id sid tid token lemma pos cord-001734-bbeznd3r 1 1 key key JJ cord-001734-bbeznd3r 2 1 : : : cord-001734-bbeznd3r 2 2 cord-001734-bbeznd3r cord-001734-bbeznd3r PRP cord-001734-bbeznd3r 2 3 authors author NNS cord-001734-bbeznd3r 2 4 : : : cord-001734-bbeznd3r 2 5 Gupta Gupta NNP cord-001734-bbeznd3r 2 6 , , , cord-001734-bbeznd3r 2 7 Garvita Garvita NNP cord-001734-bbeznd3r 2 8 ; ; : cord-001734-bbeznd3r 2 9 Lim Lim NNP cord-001734-bbeznd3r 2 10 , , , cord-001734-bbeznd3r 2 11 Liangzhong Liangzhong NNP cord-001734-bbeznd3r 2 12 ; ; : cord-001734-bbeznd3r 2 13 Song Song NNP cord-001734-bbeznd3r 2 14 , , , cord-001734-bbeznd3r 2 15 Jianxing Jianxing NNP cord-001734-bbeznd3r 2 16 title title NN cord-001734-bbeznd3r 2 17 : : : cord-001734-bbeznd3r 2 18 NMR NMR NNP cord-001734-bbeznd3r 2 19 and and CC cord-001734-bbeznd3r 2 20 MD MD NNP cord-001734-bbeznd3r 2 21 Studies Studies NNPS cord-001734-bbeznd3r 2 22 Reveal reveal VBP cord-001734-bbeznd3r 2 23 That that IN cord-001734-bbeznd3r 2 24 the the DT cord-001734-bbeznd3r 2 25 Isolated isolated JJ cord-001734-bbeznd3r 2 26 Dengue Dengue NNP cord-001734-bbeznd3r 2 27 NS3 NS3 NNP cord-001734-bbeznd3r 2 28 Protease protease NN cord-001734-bbeznd3r 2 29 Is be VBZ cord-001734-bbeznd3r 2 30 an an DT cord-001734-bbeznd3r 2 31 Intrinsically intrinsically RB cord-001734-bbeznd3r 2 32 Disordered disordered JJ cord-001734-bbeznd3r 2 33 Chymotrypsin Chymotrypsin NNP cord-001734-bbeznd3r 2 34 Fold Fold NNP cord-001734-bbeznd3r 2 35 Which which WDT cord-001734-bbeznd3r 3 1 Absolutely absolutely RB cord-001734-bbeznd3r 3 2 Requests request VBZ cord-001734-bbeznd3r 3 3 NS2B NS2B NNP cord-001734-bbeznd3r 3 4 for for IN cord-001734-bbeznd3r 3 5 Correct Correct NNP cord-001734-bbeznd3r 3 6 Folding Folding NNP cord-001734-bbeznd3r 3 7 and and CC cord-001734-bbeznd3r 3 8 Functional Functional NNP cord-001734-bbeznd3r 3 9 Dynamics Dynamics NNPS cord-001734-bbeznd3r 3 10 date date NN cord-001734-bbeznd3r 3 11 : : : cord-001734-bbeznd3r 3 12 2015 2015 CD cord-001734-bbeznd3r 3 13 - - HYPH cord-001734-bbeznd3r 3 14 08 08 CD cord-001734-bbeznd3r 3 15 - - SYM cord-001734-bbeznd3r 3 16 10 10 CD cord-001734-bbeznd3r 3 17 journal journal NN cord-001734-bbeznd3r 3 18 : : : cord-001734-bbeznd3r 4 1 PLoS PLoS NNP cord-001734-bbeznd3r 4 2 One one CD cord-001734-bbeznd3r 4 3 DOI DOI NNP cord-001734-bbeznd3r 4 4 : : : cord-001734-bbeznd3r 4 5 10.1371 10.1371 CD cord-001734-bbeznd3r 4 6 / / SYM cord-001734-bbeznd3r 4 7 journal.pone.0134823 journal.pone.0134823 NNP cord-001734-bbeznd3r 4 8 sha sha NNP cord-001734-bbeznd3r 4 9 : : : cord-001734-bbeznd3r 4 10 5229d13f7a121dfc9a455d2ec0807e3966da3e19 5229d13f7a121dfc9a455d2ec0807e3966da3e19 CD cord-001734-bbeznd3r 4 11 doc_id doc_id CD cord-001734-bbeznd3r 4 12 : : : cord-001734-bbeznd3r 4 13 1734 1734 CD cord-001734-bbeznd3r 4 14 cord_uid cord_uid NNS cord-001734-bbeznd3r 4 15 : : : cord-001734-bbeznd3r 5 1 bbeznd3r bbeznd3r NNP cord-001734-bbeznd3r 6 1 Dengue dengue NN cord-001734-bbeznd3r 6 2 genome genome NN cord-001734-bbeznd3r 6 3 encodes encode VBZ cord-001734-bbeznd3r 6 4 a a DT cord-001734-bbeznd3r 6 5 two two CD cord-001734-bbeznd3r 6 6 component component NN cord-001734-bbeznd3r 6 7 protease protease NN cord-001734-bbeznd3r 6 8 complex complex NN cord-001734-bbeznd3r 6 9 ( ( -LRB- cord-001734-bbeznd3r 6 10 NS2B NS2B NNP cord-001734-bbeznd3r 6 11 - - HYPH cord-001734-bbeznd3r 6 12 NS3pro NS3pro NNP cord-001734-bbeznd3r 6 13 ) ) -RRB- cord-001734-bbeznd3r 6 14 essential essential JJ cord-001734-bbeznd3r 6 15 for for IN cord-001734-bbeznd3r 6 16 the the DT cord-001734-bbeznd3r 6 17 viral viral JJ cord-001734-bbeznd3r 6 18 maturation maturation NN cord-001734-bbeznd3r 6 19 / / SYM cord-001734-bbeznd3r 6 20 infectivity infectivity NN cord-001734-bbeznd3r 6 21 , , , cord-001734-bbeznd3r 6 22 thus thus RB cord-001734-bbeznd3r 6 23 representing represent VBG cord-001734-bbeznd3r 6 24 a a DT cord-001734-bbeznd3r 6 25 key key JJ cord-001734-bbeznd3r 6 26 drug drug NN cord-001734-bbeznd3r 6 27 target target NN cord-001734-bbeznd3r 6 28 . . . cord-001734-bbeznd3r 7 1 Previously previously RB cord-001734-bbeznd3r 7 2 , , , cord-001734-bbeznd3r 7 3 due due IN cord-001734-bbeznd3r 7 4 to to IN cord-001734-bbeznd3r 7 5 its -PRON- PRP$ cord-001734-bbeznd3r 7 6 “ " `` cord-001734-bbeznd3r 7 7 complete complete JJ cord-001734-bbeznd3r 7 8 insolubility insolubility NN cord-001734-bbeznd3r 7 9 ” " '' cord-001734-bbeznd3r 7 10 , , , cord-001734-bbeznd3r 7 11 the the DT cord-001734-bbeznd3r 7 12 isolated isolated JJ cord-001734-bbeznd3r 7 13 NS3pro ns3pro NN cord-001734-bbeznd3r 7 14 could could MD cord-001734-bbeznd3r 7 15 not not RB cord-001734-bbeznd3r 7 16 be be VB cord-001734-bbeznd3r 7 17 experimentally experimentally RB cord-001734-bbeznd3r 7 18 studied study VBN cord-001734-bbeznd3r 7 19 and and CC cord-001734-bbeznd3r 7 20 it -PRON- PRP cord-001734-bbeznd3r 7 21 remains remain VBZ cord-001734-bbeznd3r 7 22 elusive elusive JJ cord-001734-bbeznd3r 7 23 what what WP cord-001734-bbeznd3r 7 24 structure structure NN cord-001734-bbeznd3r 7 25 it -PRON- PRP cord-001734-bbeznd3r 7 26 adopts adopt VBZ cord-001734-bbeznd3r 7 27 without without IN cord-001734-bbeznd3r 7 28 NS2B NS2B NNP cord-001734-bbeznd3r 7 29 and and CC cord-001734-bbeznd3r 7 30 why why WRB cord-001734-bbeznd3r 7 31 NS2B NS2B NNP cord-001734-bbeznd3r 7 32 is be VBZ cord-001734-bbeznd3r 7 33 indispensable indispensable JJ cord-001734-bbeznd3r 7 34 . . . cord-001734-bbeznd3r 8 1 Here here RB cord-001734-bbeznd3r 8 2 as as IN cord-001734-bbeznd3r 8 3 facilitated facilitate VBN cord-001734-bbeznd3r 8 4 by by IN cord-001734-bbeznd3r 8 5 our -PRON- PRP$ cord-001734-bbeznd3r 8 6 previous previous JJ cord-001734-bbeznd3r 8 7 discovery discovery NN cord-001734-bbeznd3r 8 8 , , , cord-001734-bbeznd3r 8 9 the the DT cord-001734-bbeznd3r 8 10 isolated isolated JJ cord-001734-bbeznd3r 8 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 8 12 has have VBZ cord-001734-bbeznd3r 8 13 been be VBN cord-001734-bbeznd3r 8 14 surprisingly surprisingly RB cord-001734-bbeznd3r 8 15 deciphered decipher VBN cord-001734-bbeznd3r 8 16 by by IN cord-001734-bbeznd3r 8 17 NMR NMR NNP cord-001734-bbeznd3r 8 18 to to TO cord-001734-bbeznd3r 8 19 be be VB cord-001734-bbeznd3r 8 20 the the DT cord-001734-bbeznd3r 8 21 first first JJ cord-001734-bbeznd3r 8 22 intrinsically intrinsically RB cord-001734-bbeznd3r 8 23 - - HYPH cord-001734-bbeznd3r 8 24 disordered disordered JJ cord-001734-bbeznd3r 8 25 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 8 26 - - HYPH cord-001734-bbeznd3r 8 27 like like JJ cord-001734-bbeznd3r 8 28 fold fold NN cord-001734-bbeznd3r 8 29 , , , cord-001734-bbeznd3r 8 30 which which WDT cord-001734-bbeznd3r 8 31 exists exist VBZ cord-001734-bbeznd3r 8 32 in in IN cord-001734-bbeznd3r 8 33 a a DT cord-001734-bbeznd3r 8 34 loosely loosely RB cord-001734-bbeznd3r 8 35 - - HYPH cord-001734-bbeznd3r 8 36 packed pack VBN cord-001734-bbeznd3r 8 37 state state NN cord-001734-bbeznd3r 8 38 with with IN cord-001734-bbeznd3r 8 39 non non JJ cord-001734-bbeznd3r 8 40 - - JJ cord-001734-bbeznd3r 8 41 native native JJ cord-001734-bbeznd3r 8 42 long long JJ cord-001734-bbeznd3r 8 43 - - HYPH cord-001734-bbeznd3r 8 44 range range NN cord-001734-bbeznd3r 8 45 interactions interaction NNS cord-001734-bbeznd3r 8 46 as as IN cord-001734-bbeznd3r 8 47 revealed reveal VBN cord-001734-bbeznd3r 8 48 by by IN cord-001734-bbeznd3r 8 49 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 8 50 relaxation relaxation NN cord-001734-bbeznd3r 8 51 enhancement enhancement NN cord-001734-bbeznd3r 8 52 ( ( -LRB- cord-001734-bbeznd3r 8 53 PRE PRE NNP cord-001734-bbeznd3r 8 54 ) ) -RRB- cord-001734-bbeznd3r 8 55 . . . cord-001734-bbeznd3r 9 1 The the DT cord-001734-bbeznd3r 9 2 disordered disordered JJ cord-001734-bbeznd3r 9 3 NS3pro ns3pro NN cord-001734-bbeznd3r 9 4 appears appear VBZ cord-001734-bbeznd3r 9 5 to to TO cord-001734-bbeznd3r 9 6 be be VB cord-001734-bbeznd3r 9 7 needed need VBN cord-001734-bbeznd3r 9 8 for for IN cord-001734-bbeznd3r 9 9 binding bind VBG cord-001734-bbeznd3r 9 10 a a DT cord-001734-bbeznd3r 9 11 human human JJ cord-001734-bbeznd3r 9 12 host host NN cord-001734-bbeznd3r 9 13 factor factor NN cord-001734-bbeznd3r 9 14 to to TO cord-001734-bbeznd3r 9 15 trigger trigger VB cord-001734-bbeznd3r 9 16 the the DT cord-001734-bbeznd3r 9 17 membrane membrane NN cord-001734-bbeznd3r 9 18 remodeling remodeling NN cord-001734-bbeznd3r 9 19 . . . cord-001734-bbeznd3r 10 1 Moreover moreover RB cord-001734-bbeznd3r 10 2 , , , cord-001734-bbeznd3r 10 3 we -PRON- PRP cord-001734-bbeznd3r 10 4 have have VBP cord-001734-bbeznd3r 10 5 in in IN cord-001734-bbeznd3r 10 6 vitro vitro FW cord-001734-bbeznd3r 10 7 refolded refolde VBD cord-001734-bbeznd3r 10 8 the the DT cord-001734-bbeznd3r 10 9 NS3pro NS3pro NNP cord-001734-bbeznd3r 10 10 in in IN cord-001734-bbeznd3r 10 11 complex complex NN cord-001734-bbeznd3r 10 12 with with IN cord-001734-bbeznd3r 10 13 either either DT cord-001734-bbeznd3r 10 14 NS2B NS2B NNP cord-001734-bbeznd3r 10 15 ( ( -LRB- cord-001734-bbeznd3r 10 16 48–100 48–100 CD cord-001734-bbeznd3r 10 17 ) ) -RRB- cord-001734-bbeznd3r 10 18 or or CC cord-001734-bbeznd3r 10 19 the the DT cord-001734-bbeznd3r 10 20 full full JJ cord-001734-bbeznd3r 10 21 - - HYPH cord-001734-bbeznd3r 10 22 length length NN cord-001734-bbeznd3r 10 23 NS2B NS2B NNP cord-001734-bbeznd3r 10 24 ( ( -LRB- cord-001734-bbeznd3r 10 25 1–130 1–130 CD cord-001734-bbeznd3r 10 26 ) ) -RRB- cord-001734-bbeznd3r 10 27 anchored anchor VBN cord-001734-bbeznd3r 10 28 into into IN cord-001734-bbeznd3r 10 29 the the DT cord-001734-bbeznd3r 10 30 LMPC LMPC NNP cord-001734-bbeznd3r 10 31 micelle micelle NN cord-001734-bbeznd3r 10 32 , , , cord-001734-bbeznd3r 10 33 and and CC cord-001734-bbeznd3r 10 34 the the DT cord-001734-bbeznd3r 10 35 two two CD cord-001734-bbeznd3r 10 36 complexes complex NNS cord-001734-bbeznd3r 10 37 have have VBP cord-001734-bbeznd3r 10 38 similar similar JJ cord-001734-bbeznd3r 10 39 activities activity NNS cord-001734-bbeznd3r 10 40 but but CC cord-001734-bbeznd3r 10 41 different different JJ cord-001734-bbeznd3r 10 42 dynamics dynamic NNS cord-001734-bbeznd3r 10 43 . . . cord-001734-bbeznd3r 11 1 We -PRON- PRP cord-001734-bbeznd3r 11 2 also also RB cord-001734-bbeznd3r 11 3 performed perform VBD cord-001734-bbeznd3r 11 4 molecular molecular JJ cord-001734-bbeznd3r 11 5 dynamics dynamic NNS cord-001734-bbeznd3r 11 6 ( ( -LRB- cord-001734-bbeznd3r 11 7 MD MD NNP cord-001734-bbeznd3r 