 26 ~1.5 ~1.5 CD cord-004222-z4butywi 30 27 × × NN cord-004222-z4butywi 30 28 10 10 CD cord-004222-z4butywi 30 29 6 6 CD cord-004222-z4butywi 30 30 processed process VBN cord-004222-z4butywi 30 31 kappa kappa NN cord-004222-z4butywi 30 32 chain chain NN cord-004222-z4butywi 30 33 sequences sequence NNS cord-004222-z4butywi 30 34 per per IN cord-004222-z4butywi 30 35 individual individual NN cord-004222-z4butywi 30 36 were be VBD cord-004222-z4butywi 30 37 used use VBN cord-004222-z4butywi 30 38 for for IN cord-004222-z4butywi 30 39 comparison comparison NN cord-004222-z4butywi 30 40 . . . cord-004222-z4butywi 31 1 We -PRON- PRP cord-004222-z4butywi 31 2 started start VBD cord-004222-z4butywi 31 3 by by IN cord-004222-z4butywi 31 4 making make VBG cord-004222-z4butywi 31 5 intra intra JJ cord-004222-z4butywi 31 6 - - JJ cord-004222-z4butywi 31 7 animal animal JJ cord-004222-z4butywi 31 8 comparisons comparison NNS cord-004222-z4butywi 31 9 , , , cord-004222-z4butywi 31 10 intra intra JJ cord-004222-z4butywi 31 11 - - JJ cord-004222-z4butywi 31 12 species species JJ cord-004222-z4butywi 31 13 comparisons comparison NNS cord-004222-z4butywi 31 14 and and CC cord-004222-z4butywi 31 15 inter inter JJ cord-004222-z4butywi 31 16 - - JJ cord-004222-z4butywi 31 17 species species JJ cord-004222-z4butywi 31 18 comparisons comparison NNS cord-004222-z4butywi 31 19 of of IN cord-004222-z4butywi 31 20 the the DT cord-004222-z4butywi 31 21 immunoglobulin immunoglobulin NN cord-004222-z4butywi 31 22 gene gene NN cord-004222-z4butywi 31 23 segment segment NN cord-004222-z4butywi 31 24 usage usage NN cord-004222-z4butywi 31 25 frequencies frequency NNS cord-004222-z4butywi 31 26 for for IN cord-004222-z4butywi 31 27 each each DT cord-004222-z4butywi 31 28 antibody antibody NN cord-004222-z4butywi 31 29 repertoire repertoire NN cord-004222-z4butywi 31 30 by by IN cord-004222-z4butywi 31 31 performing perform VBG cord-004222-z4butywi 31 32 hierarchical hierarchical JJ cord-004222-z4butywi 31 33 clustering clustering NN cord-004222-z4butywi 31 34 ( ( -LRB- cord-004222-z4butywi 31 35 Fig Fig NNP cord-004222-z4butywi 31 36 . . . cord-004222-z4butywi 31 37 1 1 CD cord-004222-z4butywi 31 38 ) ) -RRB- cord-004222-z4butywi 31 39 and and CC cord-004222-z4butywi 31 40 linear linear JJ cord-004222-z4butywi 31 41 regression regression NN cord-004222-z4butywi 31 42 analysis analysis NN cord-004222-z4butywi 31 43 ( ( -LRB- cord-004222-z4butywi 31 44 Figs Figs NNP cord-004222-z4butywi 31 45 . . . cord-004222-z4butywi 31 46 S1 S1 NNP cord-004222-z4butywi 31 47 and and CC cord-004222-z4butywi 31 48 S2 S2 NNP cord-004222-z4butywi 31 49 ) ) -RRB- cord-004222-z4butywi 31 50 . . . cord-004222-z4butywi 32 1 Repertoires repertoire NNS cord-004222-z4butywi 32 2 were be VBD cord-004222-z4butywi 32 3 found find VBN cord-004222-z4butywi 32 4 to to TO cord-004222-z4butywi 32 5 cluster cluster NN cord-004222-z4butywi 32 6 by by IN cord-004222-z4butywi 32 7 species specie NNS cord-004222-z4butywi 32 8 and and CC cord-004222-z4butywi 32 9 tissue tissue NN cord-004222-z4butywi 32 10 when when WRB cord-004222-z4butywi 32 11 variable variable JJ cord-004222-z4butywi 32 12 heavy heavy JJ cord-004222-z4butywi 32 13 ( ( -LRB- cord-004222-z4butywi 32 14 VH VH NNP cord-004222-z4butywi 32 15 ) ) -RRB- cord-004222-z4butywi 32 16 ( ( -LRB- cord-004222-z4butywi 32 17 Fig Fig NNP cord-004222-z4butywi 32 18 . . . cord-004222-z4butywi 32 19 1a 1a CD cord-004222-z4butywi 32 20 ) ) -RRB- cord-004222-z4butywi 32 21 , , , cord-004222-z4butywi 32 22 diversity diversity NN cord-004222-z4butywi 32 23 heavy heavy JJ cord-004222-z4butywi 32 24 ( ( -LRB- cord-004222-z4butywi 32 25 DH dh NN cord-004222-z4butywi 32 26 ) ) -RRB- cord-004222-z4butywi 32 27 ( ( -LRB- cord-004222-z4butywi 32 28 Fig Fig NNP cord-004222-z4butywi 32 29 . . . cord-004222-z4butywi 32 30 1b 1b CD cord-004222-z4butywi 32 31 ) ) -RRB- cord-004222-z4butywi 32 32 , , , cord-004222-z4butywi 32 33 joining join VBG cord-004222-z4butywi 32 34 heavy heavy JJ cord-004222-z4butywi 32 35 ( ( -LRB- cord-004222-z4butywi 32 36 JH JH NNP cord-004222-z4butywi 32 37 ) ) -RRB- cord-004222-z4butywi 32 38 ( ( -LRB- cord-004222-z4butywi 32 39 Fig Fig NNP cord-004222-z4butywi 32 40 . . . cord-004222-z4butywi 32 41 1c 1c NNP cord-004222-z4butywi 32 42 ) ) -RRB- cord-004222-z4butywi 32 43 and and CC cord-004222-z4butywi 32 44 variable variable JJ cord-004222-z4butywi 32 45 kappa kappa NN cord-004222-z4butywi 32 46 ( ( -LRB- cord-004222-z4butywi 32 47 VK VK NNP cord-004222-z4butywi 32 48 ) ) -RRB- cord-004222-z4butywi 33 1 ( ( -LRB- cord-004222-z4butywi 33 2 Fig Fig NNP cord-004222-z4butywi 33 3 . . . cord-004222-z4butywi 33 4 S5a s5a JJ cord-004222-z4butywi 33 5 ) ) -RRB- cord-004222-z4butywi 33 6 , , , cord-004222-z4butywi 33 7 but but CC cord-004222-z4butywi 33 8 not not RB cord-004222-z4butywi 33 9 joining join VBG cord-004222-z4butywi 33 10 kappa kappa NNP cord-004222-z4butywi 33 11 ( ( -LRB- cord-004222-z4butywi 33 12 JK JK NNP cord-004222-z4butywi 33 13 ) ) -RRB- cord-004222-z4butywi 34 1 ( ( -LRB- cord-004222-z4butywi 34 2 Fig Fig NNP cord-004222-z4butywi 34 3 . . . cord-004222-z4butywi 34 4 S5b s5b NN cord-004222-z4butywi 34 5 ) ) -RRB- cord-004222-z4butywi 35 1 gene gene NN cord-004222-z4butywi 35 2 usage usage NN cord-004222-z4butywi 35 3 was be VBD cord-004222-z4butywi 35 4 examined examine VBN cord-004222-z4butywi 35 5 . . . cord-004222-z4butywi 36 1 Differences difference NNS cord-004222-z4butywi 36 2 between between IN cord-004222-z4butywi 36 3 the the DT cord-004222-z4butywi 36 4 lymph lymph NN cord-004222-z4butywi 36 5 node node NN cord-004222-z4butywi 36 6 and and CC cord-004222-z4butywi 36 7 spleens spleen NNS cord-004222-z4butywi 36 8 of of IN cord-004222-z4butywi 36 9 individual individual JJ cord-004222-z4butywi 36 10 OmniRats OmniRats NNP cord-004222-z4butywi 36 11 were be VBD cord-004222-z4butywi 36 12 next next RB cord-004222-z4butywi 36 13 investigated investigate VBN cord-004222-z4butywi 36 14 . . . cord-004222-z4butywi 37 1 VH VH NNP cord-004222-z4butywi 37 2 gene gene NN cord-004222-z4butywi 37 3 , , , cord-004222-z4butywi 37 4 DH DH NNP cord-004222-z4butywi 37 5 gene gene NN cord-004222-z4butywi 37 6 and and CC cord-004222-z4butywi 37 7 JH JH NNP cord-004222-z4butywi 37 8 gene gene NN cord-004222-z4butywi 37 9 usage usage NN cord-004222-z4butywi 37 10 frequencies frequency NNS cord-004222-z4butywi 37 11 between between IN cord-004222-z4butywi 37 12 these these DT cord-004222-z4butywi 37 13 tissues tissue NNS cord-004222-z4butywi 37 14 were be VBD cord-004222-z4butywi 37 15 highly highly RB cord-004222-z4butywi 37 16 correlated correlate VBN cord-004222-z4butywi 38 1 ( ( -LRB- cord-004222-z4butywi 38 2 Fig Fig NNP cord-004222-z4butywi 38 3 . . . cord-004222-z4butywi 38 4 S1 S1 NNP cord-004222-z4butywi 38 5 ) ) -RRB- cord-004222-z4butywi 38 6 , , , cord-004222-z4butywi 38 7 although although IN cord-004222-z4butywi 38 8 a a DT cord-004222-z4butywi 38 9 few few JJ cord-004222-z4butywi 38 10 VH VH NNP cord-004222-z4butywi 38 11 gene gene NN cord-004222-z4butywi 38 12 segments segment NNS cord-004222-z4butywi 38 13 were be VBD cord-004222-z4butywi 38 14 overrepresented overrepresente VBN cord-004222-z4butywi 38 15 in in IN cord-004222-z4butywi 38 16 spleen spleen NNS cord-004222-z4butywi 38 17 as as IN cord-004222-z4butywi 38 18 compared compare VBN cord-004222-z4butywi 38 19 to to IN cord-004222-z4butywi 38 20 lymph lymph NN cord-004222-z4butywi 38 21 nodes node NNS cord-004222-z4butywi 38 22 including include VBG cord-004222-z4butywi 38 23 VH4 VH4 NNP cord-004222-z4butywi 38 24 - - HYPH cord-004222-z4butywi 38 25 34 34 CD cord-004222-z4butywi 38 26 , , , cord-004222-z4butywi 38 27 VH4 VH4 NNP cord-004222-z4butywi 38 28 - - HYPH cord-004222-z4butywi 38 29 59 59 CD cord-004222-z4butywi 38 30 and and CC cord-004222-z4butywi 38 31 VH5 VH5 NNP cord-004222-z4butywi 38 32 - - HYPH cord-004222-z4butywi 38 33 1 1 CD cord-004222-z4butywi 38 34 ( ( -LRB- cord-004222-z4butywi 38 35 Figs Figs NNP cord-004222-z4butywi 38 36 . . . cord-004222-z4butywi 38 37 1a 1a CD cord-004222-z4butywi 38 38 and and CC cord-004222-z4butywi 38 39 S3a s3a ADD cord-004222-z4butywi 38 40 ) ) -RRB- cord-004222-z4butywi 38 41 . . . cord-004222-z4butywi 39 1 DH DH NNP cord-004222-z4butywi 39 2 gene gene NN cord-004222-z4butywi 39 3 and and CC cord-004222-z4butywi 39 4 JH JH NNP cord-004222-z4butywi 39 5 gene gene NN cord-004222-z4butywi 39 6 usage usage NN cord-004222-z4butywi 39 7 remained remain VBD cord-004222-z4butywi 39 8 highly highly RB cord-004222-z4butywi 39 9 correlated correlate VBN cord-004222-z4butywi 39 10 with with IN cord-004222-z4butywi 39 11 minor minor JJ cord-004222-z4butywi 39 12 differences difference NNS cord-004222-z4butywi 39 13 in in IN cord-004222-z4butywi 39 14 specific specific JJ cord-004222-z4butywi 39 15 genes gene NNS cord-004222-z4butywi 39 16 ( ( -LRB- cord-004222-z4butywi 39 17 Figs fig NNS cord-004222-z4butywi 39 18 . . . cord-004222-z4butywi 40 1 1b 1b NNP cord-004222-z4butywi 40 2 , , , cord-004222-z4butywi 40 3 c c NNP cord-004222-z4butywi 40 4 , , , cord-004222-z4butywi 40 5 S1 S1 NNP cord-004222-z4butywi 40 6 and and CC cord-004222-z4butywi 40 7 S3b S3b NNP cord-004222-z4butywi 40 8 , , , cord-004222-z4butywi 40 9 c c NNP cord-004222-z4butywi 40 10 ) ) -RRB- cord-004222-z4butywi 40 11 . . . cord-004222-z4butywi 41 1 Inter inter JJ cord-004222-z4butywi 41 2 - - JJ cord-004222-z4butywi 41 3 animal animal JJ cord-004222-z4butywi 41 4 spleen spleen NN cord-004222-z4butywi 41 5 gene gene NN cord-004222-z4butywi 41 6 usage usage NN cord-004222-z4butywi 41 7 was be VBD cord-004222-z4butywi 41 8 highly highly RB cord-004222-z4butywi 41 9 correlated correlate VBN cord-004222-z4butywi 41 10 for for IN cord-004222-z4butywi 41 11 all all DT cord-004222-z4butywi 41 12 three three CD cord-004222-z4butywi 41 13 heavy heavy JJ cord-004222-z4butywi 41 14 chain chain NN cord-004222-z4butywi 41 15 gene gene NN cord-004222-z4butywi 41 16 segments segment NNS cord-004222-z4butywi 41 17 ( ( -LRB- cord-004222-z4butywi 41 18 Fig Fig NNP cord-004222-z4butywi 41 19 . . . cord-004222-z4butywi 41 20 S2 S2 NNP cord-004222-z4butywi 41 21 ) ) -RRB- cord-004222-z4butywi 41 22 . . . cord-004222-z4butywi 42 1 Inter inter JJ cord-004222-z4butywi 42 2 - - JJ cord-004222-z4butywi 42 3 human human JJ cord-004222-z4butywi 42 4 comparisons comparison NNS cord-004222-z4butywi 42 5 yielded yield VBD cord-004222-z4butywi 42 6 similar similar JJ cord-004222-z4butywi 42 7 , , , cord-004222-z4butywi 42 8 albeit albeit IN cord-004222-z4butywi 42 9 slightly slightly RB cord-004222-z4butywi 42 10 less less RBR cord-004222-z4butywi 42 11 correlated correlate VBN cord-004222-z4butywi 42 12 results result NNS cord-004222-z4butywi 42 13 ( ( -LRB- cord-004222-z4butywi 42 14 Fig Fig NNP cord-004222-z4butywi 42 15 . . . cord-004222-z4butywi 42 16 S2 S2 NNP cord-004222-z4butywi 42 17 ) ) -RRB- cord-004222-z4butywi 42 18 . . . cord-004222-z4butywi 43 1 Intra intra JJ cord-004222-z4butywi 43 2 - - JJ cord-004222-z4butywi 43 3 species species JJ cord-004222-z4butywi 43 4 VH VH NNP cord-004222-z4butywi 43 5 and and CC cord-004222-z4butywi 43 6 DH DH NNP cord-004222-z4butywi 43 7 usage usage NN cord-004222-z4butywi 43 8 comparisons comparison NNS cord-004222-z4butywi 43 9 made make VBD cord-004222-z4butywi 43 10 show show VB cord-004222-z4butywi 43 11 much much RB cord-004222-z4butywi 43 12 weaker weak JJR cord-004222-z4butywi 43 13 correlations correlation NNS cord-004222-z4butywi 43 14 with with IN cord-004222-z4butywi 43 15 lower low JJR cord-004222-z4butywi 43 16 R r NN cord-004222-z4butywi 43 17 - - HYPH cord-004222-z4butywi 43 18 squared squared JJ cord-004222-z4butywi 43 19 values value NNS cord-004222-z4butywi 43 20 than than IN cord-004222-z4butywi 43 21 any any DT cord-004222-z4butywi 43 22 other other JJ cord-004222-z4butywi 43 23 previous previous JJ cord-004222-z4butywi 43 24 comparison comparison NN cord-004222-z4butywi 43 25 , , , cord-004222-z4butywi 43 26 while while IN cord-004222-z4butywi 43 27 surprisingly surprisingly RB cord-004222-z4butywi 43 28 JH JH NNP cord-004222-z4butywi 43 29 gene gene NN cord-004222-z4butywi 43 30 usage usage NN cord-004222-z4butywi 43 31 was be VBD cord-004222-z4butywi 43 32 highly highly RB cord-004222-z4butywi 43 33 correlated correlate VBN cord-004222-z4butywi 43 34 ( ( -LRB- cord-004222-z4butywi 43 35 Fig fig NN cord-004222-z4butywi 43 36 . . . cord-004222-z4butywi 43 37 S2 S2 NNP cord-004222-z4butywi 43 38 ) ) -RRB- cord-004222-z4butywi 43 39 . . . cord-004222-z4butywi 44 1 Species species NN cord-004222-z4butywi 44 2 specific specific JJ cord-004222-z4butywi 44 3 gene gene NN cord-004222-z4butywi 44 4 usage usage NN cord-004222-z4butywi 44 5 biases bias NNS cord-004222-z4butywi 44 6 were be VBD cord-004222-z4butywi 44 7 more more RBR cord-004222-z4butywi 44 8 predominant predominant JJ cord-004222-z4butywi 44 9 in in IN cord-004222-z4butywi 44 10 variable variable JJ cord-004222-z4butywi 44 11 genes gene NNS cord-004222-z4butywi 44 12 ( ( -LRB- cord-004222-z4butywi 44 13 VH VH NNP cord-004222-z4butywi 44 14 and and CC cord-004222-z4butywi 44 15 VK VK NNP cord-004222-z4butywi 44 16 ) ) -RRB- cord-004222-z4butywi 44 17 than than IN cord-004222-z4butywi 44 18 in in IN cord-004222-z4butywi 44 19 joining join VBG cord-004222-z4butywi 44 20 genes gene NNS cord-004222-z4butywi 44 21 ( ( -LRB- cord-004222-z4butywi 44 22 JH JH NNP cord-004222-z4butywi 44 23 and and CC cord-004222-z4butywi 44 24 JK JK NNP cord-004222-z4butywi 44 25 ) ) -RRB- cord-004222-z4butywi 45 1 ( ( -LRB- cord-004222-z4butywi 45 2 Fig Fig NNP cord-004222-z4butywi 45 3 . . . cord-004222-z4butywi 45 4 S3a s3a NN cord-004222-z4butywi 45 5 - - HYPH cord-004222-z4butywi 45 6 e e NN cord-004222-z4butywi 45 7 ) ) -RRB- cord-004222-z4butywi 45 8 . . . cord-004222-z4butywi 46 1 We -PRON- PRP cord-004222-z4butywi 46 2 hypothesize hypothesize VBP cord-004222-z4butywi 46 3 that that IN cord-004222-z4butywi 46 4 this this DT cord-004222-z4butywi 46 5 may may MD cord-004222-z4butywi 46 6 be be VB cord-004222-z4butywi 46 7 due due JJ cord-004222-z4butywi 46 8 to to IN cord-004222-z4butywi 46 9 species species NN cord-004222-z4butywi 46 10 specific specific JJ cord-004222-z4butywi 46 11 differences difference NNS cord-004222-z4butywi 46 12 in in IN cord-004222-z4butywi 46 13 variable variable JJ cord-004222-z4butywi 46 14 gene gene NN cord-004222-z4butywi 46 15 order order NN cord-004222-z4butywi 46 16 , , , cord-004222-z4butywi 46 17 but but CC cord-004222-z4butywi 46 18 not not RB cord-004222-z4butywi 46 19 joining join VBG cord-004222-z4butywi 46 20 gene gene NN cord-004222-z4butywi 46 21 order order NN cord-004222-z4butywi 46 22 at at IN cord-004222-z4butywi 46 23 the the DT cord-004222-z4butywi 46 24 genomic genomic JJ cord-004222-z4butywi 46 25 loci locus NNS cord-004222-z4butywi 46 26 11 11 CD cord-004222-z4butywi 46 27 , , , cord-004222-z4butywi 46 28 although although IN cord-004222-z4butywi 46 29 no no DT cord-004222-z4butywi 46 30 significant significant JJ cord-004222-z4butywi 46 31 correlation correlation NN cord-004222-z4butywi 46 32 between between IN cord-004222-z4butywi 46 33 variable variable JJ cord-004222-z4butywi 46 34 gene gene NN cord-004222-z4butywi 46 35 order order NN cord-004222-z4butywi 46 36 and and CC cord-004222-z4butywi 46 37 gene gene NN cord-004222-z4butywi 46 38 usage usage NN cord-004222-z4butywi 46 39 in in IN cord-004222-z4butywi 46 40 the the DT cord-004222-z4butywi 46 41 OmniRat OmniRat NNP cord-004222-z4butywi 46 42 was be VBD cord-004222-z4butywi 46 43 found find VBN cord-004222-z4butywi 46 44 ( ( -LRB- cord-004222-z4butywi 46 45 data datum NNS cord-004222-z4butywi 46 46 not not RB cord-004222-z4butywi 46 47 shown show VBN cord-004222-z4butywi 46 48 ) ) -RRB- cord-004222-z4butywi 46 49 . . . cord-004222-z4butywi 47 1 OmniRats OmniRats NNP cord-004222-z4butywi 47 2 show show VBP cord-004222-z4butywi 47 3 a a DT cord-004222-z4butywi 47 4 preference preference NN cord-004222-z4butywi 47 5 for for IN cord-004222-z4butywi 47 6 DH DH NNP cord-004222-z4butywi 47 7 gene gene NN cord-004222-z4butywi 47 8 families family NNS cord-004222-z4butywi 47 9 of of IN cord-004222-z4butywi 47 10 shorter short JJR cord-004222-z4butywi 47 11 average average JJ cord-004222-z4butywi 47 12 length length NN cord-004222-z4butywi 47 13 such such JJ cord-004222-z4butywi 47 14 as as IN cord-004222-z4butywi 47 15 DH1 DH1 NNP cord-004222-z4butywi 47 16 , , , cord-004222-z4butywi 47 17 DH5 dh5 NN cord-004222-z4butywi 47 18 , , , cord-004222-z4butywi 47 19 DH6 dh6 NN cord-004222-z4butywi 47 20 and and CC cord-004222-z4butywi 47 21 DH7 dh7 NN cord-004222-z4butywi 47 22 as as IN cord-004222-z4butywi 47 23 compared compare VBN cord-004222-z4butywi 47 24 to to IN cord-004222-z4butywi 47 25 humans human NNS cord-004222-z4butywi 47 26 which which WDT cord-004222-z4butywi 47 27 show show VBP cord-004222-z4butywi 47 28 a a DT cord-004222-z4butywi 47 29 higher high JJR cord-004222-z4butywi 47 30 representation representation NN cord-004222-z4butywi 47 31 of of IN cord-004222-z4butywi 47 32 longer long JJR cord-004222-z4butywi 47 33 DH DH NNP cord-004222-z4butywi 47 34 genes gene NNS cord-004222-z4butywi 47 35 from from IN cord-004222-z4butywi 47 36 DH2 DH2 NNP cord-004222-z4butywi 47 37 , , , cord-004222-z4butywi 47 38 DH3 dh3 NN cord-004222-z4butywi 47 39 , , , cord-004222-z4butywi 47 40 and and CC cord-004222-z4butywi 47 41 DH4 DH4 NNP cord-004222-z4butywi 47 42 families family NNS cord-004222-z4butywi 47 43 with with IN cord-004222-z4butywi 47 44 the the DT cord-004222-z4butywi 47 45 exception exception NN cord-004222-z4butywi 47 46 of of IN cord-004222-z4butywi 47 47 DH3 dh3 NN cord-004222-z4butywi 47 48 - - HYPH cord-004222-z4butywi 47 49 9 9 CD cord-004222-z4butywi 47 50 which which WDT cord-004222-z4butywi 47 51 appears appear VBZ cord-004222-z4butywi 47 52 at at IN cord-004222-z4butywi 47 53 similar similar JJ cord-004222-z4butywi 47 54 frequencies frequency NNS cord-004222-z4butywi 47 55 between between IN cord-004222-z4butywi 47 56 each each DT cord-004222-z4butywi 47 57 species specie NNS cord-004222-z4butywi 47 58 ( ( -LRB- cord-004222-z4butywi 47 59 Figs fig NNS cord-004222-z4butywi 47 60 . . . cord-004222-z4butywi 48 1 1b 1b CD cord-004222-z4butywi 48 2 and and CC cord-004222-z4butywi 48 3 S3b S3b NNP cord-004222-z4butywi 48 4 ) ) -RRB- cord-004222-z4butywi 48 5 . . . cord-004222-z4butywi 49 1 VK VK NNP cord-004222-z4butywi 49 2 and and CC cord-004222-z4butywi 49 3 JK JK NNP cord-004222-z4butywi 49 4 gene gene NN cord-004222-z4butywi 49 5 usage usage NN cord-004222-z4butywi 49 6 frequencies frequency NNS cord-004222-z4butywi 49 7 were be VBD cord-004222-z4butywi 49 8 very very RB cord-004222-z4butywi 49 9 similar similar JJ cord-004222-z4butywi 49 10 for for IN cord-004222-z4butywi 49 11 all all DT cord-004222-z4butywi 49 12 comparisons comparison NNS cord-004222-z4butywi 49 13 made make VBN cord-004222-z4butywi 49 14 ( ( -LRB- cord-004222-z4butywi 49 15 Figs fig NNS cord-004222-z4butywi 49 16 . . . cord-004222-z4butywi 50 1 S1 S1 NNP cord-004222-z4butywi 50 2 - - HYPH cord-004222-z4butywi 50 3 3 3 NNP cord-004222-z4butywi 50 4 and and CC cord-004222-z4butywi 50 5 S6 S6 NNP cord-004222-z4butywi 50 6 ) ) -RRB- cord-004222-z4butywi 50 7 . . . cord-004222-z4butywi 51 1 Differences difference NNS cord-004222-z4butywi 51 2 in in IN cord-004222-z4butywi 51 3 CDR3 CDR3 NNP cord-004222-z4butywi 51 4 length length NN cord-004222-z4butywi 51 5 distributions distribution NNS cord-004222-z4butywi 51 6 of of IN cord-004222-z4butywi 51 7 each each DT cord-004222-z4butywi 51 8 repertoire repertoire NN cord-004222-z4butywi 51 9 were be VBD cord-004222-z4butywi 51 10 next next RB cord-004222-z4butywi 51 11 determined determined JJ cord-004222-z4butywi 51 12 . . . cord-004222-z4butywi 52 1 The the DT cord-004222-z4butywi 52 2 mean mean JJ cord-004222-z4butywi 52 3 heavy heavy JJ cord-004222-z4butywi 52 4 chain chain NN cord-004222-z4butywi 52 5 CDR3 CDR3 NNP cord-004222-z4butywi 52 6 ( ( -LRB- cord-004222-z4butywi 52 7 CDRH3 cdrh3 NN cord-004222-z4butywi 52 8 ) ) -RRB- cord-004222-z4butywi 52 9 length length NN cord-004222-z4butywi 52 10 in in IN cord-004222-z4butywi 52 11 humans human NNS cord-004222-z4butywi 52 12 is be VBZ cord-004222-z4butywi 52 13 14.8 14.8 CD cord-004222-z4butywi 52 14 amino amino JJ cord-004222-z4butywi 52 15 acids acid NNS cord-004222-z4butywi 52 16 , , , cord-004222-z4butywi 52 17 while while IN cord-004222-z4butywi 52 18 in in IN cord-004222-z4butywi 52 19 the the DT cord-004222-z4butywi 52 20 OmniRat OmniRat NNP cord-004222-z4butywi 52 21 we -PRON- PRP cord-004222-z4butywi 52 22 observed observe VBD cord-004222-z4butywi 52 23 a a DT cord-004222-z4butywi 52 24 mean mean JJ cord-004222-z4butywi 52 25 CDRH3 cdrh3 NN cord-004222-z4butywi 52 26 length length NN cord-004222-z4butywi 52 27 that that WDT cord-004222-z4butywi 52 28 is be VBZ cord-004222-z4butywi 52 29 shorter short JJR cord-004222-z4butywi 52 30 with with IN cord-004222-z4butywi 52 31 a a DT cord-004222-z4butywi 52 32 mean mean JJ cord-004222-z4butywi 52 33 length length NN cord-004222-z4butywi 52 34 of of IN cord-004222-z4butywi 52 35 12.1 12.1 CD cord-004222-z4butywi 52 36 amino amino NN cord-004222-z4butywi 52 37 acids acid NNS cord-004222-z4butywi 52 38 ( ( -LRB- cord-004222-z4butywi 52 39 Fig Fig NNP cord-004222-z4butywi 52 40 . . . cord-004222-z4butywi 52 41 2a 2a CD cord-004222-z4butywi 52 42 ) ) -RRB- cord-004222-z4butywi 52 43 . . . cord-004222-z4butywi 53 1 There there EX cord-004222-z4butywi 53 2 are be VBP cord-004222-z4butywi 53 3 minor minor JJ cord-004222-z4butywi 53 4 differences difference NNS cord-004222-z4butywi 53 5 in in IN cord-004222-z4butywi 53 6 the the DT cord-004222-z4butywi 53 7 kappa kappa NN cord-004222-z4butywi 53 8 light light NN cord-004222-z4butywi 53 9 chain chain NN cord-004222-z4butywi 53 10 ( ( -LRB- cord-004222-z4butywi 53 11 CDRL3 CDRL3 NNP cord-004222-z4butywi 53 12 ) ) -RRB- cord-004222-z4butywi 53 13 lengths length NNS cord-004222-z4butywi 53 14 between between IN cord-004222-z4butywi 53 15 species specie NNS cord-004222-z4butywi 53 16 with with IN cord-004222-z4butywi 53 17 near near JJ cord-004222-z4butywi 53 18 identical identical JJ cord-004222-z4butywi 53 19 average average JJ cord-004222-z4butywi 53 20 lengths length NNS cord-004222-z4butywi 53 21 of of IN cord-004222-z4butywi 53 22 9.0 9.0 CD cord-004222-z4butywi 53 23 and and CC cord-004222-z4butywi 53 24 9.1 9.1 CD cord-004222-z4butywi 53 25 for for IN cord-004222-z4butywi 53 26 OmniRats OmniRats NNP cord-004222-z4butywi 53 27 and and CC cord-004222-z4butywi 53 28 humans human NNS cord-004222-z4butywi 53 29 respectively respectively RB cord-004222-z4butywi 53 30 ( ( -LRB- cord-004222-z4butywi 53 31 Fig fig NN cord-004222-z4butywi 53 32 . . . cord-004222-z4butywi 53 33 S6c S6c NNP cord-004222-z4butywi 53 34 ) ) -RRB- cord-004222-z4butywi 53 35 . . . cord-004222-z4butywi 54 1 The the DT cord-004222-z4butywi 54 2 frequency frequency NN cord-004222-z4butywi 54 3 of of IN cord-004222-z4butywi 54 4 light light JJ cord-004222-z4butywi 54 5 chains chain NNS cord-004222-z4butywi 54 6 with with IN cord-004222-z4butywi 54 7 a a DT cord-004222-z4butywi 54 8 CDR3 CDR3 NNP cord-004222-z4butywi 54 9 of of IN cord-004222-z4butywi 54 10 5 5 CD cord-004222-z4butywi 54 11 amino amino NN cord-004222-z4butywi 54 12 acids acid NNS cord-004222-z4butywi 54 13 in in IN cord-004222-z4butywi 54 14 length length NN cord-004222-z4butywi 54 15 is be VBZ cord-004222-z4butywi 54 16 an an DT cord-004222-z4butywi 54 17 important important JJ cord-004222-z4butywi 54 18 consideration consideration NN cord-004222-z4butywi 54 19 when when WRB cord-004222-z4butywi 54 20 choosing choose VBG cord-004222-z4butywi 54 21 a a DT cord-004222-z4butywi 54 22 model model NN cord-004222-z4butywi 54 23 animal animal NN cord-004222-z4butywi 54 24 for for IN cord-004222-z4butywi 54 25 vaccination vaccination NN cord-004222-z4butywi 54 26 experiments experiment NNS cord-004222-z4butywi 54 27 involving involve VBG cord-004222-z4butywi 54 28 the the DT cord-004222-z4butywi 54 29 germline germline NN cord-004222-z4butywi 54 30 targeting target VBG cord-004222-z4butywi 54 31 immunogen immunogen NN cord-004222-z4butywi 54 32 eOD eod NN cord-004222-z4butywi 54 33 - - : cord-004222-z4butywi 54 34 GT8 gt8 NN cord-004222-z4butywi 54 35 which which WDT cord-004222-z4butywi 54 36 is be VBZ cord-004222-z4butywi 54 37 in in IN cord-004222-z4butywi 54 38 human human JJ cord-004222-z4butywi 54 39 clinical clinical JJ cord-004222-z4butywi 54 40 trials trial NNS cord-004222-z4butywi 54 41 3 3 CD cord-004222-z4butywi 54 42 , , , cord-004222-z4butywi 54 43 14 14 CD cord-004222-z4butywi 54 44 , , , cord-004222-z4butywi 54 45 19 19 CD cord-004222-z4butywi 54 46 . . . cord-004222-z4butywi 55 1 This this DT cord-004222-z4butywi 55 2 frequency frequency NN cord-004222-z4butywi 55 3 of of IN cord-004222-z4butywi 55 4 5-amino 5-amino CD cord-004222-z4butywi 55 5 acid acid NN cord-004222-z4butywi 55 6 CDRL3s CDRL3s NNP cord-004222-z4butywi 55 7 was be VBD cord-004222-z4butywi 55 8 lower low JJR cord-004222-z4butywi 55 9 in in IN cord-004222-z4butywi 55 10 OmniRats OmniRats NNP cord-004222-z4butywi 55 11 ( ( -LRB- cord-004222-z4butywi 55 12 0.02 0.02 CD cord-004222-z4butywi 55 13 % % NN cord-004222-z4butywi 55 14 ) ) -RRB- cord-004222-z4butywi 55 15 than than IN cord-004222-z4butywi 55 16 in in IN cord-004222-z4butywi 55 17 humans human NNS cord-004222-z4butywi 55 18 ( ( -LRB- cord-004222-z4butywi 55 19 0.56 0.56 CD cord-004222-z4butywi 55 20 % % NN cord-004222-z4butywi 55 21 ) ) -RRB- cord-004222-z4butywi 56 1 i.e. i.e. FW cord-004222-z4butywi 56 2 a a DT cord-004222-z4butywi 56 3 factor factor NN cord-004222-z4butywi 56 4 of of IN cord-004222-z4butywi 56 5 28 28 CD cord-004222-z4butywi 57 1 ( ( -LRB- cord-004222-z4butywi 57 2 Fig Fig NNP cord-004222-z4butywi 57 3 . . . cord-004222-z4butywi 57 4 S6c S6c NNP cord-004222-z4butywi 57 5 ) ) -RRB- cord-004222-z4butywi 57 6 . . . cord-004222-z4butywi 58 1 After after IN cord-004222-z4butywi 58 2 observing observe VBG cord-004222-z4butywi 58 3 a a DT cord-004222-z4butywi 58 4 tendency tendency NN cord-004222-z4butywi 58 5 for for IN cord-004222-z4butywi 58 6 shorter short JJR cord-004222-z4butywi 58 7 CDRH3 cdrh3 NN cord-004222-z4butywi 58 8 lengths length NNS cord-004222-z4butywi 58 9 in in IN cord-004222-z4butywi 58 10 the the DT cord-004222-z4butywi 58 11 OmniRat omnirat NN cord-004222-z4butywi 58 12 as as IN cord-004222-z4butywi 58 13 compared compare VBN cord-004222-z4butywi 58 14 to to IN cord-004222-z4butywi 58 15 humans human NNS cord-004222-z4butywi 58 16 , , , cord-004222-z4butywi 58 17 we -PRON- PRP cord-004222-z4butywi 58 18 wanted want VBD cord-004222-z4butywi 58 19 to to TO cord-004222-z4butywi 58 20 know know VB cord-004222-z4butywi 58 21 if if IN cord-004222-z4butywi 58 22 the the DT cord-004222-z4butywi 58 23 number number NN cord-004222-z4butywi 58 24 of of IN cord-004222-z4butywi 58 25 N N NNP cord-004222-z4butywi 58 26 and and CC cord-004222-z4butywi 58 27 P p NN cord-004222-z4butywi 58 28 nucleotide nucleotide JJ cord-004222-z4butywi 58 29 additions addition NNS cord-004222-z4butywi 58 30 in in IN cord-004222-z4butywi 58 31 the the DT cord-004222-z4butywi 58 32 heavy heavy JJ cord-004222-z4butywi 58 33 chain chain NN cord-004222-z4butywi 58 34 V v NN cord-004222-z4butywi 58 35 - - HYPH cord-004222-z4butywi 58 36 D D NNP cord-004222-z4butywi 58 37 and and CC cord-004222-z4butywi 58 38 D D NNP cord-004222-z4butywi 58 39 - - HYPH cord-004222-z4butywi 58 40 J J NNP cord-004222-z4butywi 58 41 junction junction NN cord-004222-z4butywi 58 42 sites site NNS cord-004222-z4butywi 58 43 were be VBD cord-004222-z4butywi 58 44 different different JJ cord-004222-z4butywi 58 45 . . . cord-004222-z4butywi 59 1 Figure figure NN cord-004222-z4butywi 59 2 2b 2b CD cord-004222-z4butywi 59 3 , , , cord-004222-z4butywi 59 4 c c NN cord-004222-z4butywi 59 5 shows show VBZ cord-004222-z4butywi 59 6 average average JJ cord-004222-z4butywi 59 7 V V NNP cord-004222-z4butywi 59 8 - - HYPH cord-004222-z4butywi 59 9 D d NN cord-004222-z4butywi 59 10 and and CC cord-004222-z4butywi 59 11 D D NNP cord-004222-z4butywi 59 12 - - HYPH cord-004222-z4butywi 59 13 J J NNP cord-004222-z4butywi 59 14 junction junction NN cord-004222-z4butywi 59 15 nucleotide nucleotide JJ cord-004222-z4butywi 59 16 addition addition NN cord-004222-z4butywi 59 17 lengths length NNS cord-004222-z4butywi 59 18 in in IN cord-004222-z4butywi 59 19 the the DT cord-004222-z4butywi 59 20 OmniRat OmniRat NNP cord-004222-z4butywi 59 21 are be VBP cord-004222-z4butywi 59 22 indeed indeed RB cord-004222-z4butywi 59 23 shorter short JJR cord-004222-z4butywi 59 24 as as IN cord-004222-z4butywi 59 25 compared compare VBN cord-004222-z4butywi 59 26 to to IN cord-004222-z4butywi 59 27 humans human NNS cord-004222-z4butywi 59 28 . . . cord-004222-z4butywi 60 1 Nucleotide nucleotide JJ cord-004222-z4butywi 60 2 additions addition NNS cord-004222-z4butywi 60 3 in in IN cord-004222-z4butywi 60 4 the the DT cord-004222-z4butywi 60 5 V V NNP cord-004222-z4butywi 60 6 - - HYPH cord-004222-z4butywi 60 7 J J NNP cord-004222-z4butywi 60 8 junctions junction NNS cord-004222-z4butywi 60 9 of of IN cord-004222-z4butywi 60 10 kappa kappa NN cord-004222-z4butywi 60 11 chains chain NNS cord-004222-z4butywi 60 12 are be VBP cord-004222-z4butywi 60 13 also also RB cord-004222-z4butywi 60 14 shorter short JJR cord-004222-z4butywi 60 15 on on IN cord-004222-z4butywi 60 16 average average JJ cord-004222-z4butywi 60 17 as as IN cord-004222-z4butywi 60 18 compared compare VBN cord-004222-z4butywi 60 19 to to IN cord-004222-z4butywi 60 20 humans human NNS cord-004222-z4butywi 60 21 ( ( -LRB- cord-004222-z4butywi 60 22 Fig Fig NNP cord-004222-z4butywi 60 23 . . . cord-004222-z4butywi 60 24 S6e s6e NN cord-004222-z4butywi 60 25 ) ) -RRB- cord-004222-z4butywi 60 26 . . . cord-004222-z4butywi 61 1 The the DT cord-004222-z4butywi 61 2 longest long JJS cord-004222-z4butywi 61 3 DH dh NN cord-004222-z4butywi 61 4 gene gene NN cord-004222-z4butywi 61 5 segments segment NNS cord-004222-z4butywi 61 6 are be VBP cord-004222-z4butywi 61 7 found find VBN cord-004222-z4butywi 61 8 in in IN cord-004222-z4butywi 61 9 the the DT cord-004222-z4butywi 61 10 DH3 dh3 NN cord-004222-z4butywi 61 11 family family NN cord-004222-z4butywi 61 12 and and CC cord-004222-z4butywi 61 13 the the DT cord-004222-z4butywi 61 14 longest long JJS cord-004222-z4butywi 61 15 JH JH NNP cord-004222-z4butywi 61 16 gene gene NN cord-004222-z4butywi 61 17 segments segment NNS cord-004222-z4butywi 61 18 come come VBP cord-004222-z4butywi 61 19 from from IN cord-004222-z4butywi 61 20 the the DT cord-004222-z4butywi 61 21 JH6 JH6 NNP cord-004222-z4butywi 61 22 gene gene NN cord-004222-z4butywi 61 23 family family NN cord-004222-z4butywi 61 24 . . . cord-004222-z4butywi 62 1 Gene gene NN cord-004222-z4butywi 62 2 segments segment NNS cord-004222-z4butywi 62 3 from from IN cord-004222-z4butywi 62 4 these these DT cord-004222-z4butywi 62 5 families family NNS cord-004222-z4butywi 62 6 are be VBP cord-004222-z4butywi 62 7 important important JJ cord-004222-z4butywi 62 8 contributors contributor NNS cord-004222-z4butywi 62 9 to to IN cord-004222-z4butywi 62 10 the the DT cord-004222-z4butywi 62 11 generation generation NN cord-004222-z4butywi 62 12 of of IN cord-004222-z4butywi 62 13 unusually unusually RB cord-004222-z4butywi 62 14 long long JJ cord-004222-z4butywi 62 15 CDRH3s cdrh3s NN cord-004222-z4butywi 62 16 in in IN cord-004222-z4butywi 62 17 humans human NNS cord-004222-z4butywi 62 18 and and CC cord-004222-z4butywi 62 19 are be VBP cord-004222-z4butywi 62 20 consistently consistently RB cord-004222-z4butywi 62 21 found find VBN cord-004222-z4butywi 62 22 in in IN cord-004222-z4butywi 62 23 certain certain JJ cord-004222-z4butywi 62 24 broadly broadly RB cord-004222-z4butywi 62 25 neutralizing neutralize VBG cord-004222-z4butywi 62 26 antibodies antibody NNS cord-004222-z4butywi 62 27 ( ( -LRB- cord-004222-z4butywi 62 28 bnAbs bnabs NN cord-004222-z4butywi 62 29 ) ) -RRB- cord-004222-z4butywi 62 30 that that WDT cord-004222-z4butywi 62 31 bind bind VBP cord-004222-z4butywi 62 32 to to IN cord-004222-z4butywi 62 33 the the DT cord-004222-z4butywi 62 34 human human JJ cord-004222-z4butywi 62 35 immunodeficiency immunodeficiency NN cord-004222-z4butywi 62 36 virus virus NN cord-004222-z4butywi 62 37 ( ( -LRB- cord-004222-z4butywi 62 38 HIV HIV NNP cord-004222-z4butywi 62 39 ) ) -RRB- cord-004222-z4butywi 62 40 envelope envelope NN cord-004222-z4butywi 62 41 ( ( -LRB- cord-004222-z4butywi 62 42 Env Env NNP cord-004222-z4butywi 62 43 ) ) -RRB- cord-004222-z4butywi 62 44 glycoprotein glycoprotein NN cord-004222-z4butywi 62 45 , , , cord-004222-z4butywi 62 46 indicating indicate VBG cord-004222-z4butywi 62 47 the the DT cord-004222-z4butywi 62 48 importance importance NN cord-004222-z4butywi 62 49 of of IN cord-004222-z4butywi 62 50 these these DT cord-004222-z4butywi 62 51 rearrangements rearrangement NNS cord-004222-z4butywi 62 52 in in IN cord-004222-z4butywi 62 53 HIV HIV NNP cord-004222-z4butywi 62 54 vaccine vaccine NN cord-004222-z4butywi 62 55 studies study NNS cord-004222-z4butywi 62 56 20 20 CD cord-004222-z4butywi 62 57 . . . cord-004222-z4butywi 63 1 On on IN cord-004222-z4butywi 63 2 average average JJ cord-004222-z4butywi 63 3 , , , cord-004222-z4butywi 63 4 the the DT cord-004222-z4butywi 63 5 frequency frequency NN cord-004222-z4butywi 63 6 of of IN cord-004222-z4butywi 63 7 antibodies antibody NNS cord-004222-z4butywi 63 8 with with IN cord-004222-z4butywi 63 9 D3-J6 D3-J6 NNP cord-004222-z4butywi 63 10 rearrangements rearrangement NNS cord-004222-z4butywi 63 11 in in IN cord-004222-z4butywi 63 12 OmniRats OmniRats NNP cord-004222-z4butywi 63 13 is be VBZ cord-004222-z4butywi 63 14 0.012 0.012 CD cord-004222-z4butywi 63 15 with with IN cord-004222-z4butywi 63 16 little little JJ cord-004222-z4butywi 63 17 variation variation NN cord-004222-z4butywi 63 18 , , , cord-004222-z4butywi 63 19 while while IN cord-004222-z4butywi 63 20 in in IN cord-004222-z4butywi 63 21 humans human NNS cord-004222-z4butywi 63 22 the the DT cord-004222-z4butywi 63 23 frequency frequency NN cord-004222-z4butywi 63 24 of of IN cord-004222-z4butywi 63 25 these these DT cord-004222-z4butywi 63 26 antibody antibody NN cord-004222-z4butywi 63 27 species species NN cord-004222-z4butywi 63 28 is be VBZ cord-004222-z4butywi 63 29 more more RBR cord-004222-z4butywi 63 30 variable variable JJ cord-004222-z4butywi 63 31 between between IN cord-004222-z4butywi 63 32 subjects subject NNS cord-004222-z4butywi 63 33 with with IN cord-004222-z4butywi 63 34 a a DT cord-004222-z4butywi 63 35 higher high JJR cord-004222-z4butywi 63 36 mean mean NN cord-004222-z4butywi 63 37 of of IN cord-004222-z4butywi 63 38 0.028 0.028 CD cord-004222-z4butywi 64 1 ( ( -LRB- cord-004222-z4butywi 64 2 Fig Fig NNP cord-004222-z4butywi 64 3 . . . cord-004222-z4butywi 64 4 2d 2d NNP cord-004222-z4butywi 64 5 ) ) -RRB- cord-004222-z4butywi 64 6 . . . cord-004222-z4butywi 65 1 The the DT cord-004222-z4butywi 65 2 preference preference NN cord-004222-z4butywi 65 3 of of IN cord-004222-z4butywi 65 4 OmniRats OmniRats NNP cord-004222-z4butywi 65 5 for for IN cord-004222-z4butywi 65 6 shorter short JJR cord-004222-z4butywi 65 7 CDRH3 cdrh3 NN cord-004222-z4butywi 65 8 lengths length NNS cord-004222-z4butywi 65 9 and and CC cord-004222-z4butywi 65 10 DH dh NN cord-004222-z4butywi 65 11 gene gene NN cord-004222-z4butywi 65 12 segments segment NNS cord-004222-z4butywi 65 13 can can MD cord-004222-z4butywi 65 14 be be VB cord-004222-z4butywi 65 15 placed place VBN cord-004222-z4butywi 65 16 in in IN cord-004222-z4butywi 65 17 the the DT cord-004222-z4butywi 65 18 context context NN cord-004222-z4butywi 65 19 of of IN cord-004222-z4butywi 65 20 shorter short JJR cord-004222-z4butywi 65 21 DH dh NN cord-004222-z4butywi 65 22 gene gene NN cord-004222-z4butywi 65 23 lengths length NNS cord-004222-z4butywi 65 24 in in IN cord-004222-z4butywi 65 25 the the DT cord-004222-z4butywi 65 26 wild wild JJ cord-004222-z4butywi 65 27 - - HYPH cord-004222-z4butywi 65 28 type type NN cord-004222-z4butywi 65 29 rat rat NN cord-004222-z4butywi 65 30 ( ( -LRB- cord-004222-z4butywi 65 31 Rattus Rattus NNP cord-004222-z4butywi 65 32 norvegicus norvegicus NN cord-004222-z4butywi 65 33 ) ) -RRB- cord-004222-z4butywi 65 34 as as IN cord-004222-z4butywi 65 35 compared compare VBN cord-004222-z4butywi 65 36 to to IN cord-004222-z4butywi 65 37 human human JJ cord-004222-z4butywi 65 38 DH dh NN cord-004222-z4butywi 65 39 genes gene NNS cord-004222-z4butywi 65 40 ( ( -LRB- cord-004222-z4butywi 65 41 Fig Fig NNP cord-004222-z4butywi 65 42 . . . cord-004222-z4butywi 65 43 2e 2e NNP cord-004222-z4butywi 65 44 ) ) -RRB- cord-004222-z4butywi 65 45 , , , cord-004222-z4butywi 65 46 indicating indicate VBG cord-004222-z4butywi 65 47 a a DT cord-004222-z4butywi 65 48 possible possible JJ cord-004222-z4butywi 65 49 biologically biologically RB cord-004222-z4butywi 65 50 intrinsic intrinsic JJ cord-004222-z4butywi 65 51 bias bias NN cord-004222-z4butywi 65 52 . . . cord-004222-z4butywi 66 1 We -PRON- PRP cord-004222-z4butywi 66 2 used use VBD cord-004222-z4butywi 66 3 IGoR IGoR NNP cord-004222-z4butywi 66 4 21 21 CD cord-004222-z4butywi 66 5 to to TO cord-004222-z4butywi 66 6 infer infer VB cord-004222-z4butywi 66 7 recombination recombination NN cord-004222-z4butywi 66 8 models model NNS cord-004222-z4butywi 66 9 for for IN cord-004222-z4butywi 66 10 each each DT cord-004222-z4butywi 66 11 individual individual JJ cord-004222-z4butywi 66 12 repertoire repertoire NN cord-004222-z4butywi 66 13 from from IN cord-004222-z4butywi 66 14 100,000 100,000 CD cord-004222-z4butywi 66 15 unmutated unmutated JJ cord-004222-z4butywi 66 16 sequences sequence NNS cord-004222-z4butywi 66 17 allowing allow VBG cord-004222-z4butywi 66 18 for for IN cord-004222-z4butywi 66 19 the the DT cord-004222-z4butywi 66 20 quantification quantification NN cord-004222-z4butywi 66 21 of of IN cord-004222-z4butywi 66 22 differences difference NNS cord-004222-z4butywi 66 23 in in IN cord-004222-z4butywi 66 24 features feature NNS cord-004222-z4butywi 66 25 of of IN cord-004222-z4butywi 66 26 heavy heavy JJ cord-004222-z4butywi 66 27 chain chain NN cord-004222-z4butywi 66 28 VDJ VDJ NNP cord-004222-z4butywi 66 29 recombination recombination NN cord-004222-z4butywi 66 30 and and CC cord-004222-z4butywi 66 31 generated generate VBD cord-004222-z4butywi 66 32 1,000,000 1,000,000 CD cord-004222-z4butywi 66 33 synthetic synthetic JJ cord-004222-z4butywi 66 34 sequences sequence NNS cord-004222-z4butywi 66 35 per per IN cord-004222-z4butywi 66 36 model model NN cord-004222-z4butywi 66 37 . . . cord-004222-z4butywi 67 1 CDRH3 cdrh3 NN cord-004222-z4butywi 67 2 length length NN cord-004222-z4butywi 67 3 , , , cord-004222-z4butywi 67 4 VD VD NNP cord-004222-z4butywi 67 5 insertion insertion NN cord-004222-z4butywi 67 6 length length NN cord-004222-z4butywi 67 7 and and CC cord-004222-z4butywi 67 8 DJ DJ NNP cord-004222-z4butywi 67 9 insertion insertion NN cord-004222-z4butywi 67 10 length length NN cord-004222-z4butywi 67 11 distributions distribution NNS cord-004222-z4butywi 67 12 from from IN cord-004222-z4butywi 67 13 the the DT cord-004222-z4butywi 67 14 synthetic synthetic JJ cord-004222-z4butywi 67 15 sequence sequence NN cord-004222-z4butywi 67 16 data datum NNS cord-004222-z4butywi 67 17 ( ( -LRB- cord-004222-z4butywi 67 18 Fig Fig NNP cord-004222-z4butywi 67 19 . . . cord-004222-z4butywi 67 20 S4a s4a JJ cord-004222-z4butywi 67 21 - - HYPH cord-004222-z4butywi 67 22 c c NN cord-004222-z4butywi 67 23 ) ) -RRB- cord-004222-z4butywi 67 24 were be VBD cord-004222-z4butywi 67 25 found find VBN cord-004222-z4butywi 67 26 to to TO cord-004222-z4butywi 67 27 be be VB cord-004222-z4butywi 67 28 very very RB cord-004222-z4butywi 67 29 similar similar JJ cord-004222-z4butywi 67 30 to to IN cord-004222-z4butywi 67 31 the the DT cord-004222-z4butywi 67 32 observed observed JJ cord-004222-z4butywi 67 33 data datum NNS cord-004222-z4butywi 67 34 Columns column NNS cord-004222-z4butywi 67 35 are be VBP cord-004222-z4butywi 67 36 antibody antibody NN cord-004222-z4butywi 67 37 repertoires repertoire NNS cord-004222-z4butywi 67 38 and and CC cord-004222-z4butywi 67 39 rows row NNS cord-004222-z4butywi 67 40 are be VBP cord-004222-z4butywi 67 41 gene gene NN cord-004222-z4butywi 67 42 segments segment NNS cord-004222-z4butywi 67 43 . . . cord-004222-z4butywi 68 1 Data datum NNS cord-004222-z4butywi 68 2 was be VBD cord-004222-z4butywi 68 3 scaled scale VBN cord-004222-z4butywi 68 4 by by IN cord-004222-z4butywi 68 5 calculating calculate VBG cord-004222-z4butywi 68 6 the the DT cord-004222-z4butywi 68 7 Z z NN cord-004222-z4butywi 68 8 - - HYPH cord-004222-z4butywi 68 9 score score NN cord-004222-z4butywi 68 10 for for IN cord-004222-z4butywi 68 11 each each DT cord-004222-z4butywi 68 12 gene gene NN cord-004222-z4butywi 68 13 ( ( -LRB- cord-004222-z4butywi 68 14 row row NN cord-004222-z4butywi 68 15 ) ) -RRB- cord-004222-z4butywi 68 16 and and CC cord-004222-z4butywi 68 17 hierarchical hierarchical JJ cord-004222-z4butywi 68 18 clustering clustering NN cord-004222-z4butywi 68 19 ( ( -LRB- cord-004222-z4butywi 68 20 Euclidean euclidean JJ cord-004222-z4butywi 68 21 distance distance NN cord-004222-z4butywi 68 22 metric metric NN cord-004222-z4butywi 68 23 ) ) -RRB- cord-004222-z4butywi 68 24 was be VBD cord-004222-z4butywi 68 25 done do VBN cord-004222-z4butywi 68 26 . . . cord-004222-z4butywi 69 1 A a DT cord-004222-z4butywi 69 2 dendrogram dendrogram JJ cord-004222-z4butywi 69 3 representation representation NN cord-004222-z4butywi 69 4 of of IN cord-004222-z4butywi 69 5 clustering clustering NN cord-004222-z4butywi 69 6 is be VBZ cord-004222-z4butywi 69 7 shown show VBN cord-004222-z4butywi 69 8 and and CC cord-004222-z4butywi 69 9 indicates indicate VBZ cord-004222-z4butywi 69 10 uniqueness uniqueness NN cord-004222-z4butywi 69 11 in in IN cord-004222-z4butywi 69 12 gene gene NN cord-004222-z4butywi 69 13 segment segment NN cord-004222-z4butywi 69 14 usage usage NN cord-004222-z4butywi 69 15 between between IN cord-004222-z4butywi 69 16 the the DT cord-004222-z4butywi 69 17 lymph lymph NN cord-004222-z4butywi 69 18 node node NN cord-004222-z4butywi 69 19 and and CC cord-004222-z4butywi 69 20 spleen spleen NN cord-004222-z4butywi 69 21 repertoires repertoire NNS cord-004222-z4butywi 69 22 of of IN cord-004222-z4butywi 69 23 the the DT cord-004222-z4butywi 69 24 OmniRat OmniRat NNP cord-004222-z4butywi 69 25 and and CC cord-004222-z4butywi 69 26 between between IN cord-004222-z4butywi 69 27 the the DT cord-004222-z4butywi 69 28 OmniRat omnirat NN cord-004222-z4butywi 69 29 and and CC cord-004222-z4butywi 69 30 human human JJ cord-004222-z4butywi 69 31 repertoires repertoire NNS cord-004222-z4butywi 69 32 . . . cord-004222-z4butywi 70 1 Red red JJ cord-004222-z4butywi 70 2 and and CC cord-004222-z4butywi 70 3 blue blue JJ cord-004222-z4butywi 70 4 indicate indicate VBP cord-004222-z4butywi 70 5 high high JJ cord-004222-z4butywi 70 6 and and CC cord-004222-z4butywi 70 7 low low JJ cord-004222-z4butywi 70 8 Z z NN cord-004222-z4butywi 70 9 - - HYPH cord-004222-z4butywi 70 10 scores score NNS cord-004222-z4butywi 70 11 respectively respectively RB cord-004222-z4butywi 71 1 ( ( -LRB- cord-004222-z4butywi 71 2 legend legend NN cord-004222-z4butywi 71 3 shown show VBN cord-004222-z4butywi 71 4 in in IN cord-004222-z4butywi 71 5 a a DT cord-004222-z4butywi 71 6 ) ) -RRB- cord-004222-z4butywi 71 7 , , , cord-004222-z4butywi 71 8 and and CC cord-004222-z4butywi 71 9 since since IN cord-004222-z4butywi 71 10 it -PRON- PRP cord-004222-z4butywi 71 11 is be VBZ cord-004222-z4butywi 71 12 calculated calculate VBN cord-004222-z4butywi 71 13 per per IN cord-004222-z4butywi 71 14 gene gene NN cord-004222-z4butywi 71 15 it -PRON- PRP cord-004222-z4butywi 71 16 represents represent VBZ cord-004222-z4butywi 71 17 differences difference NNS cord-004222-z4butywi 71 18 between between IN cord-004222-z4butywi 71 19 repertoires repertoire NNS cord-004222-z4butywi 71 20 and and CC cord-004222-z4butywi 71 21 not not RB cord-004222-z4butywi 71 22 the the DT cord-004222-z4butywi 71 23 relative relative JJ cord-004222-z4butywi 71 24 frequencies frequency NNS cord-004222-z4butywi 71 25 of of IN cord-004222-z4butywi 71 26 gene gene NN cord-004222-z4butywi 71 27 segment segment NN cord-004222-z4butywi 71 28 usage usage NN cord-004222-z4butywi 71 29 in in IN cord-004222-z4butywi 71 30 each each DT cord-004222-z4butywi 71 31 repertoire repertoire NN cord-004222-z4butywi 71 32 . . . cord-004222-z4butywi 72 1 ( ( -LRB- cord-004222-z4butywi 72 2 Fig Fig NNP cord-004222-z4butywi 72 3 . . . cord-004222-z4butywi 72 4 2a 2a CD cord-004222-z4butywi 72 5 - - HYPH cord-004222-z4butywi 72 6 c c NN cord-004222-z4butywi 72 7 ) ) -RRB- cord-004222-z4butywi 72 8 . . . cord-004222-z4butywi 73 1 Kullback Kullback NNP cord-004222-z4butywi 73 2 - - HYPH cord-004222-z4butywi 73 3 Leibler Leibler NNP cord-004222-z4butywi 73 4 ( ( -LRB- cord-004222-z4butywi 73 5 KL KL NNP cord-004222-z4butywi 73 6 ) ) -RRB- cord-004222-z4butywi 73 7 divergence divergence NN cord-004222-z4butywi 73 8 is be VBZ cord-004222-z4butywi 73 9 a a DT cord-004222-z4butywi 73 10 measure measure NN cord-004222-z4butywi 73 11 of of IN cord-004222-z4butywi 73 12 how how WRB cord-004222-z4butywi 73 13 different different JJ cord-004222-z4butywi 73 14 two two CD cord-004222-z4butywi 73 15 probability probability NN cord-004222-z4butywi 73 16 distributions distribution NNS cord-004222-z4butywi 73 17 are be VBP cord-004222-z4butywi 73 18 . . . cord-004222-z4butywi 74 1 KL KL NNP cord-004222-z4butywi 74 2 divergence divergence NN cord-004222-z4butywi 74 3 between between IN cord-004222-z4butywi 74 4 models model NNS cord-004222-z4butywi 74 5 ( ( -LRB- cord-004222-z4butywi 74 6 Fig fig NN cord-004222-z4butywi 74 7 . . . cord-004222-z4butywi 74 8 S4d S4d NNP cord-004222-z4butywi 74 9 ) ) -RRB- cord-004222-z4butywi 74 10 and and CC cord-004222-z4butywi 74 11 model model NN cord-004222-z4butywi 74 12 ' ' `` cord-004222-z4butywi 74 13 events event NNS cord-004222-z4butywi 74 14 ' ' '' cord-004222-z4butywi 74 15 ( ( -LRB- cord-004222-z4butywi 74 16 Fig Fig NNP cord-004222-z4butywi 74 17 . . . cord-004222-z4butywi 74 18 S4e s4e NN cord-004222-z4butywi 74 19 ) ) -RRB- cord-004222-z4butywi 74 20 were be VBD cord-004222-z4butywi 74 21 computed compute VBN cord-004222-z4butywi 74 22 as as IN cord-004222-z4butywi 74 23 previously previously RB cord-004222-z4butywi 74 24 described describe VBN cord-004222-z4butywi 74 25 13 13 CD cord-004222-z4butywi 74 26 . . . cord-004222-z4butywi 75 1 KL KL NNP cord-004222-z4butywi 75 2 divergence divergence NN cord-004222-z4butywi 75 3 between between IN cord-004222-z4butywi 75 4 pairs pair NNS cord-004222-z4butywi 75 5 of of IN cord-004222-z4butywi 75 6 OmniRat OmniRat NNP cord-004222-z4butywi 75 7 models model NNS cord-004222-z4butywi 75 8 was be VBD cord-004222-z4butywi 75 9 found find VBN cord-004222-z4butywi 75 10 to to TO cord-004222-z4butywi 75 11 be be VB cord-004222-z4butywi 75 12 lower low JJR cord-004222-z4butywi 75 13 than than IN cord-004222-z4butywi 75 14 KL KL NNP cord-004222-z4butywi 75 15 divergence divergence NN cord-004222-z4butywi 75 16 between between IN cord-004222-z4butywi 75 17 pairs pair NNS cord-004222-z4butywi 75 18 of of IN cord-004222-z4butywi 75 19 human human JJ cord-004222-z4butywi 75 20 models model NNS cord-004222-z4butywi 75 21 for for IN cord-004222-z4butywi 75 22 both both CC cord-004222-z4butywi 75 23 complete complete JJ cord-004222-z4butywi 75 24 and and CC cord-004222-z4butywi 75 25 all all DT cord-004222-z4butywi 75 26 event event NN cord-004222-z4butywi 75 27 level level NN cord-004222-z4butywi 75 28 calculations calculation NNS cord-004222-z4butywi 75 29 . . . cord-004222-z4butywi 76 1 The the DT cord-004222-z4butywi 76 2 average average JJ cord-004222-z4butywi 76 3 pairwise pairwise JJ cord-004222-z4butywi 76 4 OmniRat omnirat NN cord-004222-z4butywi 76 5 model model NN cord-004222-z4butywi 76 6 versus versus IN cord-004222-z4butywi 76 7 human human JJ cord-004222-z4butywi 76 8 model model NN cord-004222-z4butywi 76 9 complete complete JJ cord-004222-z4butywi 76 10 KL KL NNP cord-004222-z4butywi 76 11 divergence divergence NN cord-004222-z4butywi 76 12 calculation calculation NN cord-004222-z4butywi 76 13 was be VBD cord-004222-z4butywi 76 14 found find VBN cord-004222-z4butywi 76 15 to to TO cord-004222-z4butywi 76 16 be be VB cord-004222-z4butywi 76 17 much much RB cord-004222-z4butywi 76 18 greater great JJR cord-004222-z4butywi 76 19 than than IN cord-004222-z4butywi 76 20 that that DT cord-004222-z4butywi 76 21 of of IN cord-004222-z4butywi 76 22 pairwise pairwise JJ cord-004222-z4butywi 76 23 inter inter JJ cord-004222-z4butywi 76 24 - - JJ cord-004222-z4butywi 76 25 animal animal JJ cord-004222-z4butywi 76 26 calculations calculation NNS cord-004222-z4butywi 76 27 and and CC cord-004222-z4butywi 76 28 more more JJR cord-004222-z4butywi 76 29 than than IN cord-004222-z4butywi 76 30 twice twice PDT cord-004222-z4butywi 76 31 that that DT cord-004222-z4butywi 76 32 of of IN cord-004222-z4butywi 76 33 pairwise pairwise JJ cord-004222-z4butywi 76 34 inter inter JJ cord-004222-z4butywi 76 35 - - JJ cord-004222-z4butywi 76 36 human human JJ cord-004222-z4butywi 76 37 calculations calculation NNS cord-004222-z4butywi 76 38 . . . cord-004222-z4butywi 77 1 " " '' cord-004222-z4butywi 78 1 D D NNP cord-004222-z4butywi 78 2 - - HYPH cord-004222-z4butywi 78 3 Gene Gene NNP cord-004222-z4butywi 78 4 " " '' cord-004222-z4butywi 78 5 , , , cord-004222-z4butywi 78 6 " " '' cord-004222-z4butywi 78 7 V v NN cord-004222-z4butywi 78 8 - - HYPH cord-004222-z4butywi 78 9 gene gene NN cord-004222-z4butywi 78 10 trim trim NN cord-004222-z4butywi 78 11 ( ( -LRB- cord-004222-z4butywi 78 12 3 3 CD cord-004222-z4butywi 78 13 ' ' '' cord-004222-z4butywi 78 14 ) ) -RRB- cord-004222-z4butywi 78 15 " " '' cord-004222-z4butywi 78 16 , , , cord-004222-z4butywi 78 17 and and CC cord-004222-z4butywi 78 18 " " `` cord-004222-z4butywi 78 19 D d NN cord-004222-z4butywi 78 20 - - HYPH cord-004222-z4butywi 78 21 gene gene NN cord-004222-z4butywi 78 22 trim trim NN cord-004222-z4butywi 78 23 ( ( -LRB- cord-004222-z4butywi 78 24 3 3 CD cord-004222-z4butywi 78 25 ' ' '' cord-004222-z4butywi 78 26 ) ) -RRB- cord-004222-z4butywi 79 1 " " `` cord-004222-z4butywi 79 2 were be VBD cord-004222-z4butywi 79 3 among among IN cord-004222-z4butywi 79 4 the the DT cord-004222-z4butywi 79 5 events event NNS cord-004222-z4butywi 79 6 computed compute VBN cord-004222-z4butywi 79 7 to to TO cord-004222-z4butywi 79 8 have have VB cord-004222-z4butywi 79 9 the the DT cord-004222-z4butywi 79 10 mean mean JJ cord-004222-z4butywi 79 11 highest high JJS cord-004222-z4butywi 79 12 KL KL NNP cord-004222-z4butywi 79 13 divergence divergence NN cord-004222-z4butywi 79 14 from from IN cord-004222-z4butywi 79 15 pairwise pairwise JJ cord-004222-z4butywi 79 16 inter inter JJ cord-004222-z4butywi 79 17 - - JJ cord-004222-z4butywi 79 18 species species JJ cord-004222-z4butywi 79 19 event event NN cord-004222-z4butywi 79 20 level level NN cord-004222-z4butywi 79 21 model model NN cord-004222-z4butywi 79 22 comparisons comparison NNS cord-004222-z4butywi 79 23 . . . cord-004222-z4butywi 80 1 Class class NN cord-004222-z4butywi 80 2 switch switch NN cord-004222-z4butywi 80 3 recombination recombination NN cord-004222-z4butywi 80 4 and and CC cord-004222-z4butywi 80 5 somatic somatic JJ cord-004222-z4butywi 80 6 hypermutation hypermutation NN cord-004222-z4butywi 80 7 in in IN cord-004222-z4butywi 80 8 OmniRats OmniRats NNP cord-004222-z4butywi 80 9 . . . cord-004222-z4butywi 81 1 In in IN cord-004222-z4butywi 81 2 Supplementary Supplementary NNP cord-004222-z4butywi 81 3 Fig Fig NNP cord-004222-z4butywi 81 4 . . . cord-004222-z4butywi 82 1 S5a s5a JJ cord-004222-z4butywi 82 2 , , , cord-004222-z4butywi 82 3 the the DT cord-004222-z4butywi 82 4 frequency frequency NN cord-004222-z4butywi 82 5 of of IN cord-004222-z4butywi 82 6 antibody antibody NN cord-004222-z4butywi 82 7 isotypes isotypes NNP cord-004222-z4butywi 82 8 is be VBZ cord-004222-z4butywi 82 9 shown show VBN cord-004222-z4butywi 82 10 . . . cord-004222-z4butywi 83 1 The the DT cord-004222-z4butywi 83 2 human human JJ cord-004222-z4butywi 83 3 repertoire repertoire NN cord-004222-z4butywi 83 4 contains contain VBZ cord-004222-z4butywi 83 5 average average JJ cord-004222-z4butywi 83 6 frequencies frequency NNS cord-004222-z4butywi 83 7 of of IN cord-004222-z4butywi 83 8 0.84 0.84 CD cord-004222-z4butywi 83 9 and and CC cord-004222-z4butywi 83 10 0.16 0.16 CD cord-004222-z4butywi 83 11 for for IN cord-004222-z4butywi 83 12 IgM IgM NNP cord-004222-z4butywi 83 13 and and CC cord-004222-z4butywi 83 14 IgG IgG NNP cord-004222-z4butywi 83 15 respectively respectively RB cord-004222-z4butywi 83 16 as as IN cord-004222-z4butywi 83 17 previously previously RB cord-004222-z4butywi 83 18 published publish VBN cord-004222-z4butywi 83 19 13 13 CD cord-004222-z4butywi 83 20 , , , cord-004222-z4butywi 83 21 while while IN cord-004222-z4butywi 83 22 in in IN cord-004222-z4butywi 83 23 the the DT cord-004222-z4butywi 83 24 OmniRat OmniRat NNP cord-004222-z4butywi 83 25 antibody antibody NN cord-004222-z4butywi 83 26 repertoire repertoire NN cord-004222-z4butywi 83 27 we -PRON- PRP cord-004222-z4butywi 83 28 observe observe VBP cord-004222-z4butywi 83 29 mean mean JJ cord-004222-z4butywi 83 30 frequencies frequency NNS cord-004222-z4butywi 83 31 of of IN cord-004222-z4butywi 83 32 0.15 0.15 CD cord-004222-z4butywi 83 33 and and CC cord-004222-z4butywi 83 34 0.003 0.003 CD cord-004222-z4butywi 83 35 for for IN cord-004222-z4butywi 83 36 lymph lymph NN cord-004222-z4butywi 83 37 node node NN cord-004222-z4butywi 83 38 and and CC cord-004222-z4butywi 83 39 spleen spleen NN cord-004222-z4butywi 83 