11 8 ) ) -RRB- cord-001734-bbeznd3r 11 9 simulations simulation NNS cord-001734-bbeznd3r 11 10 and and CC cord-001734-bbeznd3r 11 11 the the DT cord-001734-bbeznd3r 11 12 results result NNS cord-001734-bbeznd3r 11 13 revealed reveal VBD cord-001734-bbeznd3r 11 14 that that IN cord-001734-bbeznd3r 11 15 NS2B NS2B NNP cord-001734-bbeznd3r 11 16 shows show VBZ cord-001734-bbeznd3r 11 17 the the DT cord-001734-bbeznd3r 11 18 highest high JJS cord-001734-bbeznd3r 11 19 structural structural JJ cord-001734-bbeznd3r 11 20 fluctuations fluctuation NNS cord-001734-bbeznd3r 11 21 in in IN cord-001734-bbeznd3r 11 22 the the DT cord-001734-bbeznd3r 11 23 complex complex NN cord-001734-bbeznd3r 11 24 , , , cord-001734-bbeznd3r 11 25 thus thus RB cord-001734-bbeznd3r 11 26 providing provide VBG cord-001734-bbeznd3r 11 27 the the DT cord-001734-bbeznd3r 11 28 dynamic dynamic JJ cord-001734-bbeznd3r 11 29 basis basis NN cord-001734-bbeznd3r 11 30 for for IN cord-001734-bbeznd3r 11 31 the the DT cord-001734-bbeznd3r 11 32 observation observation NN cord-001734-bbeznd3r 11 33 on on IN cord-001734-bbeznd3r 11 34 its -PRON- PRP$ cord-001734-bbeznd3r 11 35 conformational conformational JJ cord-001734-bbeznd3r 11 36 exchange exchange NN cord-001734-bbeznd3r 11 37 between between IN cord-001734-bbeznd3r 11 38 open open JJ cord-001734-bbeznd3r 11 39 and and CC cord-001734-bbeznd3r 11 40 closed closed JJ cord-001734-bbeznd3r 11 41 states state NNS cord-001734-bbeznd3r 11 42 . . . cord-001734-bbeznd3r 12 1 Remarkably remarkably RB cord-001734-bbeznd3r 12 2 , , , cord-001734-bbeznd3r 12 3 the the DT cord-001734-bbeznd3r 12 4 NS2B NS2B NNP cord-001734-bbeznd3r 12 5 cofactor cofactor NN cord-001734-bbeznd3r 12 6 plays play VBZ cord-001734-bbeznd3r 12 7 a a DT cord-001734-bbeznd3r 12 8 central central JJ cord-001734-bbeznd3r 12 9 role role NN cord-001734-bbeznd3r 12 10 in in IN cord-001734-bbeznd3r 12 11 maintaining maintain VBG cord-001734-bbeznd3r 12 12 the the DT cord-001734-bbeznd3r 12 13 correlated correlate VBN cord-001734-bbeznd3r 12 14 motion motion NN cord-001734-bbeznd3r 12 15 network network NN cord-001734-bbeznd3r 12 16 required require VBN cord-001734-bbeznd3r 12 17 for for IN cord-001734-bbeznd3r 12 18 the the DT cord-001734-bbeznd3r 12 19 catalysis catalysis NN cord-001734-bbeznd3r 12 20 as as IN cord-001734-bbeznd3r 12 21 we -PRON- PRP cord-001734-bbeznd3r 12 22 previously previously RB cord-001734-bbeznd3r 12 23 decoded decode VBD cord-001734-bbeznd3r 12 24 for for IN cord-001734-bbeznd3r 12 25 the the DT cord-001734-bbeznd3r 12 26 SARS SARS NNP cord-001734-bbeznd3r 12 27 3CL 3CL NNP cord-001734-bbeznd3r 12 28 protease protease NN cord-001734-bbeznd3r 12 29 . . . cord-001734-bbeznd3r 13 1 Indeed indeed RB cord-001734-bbeznd3r 13 2 , , , cord-001734-bbeznd3r 13 3 a a DT cord-001734-bbeznd3r 13 4 truncated truncated JJ cord-001734-bbeznd3r 13 5 NS2B NS2B NNS cord-001734-bbeznd3r 13 6 ( ( -LRB- cord-001734-bbeznd3r 13 7 48–100;Δ77–84 48–100;δ77–84 CD cord-001734-bbeznd3r 13 8 ) ) -RRB- cord-001734-bbeznd3r 13 9 with with IN cord-001734-bbeznd3r 13 10 the the DT cord-001734-bbeznd3r 13 11 flexible flexible JJ cord-001734-bbeznd3r 13 12 loop loop NN cord-001734-bbeznd3r 13 13 deleted delete VBN cord-001734-bbeznd3r 13 14 is be VBZ cord-001734-bbeznd3r 13 15 able able JJ cord-001734-bbeznd3r 13 16 to to TO cord-001734-bbeznd3r 13 17 trap trap VB cord-001734-bbeznd3r 13 18 the the DT cord-001734-bbeznd3r 13 19 NS2B NS2B NNP cord-001734-bbeznd3r 13 20 - - HYPH cord-001734-bbeznd3r 13 21 NS3pro NS3pro NNP cord-001734-bbeznd3r 13 22 complex complex NN cord-001734-bbeznd3r 13 23 in in IN cord-001734-bbeznd3r 13 24 a a DT cord-001734-bbeznd3r 13 25 highly highly RB cord-001734-bbeznd3r 13 26 dynamic dynamic JJ cord-001734-bbeznd3r 13 27 and and CC cord-001734-bbeznd3r 13 28 catalytically catalytically RB cord-001734-bbeznd3r 13 29 - - HYPH cord-001734-bbeznd3r 13 30 impotent impotent JJ cord-001734-bbeznd3r 13 31 state state NN cord-001734-bbeznd3r 13 32 . . . cord-001734-bbeznd3r 14 1 Taken take VBN cord-001734-bbeznd3r 14 2 together together RB cord-001734-bbeznd3r 14 3 , , , cord-001734-bbeznd3r 14 4 our -PRON- PRP$ cord-001734-bbeznd3r 14 5 study study NN cord-001734-bbeznd3r 14 6 implies imply VBZ cord-001734-bbeznd3r 14 7 potential potential JJ cord-001734-bbeznd3r 14 8 strategies strategy NNS cord-001734-bbeznd3r 14 9 to to TO cord-001734-bbeznd3r 14 10 perturb perturb VB cord-001734-bbeznd3r 14 11 the the DT cord-001734-bbeznd3r 14 12 NS2B NS2B NNP cord-001734-bbeznd3r 14 13 - - HYPH cord-001734-bbeznd3r 14 14 NS3pro ns3pro NN cord-001734-bbeznd3r 14 15 interface interface NN cord-001734-bbeznd3r 14 16 for for IN cord-001734-bbeznd3r 14 17 design design NN cord-001734-bbeznd3r 14 18 of of IN cord-001734-bbeznd3r 14 19 inhibitors inhibitor NNS cord-001734-bbeznd3r 14 20 for for IN cord-001734-bbeznd3r 14 21 treating treat VBG cord-001734-bbeznd3r 14 22 dengue dengue NN cord-001734-bbeznd3r 14 23 infection infection NN cord-001734-bbeznd3r 14 24 . . . cord-001734-bbeznd3r 15 1 Dengue dengue NN cord-001734-bbeznd3r 15 2 is be VBZ cord-001734-bbeznd3r 15 3 the the DT cord-001734-bbeznd3r 15 4 most most RBS cord-001734-bbeznd3r 15 5 prevalent prevalent JJ cord-001734-bbeznd3r 15 6 mosquito mosquito NN cord-001734-bbeznd3r 15 7 - - HYPH cord-001734-bbeznd3r 15 8 borne bear VBN cord-001734-bbeznd3r 15 9 viral viral JJ cord-001734-bbeznd3r 15 10 disease disease NN cord-001734-bbeznd3r 15 11 with with IN cord-001734-bbeznd3r 15 12 over over IN cord-001734-bbeznd3r 15 13 500 500 CD cord-001734-bbeznd3r 15 14 million million CD cord-001734-bbeznd3r 15 15 human human JJ cord-001734-bbeznd3r 15 16 infections infection NNS cord-001734-bbeznd3r 15 17 annually annually RB cord-001734-bbeznd3r 15 18 and and CC cord-001734-bbeznd3r 15 19 2.5 2.5 CD cord-001734-bbeznd3r 15 20 billion billion CD cord-001734-bbeznd3r 15 21 people people NNS cord-001734-bbeznd3r 15 22 at at IN cord-001734-bbeznd3r 15 23 risk risk NN cord-001734-bbeznd3r 15 24 , , , cord-001734-bbeznd3r 15 25 particularly particularly RB cord-001734-bbeznd3r 15 26 in in IN cord-001734-bbeznd3r 15 27 tropical tropical JJ cord-001734-bbeznd3r 15 28 and and CC cord-001734-bbeznd3r 15 29 subtropical subtropical JJ cord-001734-bbeznd3r 15 30 regions region NNS cord-001734-bbeznd3r 15 31 [ [ -LRB- cord-001734-bbeznd3r 15 32 1 1 CD cord-001734-bbeznd3r 15 33 , , , cord-001734-bbeznd3r 15 34 2 2 CD cord-001734-bbeznd3r 15 35 ] ] -RRB- cord-001734-bbeznd3r 15 36 . . . cord-001734-bbeznd3r 16 1 The the DT cord-001734-bbeznd3r 16 2 disease disease NN cord-001734-bbeznd3r 16 3 is be VBZ cord-001734-bbeznd3r 16 4 caused cause VBN cord-001734-bbeznd3r 16 5 by by IN cord-001734-bbeznd3r 16 6 Dengue Dengue NNP cord-001734-bbeznd3r 16 7 virus virus NN cord-001734-bbeznd3r 16 8 ( ( -LRB- cord-001734-bbeznd3r 16 9 DENV DENV NNP cord-001734-bbeznd3r 16 10 ) ) -RRB- cord-001734-bbeznd3r 16 11 belonging belong VBG cord-001734-bbeznd3r 16 12 to to IN cord-001734-bbeznd3r 16 13 the the DT cord-001734-bbeznd3r 16 14 Flaviviridae Flaviviridae NNP cord-001734-bbeznd3r 16 15 family family NN cord-001734-bbeznd3r 16 16 , , , cord-001734-bbeznd3r 16 17 which which WDT cord-001734-bbeznd3r 16 18 also also RB cord-001734-bbeznd3r 16 19 includes include VBZ cord-001734-bbeznd3r 16 20 several several JJ cord-001734-bbeznd3r 16 21 other other JJ cord-001734-bbeznd3r 16 22 human human JJ cord-001734-bbeznd3r 16 23 pathogens pathogen NNS cord-001734-bbeznd3r 16 24 such such JJ cord-001734-bbeznd3r 16 25 as as IN cord-001734-bbeznd3r 16 26 the the DT cord-001734-bbeznd3r 16 27 West West NNP cord-001734-bbeznd3r 16 28 Nile Nile NNP cord-001734-bbeznd3r 16 29 virus virus NN cord-001734-bbeznd3r 16 30 , , , cord-001734-bbeznd3r 16 31 Japanese japanese JJ cord-001734-bbeznd3r 16 32 encephalitis encephalitis RB cord-001734-bbeznd3r 16 33 virus virus NN cord-001734-bbeznd3r 16 34 , , , cord-001734-bbeznd3r 16 35 and and CC cord-001734-bbeznd3r 16 36 yellow yellow JJ cord-001734-bbeznd3r 16 37 fever fever NN cord-001734-bbeznd3r 16 38 virus virus NN cord-001734-bbeznd3r 16 39 [ [ -LRB- cord-001734-bbeznd3r 16 40 1 1 CD cord-001734-bbeznd3r 16 41 ] ] -RRB- cord-001734-bbeznd3r 16 42 [ [ -LRB- cord-001734-bbeznd3r 16 43 2 2 CD cord-001734-bbeznd3r 16 44 ] ] -RRB- cord-001734-bbeznd3r 16 45 [ [ -LRB- cord-001734-bbeznd3r 16 46 3 3 CD cord-001734-bbeznd3r 16 47 ] ] -RRB- cord-001734-bbeznd3r 16 48 [ [ -LRB- cord-001734-bbeznd3r 16 49 4 4 CD cord-001734-bbeznd3r 16 50 ] ] -RRB- cord-001734-bbeznd3r 16 51 . . . cord-001734-bbeznd3r 17 1 So so RB cord-001734-bbeznd3r 17 2 far far RB cord-001734-bbeznd3r 17 3 , , , cord-001734-bbeznd3r 17 4 four four CD cord-001734-bbeznd3r 17 5 antigenically antigenically RB cord-001734-bbeznd3r 17 6 distinct distinct JJ cord-001734-bbeznd3r 17 7 DENV DENV NNP cord-001734-bbeznd3r 17 8 serotypes serotype NNS cord-001734-bbeznd3r 17 9 have have VBP cord-001734-bbeznd3r 17 10 been be VBN cord-001734-bbeznd3r 17 11 identified identify VBN cord-001734-bbeznd3r 17 12 : : : cord-001734-bbeznd3r 17 13 DENV-1 DENV-1 NNS cord-001734-bbeznd3r 17 14 to to IN cord-001734-bbeznd3r 17 15 -4 -4 ADD cord-001734-bbeznd3r 17 16 , , , cord-001734-bbeznd3r 17 17 all all DT cord-001734-bbeznd3r 17 18 of of IN cord-001734-bbeznd3r 17 19 which which WDT cord-001734-bbeznd3r 17 20 cause cause VBP cord-001734-bbeznd3r 17 21 dengue dengue NN cord-001734-bbeznd3r 17 22 fever fever NN cord-001734-bbeznd3r 17 23 , , , cord-001734-bbeznd3r 17 24 dengue dengue NN cord-001734-bbeznd3r 17 25 haemorrhagic haemorrhagic JJ cord-001734-bbeznd3r 17 26 fever fever NN cord-001734-bbeznd3r 17 27 and and CC cord-001734-bbeznd3r 17 28 dengue dengue NN cord-001734-bbeznd3r 17 29 shock shock NN cord-001734-bbeznd3r 17 30 syndrome syndrome NN cord-001734-bbeznd3r 17 31 . . . cord-001734-bbeznd3r 18 1 Despite despite IN cord-001734-bbeznd3r 18 2 intense intense JJ cord-001734-bbeznd3r 18 3 studies study NNS cord-001734-bbeznd3r 18 4 , , , cord-001734-bbeznd3r 18 5 currently currently RB cord-001734-bbeznd3r 18 6 there there EX cord-001734-bbeznd3r 18 7 are be VBP cord-001734-bbeznd3r 18 8 neither neither DT cord-001734-bbeznd3r 18 9 vaccines vaccine NNS cord-001734-bbeznd3r 18 10 nor nor CC cord-001734-bbeznd3r 18 11 other other JJ cord-001734-bbeznd3r 18 12 treatments treatment NNS cord-001734-bbeznd3r 18 13 available available JJ cord-001734-bbeznd3r 18 14 to to TO cord-001734-bbeznd3r 18 15 treat treat VB cord-001734-bbeznd3r 18 16 this this DT cord-001734-bbeznd3r 18 17 disease disease NN