40 IgG IgG NNP cord-004222-z4butywi 83 41 respectively respectively RB cord-004222-z4butywi 83 42 and and CC cord-004222-z4butywi 83 43 means mean NNS cord-004222-z4butywi 83 44 of of IN cord-004222-z4butywi 83 45 0.85 0.85 CD cord-004222-z4butywi 83 46 and and CC cord-004222-z4butywi 83 47 0.997 0.997 CD cord-004222-z4butywi 83 48 for for IN cord-004222-z4butywi 83 49 lymph lymph NN cord-004222-z4butywi 83 50 node node NN cord-004222-z4butywi 83 51 and and CC cord-004222-z4butywi 83 52 spleen spleen NN cord-004222-z4butywi 83 53 IgM IgM NNP cord-004222-z4butywi 83 54 respectively respectively RB cord-004222-z4butywi 83 55 . . . cord-004222-z4butywi 84 1 Mean mean JJ cord-004222-z4butywi 84 2 numbers number NNS cord-004222-z4butywi 84 3 of of IN cord-004222-z4butywi 84 4 variable variable JJ cord-004222-z4butywi 84 5 gene gene NN cord-004222-z4butywi 84 6 mutations mutation NNS cord-004222-z4butywi 84 7 in in IN cord-004222-z4butywi 84 8 IgM IgM NNP cord-004222-z4butywi 84 9 ( ( -LRB- cord-004222-z4butywi 84 10 Fig Fig NNP cord-004222-z4butywi 84 11 . . . cord-004222-z4butywi 84 12 S5b S5b NNP cord-004222-z4butywi 84 13 ) ) -RRB- cord-004222-z4butywi 84 14 , , , cord-004222-z4butywi 84 15 IgG IgG NNP cord-004222-z4butywi 84 16 ( ( -LRB- cord-004222-z4butywi 84 17 Fig Fig NNP cord-004222-z4butywi 84 18 . . . cord-004222-z4butywi 84 19 S5c S5c NNP cord-004222-z4butywi 84 20 ) ) -RRB- cord-004222-z4butywi 84 21 and and CC cord-004222-z4butywi 84 22 kappa kappa NNP cord-004222-z4butywi 84 23 ( ( -LRB- cord-004222-z4butywi 84 24 Fig Fig NNP cord-004222-z4butywi 84 25 . . . cord-004222-z4butywi 84 26 S6d s6d NN cord-004222-z4butywi 84 27 ) ) -RRB- cord-004222-z4butywi 85 1 sequences sequence NNS cord-004222-z4butywi 85 2 of of IN cord-004222-z4butywi 85 3 the the DT cord-004222-z4butywi 85 4 OmniRat OmniRat NNP cord-004222-z4butywi 85 5 were be VBD cord-004222-z4butywi 85 6 about about RB cord-004222-z4butywi 85 7 half half NN cord-004222-z4butywi 85 8 of of IN cord-004222-z4butywi 85 9 those those DT cord-004222-z4butywi 85 10 found find VBN cord-004222-z4butywi 85 11 in in IN cord-004222-z4butywi 85 12 the the DT cord-004222-z4butywi 85 13 human human JJ cord-004222-z4butywi 85 14 repertoire repertoire NN cord-004222-z4butywi 85 15 . . . cord-004222-z4butywi 86 1 The the DT cord-004222-z4butywi 86 2 observed observed JJ cord-004222-z4butywi 86 3 increase increase NN cord-004222-z4butywi 86 4 in in IN cord-004222-z4butywi 86 5 SHM SHM NNP cord-004222-z4butywi 86 6 of of IN cord-004222-z4butywi 86 7 class class NN cord-004222-z4butywi 86 8 - - HYPH cord-004222-z4butywi 86 9 switched switch VBN cord-004222-z4butywi 86 10 IgG igg NN cord-004222-z4butywi 86 11 sequences sequence NNS cord-004222-z4butywi 86 12 as as IN cord-004222-z4butywi 86 13 compared compare VBN cord-004222-z4butywi 86 14 to to IN cord-004222-z4butywi 86 15 IgM IgM NNP cord-004222-z4butywi 86 16 sequences sequence NNS cord-004222-z4butywi 86 17 in in IN cord-004222-z4butywi 86 18 the the DT cord-004222-z4butywi 86 19 OmniRat OmniRat NNP cord-004222-z4butywi 86 20 demonstrates demonstrate VBZ cord-004222-z4butywi 86 21 the the DT cord-004222-z4butywi 86 22 ability ability NN cord-004222-z4butywi 86 23 of of IN cord-004222-z4butywi 86 24 the the DT cord-004222-z4butywi 86 25 animal animal NN cord-004222-z4butywi 86 26 to to TO cord-004222-z4butywi 86 27 generate generate VB cord-004222-z4butywi 86 28 memory memory NN cord-004222-z4butywi 86 29 B b NN cord-004222-z4butywi 86 30 cells cell NNS cord-004222-z4butywi 86 31 . . . cord-004222-z4butywi 87 1 We -PRON- PRP cord-004222-z4butywi 87 2 first first RB cord-004222-z4butywi 87 3 examined examine VBD cord-004222-z4butywi 87 4 clonotype clonotype NN cord-004222-z4butywi 87 5 ( ( -LRB- cord-004222-z4butywi 87 6 defined define VBN cord-004222-z4butywi 87 7 as as IN cord-004222-z4butywi 87 8 identical identical JJ cord-004222-z4butywi 87 9 VH VH NNP cord-004222-z4butywi 87 10 gene gene NN cord-004222-z4butywi 87 11 , , , cord-004222-z4butywi 87 12 JH JH NNP cord-004222-z4butywi 87 13 gene gene NN cord-004222-z4butywi 87 14 and and CC cord-004222-z4butywi 87 15 CDRH3 cdrh3 NN cord-004222-z4butywi 87 16 amino amino NN cord-004222-z4butywi 87 17 acid acid NN cord-004222-z4butywi 87 18 sequence sequence NN cord-004222-z4butywi 87 19 ) ) -RRB- cord-004222-z4butywi 87 20 diversity diversity NN cord-004222-z4butywi 87 21 of of IN cord-004222-z4butywi 87 22 the the DT cord-004222-z4butywi 87 23 heavy heavy JJ cord-004222-z4butywi 87 24 chain chain NN cord-004222-z4butywi 87 25 repertoire repertoire NN cord-004222-z4butywi 87 26 for for IN cord-004222-z4butywi 87 27 each each DT cord-004222-z4butywi 87 28 individual individual JJ cord-004222-z4butywi 87 29 animal animal NN cord-004222-z4butywi 87 30 . . . cord-004222-z4butywi 88 1 All all DT cord-004222-z4butywi 88 2 sequences sequence NNS cord-004222-z4butywi 88 3 from from IN cord-004222-z4butywi 88 4 lymph lymph NN cord-004222-z4butywi 88 5 nodes node NNS cord-004222-z4butywi 88 6 and and CC cord-004222-z4butywi 88 7 spleens spleen NNS cord-004222-z4butywi 88 8 were be VBD cord-004222-z4butywi 88 9 collapsed collapse VBN cord-004222-z4butywi 88 10 into into IN cord-004222-z4butywi 88 11 unique unique JJ cord-004222-z4butywi 88 12 clonotypes clonotype NNS cord-004222-z4butywi 88 13 , , , cord-004222-z4butywi 88 14 separately separately RB cord-004222-z4butywi 88 15 for for IN cord-004222-z4butywi 88 16 each each DT cord-004222-z4butywi 88 17 tissue tissue NN cord-004222-z4butywi 88 18 and and CC cord-004222-z4butywi 88 19 animal animal NN cord-004222-z4butywi 88 20 . . . cord-004222-z4butywi 89 1 Any any DT cord-004222-z4butywi 89 2 clonotype clonotype NN cord-004222-z4butywi 89 3 found find VBD cord-004222-z4butywi 89 4 in in IN cord-004222-z4butywi 89 5 both both DT cord-004222-z4butywi 89 6 tissue tissue NN cord-004222-z4butywi 89 7 compartments compartment NNS cord-004222-z4butywi 89 8 must must MD cord-004222-z4butywi 89 9 have have VB cord-004222-z4butywi 89 10 originated originate VBN cord-004222-z4butywi 89 11 from from IN cord-004222-z4butywi 89 12 different different JJ cord-004222-z4butywi 89 13 B b NN cord-004222-z4butywi 89 14 cells cell NNS cord-004222-z4butywi 89 15 , , , cord-004222-z4butywi 89 16 allowing allow VBG cord-004222-z4butywi 89 17 for for IN cord-004222-z4butywi 89 18 the the DT cord-004222-z4butywi 89 19 measurement measurement NN cord-004222-z4butywi 89 20 of of IN cord-004222-z4butywi 89 21 repeatedly repeatedly RB cord-004222-z4butywi 89 22 observed observe VBD cord-004222-z4butywi 89 23 clonotypes clonotype NNS cord-004222-z4butywi 89 24 . . . cord-004222-z4butywi 90 1 Rarefaction rarefaction NN cord-004222-z4butywi 90 2 curves curve NNS cord-004222-z4butywi 90 3 for for IN cord-004222-z4butywi 90 4 each each DT cord-004222-z4butywi 90 5 animal animal NN cord-004222-z4butywi 90 6 were be VBD cord-004222-z4butywi 90 7 www.nature.com/scientificreports www.nature.com/scientificreport NNS cord-004222-z4butywi 91 1 www.nature.com/scientificreports/ www.nature.com/scientificreports/ NNP cord-004222-z4butywi 91 2 generated generate VBD cord-004222-z4butywi 91 3 ( ( -LRB- cord-004222-z4butywi 91 4 Fig Fig NNP cord-004222-z4butywi 91 5 . . . cord-004222-z4butywi 91 6 3a 3a NNP cord-004222-z4butywi 91 7 ) ) -RRB- cord-004222-z4butywi 91 8 and and CC cord-004222-z4butywi 91 9 indicate indicate VBP cord-004222-z4butywi 91 10 a a DT cord-004222-z4butywi 91 11 low low JJ cord-004222-z4butywi 91 12 frequency frequency NN cord-004222-z4butywi 91 13 of of IN cord-004222-z4butywi 91 14 repeatedly repeatedly RB cord-004222-z4butywi 91 15 observed observe VBD cord-004222-z4butywi 91 16 clonotypes clonotype NNS cord-004222-z4butywi 91 17 . . . cord-004222-z4butywi 92 1 We -PRON- PRP cord-004222-z4butywi 92 2 estimated estimate VBD cord-004222-z4butywi 92 3 diversity diversity NN cord-004222-z4butywi 92 4 using use VBG cord-004222-z4butywi 92 5 Chao Chao NNP cord-004222-z4butywi 92 6 2 2 CD cord-004222-z4butywi 92 7 22 22 CD cord-004222-z4butywi 92 8 , , , cord-004222-z4butywi 92 9 23 23 CD cord-004222-z4butywi 92 10 and and CC cord-004222-z4butywi 92 11 Recon Recon NNP cord-004222-z4butywi 92 12 23,24 23,24 CD cord-004222-z4butywi 92 13 as as IN cord-004222-z4butywi 92 14 previously previously RB cord-004222-z4butywi 92 15 described describe VBN cord-004222-z4butywi 92 16 13 13 CD cord-004222-z4butywi 92 17 . . . cord-004222-z4butywi 93 1 Diversity diversity NN cord-004222-z4butywi 93 2 estimates estimate NNS cord-004222-z4butywi 93 3 were be VBD cord-004222-z4butywi 93 4 similar similar JJ cord-004222-z4butywi 93 5 between between IN cord-004222-z4butywi 93 6 the the DT cord-004222-z4butywi 93 7 two two CD cord-004222-z4butywi 93 8 estimators estimator NNS cord-004222-z4butywi 93 9 , , , cord-004222-z4butywi 93 10 ( ( -LRB- cord-004222-z4butywi 93 11 4.8 4.8 CD cord-004222-z4butywi 93 12 × × NN cord-004222-z4butywi 93 13 10 10 CD cord-004222-z4butywi 93 14 6 6 CD cord-004222-z4butywi 93 15 -7.4 -7.4 CD cord-004222-z4butywi 93 16 × × NNP cord-004222-z4butywi 93 17 10 10 CD cord-004222-z4butywi 93 18 6 6 CD cord-004222-z4butywi 93 19 ) ) -RRB- cord-004222-z4butywi 93 20 for for IN cord-004222-z4butywi 93 21 Chao Chao NNP cord-004222-z4butywi 93 22 and and CC cord-004222-z4butywi 93 23 ( ( -LRB- cord-004222-z4butywi 93 24 9.4 9.4 CD cord-004222-z4butywi 93 25 × × NN cord-004222-z4butywi 93 26 10 10 CD cord-004222-z4butywi 93 27 6 6 CD cord-004222-z4butywi 93 28 -1.9 -1.9 CD cord-004222-z4butywi 93 29 × × NN cord-004222-z4butywi 93 30 10 10 CD cord-004222-z4butywi 93 31 7 7 CD cord-004222-z4butywi 93 32 ) ) -RRB- cord-004222-z4butywi 93 33 for for IN cord-004222-z4butywi 93 34 Recon Recon NNP cord-004222-z4butywi 93 35 ( ( -LRB- cord-004222-z4butywi 93 36 Fig Fig NNP cord-004222-z4butywi 93 37 . . . cord-004222-z4butywi 93 38 3b 3b CD cord-004222-z4butywi 93 39 ) ) -RRB- cord-004222-z4butywi 93 40 . . . cord-004222-z4butywi 94 1 We -PRON- PRP cord-004222-z4butywi 94 2 next next RB cord-004222-z4butywi 94 3 estimated estimate VBD cord-004222-z4butywi 94 4 heavy heavy JJ cord-004222-z4butywi 94 5 chain chain NN cord-004222-z4butywi 94 6 sequence sequence NN cord-004222-z4butywi 94 7 diversity diversity NN cord-004222-z4butywi 94 8 for for IN cord-004222-z4butywi 94 9 each each DT cord-004222-z4butywi 94 10 animal animal NN cord-004222-z4butywi 95 1 ( ( -LRB- cord-004222-z4butywi 95 2 Fig Fig NNP cord-004222-z4butywi 95 3 . . . cord-004222-z4butywi 95 4 3c 3c NNP cord-004222-z4butywi 95 5 ) ) -RRB- cord-004222-z4butywi 96 1 and and CC cord-004222-z4butywi 96 2 again again RB cord-004222-z4butywi 96 3 found find VBD cord-004222-z4butywi 96 4 that that IN cord-004222-z4butywi 96 5 both both DT cord-004222-z4butywi 96 6 estimators estimator NNS cord-004222-z4butywi 96 7 broadly broadly RB cord-004222-z4butywi 96 8 agreed agree VBD cord-004222-z4butywi 96 9 , , , cord-004222-z4butywi 96 10 giving give VBG cord-004222-z4butywi 96 11 similar similar JJ cord-004222-z4butywi 96 12 values value NNS cord-004222-z4butywi 96 13 of of IN cord-004222-z4butywi 96 14 ( ( -LRB- cord-004222-z4butywi 96 15 5.0 5.0 CD cord-004222-z4butywi 96 16 × × NN cord-004222-z4butywi 96 17 10 10 CD cord-004222-z4butywi 96 18 7 7 CD cord-004222-z4butywi 96 19 -8.1 -8.1 NNP cord-004222-z4butywi 96 20 × × NNP cord-004222-z4butywi 96 21 10 10 CD cord-004222-z4butywi 96 22 7 7 CD cord-004222-z4butywi 96 23 ) ) -RRB- cord-004222-z4butywi 96 24 for for IN cord-004222-z4butywi 96 25 Chao Chao NNP cord-004222-z4butywi 96 26 and and CC cord-004222-z4butywi 96 27 ( ( -LRB- cord-004222-z4butywi 96 28 5.4 5.4 CD cord-004222-z4butywi 96 29 × × NN cord-004222-z4butywi 96 30 10 10 CD cord-004222-z4butywi 96 31 7 7 CD cord-004222-z4butywi 96 32 -1.0 -1.0 CD cord-004222-z4butywi 96 33 × × NN cord-004222-z4butywi 96 34 10 10 CD cord-004222-z4butywi 96 35 8 8 CD cord-004222-z4butywi 96 36 ) ) -RRB- cord-004222-z4butywi 96 37 for for IN cord-004222-z4butywi 96 38 Recon Recon NNP cord-004222-z4butywi 96 39 . . . cord-004222-z4butywi 97 1 Previously previously RB cord-004222-z4butywi 97 2 published publish VBN cord-004222-z4butywi 97 3 estimates estimate NNS cord-004222-z4butywi 97 4 of of IN cord-004222-z4butywi 97 5 both both DT cord-004222-z4butywi 97 6 clonotype clonotype NN cord-004222-z4butywi 97 7 and and CC cord-004222-z4butywi 97 8 sequence sequence NN cord-004222-z4butywi 97 9 diversity diversity NN cord-004222-z4butywi 97 10 in in IN cord-004222-z4butywi 97 11 individual individual JJ cord-004222-z4butywi 97 12 humans human NNS cord-004222-z4butywi 97 13 17 17 CD cord-004222-z4butywi 97 14 only only RB cord-004222-z4butywi 97 15 exceed exceed VBP cord-004222-z4butywi 97 16 that that DT cord-004222-z4butywi 97 17 in in IN cord-004222-z4butywi 97 18 the the DT cord-004222-z4butywi 97 19 OmniRats OmniRats NNP cord-004222-z4butywi 97 20 by by IN cord-004222-z4butywi 97 21 a a DT cord-004222-z4butywi 97 22 maximum maximum JJ cord-004222-z4butywi 97 23 two two CD cord-004222-z4butywi 97 24 orders order NNS cord-004222-z4butywi 97 25 of of IN cord-004222-z4butywi 97 26 magnitude magnitude NN cord-004222-z4butywi 97 27 . . . cord-004222-z4butywi 98 1 This this DT cord-004222-z4butywi 98 2 is be VBZ cord-004222-z4butywi 98 3 surprising surprising JJ cord-004222-z4butywi 98 4 given give VBN cord-004222-z4butywi 98 5 that that IN cord-004222-z4butywi 98 6 the the DT cord-004222-z4butywi 98 7 OmniRat OmniRat NNP cord-004222-z4butywi 98 8 is be VBZ cord-004222-z4butywi 98 9 more more RBR cord-004222-z4butywi 98 10 restricted restricted JJ cord-004222-z4butywi 98 11 in in IN cord-004222-z4butywi 98 12 CDRH3 cdrh3 NN cord-004222-z4butywi 98 13 length length NN cord-004222-z4butywi 98 14 . . . cord-004222-z4butywi 99 1 For for IN cord-004222-z4butywi 99 2 each each DT cord-004222-z4butywi 99 3 combination combination NN cord-004222-z4butywi 99 4 of of IN cord-004222-z4butywi 99 5 two two CD cord-004222-z4butywi 99 6 or or CC cord-004222-z4butywi 99 7 more more JJR cord-004222-z4butywi 99 8 animals animal NNS cord-004222-z4butywi 99 9 , , , cord-004222-z4butywi 99 10 we -PRON- PRP cord-004222-z4butywi 99 11 computed compute VBD cord-004222-z4butywi 99 12 the the DT cord-004222-z4butywi 99 13 frequency frequency NN cord-004222-z4butywi 99 14 of of IN cord-004222-z4butywi 99 15 shared share VBN cord-004222-z4butywi 99 16 unique unique JJ cord-004222-z4butywi 99 17 heavy heavy JJ cord-004222-z4butywi 99 18 chain chain NN cord-004222-z4butywi 99 19 clonotypes clonotype NNS cord-004222-z4butywi 99 20 ( ( -LRB- cord-004222-z4butywi 99 21 Fig Fig NNP cord-004222-z4butywi 99 22 . . . cord-004222-z4butywi 99 23 4a 4a CD cord-004222-z4butywi 99 24 ) ) -RRB- cord-004222-z4butywi 99 25 . . . cord-004222-z4butywi 100 1 There there EX cord-004222-z4butywi 100 2 was be VBD cord-004222-z4butywi 100 3 on on IN cord-004222-z4butywi 100 4 average average JJ cord-004222-z4butywi 100 5 9.32 9.32 CD cord-004222-z4butywi 100 6 % % NN cord-004222-z4butywi 100 7 of of IN cord-004222-z4butywi 100 8 clonotypes clonotype NNS cord-004222-z4butywi 100 9 shared share VBN cord-004222-z4butywi 100 10 between between IN cord-004222-z4butywi 100 11 each each DT cord-004222-z4butywi 100 12 combination combination NN cord-004222-z4butywi 100 13 of of IN cord-004222-z4butywi 100 14 two two CD cord-004222-z4butywi 100 15 OmniRats OmniRats NNPS cord-004222-z4butywi 100 16 . . . cord-004222-z4butywi 101 1 Surprisingly surprisingly RB cord-004222-z4butywi 101 2 , , , cord-004222-z4butywi 101 3 we -PRON- PRP cord-004222-z4butywi 101 4 found find VBD cord-004222-z4butywi 101 5 that that IN cord-004222-z4butywi 101 6 4.90 4.90 CD cord-004222-z4butywi 101 7 % % NN cord-004222-z4butywi 101 8 of of IN cord-004222-z4butywi 101 9 clonotypes clonotype NNS cord-004222-z4butywi 101 10 were be VBD cord-004222-z4butywi 101 11 shared share VBN cord-004222-z4butywi 101 12 between between IN cord-004222-z4butywi 101 13 all all DT cord-004222-z4butywi 101 14 three three CD cord-004222-z4butywi 101 15 of of IN cord-004222-z4butywi 101 16 the the DT cord-004222-z4butywi 101 17 animals animal NNS cord-004222-z4butywi 101 18 . . . cord-004222-z4butywi 102 1 Next next RB cord-004222-z4butywi 102 2 , , , cord-004222-z4butywi 102 3 we -PRON- PRP cord-004222-z4butywi 102 4 pooled pool VBD cord-004222-z4butywi 102 5 unique unique JJ cord-004222-z4butywi 102 6 heavy heavy JJ cord-004222-z4butywi 102 7 chain chain NN cord-004222-z4butywi 102 8 clonotypes clonotype NNS cord-004222-z4butywi 102 9 from from IN cord-004222-z4butywi 102 10 all all DT cord-004222-z4butywi 102 11 ten ten CD cord-004222-z4butywi 102 12 human human JJ cord-004222-z4butywi 102 13 subjects subject NNS cord-004222-z4butywi 102 14 and and CC cord-004222-z4butywi 102 15 measured measure VBD cord-004222-z4butywi 102 16 the the DT cord-004222-z4butywi 102 17 percentage percentage NN cord-004222-z4butywi 102 18 of of IN cord-004222-z4butywi 102 19 clonotypes clonotype NNS cord-004222-z4butywi 102 20 in in IN cord-004222-z4butywi 102 21 each each DT cord-004222-z4butywi 102 22 animal animal NN cord-004222-z4butywi 102 23 that that WDT cord-004222-z4butywi 102 24 could could MD cord-004222-z4butywi 102 25 be be VB cord-004222-z4butywi 102 26 found find VBN cord-004222-z4butywi 102 27 in in IN cord-004222-z4butywi 102 28 the the DT cord-004222-z4butywi 102 29 total total JJ cord-004222-z4butywi 102 30 human human JJ cord-004222-z4butywi 102 31 pool pool NN cord-004222-z4butywi 102 32 ( ( -LRB- cord-004222-z4butywi 102 33 Fig Fig NNP cord-004222-z4butywi 102 34 . . . cord-004222-z4butywi 102 35 4b 4b CD cord-004222-z4butywi 102 36 ) ) -RRB- cord-004222-z4butywi 102 37 . . . cord-004222-z4butywi 103 1 We -PRON- PRP cord-004222-z4butywi 103 2 found find VBD cord-004222-z4butywi 103 3 that that IN cord-004222-z4butywi 103 4 ( ( -LRB- cord-004222-z4butywi 103 5 11.9 11.9 CD cord-004222-z4butywi 103 6 - - SYM cord-004222-z4butywi 103 7 13.7 13.7 CD cord-004222-z4butywi 103 8 % % NN cord-004222-z4butywi 103 9 ) ) -RRB- cord-004222-z4butywi 103 10 of of IN cord-004222-z4butywi 