cord-001734-bbeznd3r 18 18 [ [ -LRB- cord-001734-bbeznd3r 18 19 5 5 CD cord-001734-bbeznd3r 18 20 , , , cord-001734-bbeznd3r 18 21 6 6 CD cord-001734-bbeznd3r 18 22 ] ] -RRB- cord-001734-bbeznd3r 18 23 . . . cord-001734-bbeznd3r 19 1 The the DT cord-001734-bbeznd3r 19 2 DENV DENV NNP cord-001734-bbeznd3r 19 3 genome genome NN cord-001734-bbeznd3r 19 4 is be VBZ cord-001734-bbeznd3r 19 5 composed compose VBN cord-001734-bbeznd3r 19 6 of of IN cord-001734-bbeznd3r 19 7 an an DT cord-001734-bbeznd3r 19 8 11-kb 11-kb CD cord-001734-bbeznd3r 19 9 single single RB cord-001734-bbeznd3r 19 10 - - HYPH cord-001734-bbeznd3r 19 11 stranded strand VBN cord-001734-bbeznd3r 19 12 positive positive JJ cord-001734-bbeznd3r 19 13 sense sense NN cord-001734-bbeznd3r 19 14 RNA RNA NNP cord-001734-bbeznd3r 19 15 . . . cord-001734-bbeznd3r 20 1 Upon upon IN cord-001734-bbeznd3r 20 2 infection infection NN cord-001734-bbeznd3r 20 3 , , , cord-001734-bbeznd3r 20 4 the the DT cord-001734-bbeznd3r 20 5 RNA RNA NNP cord-001734-bbeznd3r 20 6 genome genome NN cord-001734-bbeznd3r 20 7 is be VBZ cord-001734-bbeznd3r 20 8 translated translate VBN cord-001734-bbeznd3r 20 9 into into IN cord-001734-bbeznd3r 20 10 a a DT cord-001734-bbeznd3r 20 11 large large JJ cord-001734-bbeznd3r 20 12 polyprotein polyprotein NN cord-001734-bbeznd3r 20 13 by by IN cord-001734-bbeznd3r 20 14 the the DT cord-001734-bbeznd3r 20 15 host host NN cord-001734-bbeznd3r 20 16 - - HYPH cord-001734-bbeznd3r 20 17 cell cell NN cord-001734-bbeznd3r 20 18 translation translation NN cord-001734-bbeznd3r 20 19 machinery machinery NN cord-001734-bbeznd3r 20 20 , , , cord-001734-bbeznd3r 20 21 that that WDT cord-001734-bbeznd3r 20 22 is be VBZ cord-001734-bbeznd3r 20 23 subsequently subsequently RB cord-001734-bbeznd3r 20 24 processed process VBN cord-001734-bbeznd3r 20 25 into into IN cord-001734-bbeznd3r 20 26 10 10 CD cord-001734-bbeznd3r 20 27 proteins protein NNS cord-001734-bbeznd3r 20 28 , , , cord-001734-bbeznd3r 20 29 including include VBG cord-001734-bbeznd3r 20 30 three three CD cord-001734-bbeznd3r 20 31 structural structural JJ cord-001734-bbeznd3r 20 32 proteins protein NNS cord-001734-bbeznd3r 20 33 ( ( -LRB- cord-001734-bbeznd3r 20 34 capsid capsid NN cord-001734-bbeznd3r 20 35 , , , cord-001734-bbeznd3r 20 36 membrane membrane NN cord-001734-bbeznd3r 20 37 , , , cord-001734-bbeznd3r 20 38 and and CC cord-001734-bbeznd3r 20 39 envelope envelope NN cord-001734-bbeznd3r 20 40 ) ) -RRB- cord-001734-bbeznd3r 20 41 and and CC cord-001734-bbeznd3r 20 42 seven seven CD cord-001734-bbeznd3r 20 43 nonstructural nonstructural JJ cord-001734-bbeznd3r 20 44 proteins protein NNS cord-001734-bbeznd3r 20 45 ( ( -LRB- cord-001734-bbeznd3r 20 46 NS1 ns1 UH cord-001734-bbeznd3r 20 47 , , , cord-001734-bbeznd3r 20 48 NS2A NS2A NNP cord-001734-bbeznd3r 20 49 / / SYM cord-001734-bbeznd3r 20 50 B B NNP cord-001734-bbeznd3r 20 51 , , , cord-001734-bbeznd3r 20 52 NS3 ns3 RB cord-001734-bbeznd3r 20 53 , , , cord-001734-bbeznd3r 20 54 NS4A NS4A NNP cord-001734-bbeznd3r 20 55 / / SYM cord-001734-bbeznd3r 20 56 B B NNP cord-001734-bbeznd3r 20 57 , , , cord-001734-bbeznd3r 20 58 and and CC cord-001734-bbeznd3r 20 59 NS5 NS5 NNP cord-001734-bbeznd3r 20 60 ) ) -RRB- cord-001734-bbeznd3r 20 61 . . . cord-001734-bbeznd3r 21 1 The the DT cord-001734-bbeznd3r 21 2 structural structural JJ cord-001734-bbeznd3r 21 3 proteins protein NNS cord-001734-bbeznd3r 21 4 form form VBP cord-001734-bbeznd3r 21 5 the the DT cord-001734-bbeznd3r 21 6 viral viral JJ cord-001734-bbeznd3r 21 7 particle particle NN cord-001734-bbeznd3r 21 8 while while IN cord-001734-bbeznd3r 21 9 the the DT cord-001734-bbeznd3r 21 10 nonstructural nonstructural JJ cord-001734-bbeznd3r 21 11 proteins protein NNS cord-001734-bbeznd3r 21 12 participate participate VBP cord-001734-bbeznd3r 21 13 in in IN cord-001734-bbeznd3r 21 14 the the DT cord-001734-bbeznd3r 21 15 replication replication NN cord-001734-bbeznd3r 21 16 of of IN cord-001734-bbeznd3r 21 17 the the DT cord-001734-bbeznd3r 21 18 RNA RNA NNP cord-001734-bbeznd3r 21 19 genome genome NN cord-001734-bbeznd3r 21 20 , , , cord-001734-bbeznd3r 21 21 virion virion NN cord-001734-bbeznd3r 21 22 assembly assembly NN cord-001734-bbeznd3r 21 23 , , , cord-001734-bbeznd3r 21 24 and and CC cord-001734-bbeznd3r 21 25 attenuation attenuation NN cord-001734-bbeznd3r 21 26 of of IN cord-001734-bbeznd3r 21 27 the the DT cord-001734-bbeznd3r 21 28 host host NN cord-001734-bbeznd3r 21 29 antiviral antiviral JJ cord-001734-bbeznd3r 21 30 response response NN cord-001734-bbeznd3r 21 31 . . . cord-001734-bbeznd3r 22 1 The the DT cord-001734-bbeznd3r 22 2 cleavage cleavage NN cord-001734-bbeznd3r 22 3 of of IN cord-001734-bbeznd3r 22 4 the the DT cord-001734-bbeznd3r 22 5 polyprotein polyprotein NN cord-001734-bbeznd3r 22 6 is be VBZ cord-001734-bbeznd3r 22 7 carried carry VBN cord-001734-bbeznd3r 22 8 out out RP cord-001734-bbeznd3r 22 9 by by IN cord-001734-bbeznd3r 22 10 host host NN cord-001734-bbeznd3r 22 11 cell cell NN cord-001734-bbeznd3r 22 12 proteases protease NNS cord-001734-bbeznd3r 22 13 including include VBG cord-001734-bbeznd3r 22 14 furin furin NN cord-001734-bbeznd3r 22 15 and and CC cord-001734-bbeznd3r 22 16 signalaseas signalaseas NNP cord-001734-bbeznd3r 22 17 , , , cord-001734-bbeznd3r 22 18 as as RB cord-001734-bbeznd3r 22 19 well well RB cord-001734-bbeznd3r 22 20 as as IN cord-001734-bbeznd3r 22 21 a a DT cord-001734-bbeznd3r 22 22 virus virus NN cord-001734-bbeznd3r 22 23 - - HYPH cord-001734-bbeznd3r 22 24 encoded encode VBN cord-001734-bbeznd3r 22 25 serine serine NN cord-001734-bbeznd3r 22 26 protease protease NN cord-001734-bbeznd3r 22 27 NS2B NS2B NNP cord-001734-bbeznd3r 22 28 - - HYPH cord-001734-bbeznd3r 22 29 NS3pro NS3pro NNP cord-001734-bbeznd3r 22 30 , , , cord-001734-bbeznd3r 22 31 which which WDT cord-001734-bbeznd3r 22 32 has have VBZ cord-001734-bbeznd3r 22 33 been be VBN cord-001734-bbeznd3r 22 34 established establish VBN cord-001734-bbeznd3r 22 35 as as IN cord-001734-bbeznd3r 22 36 a a DT cord-001734-bbeznd3r 22 37 valuable valuable JJ cord-001734-bbeznd3r 22 38 target target NN cord-001734-bbeznd3r 22 39 of of IN cord-001734-bbeznd3r 22 40 therapeutic therapeutic JJ cord-001734-bbeznd3r 22 41 interest interest NN cord-001734-bbeznd3r 22 42 [ [ -LRB- cord-001734-bbeznd3r 22 43 5 5 CD cord-001734-bbeznd3r 22 44 , , , cord-001734-bbeznd3r 22 45 6 6 CD cord-001734-bbeznd3r 22 46 ] ] -RRB- cord-001734-bbeznd3r 22 47 . . . cord-001734-bbeznd3r 23 1 The the DT cord-001734-bbeznd3r 23 2 protease protease NN cord-001734-bbeznd3r 23 3 domain domain NN cord-001734-bbeznd3r 24 1 NS3pro NS3pro NNP cord-001734-bbeznd3r 24 2 consisting consist VBG cord-001734-bbeznd3r 24 3 of of IN cord-001734-bbeznd3r 24 4 the the DT cord-001734-bbeznd3r 24 5 N n CD cord-001734-bbeznd3r 24 6 - - HYPH cord-001734-bbeznd3r 24 7 terminal terminal JJ cord-001734-bbeznd3r 24 8 part part NN cord-001734-bbeznd3r 24 9 of of IN cord-001734-bbeznd3r 24 10 NS3 ns3 RB cord-001734-bbeznd3r 24 11 adopts adopt VBZ cord-001734-bbeznd3r 24 12 a a DT cord-001734-bbeznd3r 24 13 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 24 14 - - HYPH cord-001734-bbeznd3r 24 15 like like JJ cord-001734-bbeznd3r 24 16 fold fold VB cord-001734-bbeznd3r 24 17 with with IN cord-001734-bbeznd3r 24 18 two two CD cord-001734-bbeznd3r 24 19 β β NN cord-001734-bbeznd3r 24 20 - - HYPH cord-001734-bbeznd3r 24 21 barrels barrel NNS cord-001734-bbeznd3r 24 22 , , , cord-001734-bbeznd3r 24 23 each each DT cord-001734-bbeznd3r 24 24 composed compose VBN cord-001734-bbeznd3r 24 25 of of IN cord-001734-bbeznd3r 24 26 six six CD cord-001734-bbeznd3r 24 27 β β NN cord-001734-bbeznd3r 24 28 - - HYPH cord-001734-bbeznd3r 24 29 strands strand NNS cord-001734-bbeznd3r 24 30 , , , cord-001734-bbeznd3r 24 31 with with IN cord-001734-bbeznd3r 24 32 the the DT cord-001734-bbeznd3r 24 33 catalytic catalytic JJ cord-001734-bbeznd3r 24 34 triad triad NN cord-001734-bbeznd3r 24 35 ( ( -LRB- cord-001734-bbeznd3r 24 36 His51-Asp75-Ser135 His51-Asp75-Ser135 NNP cord-001734-bbeznd3r 24 37 ) ) -RRB- cord-001734-bbeznd3r 24 38 located locate VBN cord-001734-bbeznd3r 24 39 at at IN cord-001734-bbeznd3r 24 40 the the DT cord-001734-bbeznd3r 24 41 cleft cleft NN cord-001734-bbeznd3r 24 42 between between IN cord-001734-bbeznd3r 24 43 the the DT cord-001734-bbeznd3r 24 44 two two CD cord-001734-bbeznd3r 24 45 β β NN cord-001734-bbeznd3r 24 46 - - HYPH cord-001734-bbeznd3r 24 47 barrels barrel NNS cord-001734-bbeznd3r 24 48 [ [ -LRB- cord-001734-bbeznd3r 24 49 7 7 CD cord-001734-bbeznd3r 24 50 , , , cord-001734-bbeznd3r 24 51 8 8 CD cord-001734-bbeznd3r 24 52 ] ] -RRB- cord-001734-bbeznd3r 24 53 . . . cord-001734-bbeznd3r 25 1 Amazingly amazingly RB cord-001734-bbeznd3r 25 2 , , , cord-001734-bbeznd3r 25 3 unlike unlike IN cord-001734-bbeznd3r 25 4 other other JJ cord-001734-bbeznd3r 25 5 proteases protease NNS cord-001734-bbeznd3r 25 6 with with IN cord-001734-bbeznd3r 25 7 a a DT cord-001734-bbeznd3r 25 8 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 25 9 - - HYPH cord-001734-bbeznd3r 25 10 like like JJ cord-001734-bbeznd3r 25 11 fold fold NN cord-001734-bbeznd3r 25 12 , , , cord-001734-bbeznd3r 25 13 the the DT cord-001734-bbeznd3r 25 14 flavivirus flavivirus JJ cord-001734-bbeznd3r 25 15 proteases protease NNS cord-001734-bbeznd3r 25 16 including include VBG cord-001734-bbeznd3r 25 17 dengue dengue NN cord-001734-bbeznd3r 25 18 protease protease NN cord-001734-bbeznd3r 25 19 , , , cord-001734-bbeznd3r 25 20 requires require VBZ cord-001734-bbeznd3r 25 21 a a DT cord-001734-bbeznd3r 25 22 stretch stretch NN cord-001734-bbeznd3r 25 23 of of IN cord-001734-bbeznd3r 25 24 approximately approximately RB cord-001734-bbeznd3r 25 25 40 40 CD cord-001734-bbeznd3r 25 26 amino amino NN cord-001734-bbeznd3r 25 27 acids acid NNS cord-001734-bbeznd3r 25 28 from from IN cord-001734-bbeznd3r 25 29 the the DT cord-001734-bbeznd3r 25 30 cytosolic cytosolic JJ cord-001734-bbeznd3r 25 31 domain domain NN cord-001734-bbeznd3r 25 32 of of IN cord-001734-bbeznd3r 25 33 NS2B NS2B NNP cord-001734-bbeznd3r 25 34 for for IN cord-001734-bbeznd3r 25 35 catalytic catalytic JJ cord-001734-bbeznd3r 25 36 activity activity NN cord-001734-bbeznd3r 25 37 , , , cord-001734-bbeznd3r 25 38 thus thus RB cord-001734-bbeznd3r 25 39 called call VBN cord-001734-bbeznd3r 25 40 two two CD cord-001734-bbeznd3r 25 41 - - HYPH cord-001734-bbeznd3r 25 42 component component NN cord-001734-bbeznd3r 25 43 protease protease NN