103 11 each each DT cord-004222-z4butywi 103 12 OmniRat omnirat NN cord-004222-z4butywi 103 13 clonotype clonotype NN cord-004222-z4butywi 103 14 repertoire repertoire NN cord-004222-z4butywi 103 15 and and CC cord-004222-z4butywi 103 16 13.8 13.8 CD cord-004222-z4butywi 103 17 % % NN cord-004222-z4butywi 103 18 of of IN cord-004222-z4butywi 103 19 clonotypes clonotype NNS cord-004222-z4butywi 103 20 combined combine VBN cord-004222-z4butywi 103 21 from from IN cord-004222-z4butywi 103 22 all all DT cord-004222-z4butywi 103 23 animals animal NNS cord-004222-z4butywi 103 24 could could MD cord-004222-z4butywi 103 25 be be VB cord-004222-z4butywi 103 26 found find VBN cord-004222-z4butywi 103 27 in in IN cord-004222-z4butywi 103 28 the the DT cord-004222-z4butywi 103 29 total total JJ cord-004222-z4butywi 103 30 human human JJ cord-004222-z4butywi 103 31 clonotype clonotype NN cord-004222-z4butywi 103 32 pool pool NN cord-004222-z4butywi 103 33 . . . cord-004222-z4butywi 104 1 Shared share VBN cord-004222-z4butywi 104 2 clonotypes clonotype NNS cord-004222-z4butywi 104 3 have have VBP cord-004222-z4butywi 104 4 shorter short JJR cord-004222-z4butywi 104 5 CDRH3 cdrh3 NN cord-004222-z4butywi 104 6 lengths length NNS cord-004222-z4butywi 104 7 than than IN cord-004222-z4butywi 104 8 unshared unshared JJ cord-004222-z4butywi 104 9 clonotypes clonotype NNS cord-004222-z4butywi 104 10 on on IN cord-004222-z4butywi 104 11 average average JJ cord-004222-z4butywi 104 12 ( ( -LRB- cord-004222-z4butywi 104 13 Fig Fig NNP cord-004222-z4butywi 104 14 . . NNP cord-004222-z4butywi 104 15 4c 4c LS cord-004222-z4butywi 104 16 ) ) -RRB- cord-004222-z4butywi 104 17 which which WDT cord-004222-z4butywi 104 18 is be VBZ cord-004222-z4butywi 104 19 expected expect VBN cord-004222-z4butywi 104 20 given give VBN cord-004222-z4butywi 104 21 that that DT cord-004222-z4butywi 104 22 sequence sequence NN cord-004222-z4butywi 104 23 diversity diversity NN cord-004222-z4butywi 104 24 is be VBZ cord-004222-z4butywi 104 25 expected expect VBN cord-004222-z4butywi 104 26 to to TO cord-004222-z4butywi 104 27 increase increase VB cord-004222-z4butywi 104 28 as as IN cord-004222-z4butywi 104 29 the the DT cord-004222-z4butywi 104 30 number number NN cord-004222-z4butywi 104 31 of of IN cord-004222-z4butywi 104 32 amino amino JJ cord-004222-z4butywi 104 33 acids acid NNS cord-004222-z4butywi 104 34 increases increase VBZ cord-004222-z4butywi 104 35 giving give VBG cord-004222-z4butywi 104 36 less less JJR cord-004222-z4butywi 104 37 of of IN cord-004222-z4butywi 104 38 a a DT cord-004222-z4butywi 104 39 chance chance NN cord-004222-z4butywi 104 40 for for IN cord-004222-z4butywi 104 41 sharing sharing NN cord-004222-z4butywi 104 42 . . . cord-004222-z4butywi 105 1 VH VH NNP cord-004222-z4butywi 105 2 gene gene NN cord-004222-z4butywi 105 3 family family NN cord-004222-z4butywi 105 4 usage usage NN cord-004222-z4butywi 105 5 between between IN cord-004222-z4butywi 105 6 shared shared JJ cord-004222-z4butywi 105 7 and and CC cord-004222-z4butywi 105 8 unshared unshared JJ cord-004222-z4butywi 105 9 clonotypes clonotype NNS cord-004222-z4butywi 105 10 indicates indicate VBZ cord-004222-z4butywi 105 11 no no DT cord-004222-z4butywi 105 12 major major JJ cord-004222-z4butywi 105 13 differences difference NNS cord-004222-z4butywi 105 14 ( ( -LRB- cord-004222-z4butywi 105 15 Fig Fig NNP cord-004222-z4butywi 105 16 . . . cord-004222-z4butywi 105 17 4d 4d CD cord-004222-z4butywi 105 18 ) ) -RRB- cord-004222-z4butywi 105 19 . . . cord-004222-z4butywi 106 1 Sequence sequence NN cord-004222-z4butywi 106 2 logos logo NNS cord-004222-z4butywi 106 3 for for IN cord-004222-z4butywi 106 4 8 8 CD cord-004222-z4butywi 106 5 amino amino NN cord-004222-z4butywi 106 6 acid acid NN cord-004222-z4butywi 106 7 long long RB cord-004222-z4butywi 107 1 ( ( -LRB- cord-004222-z4butywi 107 2 Fig Fig NNP cord-004222-z4butywi 107 3 . . . cord-004222-z4butywi 107 4 4e 4e LS cord-004222-z4butywi 107 5 ) ) -RRB- cord-004222-z4butywi 107 6 and and CC cord-004222-z4butywi 108 1 13 13 CD cord-004222-z4butywi 108 2 amino amino NN cord-004222-z4butywi 108 3 acid acid NN cord-004222-z4butywi 108 4 long long RB cord-004222-z4butywi 109 1 ( ( -LRB- cord-004222-z4butywi 109 2 Fig Fig NNP cord-004222-z4butywi 109 3 . . . cord-004222-z4butywi 109 4 4e 4e LS cord-004222-z4butywi 109 5 ) ) -RRB- cord-004222-z4butywi 110 1 CDHR3s cdhr3s JJ cord-004222-z4butywi 110 2 from from IN cord-004222-z4butywi 110 3 both both CC cord-004222-z4butywi 110 4 shared share VBN cord-004222-z4butywi 110 5 and and CC cord-004222-z4butywi 110 6 unshared unshared JJ cord-004222-z4butywi 110 7 fractions fraction NNS cord-004222-z4butywi 110 8 were be VBD cord-004222-z4butywi 110 9 made make VBN cord-004222-z4butywi 110 10 and and CC cord-004222-z4butywi 110 11 indicate indicate VB cord-004222-z4butywi 110 12 broad broad JJ cord-004222-z4butywi 110 13 similarity similarity NN cord-004222-z4butywi 110 14 between between IN cord-004222-z4butywi 110 15 the the DT cord-004222-z4butywi 110 16 two two CD cord-004222-z4butywi 110 17 fractions fraction NNS cord-004222-z4butywi 110 18 . . . cord-004222-z4butywi 111 1 We -PRON- PRP cord-004222-z4butywi 111 2 set set VBD cord-004222-z4butywi 111 3 out out RP cord-004222-z4butywi 111 4 to to TO cord-004222-z4butywi 111 5 determine determine VB cord-004222-z4butywi 111 6 commonalities commonality NNS cord-004222-z4butywi 111 7 and and CC cord-004222-z4butywi 111 8 differences difference NNS cord-004222-z4butywi 111 9 between between IN cord-004222-z4butywi 111 10 OmniRat omnirat NN cord-004222-z4butywi 111 11 and and CC cord-004222-z4butywi 111 12 human human JJ cord-004222-z4butywi 111 13 antibody antibody NN cord-004222-z4butywi 111 14 repertoires repertoire NNS cord-004222-z4butywi 111 15 to to TO cord-004222-z4butywi 111 16 be be VB cord-004222-z4butywi 111 17 used use VBN cord-004222-z4butywi 111 18 as as IN cord-004222-z4butywi 111 19 a a DT cord-004222-z4butywi 111 20 reference reference NN cord-004222-z4butywi 111 21 for for IN cord-004222-z4butywi 111 22 vaccine vaccine NN cord-004222-z4butywi 111 23 studies study NNS cord-004222-z4butywi 111 24 . . . cord-004222-z4butywi 112 1 Our -PRON- PRP$ cord-004222-z4butywi 112 2 results result NNS cord-004222-z4butywi 112 3 show show VBP cord-004222-z4butywi 112 4 that that IN cord-004222-z4butywi 112 5 there there EX cord-004222-z4butywi 112 6 exists exist VBZ cord-004222-z4butywi 112 7 substantial substantial JJ cord-004222-z4butywi 112 8 variation variation NN cord-004222-z4butywi 112 9 in in IN cord-004222-z4butywi 112 10 gene gene NN cord-004222-z4butywi 112 11 usage usage NN cord-004222-z4butywi 112 12 frequencies frequency NNS cord-004222-z4butywi 112 13 and and CC cord-004222-z4butywi 112 14 elements element NNS cord-004222-z4butywi 112 15 of of IN cord-004222-z4butywi 112 16 recombination recombination NN cord-004222-z4butywi 112 17 , , , cord-004222-z4butywi 112 18 indicating indicate VBG cord-004222-z4butywi 112 19 specific specific JJ cord-004222-z4butywi 112 20 limitations limitation NNS cord-004222-z4butywi 112 21 of of IN cord-004222-z4butywi 112 22 this this DT cord-004222-z4butywi 112 23 animal animal NN cord-004222-z4butywi 112 24 model model NN cord-004222-z4butywi 112 25 for for IN cord-004222-z4butywi 112 26 predicting predict VBG cord-004222-z4butywi 112 27 the the DT cord-004222-z4butywi 112 28 human human JJ cord-004222-z4butywi 112 29 immune immune JJ cord-004222-z4butywi 112 30 response response NN cord-004222-z4butywi 112 31 . . . cord-004222-z4butywi 113 1 We -PRON- PRP cord-004222-z4butywi 113 2 found find VBD cord-004222-z4butywi 113 3 that that IN cord-004222-z4butywi 113 4 by by IN cord-004222-z4butywi 113 5 performing perform VBG cord-004222-z4butywi 113 6 hierarchical hierarchical JJ cord-004222-z4butywi 113 7 clustering clustering NN cord-004222-z4butywi 113 8 on on IN cord-004222-z4butywi 113 9 gene gene NN cord-004222-z4butywi 113 10 segment segment NN cord-004222-z4butywi 113 11 usage usage NN cord-004222-z4butywi 113 12 , , , cord-004222-z4butywi 113 13 repertoires repertoire NNS cord-004222-z4butywi 113 14 clustered cluster VBN cord-004222-z4butywi 113 15 together together RB cord-004222-z4butywi 113 16 by by IN cord-004222-z4butywi 113 17 both both DT cord-004222-z4butywi 113 18 species specie NNS cord-004222-z4butywi 113 19 and and CC cord-004222-z4butywi 113 20 tissue tissue NN cord-004222-z4butywi 113 21 . . . cord-004222-z4butywi 114 1 Differences difference NNS cord-004222-z4butywi 114 2 in in IN cord-004222-z4butywi 114 3 gene gene NN cord-004222-z4butywi 114 4 segment segment NN cord-004222-z4butywi 114 5 usage usage NN cord-004222-z4butywi 114 6 between between IN cord-004222-z4butywi 114 7 transgenic transgenic JJ cord-004222-z4butywi 114 8 animal animal NN cord-004222-z4butywi 114 9 models model NNS cord-004222-z4butywi 114 10 and and CC cord-004222-z4butywi 114 11 humans human NNS cord-004222-z4butywi 114 12 , , , cord-004222-z4butywi 114 13 as as RB cord-004222-z4butywi 114 14 well well RB cord-004222-z4butywi 114 15 as as IN cord-004222-z4butywi 114 16 between between IN cord-004222-z4butywi 114 17 tissues tissue NNS cord-004222-z4butywi 114 18 are be VBP cord-004222-z4butywi 114 19 expected expect VBN cord-004222-z4butywi 114 20 . . . cord-004222-z4butywi 115 1 For for IN cord-004222-z4butywi 115 2 example example NN cord-004222-z4butywi 115 3 , , , cord-004222-z4butywi 115 4 multiple multiple JJ cord-004222-z4butywi 115 5 human human JJ cord-004222-z4butywi 115 6 Ig ig NN cord-004222-z4butywi 115 7 loci locus NNS cord-004222-z4butywi 115 8 transgenic transgenic JJ cord-004222-z4butywi 115 9 rodents rodent NNS cord-004222-z4butywi 115 10 are be VBP cord-004222-z4butywi 115 11 reported report VBN cord-004222-z4butywi 115 12 to to TO cord-004222-z4butywi 115 13 have have VB cord-004222-z4butywi 115 14 gene gene NN cord-004222-z4butywi 115 15 usage usage NN cord-004222-z4butywi 115 16 profiles profile NNS cord-004222-z4butywi 115 17 that that WDT cord-004222-z4butywi 115 18 slightly slightly RB cord-004222-z4butywi 115 19 vary vary VBP cord-004222-z4butywi 115 20 from from IN cord-004222-z4butywi 115 21 that that DT cord-004222-z4butywi 115 22 of of IN cord-004222-z4butywi 115 23 humans human NNS cord-004222-z4butywi 115 24 25 25 CD cord-004222-z4butywi 115 25 , , , cord-004222-z4butywi 115 26 26 26 CD cord-004222-z4butywi 115 27 . . . cord-004222-z4butywi 116 1 Furthermore furthermore RB cord-004222-z4butywi 116 2 , , , cord-004222-z4butywi 116 3 antibody antibody NN cord-004222-z4butywi 116 4 repertoires repertoire NNS cord-004222-z4butywi 116 5 from from IN cord-004222-z4butywi 116 6 separate separate JJ cord-004222-z4butywi 116 7 human human JJ cord-004222-z4butywi 116 8 tissues tissue NNS cord-004222-z4butywi 116 9 are be VBP cord-004222-z4butywi 116 10 known know VBN cord-004222-z4butywi 116 11 to to TO cord-004222-z4butywi 116 12 deviate deviate VB cord-004222-z4butywi 116 13 strongly strongly RB cord-004222-z4butywi 116 14 enough enough RB cord-004222-z4butywi 116 15 to to TO cord-004222-z4butywi 116 16 be be VB cord-004222-z4butywi 116 17 clustered cluster VBN cord-004222-z4butywi 116 18 by by IN cord-004222-z4butywi 116 19 hierarchical hierarchical JJ cord-004222-z4butywi 116 20 clustering clustering NN cord-004222-z4butywi 116 21 27 27 CD cord-004222-z4butywi 116 22 . . . cord-004222-z4butywi 117 1 In in IN cord-004222-z4butywi 117 2 our -PRON- PRP$ cord-004222-z4butywi 117 3 case case NN cord-004222-z4butywi 117 4 , , , cord-004222-z4butywi 117 5 the the DT cord-004222-z4butywi 117 6 lymph lymph NN cord-004222-z4butywi 117 7 node node NN cord-004222-z4butywi 117 8 repertoire repertoire NN cord-004222-z4butywi 117 9 from from IN cord-004222-z4butywi 117 10 the the DT cord-004222-z4butywi 117 11 OmniRat OmniRat NNP cord-004222-z4butywi 117 12 was be VBD cord-004222-z4butywi 117 13 most most RBS cord-004222-z4butywi 117 14 likely likely RB cord-004222-z4butywi 117 15 able able JJ cord-004222-z4butywi 117 16 to to TO cord-004222-z4butywi 117 17 be be VB cord-004222-z4butywi 117 18 distinguished distinguish VBN cord-004222-z4butywi 117 19 from from IN cord-004222-z4butywi 117 20 that that DT cord-004222-z4butywi 117 21 of of IN cord-004222-z4butywi 117 22 the the DT cord-004222-z4butywi 117 23 spleen spleen NN cord-004222-z4butywi 117 24 due due IN cord-004222-z4butywi 117 25 to to IN cord-004222-z4butywi 117 26 the the DT cord-004222-z4butywi 117 27 increased increase VBN cord-004222-z4butywi 117 28 presence presence NN cord-004222-z4butywi 117 29 of of IN cord-004222-z4butywi 117 30 antigen antigen NN cord-004222-z4butywi 117 31 - - HYPH cord-004222-z4butywi 117 32 experienced experience VBN cord-004222-z4butywi 117 33 B B NNP cord-004222-z4butywi 117 34 cells cell NNS cord-004222-z4butywi 117 35 in in IN cord-004222-z4butywi 117 36 the the DT cord-004222-z4butywi 117 37 latter latter JJ cord-004222-z4butywi 117 38 as as IN cord-004222-z4butywi 117 39 shown show VBN cord-004222-z4butywi 117 40 by by IN cord-004222-z4butywi 117 41 somatic somatic JJ cord-004222-z4butywi 117 42 hypermutation hypermutation NN cord-004222-z4butywi 117 43 and and CC cord-004222-z4butywi 117 44 class class NN cord-004222-z4butywi 117 45 - - HYPH cord-004222-z4butywi 117 46 switched switch VBN cord-004222-z4butywi 117 47 transcript transcript NN cord-004222-z4butywi 117 48 frequencies frequency NNS cord-004222-z4butywi 117 49 . . . cord-004222-z4butywi 118 1 This this DT cord-004222-z4butywi 118 2 indicates indicate VBZ cord-004222-z4butywi 118 3 that that IN cord-004222-z4butywi 118 4 tissue tissue NN cord-004222-z4butywi 118 5 selection selection NN cord-004222-z4butywi 118 6 will will MD cord-004222-z4butywi 118 7 affect affect VB cord-004222-z4butywi 118 8 the the DT cord-004222-z4butywi 118 9 outcome outcome NN cord-004222-z4butywi 118 10 of of IN cord-004222-z4butywi 118 11 an an DT cord-004222-z4butywi 118 12 antibody antibody NN cord-004222-z4butywi 118 13 discovery discovery NN cord-004222-z4butywi 118 14 campaign campaign NN cord-004222-z4butywi 118 15 and and CC cord-004222-z4butywi 118 16 reinforces reinforce VBZ cord-004222-z4butywi 118 17 evidence evidence NN cord-004222-z4butywi 118 18 for for IN cord-004222-z4butywi 118 19 normal normal JJ cord-004222-z4butywi 118 20 B b NN cord-004222-z4butywi 118 21 cell cell NN cord-004222-z4butywi 118 22 development development NN cord-004222-z4butywi 118 23 by by IN cord-004222-z4butywi 118 24 suggesting suggest VBG cord-004222-z4butywi 118 25 the the DT cord-004222-z4butywi 118 26 existence existence NN cord-004222-z4butywi 118 27 of of IN cord-004222-z4butywi 118 28 affinity affinity NN cord-004222-z4butywi 118 29 maturation maturation NN cord-004222-z4butywi 118 30 . . . cord-004222-z4butywi 119 1 Investigation investigation NN cord-004222-z4butywi 119 2 into into IN cord-004222-z4butywi 119 3 CDR3 CDR3 NNP cord-004222-z4butywi 119 4 length length NN cord-004222-z4butywi 119 5 distributions distribution NNS cord-004222-z4butywi 119 6 revealed reveal VBD cord-004222-z4butywi 119 7 that that IN cord-004222-z4butywi 119 8 the the DT cord-004222-z4butywi 119 9 OmniRat OmniRat NNP cord-004222-z4butywi 119 10 prefers prefer VBZ cord-004222-z4butywi 119 11 shorter short JJR cord-004222-z4butywi 119 12 CDRH3s cdrh3s NN cord-004222-z4butywi 119 13 as as IN cord-004222-z4butywi 119 14 compared compare VBN cord-004222-z4butywi 119 15 to to IN cord-004222-z4butywi 119 16 humans human NNS cord-004222-z4butywi 119 17 . . . cord-004222-z4butywi 120 1 Interestingly interestingly RB cord-004222-z4butywi 120 2 , , , cord-004222-z4butywi 120 3 the the DT cord-004222-z4butywi 120 4 mechanisms mechanism NNS cord-004222-z4butywi 120 5 of of IN cord-004222-z4butywi 120 6 this this DT cord-004222-z4butywi 120 7 preference preference NN cord-004222-z4butywi 120 8 are be VBP cord-004222-z4butywi 120 9 due due JJ cord-004222-z4butywi 120 10 to to IN cord-004222-z4butywi 120 11 decreased decrease VBN cord-004222-z4butywi 120 12 N n CD cord-004222-z4butywi 120 13 additions addition NNS cord-004222-z4butywi 120 14 , , , cord-004222-z4butywi 120 15 and and CC cord-004222-z4butywi 120 16 a a DT cord-004222-z4butywi 120 17 tendency tendency NN cord-004222-z4butywi 120 18 to to TO cord-004222-z4butywi 120 19 incorporate incorporate VB cord-004222-z4butywi 120 20 shorter short JJR cord-004222-z4butywi 120 21 DH dh NN cord-004222-z4butywi 120 22 gene gene NN cord-004222-z4butywi 120 23 segments segment NNS cord-004222-z4butywi 120 24 . . . cord-004222-z4butywi 121 1 This this DT cord-004222-z4butywi 121 2 result result NN cord-004222-z4butywi 121 3 has have VBZ cord-004222-z4butywi 121 4 also also RB cord-004222-z4butywi 121 5 been be VBN cord-004222-z4butywi 121 6 seen see VBN cord-004222-z4butywi 121 7 in in IN cord-004222-z4butywi 121 8 multiple multiple JJ cord-004222-z4butywi 121 9 other other JJ cord-004222-z4butywi 121 10 transgenic transgenic JJ cord-004222-z4butywi 121 11 and and CC cord-004222-z4butywi 121 12 wild wild JJ cord-004222-z4butywi 121 13 - - HYPH cord-004222-z4butywi 121 14 type type NN cord-004222-z4butywi 121 15 rodents rodent NNS cord-004222-z4butywi 121 16 25 25 CD cord-004222-z4butywi 121 17 , , , cord-004222-z4butywi 121 18 26 26 CD cord-004222-z4butywi 121 19 , , , cord-004222-z4butywi 121 20 28 28 CD cord-004222-z4butywi 121 21 , , , cord-004222-z4butywi 121 22 29 29 CD cord-004222-z4butywi 121 23 . . . cord-004222-z4butywi 122 1 The the DT cord-004222-z4butywi 122 2 specific specific JJ cord-004222-z4butywi 122 3 reasons reason NNS cord-004222-z4butywi 122 4 remain remain VBP cord-004222-z4butywi 122 5 unclear unclear JJ cord-004222-z4butywi 122 6 , , , cord-004222-z4butywi 122 7 although although IN cord-004222-z4butywi 122 8 the the DT cord-004222-z4butywi 122 9 observation observation NN cord-004222-z4butywi 122 10 that that IN cord-004222-z4butywi 122 11 wild wild JJ cord-004222-z4butywi 122 12 - - HYPH cord-004222-z4butywi 122 13 type type NN cord-004222-z4butywi 122 14 rat rat NN cord-004222-z4butywi 122 15 germline germline NN cord-004222-z4butywi 122 16 D d NN cord-004222-z4butywi 122 17 gene gene NN cord-004222-z4butywi 122 18 segment segment NN cord-004222-z4butywi 122 19 lengths length NNS cord-004222-z4butywi 122 20 are be VBP cord-004222-z4butywi 122 21 shorter short JJR cord-004222-z4butywi 122 22 suggests suggest VBZ cord-004222-z4butywi 122 23 intrinsic intrinsic JJ cord-004222-z4butywi 122 24 species species NN cord-004222-z4butywi 122 25 - - HYPH cord-004222-z4butywi 122 26 specific specific JJ cord-004222-z4butywi 122 27 mechanisms mechanism NNS cord-004222-z4butywi 122 28 of of IN cord-004222-z4butywi 122 29 selection selection NN cord-004222-z4butywi 122 30 as as RB cord-004222-z4butywi 122 31 well well RB cord-004222-z4butywi 122 32 as as IN cord-004222-z4butywi 122 33 differences difference NNS cord-004222-z4butywi 122 34 in in IN cord-004222-z4butywi 122 35 TdT tdt NN cord-004222-z4butywi 122 36 expression expression NN cord-004222-z4butywi 122 37 during during IN cord-004222-z4butywi 122 38 bone bone NN cord-004222-z4butywi 122 39 marrow marrow NN cord-004222-z4butywi 122 40 B b NN cord-004222-z4butywi 122 41 cell cell NN cord-004222-z4butywi 122 42 development development NN cord-004222-z4butywi 122 43 . . . cord-004222-z4butywi 123 1 We -PRON- PRP cord-004222-z4butywi 123 2 further further RB cord-004222-z4butywi 123 3 speculate speculate VBP cord-004222-z4butywi 123 4 that that IN cord-004222-z4butywi 123 5 another another DT cord-004222-z4butywi 123 6 possible possible JJ cord-004222-z4butywi 123 7 reason reason NN cord-004222-z4butywi 123 8 for for IN cord-004222-z4butywi 123 9 intra intra JJ cord-004222-z4butywi 123 10 - - JJ cord-004222-z4butywi 123 11 species species JJ cord-004222-z4butywi 123 12 variation variation NN cord-004222-z4butywi 123 13 can can MD cord-004222-z4butywi 123 14 be be VB cord-004222-z4butywi 123 15 attributed attribute VBN cord-004222-z4butywi 123 16 to to IN cord-004222-z4butywi 123 17 distinct distinct JJ cord-004222-z4butywi 123 18 prior prior JJ cord-004222-z4butywi 123 19 antigen antigen NN cord-004222-z4butywi 123 20 exposure exposure NN cord-004222-z4butywi 123 21 and and CC cord-004222-z4butywi 123 22 divergent divergent JJ cord-004222-z4butywi 123 23 gut gut NN cord-004222-z4butywi 123 24 microbiomes microbiome NNS cord-004222-z4butywi 123 25 30 30 CD cord-004222-z4butywi 123 26 , , , cord-004222-z4butywi 123 27 31 31 CD cord-004222-z4butywi 123 28 . . . cord-004222-z4butywi 124 1 The the DT cord-004222-z4butywi 124 2 diversity diversity NN cord-004222-z4butywi 124 3 of of IN cord-004222-z4butywi 124 4 the the DT cord-004222-z4butywi 124 5 OmniRat OmniRat NNP cord-004222-z4butywi 124 6 heavy heavy JJ cord-004222-z4butywi 124 7 chain chain NN cord-004222-z4butywi 124 8 repertoire repertoire NN cord-004222-z4butywi 124 9 was be VBD cord-004222-z4butywi 124 10 shown show VBN cord-004222-z4butywi 124 11 to to TO cord-004222-z4butywi 124 12 be be VB cord-004222-z4butywi 124 13 slightly slightly RB cord-004222-z4butywi 124 14 lower low JJR cord-004222-z4butywi 124 15 than than IN cord-004222-z4butywi 124 16 that that DT cord-004222-z4butywi 124 17 in in IN cord-004222-z4butywi 124 18 humans human NNS cord-004222-z4butywi 124 19 . . . cord-004222-z4butywi 125 1 Our -PRON- PRP$ cord-004222-z4butywi 125 2 results result NNS cord-004222-z4butywi 125 3 indicate indicate VBP cord-004222-z4butywi 125 4 biased biased JJ cord-004222-z4butywi 125 5 gene gene NN cord-004222-z4butywi 125 6 usage usage NN cord-004222-z4butywi 125 7 and and CC cord-004222-z4butywi 125 8 decreased decrease VBD cord-004222-z4butywi 125 9 junctional junctional JJ cord-004222-z4butywi 125 10 diversity diversity NN cord-004222-z4butywi 125 11 are be VBP cord-004222-z4butywi 125 12 the the DT cord-004222-z4butywi 125 13 primary primary JJ cord-004222-z4butywi 125 14 reasons reason NNS cord-004222-z4butywi 125 15 for for IN cord-004222-z4butywi 125 16 the the DT cord-004222-z4butywi 125 17 resulting result VBG cord-004222-z4butywi 125 18 repertoire repertoire NN cord-004222-z4butywi 125 19 diversity diversity NN cord-004222-z4butywi 125 20 estimate estimate NN cord-004222-z4butywi 125 21 comparisons comparison NNS cord-004222-z4butywi 125 22 . . . cord-004222-z4butywi 126 1 We -PRON- PRP cord-004222-z4butywi 126 2 also also RB cord-004222-z4butywi 126 3 showed show VBD cord-004222-z4butywi 126 4 that that IN cord-004222-z4butywi 126 5 there there EX cord-004222-z4butywi 126 6 is be VBZ cord-004222-z4butywi 126 7 a a DT cord-004222-z4butywi 126 8 much much RB cord-004222-z4butywi 126 9 higher high JJR cord-004222-z4butywi 126 10 frequency frequency NN cord-004222-z4butywi 126 11 of of IN cord-004222-z4butywi 126 12 ' ' `` cord-004222-z4butywi 126 13 public public JJ cord-004222-z4butywi 126 14 clonotypes clonotype NNS cord-004222-z4butywi 126 15 ' ' POS cord-004222-z4butywi 126 16 or or CC cord-004222-z4butywi 126 17 clonotypes clonotype NNS cord-004222-z4butywi 126 18 shared share VBN cord-004222-z4butywi 126 19 between between IN cord-004222-z4butywi 126 20 members member NNS cord-004222-z4butywi 126 21 of of IN cord-004222-z4butywi 126 22 this this DT cord-004222-z4butywi 126 23 species specie NNS cord-004222-z4butywi 126 24 than than IN cord-004222-z4butywi 126 25 previously previously RB cord-004222-z4butywi 126 26 reported report VBN cord-004222-z4butywi 126 27 in in IN cord-004222-z4butywi 126 28 humans human NNS cord-004222-z4butywi 126 29 13 13 CD cord-004222-z4butywi 126 30 , , , cord-004222-z4butywi 126 31 32 32 CD cord-004222-z4butywi 126 32 . . . cord-004222-z4butywi 127 1 Lower low JJR cord-004222-z4butywi 127 2 sequence sequence NN cord-004222-z4butywi 127 3 diversity diversity NN cord-004222-z4butywi 127 4 combined combine VBN cord-004222-z4butywi 127 5 with with IN cord-004222-z4butywi 127 6 identical identical JJ cord-004222-z4butywi 127 7 genetic genetic JJ cord-004222-z4butywi 127 8 background background NN cord-004222-z4butywi 127 9 and and CC cord-004222-z4butywi 127 10 highly highly RB cord-004222-z4butywi 127 11 similar similar JJ cord-004222-z4butywi 127 12 gene gene NN cord-004222-z4butywi 127 13 usage usage NN cord-004222-z4butywi 127 14 are be VBP cord-004222-z4butywi 127 15 possible possible JJ cord-004222-z4butywi 127 16 reasons reason NNS cord-004222-z4butywi 127 17 for for IN cord-004222-z4butywi 127 18 this this DT cord-004222-z4butywi 127 19 result result NN cord-004222-z4butywi 127 20 . . . cord-004222-z4butywi 128 1 In in IN cord-004222-z4butywi 128 2 summary summary NN cord-004222-z4butywi 128 3 , , , cord-004222-z4butywi 128 4 we -PRON- PRP cord-004222-z4butywi 128 5 have have VBP cord-004222-z4butywi 128 6 determined determine VBN cord-004222-z4butywi 128 7 specific specific JJ cord-004222-z4butywi 128 8 differences difference NNS cord-004222-z4butywi 128 9 between between IN cord-004222-z4butywi 128 10 the the DT cord-004222-z4butywi 128 11 OmniRat OmniRat NNP cord-004222-z4butywi 128 12 and and CC cord-004222-z4butywi 128 13 human human JJ cord-004222-z4butywi 128 14 antibody antibody NN cord-004222-z4butywi 128 15 repertoires repertoire NNS cord-004222-z4butywi 128 16 which which WDT cord-004222-z4butywi 128 17 must must MD cord-004222-z4butywi 128 18 be be VB cord-004222-z4butywi 128 19 taken take VBN cord-004222-z4butywi 128 20 into into IN cord-004222-z4butywi 128 21 careful careful JJ cord-004222-z4butywi 128 22 consideration consideration NN cord-004222-z4butywi 128 23 when when WRB cord-004222-z4butywi 128 24 evaluating evaluate VBG cord-004222-z4butywi 128 25 an an DT cord-004222-z4butywi 128 26 antibody antibody NN cord-004222-z4butywi 128 27 response response NN cord-004222-z4butywi 128 28 in in IN cord-004222-z4butywi 128 29 order order NN cord-004222-z4butywi 128 30 to to TO cord-004222-z4butywi 128 31 make make VB cord-004222-z4butywi 128 32 predictions prediction NNS cord-004222-z4butywi 128 33 for for IN cord-004222-z4butywi 128 34 human human JJ cord-004222-z4butywi 128 35 subjects subject NNS cord-004222-z4butywi 128 36 . . . cord-004222-z4butywi 129 1 We -PRON- PRP cord-004222-z4butywi 129 2 have have VBP cord-004222-z4butywi 129 3 also also RB cord-004222-z4butywi 129 4 shown show VBN cord-004222-z4butywi 129 5 that that IN cord-004222-z4butywi 129 6 this this DT cord-004222-z4butywi 129 7 animal animal NN cord-004222-z4butywi 129 8 's 's POS cord-004222-z4butywi 129 9 antibodies antibody NNS cord-004222-z4butywi 129 10 show show VBP cord-004222-z4butywi 129 11 signs sign NNS cord-004222-z4butywi 129 12 of of IN cord-004222-z4butywi 129 13 class class NN cord-004222-z4butywi 129 14 switch switch NN cord-004222-z4butywi 129 15 recombination recombination NN cord-004222-z4butywi 129 16 , , , cord-004222-z4butywi 129 17 somatic somatic JJ cord-004222-z4butywi 129 18 hypermutation hypermutation NN cord-004222-z4butywi 129 19 and and CC cord-004222-z4butywi 129 20 large large JJ cord-004222-z4butywi 129 21 diversity diversity NN cord-004222-z4butywi 129 22 supporting support VBG cord-004222-z4butywi 129 23 its -PRON- PRP$ cord-004222-z4butywi 129 24 value value NN cord-004222-z4butywi 129 25 for for IN cord-004222-z4butywi 129 26 the the DT cord-004222-z4butywi 129 27 discovery discovery NN cord-004222-z4butywi 129 28 of of IN cord-004222-z4butywi 129 29 monoclonal monoclonal JJ cord-004222-z4butywi 129 30 antibodies antibody NNS cord-004222-z4butywi 129 31 to to IN cord-004222-z4butywi 129 32 targets target NNS cord-004222-z4butywi 129 33 that that WDT cord-004222-z4butywi 129 34 may may MD cord-004222-z4butywi 129 35 not not RB cord-004222-z4butywi 129 36 be be VB cord-004222-z4butywi 129 37 immunogenic immunogenic JJ cord-004222-z4butywi 129 38 in in IN cord-004222-z4butywi 129 39 other other JJ cord-004222-z4butywi 129 40 models model NNS cord-004222-z4butywi 129 41 . . . cord-004222-z4butywi 130 1 Even even RB cord-004222-z4butywi 130 2 though though IN cord-004222-z4butywi 130 3 a a DT cord-004222-z4butywi 130 4 high high JJ cord-004222-z4butywi 130 5 degree degree NN cord-004222-z4butywi 130 6 of of IN cord-004222-z4butywi 130 7 variation variation NN cord-004222-z4butywi 130 8 exists exist VBZ cord-004222-z4butywi 130 9 , , , cord-004222-z4butywi 130 10 we -PRON- PRP cord-004222-z4butywi 130 11 still still RB cord-004222-z4butywi 130 12 found find VBD cord-004222-z4butywi 130 13 many many JJ cord-004222-z4butywi 130 14 clonotypes clonotype NNS cord-004222-z4butywi 130 15 to to TO cord-004222-z4butywi 130 16 be be VB cord-004222-z4butywi 130 17 shared share VBN cord-004222-z4butywi 130 18 between between IN cord-004222-z4butywi 130 19 the the DT cord-004222-z4butywi 130 20 species species NN cord-004222-z4butywi 130 21 pools pool NNS cord-004222-z4butywi 130 22 . . . cord-004222-z4butywi 131 1 Finally finally RB cord-004222-z4butywi 131 2 , , , cord-004222-z4butywi 131 3 more more JJR cord-004222-z4butywi 131 4 studies study NNS cord-004222-z4butywi 131 5 will will MD cord-004222-z4butywi 131 6 need need VB cord-004222-z4butywi 131 7 to to TO cord-004222-z4butywi 131 8 be be VB cord-004222-z4butywi 131 9 done do VBN cord-004222-z4butywi 131 10 in in IN cord-004222-z4butywi 131 11 order order NN cord-004222-z4butywi 131 12 to to TO cord-004222-z4butywi 131 13 characterize characterize VB cord-004222-z4butywi 131 14 OmniRat OmniRat NNP cord-004222-z4butywi 131 15 serum serum NN cord-004222-z4butywi 131 16 and and CC cord-004222-z4butywi 131 17 memory memory NN cord-004222-z4butywi 131 18 B b NN cord-004222-z4butywi 131 19 cell cell NN cord-004222-z4butywi 131 20 responses response NNS cord-004222-z4butywi 131 21 to to IN cord-004222-z4butywi 131 22 immunogens immunogen NNS cord-004222-z4butywi 131 23 . . . cord-004222-z4butywi 132 1 Next next JJ cord-004222-z4butywi 132 2 - - HYPH cord-004222-z4butywi 132 3 generation generation NN cord-004222-z4butywi 132 4 sequencing sequencing NN cord-004222-z4butywi 132 5 of of IN cord-004222-z4butywi 132 6 OmniRat omnirat NN cord-004222-z4butywi 132 7 antibody antibody NN cord-004222-z4butywi 132 8 repertoires repertoire NNS cord-004222-z4butywi 132 9 . . . cord-004222-z4butywi 133 1 Total Total NNP cord-004222-z4butywi 133 2 RNA RNA NNP cord-004222-z4butywi 133 3 from from IN cord-004222-z4butywi 133 4 spleens spleen NNS cord-004222-z4butywi 133 5 and and CC cord-004222-z4butywi 133 6 lymph lymph NN cord-004222-z4butywi 133 7 nodes node NNS cord-004222-z4butywi 133 8 was be VBD cord-004222-z4butywi 133 9 extracted extract VBN cord-004222-z4butywi 133 10 ( ( -LRB- cord-004222-z4butywi 133 11 RNeasy RNeasy NNP cord-004222-z4butywi 133 12 Maxi Maxi NNP cord-004222-z4butywi 133 13 Kit kit NN cord-004222-z4butywi 133 14 , , , cord-004222-z4butywi 133 15 Qiagen Qiagen NNP cord-004222-z4butywi 133 16 ) ) -RRB- cord-004222-z4butywi 133 17 from from IN cord-004222-z4butywi 133 18 each each DT cord-004222-z4butywi 133 19 unimmunized unimmunized JJ cord-004222-z4butywi 133 20 heavy heavy JJ cord-004222-z4butywi 133 21 chain chain NN cord-004222-z4butywi 133 22 and and CC cord-004222-z4butywi 133 23 kappa kappa NN cord-004222-z4butywi 133 24 chain chain NN cord-004222-z4butywi 134 1 only only RB cord-004222-z4butywi 134 2 transgenic transgenic JJ cord-004222-z4butywi 134 3 rat rat NN cord-004222-z4butywi 134 4 ( ( -LRB- cord-004222-z4butywi 134 5 OmniRat omnirat UH cord-004222-z4butywi 134 6 , , , cord-004222-z4butywi 134 7 Open Open NNP cord-004222-z4butywi 134 8 Monoclonal Monoclonal NNP cord-004222-z4butywi 134 9 Technology Technology NNP cord-004222-z4butywi 134 10 Inc. Inc. NNP cord-004222-z4butywi 134 11 , , , cord-004222-z4butywi 134 12 Palo Palo NNP cord-004222-z4butywi 134 13 Alto Alto NNP cord-004222-z4butywi 134 14 , , , cord-004222-z4butywi 134 15 CA CA NNP cord-004222-z4butywi 134 16 , , , cord-004222-z4butywi 134 17 USA USA NNP cord-004222-z4butywi 134 18 ) ) -RRB- cord-004222-z4butywi 134 19 and and CC cord-004222-z4butywi 134 20 antibody antibody NN cord-004222-z4butywi 134 21 sequences sequence NNS cord-004222-z4butywi 134 22 were be VBD cord-004222-z4butywi 134 23 amplified amplify VBN cord-004222-z4butywi 134 24 as as IN cord-004222-z4butywi 134 25 previously previously RB cord-004222-z4butywi 134 26 described describe VBN cord-004222-z4butywi 134 27 13 13 CD cord-004222-z4butywi 134 28 except except IN cord-004222-z4butywi 134 29 for for IN cord-004222-z4butywi 134 30 different different JJ cord-004222-z4butywi 134 31 primers primer NNS cord-004222-z4butywi 134 32 used use VBN cord-004222-z4butywi 134 33 during during IN cord-004222-z4butywi 134 34 reverse reverse JJ cord-004222-z4butywi 134 35 transcription transcription NN cord-004222-z4butywi 134 36 ( ( -LRB- cord-004222-z4butywi 134 37 Table table NN cord-004222-z4butywi 134 38 S2 S2 NNP cord-004222-z4butywi 134 39 ) ) -RRB- cord-004222-z4butywi 134 40 . . . cord-004222-z4butywi 135 1 We -PRON- PRP cord-004222-z4butywi 135 2 chose choose VBD cord-004222-z4butywi 135 3 to to TO cord-004222-z4butywi 135 4 interrogate interrogate VB cord-004222-z4butywi 135 5 the the DT cord-004222-z4butywi 135 6 antibody antibody NN cord-004222-z4butywi 135 7 repertoires repertoire NNS cord-004222-z4butywi 135 8 found find VBN cord-004222-z4butywi 135 9 in in IN cord-004222-z4butywi 135 10 secondary secondary JJ cord-004222-z4butywi 135 11 lymphoid lymphoid JJ cord-004222-z4butywi 135 12 organs organ NNS cord-004222-z4butywi 135 13 as as IN cord-004222-z4butywi 135 14 opposed oppose VBN cord-004222-z4butywi 135 15 to to IN cord-004222-z4butywi 135 16 peripheral peripheral JJ cord-004222-z4butywi 135 17 blood blood NN cord-004222-z4butywi 135 18 due due IN cord-004222-z4butywi 135 19 to to IN cord-004222-z4butywi 135 20 the the DT cord-004222-z4butywi 135 21 higher high JJR cord-004222-z4butywi 135 22 number number NN cord-004222-z4butywi 135 23 of of IN cord-004222-z4butywi 135 24 B b NN cord-004222-z4butywi 135 25 cells cell NNS cord-004222-z4butywi 135 26 . . . cord-004222-z4butywi 136 1 Correct correct JJ cord-004222-z4butywi 136 2 PCR PCR NNP cord-004222-z4butywi 136 3 product product NN cord-004222-z4butywi 136 4 sizes size NNS cord-004222-z4butywi 136 5 were be VBD cord-004222-z4butywi 136 6 verified verify VBN cord-004222-z4butywi 136 7 on on IN cord-004222-z4butywi 136 8 an an DT cord-004222-z4butywi 136 9 agarose agarose JJ cord-004222-z4butywi 136 10 gel gel NN cord-004222-z4butywi 136 11 ( ( -LRB- cord-004222-z4butywi 136 12 E e NN cord-004222-z4butywi 136 13 - - HYPH cord-004222-z4butywi 136 14 Gel gel NN cord-004222-z4butywi 136 15 EX EX NNP cord-004222-z4butywi 136 16 ; ; : cord-004222-z4butywi 136 17 Invitrogen Invitrogen NNP cord-004222-z4butywi 136 18 ) ) -RRB- cord-004222-z4butywi 136 19 and and CC cord-004222-z4butywi 136 20 quantified quantify VBN cord-004222-z4butywi 136 21 with with IN cord-004222-z4butywi 136 22 fluorometry fluorometry NN cord-004222-z4butywi 136 23 ( ( -LRB- cord-004222-z4butywi 136 24 Qubit qubit NN cord-004222-z4butywi 136 25 ; ; : cord-004222-z4butywi 136 26 Life Life NNP cord-004222-z4butywi 136 27 Technologies Technologies NNPS cord-004222-z4butywi 136 28 ) ) -RRB- cord-004222-z4butywi 136 29 , , , cord-004222-z4butywi 136 30 pooled pool VBN cord-004222-z4butywi 136 31 at at IN cord-004222-z4butywi 136 32 approximately approximately RB cord-004222-z4butywi 136 33 equimolar equimolar JJ cord-004222-z4butywi 136 34 concentrations concentration NNS cord-004222-z4butywi 136 35 and and CC cord-004222-z4butywi 136 36 each each DT cord-004222-z4butywi 136 37 sample sample NN cord-004222-z4butywi 136 38 pool pool NN cord-004222-z4butywi 136 39 was be VBD cord-004222-z4butywi 136 40 re re VBN cord-004222-z4butywi 136 41 - - VBN cord-004222-z4butywi 136 42 quantified quantify VBN cord-004222-z4butywi 136 43 before before IN cord-004222-z4butywi 136 44 sequencing sequence VBG cord-004222-z4butywi 136 45 on on IN cord-004222-z4butywi 136 46 an an DT cord-004222-z4butywi 136 47 Illumina Illumina NNP cord-004222-z4butywi 136 48 MiSeq MiSeq NNP cord-004222-z4butywi 136 49 ( ( -LRB- cord-004222-z4butywi 136 50 MiSeq MiSeq NNP cord-004222-z4butywi 