cord-001734-bbeznd3r 25 44 [ [ -LRB- cord-001734-bbeznd3r 25 45 6 6 CD cord-001734-bbeznd3r 25 46 ] ] -RRB- cord-001734-bbeznd3r 25 47 [ [ -LRB- cord-001734-bbeznd3r 25 48 7 7 CD cord-001734-bbeznd3r 25 49 ] ] -RRB- cord-001734-bbeznd3r 25 50 [ [ -LRB- cord-001734-bbeznd3r 25 51 8 8 CD cord-001734-bbeznd3r 25 52 ] ] -RRB- cord-001734-bbeznd3r 25 53 . . . cord-001734-bbeznd3r 26 1 Intriguingly intriguingly RB cord-001734-bbeznd3r 26 2 , , , cord-001734-bbeznd3r 26 3 while while IN cord-001734-bbeznd3r 26 4 the the DT cord-001734-bbeznd3r 26 5 protease protease NN cord-001734-bbeznd3r 26 6 domains domain NNS cord-001734-bbeznd3r 26 7 adopt adopt VBP cord-001734-bbeznd3r 26 8 highly highly RB cord-001734-bbeznd3r 26 9 similar similar JJ cord-001734-bbeznd3r 26 10 structures structure NNS cord-001734-bbeznd3r 26 11 in in IN cord-001734-bbeznd3r 26 12 all all DT cord-001734-bbeznd3r 26 13 crystal crystal NN cord-001734-bbeznd3r 26 14 structures structure NNS cord-001734-bbeznd3r 26 15 determined determine VBN cord-001734-bbeznd3r 26 16 to to IN cord-001734-bbeznd3r 26 17 date date NN cord-001734-bbeznd3r 26 18 , , , cord-001734-bbeznd3r 26 19 the the DT cord-001734-bbeznd3r 26 20 NS2B NS2B NNP cord-001734-bbeznd3r 26 21 cofactors cofactor NNS cord-001734-bbeznd3r 26 22 have have VBP cord-001734-bbeznd3r 26 23 been be VBN cord-001734-bbeznd3r 26 24 found find VBN cord-001734-bbeznd3r 26 25 to to TO cord-001734-bbeznd3r 26 26 assume assume VB cord-001734-bbeznd3r 26 27 two two CD cord-001734-bbeznd3r 26 28 distinctive distinctive JJ cord-001734-bbeznd3r 26 29 structures structure NNS cord-001734-bbeznd3r 26 30 , , , cord-001734-bbeznd3r 26 31 namely namely RB cord-001734-bbeznd3r 26 32 open open JJ cord-001734-bbeznd3r 26 33 ( ( -LRB- cord-001734-bbeznd3r 26 34 inactive inactive JJ cord-001734-bbeznd3r 26 35 ) ) -RRB- cord-001734-bbeznd3r 26 36 and and CC cord-001734-bbeznd3r 26 37 closed close VBN cord-001734-bbeznd3r 26 38 ( ( -LRB- cord-001734-bbeznd3r 26 39 active active JJ cord-001734-bbeznd3r 26 40 ) ) -RRB- cord-001734-bbeznd3r 26 41 conformations conformation NNS cord-001734-bbeznd3r 26 42 by by IN cord-001734-bbeznd3r 26 43 X x NN cord-001734-bbeznd3r 26 44 - - NN cord-001734-bbeznd3r 26 45 ray ray JJ cord-001734-bbeznd3r 26 46 crystallography crystallography NN cord-001734-bbeznd3r 26 47 and and CC cord-001734-bbeznd3r 26 48 NMR NMR NNP cord-001734-bbeznd3r 26 49 spectroscopy spectroscopy NN cord-001734-bbeznd3r 26 50 [ [ -LRB- cord-001734-bbeznd3r 26 51 7 7 CD cord-001734-bbeznd3r 26 52 ] ] -RRB- cord-001734-bbeznd3r 26 53 [ [ -LRB- cord-001734-bbeznd3r 26 54 8 8 CD cord-001734-bbeznd3r 26 55 ] ] -RRB- cord-001734-bbeznd3r 26 56 [ [ -LRB- cord-001734-bbeznd3r 26 57 9 9 CD cord-001734-bbeznd3r 26 58 ] ] -RRB- cord-001734-bbeznd3r 26 59 [ [ -LRB- cord-001734-bbeznd3r 26 60 10 10 CD cord-001734-bbeznd3r 26 61 ] ] -RRB- cord-001734-bbeznd3r 26 62 [ [ -LRB- cord-001734-bbeznd3r 26 63 11 11 CD cord-001734-bbeznd3r 26 64 ] ] -RRB- cord-001734-bbeznd3r 26 65 [ [ -LRB- cord-001734-bbeznd3r 26 66 12 12 CD cord-001734-bbeznd3r 26 67 ] ] -RRB- cord-001734-bbeznd3r 26 68 . . . cord-001734-bbeznd3r 27 1 To to TO cord-001734-bbeznd3r 27 2 understand understand VB cord-001734-bbeznd3r 27 3 why why WRB cord-001734-bbeznd3r 27 4 the the DT cord-001734-bbeznd3r 27 5 NS2B NS2B NNP cord-001734-bbeznd3r 27 6 cofactor cofactor NN cord-001734-bbeznd3r 27 7 is be VBZ cord-001734-bbeznd3r 27 8 indispensable indispensable JJ cord-001734-bbeznd3r 27 9 for for IN cord-001734-bbeznd3r 27 10 activating activate VBG cord-001734-bbeznd3r 27 11 the the DT cord-001734-bbeznd3r 27 12 dengue dengue NN cord-001734-bbeznd3r 27 13 NS3 ns3 RB cord-001734-bbeznd3r 27 14 protease protease NN cord-001734-bbeznd3r 28 1 is be VBZ cord-001734-bbeznd3r 28 2 not not RB cord-001734-bbeznd3r 28 3 only only RB cord-001734-bbeznd3r 28 4 of of IN cord-001734-bbeznd3r 28 5 fundamental fundamental JJ cord-001734-bbeznd3r 28 6 interest interest NN cord-001734-bbeznd3r 28 7 for for IN cord-001734-bbeznd3r 28 8 enzymology enzymology NN cord-001734-bbeznd3r 28 9 , , , cord-001734-bbeznd3r 28 10 but but CC cord-001734-bbeznd3r 28 11 also also RB cord-001734-bbeznd3r 28 12 bears bear VBZ cord-001734-bbeznd3r 28 13 considerable considerable JJ cord-001734-bbeznd3r 28 14 implications implication NNS cord-001734-bbeznd3r 28 15 for for IN cord-001734-bbeznd3r 28 16 design design NN cord-001734-bbeznd3r 28 17 of of IN cord-001734-bbeznd3r 28 18 molecules molecule NNS cord-001734-bbeznd3r 28 19 with with IN cord-001734-bbeznd3r 28 20 high high JJ cord-001734-bbeznd3r 28 21 affinity affinity NN cord-001734-bbeznd3r 28 22 and and CC cord-001734-bbeznd3r 28 23 specificity specificity NN cord-001734-bbeznd3r 28 24 to to TO cord-001734-bbeznd3r 28 25 inhibit inhibit VB cord-001734-bbeznd3r 28 26 the the DT cord-001734-bbeznd3r 28 27 protease protease NN cord-001734-bbeznd3r 28 28 [ [ -LRB- cord-001734-bbeznd3r 28 29 13 13 CD cord-001734-bbeznd3r 28 30 , , , cord-001734-bbeznd3r 28 31 14 14 CD cord-001734-bbeznd3r 28 32 ] ] -RRB- cord-001734-bbeznd3r 28 33 . . . cord-001734-bbeznd3r 29 1 However however RB cord-001734-bbeznd3r 29 2 , , , cord-001734-bbeznd3r 29 3 due due IN cord-001734-bbeznd3r 29 4 to to IN cord-001734-bbeznd3r 29 5 its -PRON- PRP$ cord-001734-bbeznd3r 29 6 " " `` cord-001734-bbeznd3r 29 7 complete complete JJ cord-001734-bbeznd3r 29 8 insolubility insolubility NN cord-001734-bbeznd3r 29 9 " " '' cord-001734-bbeznd3r 29 10 , , , cord-001734-bbeznd3r 29 11 it -PRON- PRP cord-001734-bbeznd3r 29 12 has have VBZ cord-001734-bbeznd3r 29 13 been be VBN cord-001734-bbeznd3r 29 14 previously previously RB cord-001734-bbeznd3r 29 15 impossible impossible JJ cord-001734-bbeznd3r 29 16 to to TO cord-001734-bbeznd3r 29 17 carry carry VB cord-001734-bbeznd3r 29 18 out out RP cord-001734-bbeznd3r 29 19 any any DT cord-001734-bbeznd3r 29 20 experimental experimental JJ cord-001734-bbeznd3r 29 21 studies study NNS cord-001734-bbeznd3r 29 22 on on IN cord-001734-bbeznd3r 29 23 the the DT cord-001734-bbeznd3r 29 24 isolated isolated JJ cord-001734-bbeznd3r 29 25 NS3pro ns3pro NN cord-001734-bbeznd3r 29 26 domain domain NN cord-001734-bbeznd3r 29 27 . . . cord-001734-bbeznd3r 30 1 In in IN cord-001734-bbeznd3r 30 2 2005 2005 CD cord-001734-bbeznd3r 30 3 , , , cord-001734-bbeznd3r 30 4 we -PRON- PRP cord-001734-bbeznd3r 30 5 discovered discover VBD cord-001734-bbeznd3r 30 6 that that IN cord-001734-bbeznd3r 30 7 previously previously RB cord-001734-bbeznd3r 30 8 - - HYPH cord-001734-bbeznd3r 30 9 thought think VBN cord-001734-bbeznd3r 30 10 " " `` cord-001734-bbeznd3r 30 11 insoluble insoluble JJ cord-001734-bbeznd3r 30 12 proteins protein NNS cord-001734-bbeznd3r 30 13 " " '' cord-001734-bbeznd3r 30 14 in in IN cord-001734-bbeznd3r 30 15 fact fact NN cord-001734-bbeznd3r 30 16 could could MD cord-001734-bbeznd3r 30 17 be be VB cord-001734-bbeznd3r 30 18 solubilized solubilize VBN cord-001734-bbeznd3r 30 19 in in IN cord-001734-bbeznd3r 30 20 water water NN cord-001734-bbeznd3r 30 21 with with IN cord-001734-bbeznd3r 30 22 minimized minimize VBN cord-001734-bbeznd3r 30 23 salt salt NN cord-001734-bbeznd3r 30 24 ions ion NNS cord-001734-bbeznd3r 30 25 [ [ -LRB- cord-001734-bbeznd3r 30 26 15 15 CD cord-001734-bbeznd3r 30 27 ] ] -RRB- cord-001734-bbeznd3r 30 28 [ [ -LRB- cord-001734-bbeznd3r 30 29 16 16 CD cord-001734-bbeznd3r 30 30 ] ] -RRB- cord-001734-bbeznd3r 30 31 [ [ -LRB- cord-001734-bbeznd3r 30 32 17 17 CD cord-001734-bbeznd3r 30 33 ] ] -RRB- cord-001734-bbeznd3r 30 34 [ [ -LRB- cord-001734-bbeznd3r 30 35 18 18 CD cord-001734-bbeznd3r 30 36 ] ] -RRB- cord-001734-bbeznd3r 30 37 , , , cord-001734-bbeznd3r 30 38 and and CC cord-001734-bbeznd3r 30 39 therefore therefore RB cord-001734-bbeznd3r 30 40 we -PRON- PRP cord-001734-bbeznd3r 30 41 have have VBP cord-001734-bbeznd3r 30 42 used use VBN cord-001734-bbeznd3r 30 43 this this DT cord-001734-bbeznd3r 30 44 to to TO cord-001734-bbeznd3r 30 45 study study VB cord-001734-bbeznd3r 30 46 various various JJ cord-001734-bbeznd3r 30 47 previously previously RB cord-001734-bbeznd3r 30 48 - - HYPH cord-001734-bbeznd3r 30 49 thought think VBN cord-001734-bbeznd3r 30 50 insoluble insoluble JJ cord-001734-bbeznd3r 30 51 proteins protein NNS cord-001734-bbeznd3r 30 52 including include VBG cord-001734-bbeznd3r 30 53 TDP-43 TDP-43 NNP cord-001734-bbeznd3r 30 54 N N NNP cord-001734-bbeznd3r 30 55 - - HYPH cord-001734-bbeznd3r 30 56 terminus terminus NN cord-001734-bbeznd3r 30 57 [ [ -LRB- cord-001734-bbeznd3r 30 58 19 19 CD cord-001734-bbeznd3r 30 59 ] ] -RRB- cord-001734-bbeznd3r 30 60 . . . cord-001734-bbeznd3r 31 1 Here here RB cord-001734-bbeznd3r 31 2 with with IN cord-001734-bbeznd3r 31 3 this this DT cord-001734-bbeznd3r 31 4 approach approach NN cord-001734-bbeznd3r 31 5 , , , cord-001734-bbeznd3r 31 6 we -PRON- PRP cord-001734-bbeznd3r 31 7 have have VBP cord-001734-bbeznd3r 31 8 successfully successfully RB cord-001734-bbeznd3r 31 9 characterized characterize VBN cord-001734-bbeznd3r 31 10 the the DT cord-001734-bbeznd3r 31 11 solution solution NN cord-001734-bbeznd3r 31 12 conformations conformation NNS cord-001734-bbeznd3r 31 13 and and CC cord-001734-bbeznd3r 31 14 dynamics dynamic NNS cord-001734-bbeznd3r 31 15 of of IN cord-001734-bbeznd3r 31 16 the the DT cord-001734-bbeznd3r 31 17 isolated isolate VBN cord-001734-bbeznd3r 31 18 protease protease NN cord-001734-bbeznd3r 31 19 domain domain NN cord-001734-bbeznd3r 31 20 by by IN cord-001734-bbeznd3r 31 21 CD CD NNP cord-001734-bbeznd3r 31 22 , , , cord-001734-bbeznd3r 31 23 NMR NMR NNP cord-001734-bbeznd3r 31 24 and and CC cord-001734-bbeznd3r 31 25 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 31 26 relaxation relaxation NN cord-001734-bbeznd3r 31 27 enhancement enhancement NN cord-001734-bbeznd3r 31 28 ( ( -LRB- cord-001734-bbeznd3r 31 29 PRE PRE NNP cord-001734-bbeznd3r 31 30 ) ) -RRB- cord-001734-bbeznd3r 31 31 . . . cord-001734-bbeznd3r 32 1 The the DT cord-001734-bbeznd3r 32 2 results result NNS cord-001734-bbeznd3r 32 3 reveal reveal VBP cord-001734-bbeznd3r 32 4 that that IN cord-001734-bbeznd3r 32 5 surprisingly surprisingly RB cord-001734-bbeznd3r 32 6 the the DT cord-001734-bbeznd3r 32 7 isolated isolated JJ cord-001734-bbeznd3r 32 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 32 9 domain domain NN cord-001734-bbeznd3r 32 10 with with IN cord-001734-bbeznd3r 32 11 the the DT cord-001734-bbeznd3r 32 12 native native JJ cord-001734-bbeznd3r 32 13 sequence sequence NN cord-001734-bbeznd3r 32 14 is be VBZ cord-001734-bbeznd3r 32 15 intrinsically intrinsically RB cord-001734-bbeznd3r 32 16 disordered disordered JJ cord-001734-bbeznd3r 32 17 without without IN cord-001734-bbeznd3r 32 18 any any DT cord-001734-bbeznd3r 32 19 stable stable JJ cord-001734-bbeznd3r 32 20 secondary secondary JJ cord-001734-bbeznd3r 32 21 and and CC cord-001734-bbeznd3r 32 22 tertiary tertiary JJ cord-001734-bbeznd3r 32 23 structures structure NNS cord-001734-bbeznd3r 32 24 , , , cord-001734-bbeznd3r 32 25 as as RB cord-001734-bbeznd3r 32 26 well well RB cord-001734-bbeznd3r 32 27 as as IN cord-001734-bbeznd3r 32 28 has have VBZ cord-001734-bbeznd3r 32 29 no no DT cord-001734-bbeznd3r 32 30 detectable detectable JJ cord-001734-bbeznd3r 32 31 activity activity NN cord-001734-bbeznd3r 32 32 . . . cord-001734-bbeznd3r 33 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 33 2 , , , cord-001734-bbeznd3r 33 3 upon upon IN cord-001734-bbeznd3r 33 4 meeting meet VBG cord-001734-bbeznd3r 33 5 the the DT cord-001734-bbeznd3r 33 6 NS2B NS2B NNP cord-001734-bbeznd3r 33 7 cofactor cofactor NN cord-001734-bbeznd3r 33 8 , , , cord-001734-bbeznd3r 33 9 the the DT cord-001734-bbeznd3r 33 10 disordered disordered JJ cord-001734-bbeznd3r 33 11 NS3pro ns3pro NN cord-001734-bbeznd3r 33 12 spontaneously spontaneously RB cord-001734-bbeznd3r 33 13 folds fold VBZ cord-001734-bbeznd3r 33 14 into into IN cord-001734-bbeznd3r 33 15 the the DT cord-001734-bbeznd3r 33 16 well well RB cord-001734-bbeznd3r 33 17 - - HYPH cord-001734-bbeznd3r 33 18 structured structure VBN cord-001734-bbeznd3r 33 19 and and CC cord-001734-bbeznd3r 33 20 active active JJ cord-001734-bbeznd3r 33 21 enzyme enzyme NN cord-001734-bbeznd3r 33 22 highly highly RB cord-001734-bbeznd3r 33 23 similar similar JJ cord-001734-bbeznd3r 33 24 to to IN cord-001734-bbeznd3r 33 25 those those DT cord-001734-bbeznd3r 33 26 co co NN cord-001734-bbeznd3r 33 27 - - VBN cord-001734-bbeznd3r 33 28 expressed express VBN cord-001734-bbeznd3r 33 29 [ [ -LRB- cord-001734-bbeznd3r 33 30 10 10 CD cord-001734-bbeznd3r 33 31 , , , cord-001734-bbeznd3r 33 32 11 11 CD cord-001734-bbeznd3r 33 33 ] ] -RRB- cord-001734-bbeznd3r 33 34 . . . cord-001734-bbeznd3r 34 1 We -PRON- PRP cord-001734-bbeznd3r 34 2 have have VBP cord-001734-bbeznd3r 34 3 also also RB cord-001734-bbeznd3r 34 4 successfully successfully RB cord-001734-bbeznd3r 34 5 refolded refolde VBN cord-001734-bbeznd3r 34 6 the the DT cord-001734-bbeznd3r 34 7 NS3pro ns3pro NN cord-001734-bbeznd3r 34 8 complexed complexed JJ cord-001734-bbeznd3r 34 9 with with IN cord-001734-bbeznd3r 34 10 the the DT cord-001734-bbeznd3r 34 11 full full JJ cord-001734-bbeznd3r 34 12 - - HYPH cord-001734-bbeznd3r 34 13 length length NN cord-001734-bbeznd3r 34 14 NS2B NS2B NNP cord-001734-bbeznd3r 34 15 anchored anchor VBN cord-001734-bbeznd3r 34 16 into into IN cord-001734-bbeznd3r 34 17 the the DT cord-001734-bbeznd3r 34 18 LMPC LMPC NNP cord-001734-bbeznd3r 34 19 micelle micelle NN cord-001734-bbeznd3r 34 20 . . . cord-001734-bbeznd3r 35 1 To to TO cord-001734-bbeznd3r 35 2 further further RB cord-001734-bbeznd3r 35 3 decipher decipher VB cord-001734-bbeznd3r 35 4 the the DT cord-001734-bbeznd3r 35 5 roles role NNS cord-001734-bbeznd3r 35 6 of of IN cord-001734-bbeznd3r 35 7 the the DT cord-001734-bbeznd3r 35 8 NS2B NS2B NNP cord-001734-bbeznd3r 35 9 cofactor cofactor NN cord-001734-bbeznd3r 35 10 in in IN cord-001734-bbeznd3r 35 11 protein protein NN cord-001734-bbeznd3r 35 12 dynamics dynamic NNS cord-001734-bbeznd3r 35 13 , , , cord-001734-bbeznd3r 35 14 we -PRON- PRP cord-001734-bbeznd3r 35 15 performed perform VBD cord-001734-bbeznd3r 35 16 molecular molecular JJ cord-001734-bbeznd3r 35 17 dynamics dynamic NNS cord-001734-bbeznd3r 35 18 ( ( -LRB- cord-001734-bbeznd3r 35 19 MD MD NNP cord-001734-bbeznd3r 35 20 ) ) -RRB- cord-001734-bbeznd3r 35 21 simulations simulation NNS cord-001734-bbeznd3r 35 22 which which WDT cord-001734-bbeznd3r 35 23 is be VBZ cord-001734-bbeznd3r 35 24 very very RB cord-001734-bbeznd3r 35 25 powerful powerful JJ cord-001734-bbeznd3r 35 26 in in IN cord-001734-bbeznd3r 35 27 pinpointing pinpoint VBG cord-001734-bbeznd3r 35 28 the the DT cord-001734-bbeznd3r 35 29 role role NN cord-001734-bbeznd3r 35 30 of of IN cord-001734-bbeznd3r 35 31 protein protein NN cord-001734-bbeznd3r 35 32 dynamics dynamic NNS cord-001734-bbeznd3r 35 33 in in IN cord-001734-bbeznd3r 35 34 the the DT cord-001734-bbeznd3r 35 35 catalysis catalysis NN cord-001734-bbeznd3r 35 36 of of IN cord-001734-bbeznd3r 35 37 proteases protease NNS cord-001734-bbeznd3r 35 38 such such JJ cord-001734-bbeznd3r 35 39 as as IN cord-001734-bbeznd3r 35 40 the the DT cord-001734-bbeznd3r 35 41 SARS SARS NNP cord-001734-bbeznd3r 35 42 3C 3C NNP cord-001734-bbeznd3r 35 43 - - HYPH cord-001734-bbeznd3r 35 44 like like JJ cord-001734-bbeznd3r 35 45 protease protease NN cord-001734-bbeznd3r 35 46 [ [ -LRB- cord-001734-bbeznd3r 35 47 20 20 CD cord-001734-bbeznd3r 35 48 , , , cord-001734-bbeznd3r 35 49 21 21 CD cord-001734-bbeznd3r 35 50 ] ] -RRB- cord-001734-bbeznd3r 35 51 . . . cord-001734-bbeznd3r 36 1 The the DT cord-001734-bbeznd3r 36 2 correlation correlation NN cord-001734-bbeznd3r 36 3 analysis analysis NN cord-001734-bbeznd3r 36 4 reveals reveal VBZ cord-001734-bbeznd3r 36 5 that that IN cord-001734-bbeznd3r 36 6 the the DT cord-001734-bbeznd3r 36 7 NS2B NS2B NNP cord-001734-bbeznd3r 36 8 residues residue NNS cord-001734-bbeznd3r 36 9 play play VBP cord-001734-bbeznd3r 36 10 a a DT cord-001734-bbeznd3r 36 11 central central JJ cord-001734-bbeznd3r 36 12 role role NN cord-001734-bbeznd3r 36 13 in in IN cord-001734-bbeznd3r 36 14 coordinating coordinate VBG cord-001734-bbeznd3r 36 15 the the DT cord-001734-bbeznd3r 36 16 correlated correlate VBN cord-001734-bbeznd3r 36 17 motion motion NN cord-001734-bbeznd3r 36 18 network network NN cord-001734-bbeznd3r 36 19 in in IN cord-001734-bbeznd3r 36 20 the the DT cord-001734-bbeznd3r 36 21 NS2B NS2B NNP cord-001734-bbeznd3r 36 22 - - HYPH cord-001734-bbeznd3r 36 23 NS3pro NS3pro NNP cord-001734-bbeznd3r 36 24 complex complex NN cord-001734-bbeznd3r 36 25 . . . cord-001734-bbeznd3r 37 1 Indeed indeed RB cord-001734-bbeznd3r 37 2 , , , cord-001734-bbeznd3r 37 3 a a DT cord-001734-bbeznd3r 37 4 truncated truncated JJ cord-001734-bbeznd3r 37 5 NS2B NS2B NNP cord-001734-bbeznd3r 37 6 is be VBZ cord-001734-bbeznd3r 37 7 able able JJ cord-001734-bbeznd3r 37 8 to to TO cord-001734-bbeznd3r 37 9 form form VB cord-001734-bbeznd3r 37 10 a a DT cord-001734-bbeznd3r 37 11 buffer buffer NN cord-001734-bbeznd3r 37 12 - - HYPH cord-001734-bbeznd3r 37 13 soluble soluble JJ cord-001734-bbeznd3r 37 14 complex complex NN cord-001734-bbeznd3r 37 15 with with IN cord-001734-bbeznd3r 37 16 NS3pro NS3pro NNP cord-001734-bbeznd3r 37 17 , , , cord-001734-bbeznd3r 37 18 but but CC cord-001734-bbeznd3r 37 19 this this DT cord-001734-bbeznd3r 37 20 complex complex NN cord-001734-bbeznd3r 37 21 is be VBZ cord-001734-bbeznd3r 37 22 highly highly RB cord-001734-bbeznd3r 37 23 dynamic dynamic JJ cord-001734-bbeznd3r 37 24 and and CC cord-001734-bbeznd3r 37 25 catalytically catalytically RB cord-001734-bbeznd3r 37 26 - - HYPH cord-001734-bbeznd3r 37 27 impotent impotent JJ cord-001734-bbeznd3r 37 28 . . . cord-001734-bbeznd3r 38 1 Our -PRON- PRP$ cord-001734-bbeznd3r 38 2 results result NNS cord-001734-bbeznd3r 38 3 imply imply VBP cord-001734-bbeznd3r 38 4 that that IN cord-001734-bbeznd3r 38 5 the the DT cord-001734-bbeznd3r 38 6 discovery/ discovery/ CD cord-001734-bbeznd3r 38 7 design design NN cord-001734-bbeznd3r 38 8 of of IN cord-001734-bbeznd3r 38 9 molecules molecule NNS cord-001734-bbeznd3r 38 10 to to TO cord-001734-bbeznd3r 38 11 block block VB cord-001734-bbeznd3r 38 12 the the DT cord-001734-bbeznd3r 38 13 correct correct JJ cord-001734-bbeznd3r 38 14 folding folding NN cord-001734-bbeznd3r 38 15 of of IN cord-001734-bbeznd3r 38 16 the the DT cord-001734-bbeznd3r 38 17 NS2B NS2B NNP cord-001734-bbeznd3r 38 18 - - HYPH cord-001734-bbeznd3r 38 19 NS3pro NS3pro NNP cord-001734-bbeznd3r 38 20 complex complex NN cord-001734-bbeznd3r 38 21 or or CC cord-001734-bbeznd3r 38 22 / / SYM cord-001734-bbeznd3r 38 23 and and CC cord-001734-bbeznd3r 38 24 to to TO cord-001734-bbeznd3r 38 25 decouple decouple VB cord-001734-bbeznd3r 38 26 its -PRON- PRP$ cord-001734-bbeznd3r 38 27 correlated correlate VBN cord-001734-bbeznd3r 38 28 motion motion NN cord-001734-bbeznd3r 38 29 network network NN cord-001734-bbeznd3r 38 30 might may MD cord-001734-bbeznd3r 38 31 represent represent VB cord-001734-bbeznd3r 38 32 promising promising JJ cord-001734-bbeznd3r 38 33 strategies strategy NNS cord-001734-bbeznd3r 38 34 to to TO cord-001734-bbeznd3r 38 35 inhibit inhibit VB cord-001734-bbeznd3r 38 36 the the DT cord-001734-bbeznd3r 38 37 dengue dengue NN cord-001734-bbeznd3r 38 38 protease protease NN cord-001734-bbeznd3r 38 39 , , , cord-001734-bbeznd3r 38 40 thus thus RB cord-001734-bbeznd3r 38 41 holding hold VBG cord-001734-bbeznd3r 38 42 the the DT cord-001734-bbeznd3r 38 43 considerable considerable JJ cord-001734-bbeznd3r 38 44 potential potential NN cord-001734-bbeznd3r 38 45 to to TO cord-001734-bbeznd3r 38 46 treat treat VB cord-001734-bbeznd3r 38 47 dengue dengue NN cord-001734-bbeznd3r 38 48 infections infection NNS cord-001734-bbeznd3r 38 49 . . . cord-001734-bbeznd3r 39 1 Plasmid plasmid NN cord-001734-bbeznd3r 39 2 construction construction NN cord-001734-bbeznd3r 39 3 DNA dna NN cord-001734-bbeznd3r 39 4 sequences sequence NNS cord-001734-bbeznd3r 39 5 encoding encode VBG cord-001734-bbeznd3r 39 6 the the DT cord-001734-bbeznd3r 39 7 NS3 ns3 JJ cord-001734-bbeznd3r 39 8 protease protease NN cord-001734-bbeznd3r 39 9 and and CC cord-001734-bbeznd3r 39 10 NS2B NS2B NNP cord-001734-bbeznd3r 39 11 from from IN cord-001734-bbeznd3r 39 12 Dengue Dengue NNP cord-001734-bbeznd3r 39 13 virus virus NN cord-001734-bbeznd3r 39 14 type type NN cord-001734-bbeznd3r 39 15 2 2 CD cord-001734-bbeznd3r 39 16 strain strain NN cord-001734-bbeznd3r 40 1 TSV01 TSV01 NNP cord-001734-bbeznd3r 41 1 ( ( -LRB- cord-001734-bbeznd3r 41 2 GenBank GenBank NNP cord-001734-bbeznd3r 41 3 accession accession NN cord-001734-bbeznd3r 41 4 number number NN cord-001734-bbeznd3r 42 1 AY037116 AY037116 NNP cord-001734-bbeznd3r 42 2 ) ) -RRB- cord-001734-bbeznd3r 42 3 were be VBD cord-001734-bbeznd3r 42 4 optimized optimize VBN cord-001734-bbeznd3r 42 5 and and CC cord-001734-bbeznd3r 42 6 synthesized synthesize VBN cord-001734-bbeznd3r 42 7 by by IN cord-001734-bbeznd3r 42 8 GenScript GenScript NNP cord-001734-bbeznd3r 42 9 ( ( -LRB- cord-001734-bbeznd3r 42 10 Piscataway Piscataway NNP cord-001734-bbeznd3r 42 11 , , , cord-001734-bbeznd3r 42 12 NJ NJ NNP cord-001734-bbeznd3r 42 13 ) ) -RRB- cord-001734-bbeznd3r 42 14 . . . cord-001734-bbeznd3r 43 1 With with IN cord-001734-bbeznd3r 43 2 designed design VBN cord-001734-bbeznd3r 43 3 primers primer NNS cord-001734-bbeznd3r 43 4 , , , cord-001734-bbeznd3r 43 5 the the DT cord-001734-bbeznd3r 43 6 optimized optimize VBN cord-001734-bbeznd3r 43 7 DNA DNA NNP cord-001734-bbeznd3r 43 8 by by IN cord-001734-bbeznd3r 43 9 GenScript GenScript NNP cord-001734-bbeznd3r 43 10 were be VBD cord-001734-bbeznd3r 43 11 used use VBN cord-001734-bbeznd3r 43 12 as as IN cord-001734-bbeznd3r 43 13 templates template NNS cord-001734-bbeznd3r 43 14 for for IN cord-001734-bbeznd3r 43 15 amplifying amplify VBG cord-001734-bbeznd3r 43 16 the the DT cord-001734-bbeznd3r 43 17 DNA dna NN cord-001734-bbeznd3r 43 18 fragments fragment NNS cord-001734-bbeznd3r 43 19 encoding encode VBG cord-001734-bbeznd3r 43 20 residues residue NNS cord-001734-bbeznd3r 43 21 14 14 CD cord-001734-bbeznd3r 43 22 - - SYM cord-001734-bbeznd3r 43 23 185 185 CD cord-001734-bbeznd3r 43 24 of of IN cord-001734-bbeznd3r 43 25 NS3pro NS3pro NNS cord-001734-bbeznd3r 43 26 and and CC cord-001734-bbeznd3r 43 27 residues residue NNS cord-001734-bbeznd3r 43 28 48 48 CD cord-001734-bbeznd3r 43 29 - - SYM cord-001734-bbeznd3r 43 30 100 100 CD cord-001734-bbeznd3r 43 31 of of IN cord-001734-bbeznd3r 43 32 NS2B NS2B NNP cord-001734-bbeznd3r 43 33 , , , cord-001734-bbeznd3r 43 34 which which WDT cord-001734-bbeznd3r 43 35 have have VBP cord-001734-bbeznd3r 43 36 the the DT cord-001734-bbeznd3r 43 37 same same JJ cord-001734-bbeznd3r 43 38 starting starting NN cord-001734-bbeznd3r 43 39 and and CC cord-001734-bbeznd3r 43 40 ending end VBG cord-001734-bbeznd3r 43 41 residues residue NNS cord-001734-bbeznd3r 43 42 as as IN cord-001734-bbeznd3r 43 43 the the DT cord-001734-bbeznd3r 43 44 constructs construct NNS cord-001734-bbeznd3r 43 45 used use VBN cord-001734-bbeznd3r 43 46 in in IN cord-001734-bbeznd3r 43 47 the the DT cord-001734-bbeznd3r 43 48 previous previous JJ cord-001734-bbeznd3r 43 49 NMR NMR NNP cord-001734-bbeznd3r 43 50 study study NN cord-001734-bbeznd3r 43 51 [ [ -LRB- cord-001734-bbeznd3r 43 52 10 10 CD cord-001734-bbeznd3r 43 53 ] ] -RRB- cord-001734-bbeznd3r 43 54 , , , cord-001734-bbeznd3r 43 55 as as RB cord-001734-bbeznd3r 43 56 well well RB cord-001734-bbeznd3r 43 57 as as IN cord-001734-bbeznd3r 43 58 the the DT cord-001734-bbeznd3r 43 59 full full JJ cord-001734-bbeznd3r 43 60 - - HYPH cord-001734-bbeznd3r 43 61 length length NN cord-001734-bbeznd3r 43 62 NS2B NS2B NNP cord-001734-bbeznd3r 43 63 over over IN cord-001734-bbeznd3r 43 64 residues residue NNS cord-001734-bbeznd3r 43 65 1 1 CD cord-001734-bbeznd3r 43 66 - - SYM cord-001734-bbeznd3r 43 67 130 130 CD cord-001734-bbeznd3r 43 68 including include VBG cord-001734-bbeznd3r 43 69 the the DT cord-001734-bbeznd3r 43 70 N N NNP cord-001734-bbeznd3r 43 71 - - HYPH cord-001734-bbeznd3r 43 72 and and CC cord-001734-bbeznd3r 43 73 C C NNP cord-001734-bbeznd3r 43 74 - - HYPH cord-001734-bbeznd3r 43 75 terminal terminal NN cord-001734-bbeznd3r 43 76 transmembrane transmembrane NN cord-001734-bbeznd3r 43 77 domains domain NNS cord-001734-bbeznd3r 43 78 . . . cord-001734-bbeznd3r 44 1 Amplified amplify VBN cord-001734-bbeznd3r 44 2 DNA dna NN cord-001734-bbeznd3r 44 3 fragments fragment NNS cord-001734-bbeznd3r 44 4 for for IN cord-001734-bbeznd3r 44 5 NS3 ns3 RB cord-001734-bbeznd3r 44 6 ( ( -LRB- cord-001734-bbeznd3r 44 7 14 14 CD cord-001734-bbeznd3r 44 8 - - SYM cord-001734-bbeznd3r 44 9 185 185 CD cord-001734-bbeznd3r 44 10 ) ) -RRB- cord-001734-bbeznd3r 44 11 , , . cord-001734-bbeznd3r 45 1 NS2B NS2B NNP cord-001734-bbeznd3r 45 2 ( ( -LRB- cord-001734-bbeznd3r 45 3 1 1 CD cord-001734-bbeznd3r 45 4 - - SYM cord-001734-bbeznd3r 45 5 130 130 CD cord-001734-bbeznd3r 45 6 ) ) -RRB- cord-001734-bbeznd3r 45 7 and and CC cord-001734-bbeznd3r 45 8 were be VBD cord-001734-bbeznd3r 45 9 subsequently subsequently RB cord-001734-bbeznd3r 45 10 cloned clone VBN cord-001734-bbeznd3r 45 11 into into IN cord-001734-bbeznd3r 45 12 pET28a pet28a JJ cord-001734-bbeznd3r 45 13 vector vector NN cord-001734-bbeznd3r 45 14 with with IN cord-001734-bbeznd3r 45 15 N n CD cord-001734-bbeznd3r 45 16 - - HYPH cord-001734-bbeznd3r 45 17 terminal terminal NN cord-001734-bbeznd3r 45 18 His -PRON- PRP$ cord-001734-bbeznd3r 45 19 - - HYPH cord-001734-bbeznd3r 45 20 tag tag NN cord-001734-bbeznd3r 45 21 ( ( -LRB- cord-001734-bbeznd3r 45 22 Novagen Novagen NNP cord-001734-bbeznd3r 45 23 ) ) -RRB- cord-001734-bbeznd3r 45 24 using use VBG cord-001734-bbeznd3r 45 25 NcoI NcoI NNP cord-001734-bbeznd3r 45 26 and and CC cord-001734-bbeznd3r 45 27 XhoI XhoI NNP cord-001734-bbeznd3r 45 28 restriction restriction NN cord-001734-bbeznd3r 45 29 sites site NNS cord-001734-bbeznd3r 45 30 , , , cord-001734-bbeznd3r 45 31 while while IN cord-001734-bbeznd3r 45 32 fragments fragment NNS cord-001734-bbeznd3r 45 33 for for IN cord-001734-bbeznd3r 45 34 NS2B NS2B NNP cord-001734-bbeznd3r 45 35 ( ( -LRB- cord-001734-bbeznd3r 45 36 48 48 CD cord-001734-bbeznd3r 45 37 - - SYM cord-001734-bbeznd3r 45 38 100 100 CD cord-001734-bbeznd3r 45 39 ) ) -RRB- cord-001734-bbeznd3r 45 40 and and CC cord-001734-bbeznd3r 45 41 NS2B NS2B NNP cord-001734-bbeznd3r 45 42 ( ( -LRB- cord-001734-bbeznd3r 45 43 48 48 CD cord-001734-bbeznd3r 45 44 - - SYM cord-001734-bbeznd3r 45 45 100 100 CD cord-001734-bbeznd3r 45 46 ; ; : cord-001734-bbeznd3r 45 47 Δ77 Δ77 NNP cord-001734-bbeznd3r 45 48 - - HYPH cord-001734-bbeznd3r 45 49 84 84 CD cord-001734-bbeznd3r 45 50 ) ) -RRB- cord-001734-bbeznd3r 45 51 with with IN cord-001734-bbeznd3r 45 52 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 45 53 replaced replace VBN cord-001734-bbeznd3r 45 54 by by IN cord-001734-bbeznd3r 45 55 three three CD cord-001734-bbeznd3r 45 56 Gly Gly NNP cord-001734-bbeznd3r 45 57 residues residue NNS cord-001734-bbeznd3r 45 58 were be VBD cord-001734-bbeznd3r 45 59 cloned clone VBN cord-001734-bbeznd3r 45 60 into into IN cord-001734-bbeznd3r 45 61 pGEX-4T1 pgex-4t1 JJ cord-001734-bbeznd3r 45 62 vector vector NN cord-001734-bbeznd3r 45 63 with with IN cord-001734-bbeznd3r 45 64 GST gst NN cord-001734-bbeznd3r 45 65 - - HYPH cord-001734-bbeznd3r 45 66 tag tag NN cord-001734-bbeznd3r 45 67 ( ( -LRB- cord-001734-bbeznd3r 45 68 GE GE NNP cord-001734-bbeznd3r 45 69 healthcare healthcare NN cord-001734-bbeznd3r 45 70 ) ) -RRB- cord-001734-bbeznd3r 45 71 using use VBG cord-001734-bbeznd3r 45 72 BamHI BamHI NNP cord-001734-bbeznd3r 45 73 and and CC cord-001734-bbeznd3r 45 74 XhoI XhoI NNP cord-001734-bbeznd3r 45 75 restriction restriction NN cord-001734-bbeznd3r 45 76 sites site NNS cord-001734-bbeznd3r 45 77 . . . cord-001734-bbeznd3r 46 1 DNA dna NN cord-001734-bbeznd3r 46 2 sequences sequence NNS cord-001734-bbeznd3r 46 3 of of IN cord-001734-bbeznd3r 46 4 cloned clone VBN cord-001734-bbeznd3r 46 5 constructs construct NNS cord-001734-bbeznd3r 46 6 were be VBD cord-001734-bbeznd3r 46 7 verified verify VBN cord-001734-bbeznd3r 46 8 by by IN cord-001734-bbeznd3r 46 9 automated automate VBN cord-001734-bbeznd3r 46 10 DNA dna NN cord-001734-bbeznd3r 46 11 sequencing sequencing NN cord-001734-bbeznd3r 46 12 . . . cord-001734-bbeznd3r 47 1 Competent competent JJ cord-001734-bbeznd3r 47 2 Escherichia Escherichia NNP cord-001734-bbeznd3r 47 3 coli coli NNS cord-001734-bbeznd3r 48 1 BL21 BL21 NNP cord-001734-bbeznd3r 48 2 ( ( -LRB- cord-001734-bbeznd3r 48 3 DE3 DE3 NNP cord-001734-bbeznd3r 48 4 ) ) -RRB- cord-001734-bbeznd3r 48 5 Star Star NNP cord-001734-bbeznd3r 48 6 cells cell NNS cord-001734-bbeznd3r 48 7 were be VBD cord-001734-bbeznd3r 48 8 transformed transform VBN cord-001734-bbeznd3r 48 9 with with IN cord-001734-bbeznd3r 48 10 pET28a pet28a JJ cord-001734-bbeznd3r 48 11 - - HYPH cord-001734-bbeznd3r 48 12 NS3pro ns3pro NN cord-001734-bbeznd3r 48 13 or or CC cord-001734-bbeznd3r 48 14 pGEX-4T1-NS2B pGEX-4T1-NS2B NNP cord-001734-bbeznd3r 48 15 plasmids plasmid NNS cord-001734-bbeznd3r 48 16 . . . cord-001734-bbeznd3r 49 1 Transformed transform VBN cord-001734-bbeznd3r 49 2 single single JJ cord-001734-bbeznd3r 49 3 colony colony NN cord-001734-bbeznd3r 49 4 was be VBD cord-001734-bbeznd3r 49 5 inoculated inoculate VBN cord-001734-bbeznd3r 49 6 overnight overnight RB cord-001734-bbeznd3r 49 7 in in IN cord-001734-bbeznd3r 49 8 10 10 CD cord-001734-bbeznd3r 49 9 ml ml NNP cord-001734-bbeznd3r 49 10 Luria Luria NNP cord-001734-bbeznd3r 49 11 - - HYPH cord-001734-bbeznd3r 49 12 Bertani Bertani NNP cord-001734-bbeznd3r 49 13 broth broth NN cord-001734-bbeznd3r 49 14 containing contain VBG cord-001734-bbeznd3r 49 15 25 25 CD cord-001734-bbeznd3r 49 16 μg μg NNS cord-001734-bbeznd3r 49 17 / / SYM cord-001734-bbeznd3r 49 18 ml ml IN cord-001734-bbeznd3r 49 19 kanamycin kanamycin NNP cord-001734-bbeznd3r 49 20 for for IN cord-001734-bbeznd3r 49 21 pET28a pET28a NNP cord-001734-bbeznd3r 49 22 and and CC cord-001734-bbeznd3r 49 23 100 100 CD cord-001734-bbeznd3r 49 24 μg μg NN cord-001734-bbeznd3r 49 25 / / SYM cord-001734-bbeznd3r 49 26 ml ml XX cord-001734-bbeznd3r 49 27 ampicillin ampicillin NN cord-001734-bbeznd3r 49 28 for for IN cord-001734-bbeznd3r 49 29 pGEX-4T1 pGEX-4T1 NNP cord-001734-bbeznd3r 49 30 . . . cord-001734-bbeznd3r 50 1 Then then RB cord-001734-bbeznd3r 50 2 cells cell NNS cord-001734-bbeznd3r 50 3 were be VBD cord-001734-bbeznd3r 50 4 transferred transfer VBN cord-001734-bbeznd3r 50 5 to to IN cord-001734-bbeznd3r 50 6 1 1 CD cord-001734-bbeznd3r 50 7 lit light VBD cord-001734-bbeznd3r 50 8 LB LB NNP cord-001734-bbeznd3r 50 9 media medium NNS cord-001734-bbeznd3r 50 10 containing contain VBG cord-001734-bbeznd3r 50 11 respective respective JJ cord-001734-bbeznd3r 50 12 antibiotics antibiotic NNS cord-001734-bbeznd3r 50 13 and and CC cord-001734-bbeznd3r 50 14 grown grow VBN cord-001734-bbeznd3r 50 15 at at IN cord-001734-bbeznd3r 50 16 37 37 CD cord-001734-bbeznd3r 50 17 ° ° NN cord-001734-bbeznd3r 50 18 C c NN cord-001734-bbeznd3r 50 19 with with IN cord-001734-bbeznd3r 50 20 shaking shake VBG cord-001734-bbeznd3r 50 21 until until IN cord-001734-bbeznd3r 50 22 the the DT cord-001734-bbeznd3r 50 23 A A NNP cord-001734-bbeznd3r 50 24 600 600 CD cord-001734-bbeznd3r 50 25 reached reach VBD cord-001734-bbeznd3r 50 26 to to IN cord-001734-bbeznd3r 50 27 0.6 0.6 CD cord-001734-bbeznd3r 