136 51 Reagent Reagent NNP cord-004222-z4butywi 136 52 Kit kit NN cord-004222-z4butywi 136 53 v3 v3 NN cord-004222-z4butywi 136 54 , , , cord-004222-z4butywi 136 55 600-cycle 600-cycle CD cord-004222-z4butywi 136 56 ) ) -RRB- cord-004222-z4butywi 136 57 . . . cord-004222-z4butywi 137 1 All all DT cord-004222-z4butywi 137 2 animal animal NN cord-004222-z4butywi 137 3 experiments experiment NNS cord-004222-z4butywi 137 4 were be VBD cord-004222-z4butywi 137 5 conducted conduct VBN cord-004222-z4butywi 137 6 in in IN cord-004222-z4butywi 137 7 accordance accordance NN cord-004222-z4butywi 137 8 with with IN cord-004222-z4butywi 137 9 the the DT cord-004222-z4butywi 137 10 Institutional Institutional NNP cord-004222-z4butywi 137 11 Animal Animal NNP cord-004222-z4butywi 137 12 Care Care NNP cord-004222-z4butywi 137 13 and and CC cord-004222-z4butywi 137 14 Use Use NNP cord-004222-z4butywi 137 15 Committee Committee NNP cord-004222-z4butywi 137 16 of of IN cord-004222-z4butywi 137 17 Scripps Scripps NNP cord-004222-z4butywi 137 18 Research Research NNP cord-004222-z4butywi 137 19 and and CC cord-004222-z4butywi 137 20 approved approve VBN cord-004222-z4butywi 137 21 by by IN cord-004222-z4butywi 137 22 the the DT cord-004222-z4butywi 137 23 Institutional Institutional NNP cord-004222-z4butywi 137 24 Research Research NNP cord-004222-z4butywi 137 25 Boards Boards NNPS cord-004222-z4butywi 137 26 of of IN cord-004222-z4butywi 137 27 Scripps Scripps NNP cord-004222-z4butywi 137 28 Research Research NNP cord-004222-z4butywi 137 29 . . . cord-004222-z4butywi 138 1 ( ( -LRB- cord-004222-z4butywi 138 2 d d LS cord-004222-z4butywi 138 3 ) ) -RRB- cord-004222-z4butywi 138 4 Distribution distribution NN cord-004222-z4butywi 138 5 of of IN cord-004222-z4butywi 138 6 VH VH NNP cord-004222-z4butywi 138 7 gene gene NN cord-004222-z4butywi 138 8 family family NN cord-004222-z4butywi 138 9 usage usage NN cord-004222-z4butywi 138 10 for for IN cord-004222-z4butywi 138 11 unshared unshared JJ cord-004222-z4butywi 138 12 clonotypes clonotype NNS cord-004222-z4butywi 138 13 from from IN cord-004222-z4butywi 138 14 the the DT cord-004222-z4butywi 138 15 animal animal NN cord-004222-z4butywi 138 16 pool pool NN cord-004222-z4butywi 138 17 ( ( -LRB- cord-004222-z4butywi 138 18 black black JJ cord-004222-z4butywi 138 19 ) ) -RRB- cord-004222-z4butywi 138 20 or or CC cord-004222-z4butywi 138 21 clonotypes clonotype NNS cord-004222-z4butywi 138 22 shared share VBN cord-004222-z4butywi 138 23 by by IN cord-004222-z4butywi 138 24 both both DT cord-004222-z4butywi 138 25 species specie NNS cord-004222-z4butywi 138 26 pool pool NN cord-004222-z4butywi 138 27 ( ( -LRB- cord-004222-z4butywi 138 28 red red NN cord-004222-z4butywi 138 29 ) ) -RRB- cord-004222-z4butywi 138 30 . . . cord-004222-z4butywi 139 1 ( ( -LRB- cord-004222-z4butywi 139 2 e e NNP cord-004222-z4butywi 139 3 , , , cord-004222-z4butywi 139 4 f f LS cord-004222-z4butywi 139 5 ) ) -RRB- cord-004222-z4butywi 139 6 Sequence sequence NN cord-004222-z4butywi 139 7 logos logo NNS cord-004222-z4butywi 139 8 of of IN cord-004222-z4butywi 139 9 the the DT cord-004222-z4butywi 139 10 CDRH3s CDRH3s NNP cord-004222-z4butywi 139 11 encoded encode VBN cord-004222-z4butywi 139 12 by by IN cord-004222-z4butywi 139 13 shared shared JJ cord-004222-z4butywi 139 14 and and CC cord-004222-z4butywi 139 15 unshared unshared JJ cord-004222-z4butywi 139 16 clonotypes clonotype NNS cord-004222-z4butywi 139 17 of of IN cord-004222-z4butywi 139 18 length length NN cord-004222-z4butywi 139 19 8 8 CD cord-004222-z4butywi 139 20 ( ( -LRB- cord-004222-z4butywi 139 21 e e NN cord-004222-z4butywi 139 22 ) ) -RRB- cord-004222-z4butywi 139 23 or or CC cord-004222-z4butywi 139 24 13 13 CD cord-004222-z4butywi 139 25 ( ( -LRB- cord-004222-z4butywi 139 26 f f NNP cord-004222-z4butywi 139 27 ) ) -RRB- cord-004222-z4butywi 139 28 . . . cord-004222-z4butywi 140 1 Head head NN cord-004222-z4butywi 140 2 - - HYPH cord-004222-z4butywi 140 3 region region NN cord-004222-z4butywi 140 4 amino amino NN cord-004222-z4butywi 140 5 acid acid NN cord-004222-z4butywi 140 6 coloring coloring NN cord-004222-z4butywi 140 7 : : : cord-004222-z4butywi 140 8 polar polar JJ cord-004222-z4butywi 140 9 amino amino JJ cord-004222-z4butywi 140 10 acids acid NNS cord-004222-z4butywi 140 11 ( ( -LRB- cord-004222-z4butywi 140 12 GSTYCQN GSTYCQN NNP cord-004222-z4butywi 140 13 ) ) -RRB- cord-004222-z4butywi 140 14 are be VBP cord-004222-z4butywi 140 15 green green JJ cord-004222-z4butywi 140 16 ; ; : cord-004222-z4butywi 140 17 basic basic JJ cord-004222-z4butywi 140 18 amino amino NN cord-004222-z4butywi 140 19 acids acid NNS cord-004222-z4butywi 140 20 ( ( -LRB- cord-004222-z4butywi 140 21 KRH KRH NNP cord-004222-z4butywi 140 22 ) ) -RRB- cord-004222-z4butywi 140 23 are be VBP cord-004222-z4butywi 140 24 blue blue JJ cord-004222-z4butywi 140 25 ; ; : cord-004222-z4butywi 140 26 acidic acidic JJ cord-004222-z4butywi 140 27 amino amino NN cord-004222-z4butywi 140 28 acids acid NNS cord-004222-z4butywi 140 29 ( ( -LRB- cord-004222-z4butywi 140 30 DE DE NNP cord-004222-z4butywi 140 31 ) ) -RRB- cord-004222-z4butywi 140 32 are be VBP cord-004222-z4butywi 140 33 red red JJ cord-004222-z4butywi 140 34 ; ; : cord-004222-z4butywi 140 35 and and CC cord-004222-z4butywi 140 36 hydrophobic hydrophobic JJ cord-004222-z4butywi 140 37 amino amino JJ cord-004222-z4butywi 140 38 acids acid NNS cord-004222-z4butywi 140 39 ( ( -LRB- cord-004222-z4butywi 140 40 AVLIPWFM AVLIPWFM NNP cord-004222-z4butywi 140 41 ) ) -RRB- cord-004222-z4butywi 140 42 are be VBP cord-004222-z4butywi 140 43 black black JJ cord-004222-z4butywi 140 44 . . . cord-004222-z4butywi 141 1 All all DT cord-004222-z4butywi 141 2 torso torso JJ cord-004222-z4butywi 141 3 residues residue NNS cord-004222-z4butywi 141 4 are be VBP cord-004222-z4butywi 141 5 gray gray JJ cord-004222-z4butywi 141 6 . . . cord-004222-z4butywi 142 1 Murine murine JJ cord-004222-z4butywi 142 2 antibody antibody NN cord-004222-z4butywi 142 3 responses response NNS cord-004222-z4butywi 142 4 to to IN cord-004222-z4butywi 142 5 cleaved cleave VBD cord-004222-z4butywi 142 6 soluble soluble JJ cord-004222-z4butywi 142 7 HIV-1 HIV-1 NNP cord-004222-z4butywi 142 8 envelope envelope NN cord-004222-z4butywi 142 9 trimers trimer NNS cord-004222-z4butywi 142 10 are be VBP cord-004222-z4butywi 142 11 highly highly RB cord-004222-z4butywi 142 12 restricted restrict VBN cord-004222-z4butywi 142 13 in in IN cord-004222-z4butywi 142 14 specificity specificity NN cord-004222-z4butywi 142 15 Rational rational JJ cord-004222-z4butywi 142 16 HIV HIV NNP cord-004222-z4butywi 142 17 immunogen immunogen NN cord-004222-z4butywi 142 18 design design NN cord-004222-z4butywi 142 19 to to TO cord-004222-z4butywi 142 20 target target VB cord-004222-z4butywi 142 21 specific specific JJ cord-004222-z4butywi 142 22 germline germline NN cord-004222-z4butywi 142 23 B b NN cord-004222-z4butywi 142 24 cell cell NN cord-004222-z4butywi 142 25 receptors receptor NNS cord-004222-z4butywi 142 26 Priming prime VBG cord-004222-z4butywi 142 27 HIV-1 HIV-1 NNP cord-004222-z4butywi 142 28 broadly broadly RB cord-004222-z4butywi 142 29 neutralizing neutralize VBG cord-004222-z4butywi 142 30 antibody antibody NN cord-004222-z4butywi 142 31 precursors precursor NNS cord-004222-z4butywi 142 32 in in IN cord-004222-z4butywi 142 33 human human JJ cord-004222-z4butywi 142 34 ig ig JJ cord-004222-z4butywi 142 35 loci locus NNS cord-004222-z4butywi 142 36 transgenic transgenic JJ cord-004222-z4butywi 142 37 mice mouse NNS cord-004222-z4butywi 143 1 Bacterially bacterially RB cord-004222-z4butywi 143 2 derived derive VBN cord-004222-z4butywi 143 3 synthetic synthetic JJ cord-004222-z4butywi 143 4 mimetics mimetic NNS cord-004222-z4butywi 143 5 of of IN cord-004222-z4butywi 143 6 mammalian mammalian JJ cord-004222-z4butywi 143 7 oligomannose oligomannose NNP cord-004222-z4butywi 143 8 prime prime JJ cord-004222-z4butywi 143 9 antibody antibody NN cord-004222-z4butywi 143 10 responses response NNS cord-004222-z4butywi 143 11 that that WDT cord-004222-z4butywi 143 12 neutralize neutralize VBP cord-004222-z4butywi 143 13 HIV HIV NNP cord-004222-z4butywi 143 14 infectivity infectivity NN cord-004222-z4butywi 143 15 A a DT cord-004222-z4butywi 143 16 repertoire repertoire NN cord-004222-z4butywi 143 17 of of IN cord-004222-z4butywi 143 18 monoclonal monoclonal JJ cord-004222-z4butywi 143 19 antibodies antibody NNS cord-004222-z4butywi 143 20 with with IN cord-004222-z4butywi 143 21 human human JJ cord-004222-z4butywi 143 22 heavy heavy JJ cord-004222-z4butywi 143 23 chains chain NNS cord-004222-z4butywi 143 24 from from IN cord-004222-z4butywi 143 25 transgenic transgenic JJ cord-004222-z4butywi 143 26 mice mouse NNS cord-004222-z4butywi 143 27 Antigen antigen NN cord-004222-z4butywi 143 28 - - HYPH cord-004222-z4butywi 143 29 specific specific JJ cord-004222-z4butywi 143 30 human human JJ cord-004222-z4butywi 143 31 monoclonal monoclonal JJ cord-004222-z4butywi 143 32 antibodies antibody NNS cord-004222-z4butywi 143 33 from from IN cord-004222-z4butywi 143 34 mice mouse NNS cord-004222-z4butywi 143 35 engineered engineer VBN cord-004222-z4butywi 143 36 with with IN cord-004222-z4butywi 143 37 human human JJ cord-004222-z4butywi 143 38 ig ig NN cord-004222-z4butywi 143 39 heavy heavy NN cord-004222-z4butywi 143 40 and and CC cord-004222-z4butywi 143 41 light light JJ cord-004222-z4butywi 143 42 chain chain NN cord-004222-z4butywi 143 43 YACs yac NNS cord-004222-z4butywi 143 44 Antigen antigen NN cord-004222-z4butywi 143 45 - - HYPH cord-004222-z4butywi 143 46 specific specific JJ cord-004222-z4butywi 143 47 human human JJ cord-004222-z4butywi 143 48 antibodies antibody NNS cord-004222-z4butywi 143 49 from from IN cord-004222-z4butywi 143 50 mice mouse NNS cord-004222-z4butywi 143 51 comprising comprise VBG cord-004222-z4butywi 143 52 four four CD cord-004222-z4butywi 143 53 distinct distinct JJ cord-004222-z4butywi 143 54 genetic genetic JJ cord-004222-z4butywi 143 55 modifications modification NNS cord-004222-z4butywi 143 56 Human human JJ cord-004222-z4butywi 143 57 antibody antibody NN cord-004222-z4butywi 143 58 production production NN cord-004222-z4butywi 143 59 in in IN cord-004222-z4butywi 143 60 transgenic transgenic JJ cord-004222-z4butywi 143 61 animals animal NNS cord-004222-z4butywi 143 62 Transgenic transgenic JJ cord-004222-z4butywi 143 63 mouse mouse NN cord-004222-z4butywi 143 64 strains strain NNS cord-004222-z4butywi 143 65 as as IN cord-004222-z4butywi 143 66 platforms platform NNS cord-004222-z4butywi 143 67 for for IN cord-004222-z4butywi 143 68 the the DT cord-004222-z4butywi 143 69 successful successful JJ cord-004222-z4butywi 143 70 discovery discovery NN cord-004222-z4butywi 143 71 and and CC cord-004222-z4butywi 143 72 development development NN cord-004222-z4butywi 143 73 of of IN cord-004222-z4butywi 143 74 human human JJ cord-004222-z4butywi 143 75 therapeutic therapeutic JJ cord-004222-z4butywi 143 76 monoclonal monoclonal JJ cord-004222-z4butywi 143 77 antibodies antibody NNS cord-004222-z4butywi 143 78 Mechanisms Mechanisms NNPS cord-004222-z4butywi 143 79 of of IN cord-004222-z4butywi 143 80 central central JJ cord-004222-z4butywi 143 81 tolerance tolerance NN cord-004222-z4butywi 143 82 for for IN cord-004222-z4butywi 143 83 B b NN cord-004222-z4butywi 143 84 cells cell NNS cord-004222-z4butywi 143 85 High high JJ cord-004222-z4butywi 143 86 - - HYPH cord-004222-z4butywi 143 87 affinity affinity NN cord-004222-z4butywi 143 88 IgG igg NN cord-004222-z4butywi 143 89 antibodies antibody NNS cord-004222-z4butywi 143 90 develop develop VBP cord-004222-z4butywi 143 91 naturally naturally RB cord-004222-z4butywi 143 92 in in IN cord-004222-z4butywi 143 93 ig ig JJ cord-004222-z4butywi 143 94 - - HYPH cord-004222-z4butywi 143 95 knockout knockout NN cord-004222-z4butywi 143 96 rats rat NNS cord-004222-z4butywi 143 97 carrying carry VBG cord-004222-z4butywi 143 98 germline germline JJ cord-004222-z4butywi 143 99 human human JJ cord-004222-z4butywi 143 100 IgH igh NN cord-004222-z4butywi 143 101 / / , cord-004222-z4butywi 143 102 Igκ Igκ NNP cord-004222-z4butywi 143 103 / / SYM cord-004222-z4butywi 143 104 Igλ Igλ NNP cord-004222-z4butywi 143 105 loci locus NNS cord-004222-z4butywi 143 106 bearing bear VBG cord-004222-z4butywi 143 107 the the DT cord-004222-z4butywi 143 108 rat rat NN cord-004222-z4butywi 143 109 CH CH NNP cord-004222-z4butywi 143 110 region region NN cord-004222-z4butywi 143 111 Human human JJ cord-004222-z4butywi 143 112 antibody antibody NN cord-004222-z4butywi 143 113 expression expression NN cord-004222-z4butywi 143 114 in in IN cord-004222-z4butywi 143 115 transgenic transgenic JJ cord-004222-z4butywi 143 116 rats rat NNS cord-004222-z4butywi 143 117 : : : cord-004222-z4butywi 144 1 comparison comparison NN cord-004222-z4butywi 144 2 of of IN cord-004222-z4butywi 144 3 chimeric chimeric JJ cord-004222-z4butywi 144 4 IgH igh NN cord-004222-z4butywi 144 5 loci locus NNS cord-004222-z4butywi 144 6 with with IN cord-004222-z4butywi 144 7 human human JJ cord-004222-z4butywi 144 8 VH VH NNP cord-004222-z4butywi 144 9 , , , cord-004222-z4butywi 144 10 D D NNP cord-004222-z4butywi 144 11 and and CC cord-004222-z4butywi 144 12 JH JH NNP cord-004222-z4butywi 144 13 but but CC cord-004222-z4butywi 144 14 bearing bear VBG cord-004222-z4butywi 144 15 different different JJ cord-004222-z4butywi 144 16 rat rat NN cord-004222-z4butywi 144 17 c c NN cord-004222-z4butywi 144 18 - - HYPH cord-004222-z4butywi 144 19 gene gene NN cord-004222-z4butywi 144 20 regions region NNS cord-004222-z4butywi 144 21 Commonality Commonality NNP cord-004222-z4butywi 144 22 despite despite IN cord-004222-z4butywi 144 23 exceptional exceptional JJ cord-004222-z4butywi 144 24 diversity diversity NN cord-004222-z4butywi 144 25 in in IN cord-004222-z4butywi 144 26 the the DT cord-004222-z4butywi 144 27 baseline baseline JJ cord-004222-z4butywi 144 28 human human JJ cord-004222-z4butywi 144 29 antibody antibody NN cord-004222-z4butywi 144 30 repertoire repertoire NN cord-004222-z4butywi 144 31 Clonify Clonify NNP cord-004222-z4butywi 144 32 : : : cord-004222-z4butywi 144 33 unseeded unseeded JJ cord-004222-z4butywi 144 34 antibody antibody NN cord-004222-z4butywi 144 35 lineage lineage NN cord-004222-z4butywi 144 36 assignment assignment NN cord-004222-z4butywi 144 37 from from IN cord-004222-z4butywi 144 38 next next JJ cord-004222-z4butywi 144 39 - - HYPH cord-004222-z4butywi 144 40 generation generation NN cord-004222-z4butywi 144 41 sequencing sequencing NN cord-004222-z4butywi 144 42 data datum NNS cord-004222-z4butywi 144 43 Genetic genetic JJ cord-004222-z4butywi 144 44 measurement measurement NN cord-004222-z4butywi 144 45 of of IN cord-004222-z4butywi 144 46 memory memory NN cord-004222-z4butywi 144 47 b b NN cord-004222-z4butywi 144 48 - - HYPH cord-004222-z4butywi 144 49 cell cell NN cord-004222-z4butywi 144 50 recall recall NN cord-004222-z4butywi 144 51 using use VBG cord-004222-z4butywi 144 52 antibody antibody NN cord-004222-z4butywi 144 53 repertoire repertoire NN cord-004222-z4butywi 144 54 sequencing sequencing NN cord-004222-z4butywi 144 55 Toward toward IN cord-004222-z4butywi 144 56 a a DT cord-004222-z4butywi 144 57 more more RBR cord-004222-z4butywi 144 58 accurate accurate JJ cord-004222-z4butywi 144 59 view view NN cord-004222-z4butywi 144 60 of of IN cord-004222-z4butywi 144 61 human human JJ cord-004222-z4butywi 144 62 b b NN cord-004222-z4butywi 144 63 - - HYPH cord-004222-z4butywi 144 64 cell cell NN cord-004222-z4butywi 144 65 repertoire repertoire NN cord-004222-z4butywi 144 66 by by IN cord-004222-z4butywi 144 67 next next JJ cord-004222-z4butywi 144 68 - - HYPH cord-004222-z4butywi 144 69 generation generation NN cord-004222-z4butywi 144 70 sequencing sequencing NN cord-004222-z4butywi 144 71 , , , cord-004222-z4butywi 144 72 unbiased unbiased JJ cord-004222-z4butywi 144 73 repertoire repertoire NN cord-004222-z4butywi 144 74 capture capture NN cord-004222-z4butywi 144 75 and and CC cord-004222-z4butywi 144 76 single single JJ cord-004222-z4butywi 144 77 - - HYPH cord-004222-z4butywi 144 78 molecule molecule NN cord-004222-z4butywi 144 79 barcoding barcoding NN cord-004222-z4butywi 144 80 Massively massively RB cord-004222-z4butywi 144 81 scalable scalable JJ cord-004222-z4butywi 144 82 genetic genetic JJ cord-004222-z4butywi 144 83 analysis analysis NN cord-004222-z4butywi 144 84 of of IN cord-004222-z4butywi 144 85 antibody antibody NN cord-004222-z4butywi 144 86 repertoires repertoire NNS cord-004222-z4butywi 144 87 Rapid Rapid NNP cord-004222-z4butywi 144 88 and and CC cord-004222-z4butywi 144 89 focused focus VBD cord-004222-z4butywi 144 90 maturation maturation NN cord-004222-z4butywi 144 91 of of IN cord-004222-z4butywi 144 92 a a DT cord-004222-z4butywi 144 93 VRC01-Class VRC01-Class NNP cord-004222-z4butywi 144 94 HIV HIV NNP cord-004222-z4butywi 144 95 broadly broadly RB cord-004222-z4butywi 144 96 neutralizing neutralize VBG cord-004222-z4butywi 144 97 antibody antibody NN cord-004222-z4butywi 144 98 lineage lineage NN cord-004222-z4butywi 144 99 involves involve VBZ cord-004222-z4butywi 144 100 both both CC cord-004222-z4butywi 144 101 binding binding NN cord-004222-z4butywi 144 102 and and CC cord-004222-z4butywi 144 103 accommodation accommodation NN cord-004222-z4butywi 144 104 of of IN cord-004222-z4butywi 144 105 the the DT cord-004222-z4butywi 144 106 N276-Glycan N276-Glycan NNP cord-004222-z4butywi 144 107 HIV-1 HIV-1 NNP cord-004222-z4butywi 144 108 VACCINES vaccine NNS cord-004222-z4butywi 144 109 . . . cord-004222-z4butywi 145 1 priming prime VBG cord-004222-z4butywi 145 2 a a DT cord-004222-z4butywi 145 3 broadly broadly RB cord-004222-z4butywi 145 4 neutralizing neutralize VBG cord-004222-z4butywi 145 5 antibody antibody NN cord-004222-z4butywi 145 6 response response NN cord-004222-z4butywi 145 7 to to IN cord-004222-z4butywi 145 8 HIV-1 HIV-1 NNP cord-004222-z4butywi 