50 28 . . . cord-001734-bbeznd3r 51 1 Cultures culture NNS cord-001734-bbeznd3r 51 2 were be VBD cord-001734-bbeznd3r 51 3 induced induce VBN cord-001734-bbeznd3r 51 4 with with IN cord-001734-bbeznd3r 51 5 0.5 0.5 CD cord-001734-bbeznd3r 51 6 mM mm CD cord-001734-bbeznd3r 51 7 isopropyl isopropyl NN cord-001734-bbeznd3r 51 8 β β NN cord-001734-bbeznd3r 51 9 - - HYPH cord-001734-bbeznd3r 51 10 D D NNP cord-001734-bbeznd3r 51 11 - - HYPH cord-001734-bbeznd3r 51 12 thiogalactopyranoside thiogalactopyranoside NN cord-001734-bbeznd3r 51 13 ( ( -LRB- cord-001734-bbeznd3r 51 14 IPTG IPTG NNP cord-001734-bbeznd3r 51 15 ) ) -RRB- cord-001734-bbeznd3r 51 16 for for IN cord-001734-bbeznd3r 51 17 16 16 CD cord-001734-bbeznd3r 51 18 h h NN cord-001734-bbeznd3r 51 19 at at IN cord-001734-bbeznd3r 51 20 20 20 CD cord-001734-bbeznd3r 51 21 ° ° NN cord-001734-bbeznd3r 51 22 C c NN cord-001734-bbeznd3r 51 23 . . . cord-001734-bbeznd3r 52 1 Cells cell NNS cord-001734-bbeznd3r 52 2 were be VBD cord-001734-bbeznd3r 52 3 harvested harvest VBN cord-001734-bbeznd3r 52 4 and and CC cord-001734-bbeznd3r 52 5 resuspended resuspend VBN cord-001734-bbeznd3r 52 6 in in IN cord-001734-bbeznd3r 52 7 cold cold JJ cord-001734-bbeznd3r 52 8 Phosphate Phosphate NNP cord-001734-bbeznd3r 52 9 Buffered buffer VBN cord-001734-bbeznd3r 52 10 Saline Saline NNP cord-001734-bbeznd3r 52 11 ( ( -LRB- cord-001734-bbeznd3r 52 12 PBS PBS NNP cord-001734-bbeznd3r 52 13 ) ) -RRB- cord-001734-bbeznd3r 52 14 pH ph NN cord-001734-bbeznd3r 52 15 7.4 7.4 CD cord-001734-bbeznd3r 52 16 buffer buffer NN cord-001734-bbeznd3r 52 17 for for IN cord-001734-bbeznd3r 52 18 lysis lysis NN cord-001734-bbeznd3r 52 19 by by IN cord-001734-bbeznd3r 52 20 sonication sonication NN cord-001734-bbeznd3r 52 21 . . . cord-001734-bbeznd3r 53 1 After after IN cord-001734-bbeznd3r 53 2 centrifugation centrifugation NN cord-001734-bbeznd3r 53 3 at at IN cord-001734-bbeznd3r 53 4 40000 40000 CD cord-001734-bbeznd3r 53 5 g g NN cord-001734-bbeznd3r 53 6 , , , cord-001734-bbeznd3r 53 7 GST GST NNP cord-001734-bbeznd3r 53 8 - - HYPH cord-001734-bbeznd3r 53 9 tagged tag VBN cord-001734-bbeznd3r 53 10 NS2B NS2B NNP cord-001734-bbeznd3r 53 11 ( ( -LRB- cord-001734-bbeznd3r 53 12 48 48 CD cord-001734-bbeznd3r 53 13 - - SYM cord-001734-bbeznd3r 53 14 100 100 CD cord-001734-bbeznd3r 53 15 ) ) -RRB- cord-001734-bbeznd3r 53 16 protein protein NN cord-001734-bbeznd3r 53 17 was be VBD cord-001734-bbeznd3r 53 18 purified purify VBN cord-001734-bbeznd3r 53 19 from from IN cord-001734-bbeznd3r 53 20 supernatant supernatant JJ cord-001734-bbeznd3r 53 21 using use VBG cord-001734-bbeznd3r 53 22 affinity affinity NN cord-001734-bbeznd3r 53 23 chromatography chromatography NN cord-001734-bbeznd3r 53 24 . . . cord-001734-bbeznd3r 54 1 The the DT cord-001734-bbeznd3r 54 2 GST GST NNP cord-001734-bbeznd3r 54 3 - - HYPH cord-001734-bbeznd3r 54 4 NS2B NS2B NNP cord-001734-bbeznd3r 54 5 ( ( -LRB- cord-001734-bbeznd3r 54 6 48 48 CD cord-001734-bbeznd3r 54 7 - - SYM cord-001734-bbeznd3r 54 8 100 100 CD cord-001734-bbeznd3r 54 9 ) ) -RRB- cord-001734-bbeznd3r 54 10 protein protein NN cord-001734-bbeznd3r 54 11 was be VBD cord-001734-bbeznd3r 54 12 cleaved cleave VBN cord-001734-bbeznd3r 54 13 with with IN cord-001734-bbeznd3r 54 14 thrombin thrombin NN cord-001734-bbeznd3r 54 15 to to TO cord-001734-bbeznd3r 54 16 remove remove VB cord-001734-bbeznd3r 54 17 the the DT cord-001734-bbeznd3r 54 18 GST gst NN cord-001734-bbeznd3r 54 19 tag tag NN cord-001734-bbeznd3r 54 20 , , , cord-001734-bbeznd3r 54 21 and and CC cord-001734-bbeznd3r 54 22 the the DT cord-001734-bbeznd3r 54 23 released release VBN cord-001734-bbeznd3r 54 24 NS2B NS2B NNP cord-001734-bbeznd3r 54 25 peptide peptide NN cord-001734-bbeznd3r 54 26 was be VBD cord-001734-bbeznd3r 54 27 further further RB cord-001734-bbeznd3r 54 28 purified purify VBN cord-001734-bbeznd3r 54 29 by by IN cord-001734-bbeznd3r 54 30 RP RP NNP cord-001734-bbeznd3r 54 31 - - HYPH cord-001734-bbeznd3r 54 32 HPLC HPLC NNP cord-001734-bbeznd3r 54 33 on on IN cord-001734-bbeznd3r 54 34 a a DT cord-001734-bbeznd3r 54 35 Vydac Vydac NNP cord-001734-bbeznd3r 54 36 C C NNP cord-001734-bbeznd3r 54 37 8 8 CD cord-001734-bbeznd3r 54 38 column column NN cord-001734-bbeznd3r 54 39 . . . cord-001734-bbeznd3r 55 1 The the DT cord-001734-bbeznd3r 55 2 NS2B NS2B NNP cord-001734-bbeznd3r 55 3 ( ( -LRB- cord-001734-bbeznd3r 55 4 1 1 CD cord-001734-bbeznd3r 55 5 - - SYM cord-001734-bbeznd3r 55 6 130 130 CD cord-001734-bbeznd3r 55 7 ) ) -RRB- cord-001734-bbeznd3r 55 8 and and CC cord-001734-bbeznd3r 55 9 NS3pro NS3pro NNP cord-001734-bbeznd3r 55 10 proteins protein NNS cord-001734-bbeznd3r 55 11 were be VBD cord-001734-bbeznd3r 55 12 completely completely RB cord-001734-bbeznd3r 55 13 insoluble insoluble JJ cord-001734-bbeznd3r 55 14 and and CC cord-001734-bbeznd3r 55 15 all all DT cord-001734-bbeznd3r 55 16 found find VBN cord-001734-bbeznd3r 55 17 in in IN cord-001734-bbeznd3r 55 18 inclusion inclusion NN cord-001734-bbeznd3r 55 19 body body NN cord-001734-bbeznd3r 55 20 , , , cord-001734-bbeznd3r 55 21 which which WDT cord-001734-bbeznd3r 55 22 were be VBD cord-001734-bbeznd3r 55 23 solubilized solubilize VBN cord-001734-bbeznd3r 55 24 with with IN cord-001734-bbeznd3r 55 25 PBS PBS NNP cord-001734-bbeznd3r 55 26 buffer buffer NN cord-001734-bbeznd3r 55 27 ( ( -LRB- cord-001734-bbeznd3r 55 28 pH7.4 pH7.4 NNP cord-001734-bbeznd3r 55 29 ) ) -RRB- cord-001734-bbeznd3r 55 30 containing contain VBG cord-001734-bbeznd3r 55 31 8 8 CD cord-001734-bbeznd3r 55 32 M M NNP cord-001734-bbeznd3r 55 33 urea urea NN cord-001734-bbeznd3r 55 34 . . . cord-001734-bbeznd3r 56 1 Cell cell NN cord-001734-bbeznd3r 56 2 debris debris NN cord-001734-bbeznd3r 56 3 was be VBD cord-001734-bbeznd3r 56 4 removed remove VBN cord-001734-bbeznd3r 56 5 by by IN cord-001734-bbeznd3r 56 6 centrifugation centrifugation NN cord-001734-bbeznd3r 56 7 at at IN cord-001734-bbeznd3r 56 8 40000 40000 CD cord-001734-bbeznd3r 56 9 g g NN cord-001734-bbeznd3r 56 10 , , , cord-001734-bbeznd3r 56 11 and and CC cord-001734-bbeznd3r 56 12 supernatant supernatant JJ cord-001734-bbeznd3r 56 13 containing contain VBG cord-001734-bbeznd3r 56 14 His -PRON- PRP$ cord-001734-bbeznd3r 56 15 - - HYPH cord-001734-bbeznd3r 56 16 tagged tag VBN cord-001734-bbeznd3r 56 17 NS2B NS2B NNP cord-001734-bbeznd3r 56 18 ( ( -LRB- cord-001734-bbeznd3r 56 19 1 1 CD cord-001734-bbeznd3r 56 20 - - SYM cord-001734-bbeznd3r 56 21 130 130 CD cord-001734-bbeznd3r 56 22 ) ) -RRB- cord-001734-bbeznd3r 56 23 and and CC cord-001734-bbeznd3r 56 24 NS3pro NS3pro NNP cord-001734-bbeznd3r 56 25 were be VBD cord-001734-bbeznd3r 56 26 purified purify VBN cord-001734-bbeznd3r 56 27 by by IN cord-001734-bbeznd3r 56 28 Ni Ni NNP cord-001734-bbeznd3r 56 29 - - HYPH cord-001734-bbeznd3r 56 30 NTA NTA NNP cord-001734-bbeznd3r 56 31 affinity affinity NN cord-001734-bbeznd3r 56 32 chromatography chromatography NN cord-001734-bbeznd3r 56 33 under under IN cord-001734-bbeznd3r 56 34 denaturing denature VBG cord-001734-bbeznd3r 56 35 condition condition NN cord-001734-bbeznd3r 56 36 . . . cord-001734-bbeznd3r 57 1 Eluted Eluted NNP cord-001734-bbeznd3r 57 2 protein protein NN cord-001734-bbeznd3r 57 3 was be VBD cord-001734-bbeznd3r 57 4 further further RB cord-001734-bbeznd3r 57 5 purified purify VBN cord-001734-bbeznd3r 57 6 with with IN cord-001734-bbeznd3r 57 7 RP RP NNP cord-001734-bbeznd3r 57 8 - - HYPH cord-001734-bbeznd3r 57 9 HPLC HPLC NNP cord-001734-bbeznd3r 57 10 on on IN cord-001734-bbeznd3r 57 11 a a DT cord-001734-bbeznd3r 57 12 Vydac Vydac NNP cord-001734-bbeznd3r 57 13 C C NNP cord-001734-bbeznd3r 57 14 8 8 CD cord-001734-bbeznd3r 57 15 column column NN cord-001734-bbeznd3r 57 16 . . . cord-001734-bbeznd3r 58 1 ( ( -LRB- cord-001734-bbeznd3r 58 2 15 15 CD cord-001734-bbeznd3r 58 3 NH NH NNP cord-001734-bbeznd3r 58 4 4 4 CD cord-001734-bbeznd3r 58 5 ) ) -RRB- cord-001734-bbeznd3r 58 6 2 2 CD cord-001734-bbeznd3r 58 7 SO so IN cord-001734-bbeznd3r 58 8 4 4 CD cord-001734-bbeznd3r 58 9 , , , cord-001734-bbeznd3r 58 10 [ [ -LRB- cord-001734-bbeznd3r 58 11 13 13 CD cord-001734-bbeznd3r 58 12 C6]-glucose C6]-glucose NNP cord-001734-bbeznd3r 58 13 and and CC cord-001734-bbeznd3r 58 14 D d NN cord-001734-bbeznd3r 58 15 2 2 CD cord-001734-bbeznd3r 59 1 O o UH cord-001734-bbeznd3r 59 2 were be VBD cord-001734-bbeznd3r 59 3 purchased purchase VBN cord-001734-bbeznd3r 59 4 from from IN cord-001734-bbeznd3r 59 5 Cambridge Cambridge NNP cord-001734-bbeznd3r 59 6 Isotope Isotope NNP cord-001734-bbeznd3r 59 7 Laboratories Laboratories NNP cord-001734-bbeznd3r 59 8 ( ( -LRB- cord-001734-bbeznd3r 59 9 Andover Andover NNP cord-001734-bbeznd3r 59 10 , , , cord-001734-bbeznd3r 59 11 MA MA NNP cord-001734-bbeznd3r 59 12 ) ) -RRB- cord-001734-bbeznd3r 59 13 . . . cord-001734-bbeznd3r 60 1 The the DT cord-001734-bbeznd3r 60 2 generation generation NN cord-001734-bbeznd3r 60 3 of of IN cord-001734-bbeznd3r 60 4 the the DT cord-001734-bbeznd3r 60 5 isotope isotope NN cord-001734-bbeznd3r 60 6 - - HYPH cord-001734-bbeznd3r 60 7 labeled label VBN cord-001734-bbeznd3r 60 8 proteins protein NNS cord-001734-bbeznd3r 60 9 for for IN cord-001734-bbeznd3r 60 10 NMR NMR NNP cord-001734-bbeznd3r 60 11 studies study NNS cord-001734-bbeznd3r 60 12 followed follow VBD cord-001734-bbeznd3r 60 13 a a DT cord-001734-bbeznd3r 60 14 similar similar JJ cord-001734-bbeznd3r 60 15 procedure procedure NN cord-001734-bbeznd3r 60 16 except except IN cord-001734-bbeznd3r 60 17 that that IN cord-001734-bbeznd3r 60 18 the the DT cord-001734-bbeznd3r 60 19 bacteria bacteria NNS cord-001734-bbeznd3r 60 20 were be VBD cord-001734-bbeznd3r 60 21 grown grow VBN cord-001734-bbeznd3r 60 22 in in IN cord-001734-bbeznd3r 60 23 M9 M9 NNP cord-001734-bbeznd3r 60 24 medium medium NN cord-001734-bbeznd3r 60 25 with with IN cord-001734-bbeznd3r 60 26 the the DT cord-001734-bbeznd3r 60 27 addition addition NN cord-001734-bbeznd3r 60 28 of of IN cord-001734-bbeznd3r 60 29 ( ( -LRB- cord-001734-bbeznd3r 60 30 15 15 CD cord-001734-bbeznd3r 60 31 NH NH NNP cord-001734-bbeznd3r 60 32 4 4 CD cord-001734-bbeznd3r 60 33 ) ) -RRB- cord-001734-bbeznd3r 60 34 2 2 CD cord-001734-bbeznd3r 60 35 SO so NN cord-001734-bbeznd3r 60 36 4 4 CD cord-001734-bbeznd3r 60 37 for for IN cord-001734-bbeznd3r 60 38 15 15 CD cord-001734-bbeznd3r 60 39 N n CD cord-001734-bbeznd3r 60 40 labeling labeling NN cord-001734-bbeznd3r 60 41 and and CC cord-001734-bbeznd3r 60 42 ( ( -LRB- cord-001734-bbeznd3r 60 43 15 15 CD