145 9 using use VBG cord-004222-z4butywi 145 10 a a DT cord-004222-z4butywi 145 11 germline germline NN cord-004222-z4butywi 145 12 targeting target VBG cord-004222-z4butywi 145 13 immunogen immunogen NN cord-004222-z4butywi 145 14 Identification identification NN cord-004222-z4butywi 145 15 of of IN cord-004222-z4butywi 145 16 common common JJ cord-004222-z4butywi 145 17 features feature NNS cord-004222-z4butywi 145 18 in in IN cord-004222-z4butywi 145 19 prototype prototype NN cord-004222-z4butywi 145 20 broadly broadly RB cord-004222-z4butywi 145 21 neutralizing neutralize VBG cord-004222-z4butywi 145 22 antibodies antibody NNS cord-004222-z4butywi 145 23 to to IN cord-004222-z4butywi 145 24 HIV HIV NNP cord-004222-z4butywi 145 25 envelope envelope NN cord-004222-z4butywi 145 26 V2 V2 NNP cord-004222-z4butywi 145 27 apex apex NN cord-004222-z4butywi 145 28 to to TO cord-004222-z4butywi 145 29 facilitate facilitate VB cord-004222-z4butywi 145 30 vaccine vaccine NN cord-004222-z4butywi 145 31 design design NN cord-004222-z4butywi 145 32 High high JJ cord-004222-z4butywi 145 33 - - HYPH cord-004222-z4butywi 145 34 throughput throughput NN cord-004222-z4butywi 145 35 immune immune JJ cord-004222-z4butywi 145 36 repertoire repertoire NN cord-004222-z4butywi 145 37 analysis analysis NN cord-004222-z4butywi 145 38 with with IN cord-004222-z4butywi 145 39 IGoR IGoR NNP cord-004222-z4butywi 145 40 Estimating estimate VBG cord-004222-z4butywi 145 41 the the DT cord-004222-z4butywi 145 42 population population NN cord-004222-z4butywi 145 43 size size NN cord-004222-z4butywi 145 44 for for IN cord-004222-z4butywi 145 45 capture capture NN cord-004222-z4butywi 145 46 - - HYPH cord-004222-z4butywi 145 47 recapture recapture NN cord-004222-z4butywi 145 48 data datum NNS cord-004222-z4butywi 145 49 with with IN cord-004222-z4butywi 145 50 unequal unequal JJ cord-004222-z4butywi 145 51 catchability catchability NN cord-004222-z4butywi 145 52 How how WRB cord-004222-z4butywi 145 53 many many JJ cord-004222-z4butywi 145 54 different different JJ cord-004222-z4butywi 145 55 clonotypes clonotype NNS cord-004222-z4butywi 145 56 do do VBP cord-004222-z4butywi 145 57 immune immune JJ cord-004222-z4butywi 145 58 repertoires repertoire NNS cord-004222-z4butywi 145 59 contain contain VBP cord-004222-z4butywi 145 60 ? ? . cord-004222-z4butywi 146 1 Robust robust JJ cord-004222-z4butywi 146 2 estimates estimate NNS cord-004222-z4butywi 146 3 of of IN cord-004222-z4butywi 146 4 overall overall JJ cord-004222-z4butywi 146 5 immune immune JJ cord-004222-z4butywi 146 6 - - HYPH cord-004222-z4butywi 146 7 repertoire repertoire NN cord-004222-z4butywi 146 8 diversity diversity NN cord-004222-z4butywi 146 9 from from IN cord-004222-z4butywi 146 10 high high JJ cord-004222-z4butywi 146 11 - - HYPH cord-004222-z4butywi 146 12 throughput throughput NN cord-004222-z4butywi 146 13 measurements measurement NNS cord-004222-z4butywi 146 14 on on IN cord-004222-z4butywi 146 15 samples sample NNS cord-004222-z4butywi 146 16 Complete complete JJ cord-004222-z4butywi 146 17 humanization humanization NN cord-004222-z4butywi 146 18 of of IN cord-004222-z4butywi 146 19 the the DT cord-004222-z4butywi 146 20 mouse mouse NN cord-004222-z4butywi 146 21 immunoglobulin immunoglobulin NN cord-004222-z4butywi 146 22 loci locus NNS cord-004222-z4butywi 146 23 enables enable VBZ cord-004222-z4butywi 146 24 efficient efficient JJ cord-004222-z4butywi 146 25 therapeutic therapeutic JJ cord-004222-z4butywi 146 26 antibody antibody NN cord-004222-z4butywi 146 27 discovery discovery NN cord-004222-z4butywi 146 28 Mechanisms Mechanisms NNPS cord-004222-z4butywi 146 29 that that WDT cord-004222-z4butywi 146 30 shape shape VBP cord-004222-z4butywi 146 31 human human JJ cord-004222-z4butywi 146 32 antibody antibody NN cord-004222-z4butywi 146 33 repertoire repertoire NN cord-004222-z4butywi 146 34 development development NN cord-004222-z4butywi 146 35 in in IN cord-004222-z4butywi 146 36 mice mouse NNS cord-004222-z4butywi 146 37 transgenic transgenic JJ cord-004222-z4butywi 146 38 for for IN cord-004222-z4butywi 146 39 human human JJ cord-004222-z4butywi 146 40 ig ig NNP cord-004222-z4butywi 146 41 H H NNP cord-004222-z4butywi 146 42 and and CC cord-004222-z4butywi 146 43 L L NNP cord-004222-z4butywi 146 44 chain chain NN cord-004222-z4butywi 146 45 loci locus NNS cord-004222-z4butywi 146 46 Tissue tissue NN cord-004222-z4butywi 146 47 - - HYPH cord-004222-z4butywi 146 48 specific specific JJ cord-004222-z4butywi 146 49 expressed express VBD cord-004222-z4butywi 146 50 antibody antibody NN cord-004222-z4butywi 146 51 variable variable JJ cord-004222-z4butywi 146 52 gene gene NN cord-004222-z4butywi 146 53 repertoires repertoire NNS cord-004222-z4butywi 147 1 Intrinsic intrinsic JJ cord-004222-z4butywi 147 2 bias bias NN cord-004222-z4butywi 147 3 and and CC cord-004222-z4butywi 147 4 public public JJ cord-004222-z4butywi 147 5 rearrangements rearrangement NNS cord-004222-z4butywi 147 6 in in IN cord-004222-z4butywi 147 7 the the DT cord-004222-z4butywi 147 8 human human JJ cord-004222-z4butywi 147 9 immunoglobulin immunoglobulin NN cord-004222-z4butywi 147 10 Vλ Vλ NNP cord-004222-z4butywi 147 11 light light JJ cord-004222-z4butywi 147 12 chain chain NN cord-004222-z4butywi 147 13 repertoire repertoire NN cord-004222-z4butywi 147 14 Immunoglobulin immunoglobulin NN cord-004222-z4butywi 147 15 light light JJ cord-004222-z4butywi 147 16 chain chain NN cord-004222-z4butywi 147 17 gene gene NN cord-004222-z4butywi 147 18 rearrangements rearrangement NNS cord-004222-z4butywi 147 19 , , , cord-004222-z4butywi 147 20 receptor receptor NN cord-004222-z4butywi 147 21 editing editing NN cord-004222-z4butywi 147 22 and and CC cord-004222-z4butywi 147 23 the the DT cord-004222-z4butywi 147 24 development development NN cord-004222-z4butywi 147 25 of of IN cord-004222-z4butywi 147 26 a a DT cord-004222-z4butywi 147 27 Self Self NNP cord-004222-z4butywi 147 28 - - HYPH cord-004222-z4butywi 147 29 Tolerant tolerant JJ cord-004222-z4butywi 147 30 antibody antibody NN cord-004222-z4butywi 147 31 repertoire repertoire NN cord-004222-z4butywi 148 1 Microbial microbial JJ cord-004222-z4butywi 148 2 symbionts symbiont NNS cord-004222-z4butywi 148 3 regulate regulate VBP cord-004222-z4butywi 148 4 the the DT cord-004222-z4butywi 148 5 primary primary JJ cord-004222-z4butywi 148 6 ig ig NN cord-004222-z4butywi 148 7 repertoire repertoire NN cord-004222-z4butywi 148 8 B B NNP cord-004222-z4butywi 148 9 cell cell NN cord-004222-z4butywi 148 10 superantigens superantigen NNS cord-004222-z4butywi 148 11 in in IN cord-004222-z4butywi 148 12 the the DT cord-004222-z4butywi 148 13 human human JJ cord-004222-z4butywi 148 14 intestinal intestinal NN cord-004222-z4butywi 148 15 microbiota microbiota NN cord-004222-z4butywi 148 16 High high JJ cord-004222-z4butywi 148 17 frequency frequency NN cord-004222-z4butywi 148 18 of of IN cord-004222-z4butywi 148 19 shared share VBN cord-004222-z4butywi 148 20 clonotypes clonotype NNS cord-004222-z4butywi 148 21 in in IN cord-004222-z4butywi 148 22 human human JJ cord-004222-z4butywi 148 23 B b NN cord-004222-z4butywi 148 24 cell cell NN cord-004222-z4butywi 148 25 receptor receptor NN cord-004222-z4butywi 148 26 repertoires repertoire NNS cord-004222-z4butywi 149 1 Moderated moderate VBN cord-004222-z4butywi 149 2 estimation estimation NN cord-004222-z4butywi 149 3 of of IN cord-004222-z4butywi 149 4 fold fold JJ cord-004222-z4butywi 149 5 change change NN cord-004222-z4butywi 149 6 and and CC cord-004222-z4butywi 149 7 dispersion dispersion NN cord-004222-z4butywi 149 8 for for IN cord-004222-z4butywi 149 9 RNA RNA NNP cord-004222-z4butywi 149 10 - - HYPH cord-004222-z4butywi 149 11 seq seq NN cord-004222-z4butywi 149 12 data datum NNS cord-004222-z4butywi 149 13 with with IN cord-004222-z4butywi 149 14 DESeq DESeq NNP cord-004222-z4butywi 149 15 . . . cord-004222-z4butywi 150 1 2 2 LS cord-004222-z4butywi 151 1 The the DT cord-004222-z4butywi 151 2 authors author NNS cord-004222-z4butywi 151 3 thank thank VBP cord-004222-z4butywi 151 4 all all PDT cord-004222-z4butywi 151 5 the the DT cord-004222-z4butywi 151 6 study study NN cord-004222-z4butywi 151 7 subjects subject NNS cord-004222-z4butywi 151 8 for for IN cord-004222-z4butywi 151 9 their -PRON- PRP$ cord-004222-z4butywi 151 10 participation participation NN cord-004222-z4butywi 151 11 . . . cord-004222-z4butywi 151 12 _SP cord-004222-z4butywi 152 1 C.J. C.J. NNP cord-004222-z4butywi 152 2 , , , cord-004222-z4butywi 152 3 D.R.B. D.R.B. NNP cord-004222-z4butywi 152 4 and and CC cord-004222-z4butywi 152 5 B.B. B.B. NNP cord-004222-z4butywi 152 6 planned plan VBD cord-004222-z4butywi 152 7 and and CC cord-004222-z4butywi 152 8 designed design VBD cord-004222-z4butywi 152 9 the the DT cord-004222-z4butywi 152 10 experiments experiment NNS cord-004222-z4butywi 152 11 . . . cord-004222-z4butywi 153 1 C.J. C.J. NNP cord-004222-z4butywi 153 2 performed perform VBD cord-004222-z4butywi 153 3 experiments experiment NNS cord-004222-z4butywi 153 4 . . . cord-004222-z4butywi 154 1 C.J. C.J. NNP cord-004222-z4butywi 154 2 analyzed analyze VBD cord-004222-z4butywi 154 3 data datum NNS cord-004222-z4butywi 154 4 . . . cord-004222-z4butywi 155 1 C.J. C.J. NNP cord-004222-z4butywi 155 2 wrote write VBD cord-004222-z4butywi 155 3 the the DT cord-004222-z4butywi 155 4 manuscript manuscript NN cord-004222-z4butywi 155 5 . . . cord-004222-z4butywi 156 1 All all DT cord-004222-z4butywi 156 2 authors author NNS cord-004222-z4butywi 156 3 contributed contribute VBD cord-004222-z4butywi 156 4 to to IN cord-004222-z4butywi 156 5 manuscript manuscript NN cord-004222-z4butywi 156 6 revisions revision NNS cord-004222-z4butywi 156 7 . . . cord-004222-z4butywi 157 1 The the DT cord-004222-z4butywi 157 2 authors author NNS cord-004222-z4butywi 157 3 declare declare VBP cord-004222-z4butywi 157 4 no no DT cord-004222-z4butywi 157 5 competing compete VBG cord-004222-z4butywi 157 6 interests interest NNS cord-004222-z4butywi 157 7 . . . cord-004222-z4butywi 158 1 Supplementary supplementary JJ cord-004222-z4butywi 158 2 information information NN cord-004222-z4butywi 158 3 is be VBZ cord-004222-z4butywi 158 4 available available JJ cord-004222-z4butywi 158 5 for for IN cord-004222-z4butywi 158 6 this this DT cord-004222-z4butywi 158 7 paper paper NN cord-004222-z4butywi 158 8 at at IN cord-004222-z4butywi 158 9 https://doi.org/10.1038/s41598-020-57764-7.Correspondence https://doi.org/10.1038/s41598-020-57764-7.correspondence NN cord-004222-z4butywi 158 10 and and CC cord-004222-z4butywi 158 11 requests request NNS cord-004222-z4butywi 158 12 for for IN cord-004222-z4butywi 158 13 materials material NNS cord-004222-z4butywi 158 14 should should MD cord-004222-z4butywi 158 15 be be VB cord-004222-z4butywi 158 16 addressed address VBN cord-004222-z4butywi 158 17 to to IN cord-004222-z4butywi 159 1 D.R.B. D.R.B. NNP cord-004222-z4butywi 159 2 or or CC cord-004222-z4butywi 159 3 B.B.Publisher B.B.Publisher NNP cord-004222-z4butywi 159 4 's 's POS cord-004222-z4butywi 159 5 note note NN cord-004222-z4butywi 159 6 Springer Springer NNP cord-004222-z4butywi 159 7 Nature Nature NNP cord-004222-z4butywi 159 8 remains remain VBZ cord-004222-z4butywi 159 9 neutral neutral JJ cord-004222-z4butywi 159 10 with with IN cord-004222-z4butywi 159 11 regard regard NN cord-004222-z4butywi 159 12 to to IN cord-004222-z4butywi 159 13 jurisdictional jurisdictional JJ cord-004222-z4butywi 159 14 claims claim NNS cord-004222-z4butywi 159 15 in in IN cord-004222-z4butywi 159 16 published publish VBN cord-004222-z4butywi 159 17 maps map NNS cord-004222-z4butywi 159 18 and and CC cord-004222-z4butywi 159 19 institutional institutional JJ cord-004222-z4butywi 159 20 affiliations affiliation NNS cord-004222-z4butywi 159 21 . . . cord-004222-z4butywi 160 1 Open open VB cord-004222-z4butywi 160 2 Access Access NNP cord-004222-z4butywi 161 1 This this DT cord-004222-z4butywi 161 2 article article NN cord-004222-z4butywi 161 3 is be VBZ cord-004222-z4butywi 161 4 licensed license VBN cord-004222-z4butywi 161 5 under under IN cord-004222-z4butywi 161 6 a a DT cord-004222-z4butywi 161 7 Creative Creative NNP cord-004222-z4butywi 161 8 Commons Commons NNP cord-004222-z4butywi 161 9 Attribution Attribution NNP cord-004222-z4butywi 161 10 4.0 4.0 CD cord-004222-z4butywi 161 11 International International NNP cord-004222-z4butywi 161 12 License License NNP cord-004222-z4butywi 161 13 , , , cord-004222-z4butywi 161 14 which which WDT cord-004222-z4butywi 161 15 permits permit VBZ cord-004222-z4butywi 161 16 use use NN cord-004222-z4butywi 161 17 , , , cord-004222-z4butywi 161 18 sharing sharing NN cord-004222-z4butywi 161 19 , , , cord-004222-z4butywi 161 20 adaptation adaptation NN cord-004222-z4butywi 161 21 , , , cord-004222-z4butywi 161 22 distribution distribution NN cord-004222-z4butywi 161 23 and and CC cord-004222-z4butywi 161 24 reproduction reproduction NN cord-004222-z4butywi 161 25 in in IN cord-004222-z4butywi 161 26 any any DT cord-004222-z4butywi 161 27 medium medium NN cord-004222-z4butywi 161 28 or or CC cord-004222-z4butywi 161 29 format format NN cord-004222-z4butywi 161 30 , , , cord-004222-z4butywi 161 31 as as RB cord-004222-z4butywi 161 32 long long RB cord-004222-z4butywi 161 33 as as IN cord-004222-z4butywi 161 34 you -PRON- PRP cord-004222-z4butywi 161 35 give give VBP cord-004222-z4butywi 161 36 appropriate appropriate JJ cord-004222-z4butywi 161 37 credit credit NN cord-004222-z4butywi 161 38 to to IN cord-004222-z4butywi 161 39 the the DT cord-004222-z4butywi 161 40 original original JJ cord-004222-z4butywi 161 41 author(s author(s NNP cord-004222-z4butywi 161 42 ) ) -RRB- cord-004222-z4butywi 161 43 and and CC cord-004222-z4butywi 161 44 the the DT cord-004222-z4butywi 161 45 source source NN cord-004222-z4butywi 161 46 , , , cord-004222-z4butywi 161 47 provide provide VB cord-004222-z4butywi 161 48 a a DT cord-004222-z4butywi 161 49 link link NN cord-004222-z4butywi 161 50 to to IN cord-004222-z4butywi 161 51 the the DT cord-004222-z4butywi 161 52 Creative Creative NNP cord-004222-z4butywi 161 53 Commons Commons NNP cord-004222-z4butywi 161 54 license license NN cord-004222-z4butywi 161 55 , , , cord-004222-z4butywi 161 56 and and CC cord-004222-z4butywi 161 57 indicate indicate VBP cord-004222-z4butywi 161 58 if if IN cord-004222-z4butywi 161 59 changes change NNS cord-004222-z4butywi 161 60 were be VBD cord-004222-z4butywi 161 61 made make VBN cord-004222-z4butywi 161 62 . . . cord-004222-z4butywi 162 1 The the DT cord-004222-z4butywi 162 2 images image NNS cord-004222-z4butywi 162 3 or or CC cord-004222-z4butywi 162 4 other other JJ cord-004222-z4butywi 162 5 third third JJ cord-004222-z4butywi 162 6 party party NN cord-004222-z4butywi 162 7 material material NN cord-004222-z4butywi 162 8 in in IN cord-004222-z4butywi 162 9 this this DT cord-004222-z4butywi 162 10 article article NN cord-004222-z4butywi 162 11 are be VBP cord-004222-z4butywi 162 12 included include VBN cord-004222-z4butywi 162 13 in in IN cord-004222-z4butywi 162 14 the the DT cord-004222-z4butywi 162 15 article article NN cord-004222-z4butywi 162 16 's 's POS cord-004222-z4butywi 162 17 Creative Creative NNP cord-004222-z4butywi 162 18 Commons Commons NNP cord-004222-z4butywi 162 19 license license NN cord-004222-z4butywi 162 20 , , , cord-004222-z4butywi 162 21 unless unless IN cord-004222-z4butywi 162 22 indicated indicate VBN cord-004222-z4butywi 162 23 otherwise otherwise RB cord-004222-z4butywi 162 24 in in IN cord-004222-z4butywi 162 25 a a DT cord-004222-z4butywi 162 26 credit credit NN cord-004222-z4butywi 162 27 line line NN cord-004222-z4butywi 162 28 to to IN cord-004222-z4butywi 162 29 the the DT cord-004222-z4butywi 162 30 material material NN cord-004222-z4butywi 162 31 . . . cord-004222-z4butywi 163 1 If if IN cord-004222-z4butywi 163 2 material material NN cord-004222-z4butywi 163 3 is be VBZ cord-004222-z4butywi 163 4 not not RB cord-004222-z4butywi 163 5 included include VBN cord-004222-z4butywi 163 6 in in IN cord-004222-z4butywi 163 7 the the DT cord-004222-z4butywi 163 8 article article NN cord-004222-z4butywi 163 9 's 's POS cord-004222-z4butywi 163 10 Creative Creative NNP cord-004222-z4butywi 163 11 Commons Commons NNP cord-004222-z4butywi 163 12 license license NN cord-004222-z4butywi 163 13 and and CC cord-004222-z4butywi 163 14 your -PRON- PRP$ cord-004222-z4butywi 163 15 intended intend VBN cord-004222-z4butywi 163 16 use use NN cord-004222-z4butywi 163 17 is be VBZ cord-004222-z4butywi 163 18 not not RB cord-004222-z4butywi 163 19 permitted permit VBN cord-004222-z4butywi 163 20 by by IN cord-004222-z4butywi 163 21 statutory statutory JJ cord-004222-z4butywi 163 22 regulation regulation NN cord-004222-z4butywi 163 23 or or CC cord-004222-z4butywi 163 24 exceeds exceed VBZ cord-004222-z4butywi 163 25 the the DT cord-004222-z4butywi 163 26 permitted permit VBN cord-004222-z4butywi 163 27 use use NN cord-004222-z4butywi 163 28 , , , cord-004222-z4butywi 163 29 you -PRON- PRP cord-004222-z4butywi 163 30 will will MD cord-004222-z4butywi 163 31 need need VB cord-004222-z4butywi 163 32 to to TO cord-004222-z4butywi 163 33 obtain obtain VB cord-004222-z4butywi 163 34 permission permission NN cord-004222-z4butywi 163 35 directly directly RB cord-004222-z4butywi 163 36 from from IN cord-004222-z4butywi 163 37 the the DT cord-004222-z4butywi 163 38 copyright copyright NN cord-004222-z4butywi 163 39 holder holder NN cord-004222-z4butywi 163 40 . . . cord-004222-z4butywi 164 1 To to TO cord-004222-z4butywi 164 2 view view VB cord-004222-z4butywi 164 3 a a DT cord-004222-z4butywi 164 4 copy copy NN cord-004222-z4butywi 164 5 of of IN cord-004222-z4butywi 164 6 this this DT cord-004222-z4butywi 164 7 license license NN cord-004222-z4butywi 164 8 , , , cord-004222-z4butywi 164 9 visit visit VB cord-004222-z4butywi 164 10 http://creativecommons.org/licenses/by/4.0/. http://creativecommons.org/licenses/by/4.0/. NNP