cord-001734-bbeznd3r 60 44 NH NH NNP cord-001734-bbeznd3r 60 45 4 4 CD cord-001734-bbeznd3r 60 46 ) ) -RRB- cord-001734-bbeznd3r 60 47 2 2 CD cord-001734-bbeznd3r 61 1 SO so RB cord-001734-bbeznd3r 61 2 4 4 CD cord-001734-bbeznd3r 61 3 / / SYM cord-001734-bbeznd3r 61 4 [ [ -LRB- cord-001734-bbeznd3r 61 5 13 13 CD cord-001734-bbeznd3r 61 6 C]-glucose C]-glucose NNPS cord-001734-bbeznd3r 61 7 for for IN cord-001734-bbeznd3r 61 8 15 15 CD cord-001734-bbeznd3r 61 9 N-/ N-/ NNP cord-001734-bbeznd3r 61 10 13 13 CD cord-001734-bbeznd3r 61 11 C c NN cord-001734-bbeznd3r 61 12 - - HYPH cord-001734-bbeznd3r 61 13 double double JJ cord-001734-bbeznd3r 61 14 labelling labelling NN cord-001734-bbeznd3r 61 15 as as IN cord-001734-bbeznd3r 61 16 previously previously RB cord-001734-bbeznd3r 61 17 described describe VBN cord-001734-bbeznd3r 61 18 [ [ -LRB- cord-001734-bbeznd3r 61 19 22 22 CD cord-001734-bbeznd3r 61 20 ] ] -RRB- cord-001734-bbeznd3r 61 21 . . . cord-001734-bbeznd3r 62 1 The the DT cord-001734-bbeznd3r 62 2 purity purity NN cord-001734-bbeznd3r 62 3 of of IN cord-001734-bbeznd3r 62 4 the the DT cord-001734-bbeznd3r 62 5 recombinant recombinant JJ cord-001734-bbeznd3r 62 6 proteins protein NNS cord-001734-bbeznd3r 62 7 was be VBD cord-001734-bbeznd3r 62 8 checked check VBN cord-001734-bbeznd3r 62 9 by by IN cord-001734-bbeznd3r 62 10 SDS SDS NNP cord-001734-bbeznd3r 62 11 - - HYPH cord-001734-bbeznd3r 62 12 PAGE PAGE NNP cord-001734-bbeznd3r 62 13 gels gel NNS cord-001734-bbeznd3r 62 14 and and CC cord-001734-bbeznd3r 62 15 their -PRON- PRP$ cord-001734-bbeznd3r 62 16 molecular molecular JJ cord-001734-bbeznd3r 62 17 weights weight NNS cord-001734-bbeznd3r 62 18 were be VBD cord-001734-bbeznd3r 62 19 verified verify VBN cord-001734-bbeznd3r 62 20 by by IN cord-001734-bbeznd3r 62 21 ESI ESI NNP cord-001734-bbeznd3r 62 22 - - HYPH cord-001734-bbeznd3r 62 23 MS MS NNP cord-001734-bbeznd3r 62 24 and and CC cord-001734-bbeznd3r 62 25 Voyager Voyager NNP cord-001734-bbeznd3r 62 26 STR STR NNP cord-001734-bbeznd3r 62 27 matrix matrix NN cord-001734-bbeznd3r 62 28 - - HYPH cord-001734-bbeznd3r 62 29 assisted assist VBN cord-001734-bbeznd3r 62 30 laser laser NN cord-001734-bbeznd3r 62 31 desorption desorption NN cord-001734-bbeznd3r 62 32 ionization ionization NN cord-001734-bbeznd3r 62 33 time time NN cord-001734-bbeznd3r 62 34 - - HYPH cord-001734-bbeznd3r 62 35 of of IN cord-001734-bbeznd3r 62 36 - - HYPH cord-001734-bbeznd3r 62 37 flight flight NN cord-001734-bbeznd3r 62 38 - - HYPH cord-001734-bbeznd3r 62 39 mass mass NN cord-001734-bbeznd3r 62 40 spectrometer spectrometer NN cord-001734-bbeznd3r 62 41 ( ( -LRB- cord-001734-bbeznd3r 62 42 Applied Applied NNP cord-001734-bbeznd3r 62 43 Biosystems Biosystems NNP cord-001734-bbeznd3r 62 44 ) ) -RRB- cord-001734-bbeznd3r 62 45 . . . cord-001734-bbeznd3r 63 1 The the DT cord-001734-bbeznd3r 63 2 concentration concentration NN cord-001734-bbeznd3r 63 3 of of IN cord-001734-bbeznd3r 63 4 protein protein NN cord-001734-bbeznd3r 63 5 samples sample NNS cord-001734-bbeznd3r 63 6 was be VBD cord-001734-bbeznd3r 63 7 determined determine VBN cord-001734-bbeznd3r 63 8 by by IN cord-001734-bbeznd3r 63 9 the the DT cord-001734-bbeznd3r 63 10 UV uv NN cord-001734-bbeznd3r 63 11 spectroscopic spectroscopic JJ cord-001734-bbeznd3r 63 12 method method NN cord-001734-bbeznd3r 63 13 in in IN cord-001734-bbeznd3r 63 14 the the DT cord-001734-bbeznd3r 63 15 presence presence NN cord-001734-bbeznd3r 63 16 of of IN cord-001734-bbeznd3r 63 17 8 8 CD cord-001734-bbeznd3r 63 18 M m NN cord-001734-bbeznd3r 63 19 urea urea NN cord-001734-bbeznd3r 63 20 [ [ -LRB- cord-001734-bbeznd3r 63 21 23 23 CD cord-001734-bbeznd3r 63 22 ] ] -RRB- cord-001734-bbeznd3r 63 23 . . . cord-001734-bbeznd3r 64 1 was be VBD cord-001734-bbeznd3r 64 2 measured measure VBN cord-001734-bbeznd3r 64 3 in in IN cord-001734-bbeznd3r 64 4 the the DT cord-001734-bbeznd3r 64 5 assay assay NN cord-001734-bbeznd3r 64 6 buffer buffer NN cord-001734-bbeznd3r 64 7 containing contain VBG cord-001734-bbeznd3r 64 8 50 50 CD cord-001734-bbeznd3r 64 9 mM mm CD cord-001734-bbeznd3r 64 10 Tris Tris NNP cord-001734-bbeznd3r 64 11 - - HYPH cord-001734-bbeznd3r 64 12 HCl HCl NNP cord-001734-bbeznd3r 64 13 ( ( -LRB- cord-001734-bbeznd3r 64 14 pH pH NNP cord-001734-bbeznd3r 64 15 7.5 7.5 CD cord-001734-bbeznd3r 64 16 ) ) -RRB- cord-001734-bbeznd3r 64 17 , , , cord-001734-bbeznd3r 64 18 0.001 0.001 CD cord-001734-bbeznd3r 64 19 % % NN cord-001734-bbeznd3r 64 20 Triton Triton NNP cord-001734-bbeznd3r 64 21 X-100 x-100 NN cord-001734-bbeznd3r 64 22 , , , cord-001734-bbeznd3r 64 23 0.5 0.5 CD cord-001734-bbeznd3r 64 24 mM mm CD cord-001734-bbeznd3r 64 25 EGTA EGTA NNP cord-001734-bbeznd3r 64 26 , , , cord-001734-bbeznd3r 64 27 or or CC cord-001734-bbeznd3r 64 28 100 100 CD cord-001734-bbeznd3r 64 29 mM mm CD cord-001734-bbeznd3r 64 30 sodium sodium NN cord-001734-bbeznd3r 64 31 acetate acetate NN cord-001734-bbeznd3r 64 32 ( ( -LRB- cord-001734-bbeznd3r 64 33 pH pH NNP cord-001734-bbeznd3r 64 34 4.0 4.0 CD cord-001734-bbeznd3r 64 35 ) ) -RRB- cord-001734-bbeznd3r 64 36 , , , cord-001734-bbeznd3r 64 37 0.001 0.001 CD cord-001734-bbeznd3r 64 38 % % NN cord-001734-bbeznd3r 64 39 Triton Triton NNP cord-001734-bbeznd3r 64 40 X-100 x-100 NN cord-001734-bbeznd3r 64 41 , , , cord-001734-bbeznd3r 64 42 0.5 0.5 CD cord-001734-bbeznd3r 64 43 mM mm CD cord-001734-bbeznd3r 64 44 EGTA EGTA NNP cord-001734-bbeznd3r 64 45 . . . cord-001734-bbeznd3r 65 1 Briefly briefly RB cord-001734-bbeznd3r 65 2 , , , cord-001734-bbeznd3r 65 3 in in IN cord-001734-bbeznd3r 65 4 the the DT cord-001734-bbeznd3r 65 5 100 100 CD cord-001734-bbeznd3r 65 6 μl μl IN cord-001734-bbeznd3r 65 7 reaction reaction NN cord-001734-bbeznd3r 65 8 mixtures mixture NNS cord-001734-bbeznd3r 65 9 containing contain VBG cord-001734-bbeznd3r 65 10 0.3 0.3 CD cord-001734-bbeznd3r 65 11 μM μm CD cord-001734-bbeznd3r 65 12 protease protease NN cord-001734-bbeznd3r 65 13 , , , cord-001734-bbeznd3r 65 14 20 20 CD cord-001734-bbeznd3r 65 15 μM μm CD cord-001734-bbeznd3r 65 16 protease protease NN cord-001734-bbeznd3r 65 17 specific specific JJ cord-001734-bbeznd3r 65 18 fluorophore fluorophore RB cord-001734-bbeznd3r 65 19 - - HYPH cord-001734-bbeznd3r 65 20 tagged tag VBN cord-001734-bbeznd3r 65 21 substrate substrate NN cord-001734-bbeznd3r 65 22 benzoyl benzoyl NN cord-001734-bbeznd3r 65 23 - - HYPH cord-001734-bbeznd3r 65 24 Nle Nle NNP cord-001734-bbeznd3r 65 25 - - HYPH cord-001734-bbeznd3r 65 26 Lys Lys NNP cord-001734-bbeznd3r 65 27 - - HYPH cord-001734-bbeznd3r 65 28 Arg arg NN cord-001734-bbeznd3r 65 29 - - HYPH cord-001734-bbeznd3r 65 30 Arg arg NN cord-001734-bbeznd3r 65 31 - - HYPH cord-001734-bbeznd3r 65 32 aminomethylcoumarin aminomethylcoumarin NNP cord-001734-bbeznd3r 66 1 ( ( -LRB- cord-001734-bbeznd3r 66 2 Bz bz NN cord-001734-bbeznd3r 66 3 - - HYPH cord-001734-bbeznd3r 66 4 nKRR nKRR NNP cord-001734-bbeznd3r 66 5 - - HYPH cord-001734-bbeznd3r 66 6 AMC AMC NNP cord-001734-bbeznd3r 66 7 ) ) -RRB- cord-001734-bbeznd3r 66 8 was be VBD cord-001734-bbeznd3r 66 9 added add VBN cord-001734-bbeznd3r 66 10 and and CC cord-001734-bbeznd3r 66 11 reaction reaction NN cord-001734-bbeznd3r 66 12 mixtures mixture NNS cord-001734-bbeznd3r 66 13 were be VBD cord-001734-bbeznd3r 66 14 incubated incubate VBN cord-001734-bbeznd3r 66 15 at at IN cord-001734-bbeznd3r 66 16 37 37 CD cord-001734-bbeznd3r 66 17 ° ° NN cord-001734-bbeznd3r 66 18 C c NN cord-001734-bbeznd3r 66 19 , , , cord-001734-bbeznd3r 66 20 and and CC cord-001734-bbeznd3r 66 21 the the DT cord-001734-bbeznd3r 66 22 liberated liberated JJ cord-001734-bbeznd3r 66 23 coumarin coumarin NN cord-001734-bbeznd3r 66 24 fluorophore fluorophore NN cord-001734-bbeznd3r 66 25 was be VBD cord-001734-bbeznd3r 66 26 continuously continuously RB cord-001734-bbeznd3r 66 27 monitored monitor VBN cord-001734-bbeznd3r 66 28 at at IN cord-001734-bbeznd3r 66 29 λ λ NNP cord-001734-bbeznd3r 66 30 ex ex NNP cord-001734-bbeznd3r 66 31 of of IN cord-001734-bbeznd3r 66 32 380 380 CD cord-001734-bbeznd3r 66 33 nm nm NN cord-001734-bbeznd3r 66 34 and and CC cord-001734-bbeznd3r 66 35 λ λ NNP cord-001734-bbeznd3r 66 36 em -PRON- NN cord-001734-bbeznd3r 66 37 of of IN cord-001734-bbeznd3r 66 38 450 450 CD cord-001734-bbeznd3r 66 39 nm nm NN cord-001734-bbeznd3r 66 40 on on IN cord-001734-bbeznd3r 66 41 Infinite Infinite NNP cord-001734-bbeznd3r 66 42 M200 M200 NNP cord-001734-bbeznd3r 66 43 PRO pro JJ cord-001734-bbeznd3r 66 44 Tecan Tecan NNP cord-001734-bbeznd3r 66 45 microplate microplate NN cord-001734-bbeznd3r 66 46 reader reader NN cord-001734-bbeznd3r 66 47 . . . cord-001734-bbeznd3r 67 1 For for IN cord-001734-bbeznd3r 67 2 steady steady JJ cord-001734-bbeznd3r 67 3 state state NN cord-001734-bbeznd3r 67 4 kinetics kinetic NNS cord-001734-bbeznd3r 67 5 , , , cord-001734-bbeznd3r 67 6 0.3 0.3 CD cord-001734-bbeznd3r 67 7 μM μm CD cord-001734-bbeznd3r 67 8 refolded refolde VBN cord-001734-bbeznd3r 67 9 NS3-NS2B NS3-NS2B NNP cord-001734-bbeznd3r 67 10 protease protease NN cord-001734-bbeznd3r 67 11 was be VBD cord-001734-bbeznd3r 67 12 incubated incubate VBN cord-001734-bbeznd3r 67 13 with with IN cord-001734-bbeznd3r 67 14 various various JJ cord-001734-bbeznd3r 67 15 concentrations concentration NNS cord-001734-bbeznd3r 67 16 of of IN cord-001734-bbeznd3r 67 17 Bz bz JJ cord-001734-bbeznd3r 67 18 - - HYPH cord-001734-bbeznd3r 67 19 nKRR nkrr JJ cord-001734-bbeznd3r 67 20 - - HYPH cord-001734-bbeznd3r 67 21 AMC AMC NNP cord-001734-bbeznd3r 67 22 substrate substrate NN cord-001734-bbeznd3r 67 23 in in IN cord-001734-bbeznd3r 67 24 assay assay NN cord-001734-bbeznd3r 67 25 buffer buffer NN cord-001734-bbeznd3r 67 26 containing contain VBG cord-001734-bbeznd3r 67 27 50 50 CD cord-001734-bbeznd3r 67 28 mM mm CD cord-001734-bbeznd3r 67 29 Tris Tris NNP cord-001734-bbeznd3r 67 30 - - HYPH cord-001734-bbeznd3r 67 31 HCl HCl NNP cord-001734-bbeznd3r 67 32 ( ( -LRB- cord-001734-bbeznd3r 67 33 pH pH NNP cord-001734-bbeznd3r 67 34 7.5 7.5 CD cord-001734-bbeznd3r 67 35 ) ) -RRB- cord-001734-bbeznd3r 67 36 , , , cord-001734-bbeznd3r 67 37 0.001 0.001 CD cord-001734-bbeznd3r 67 38 % % NN cord-001734-bbeznd3r 67 39 Triton Triton NNP cord-001734-bbeznd3r 67 40 X-100 x-100 NN cord-001734-bbeznd3r 67 41 , , , cord-001734-bbeznd3r 67 42 0.5 0.5 CD cord-001734-bbeznd3r 67 43 mM mm CD cord-001734-bbeznd3r 67 44 EGTA EGTA NNP cord-001734-bbeznd3r 67 45 at at IN cord-001734-bbeznd3r 67 46 37 37 CD cord-001734-bbeznd3r 67 47 ° ° NN cord-001734-bbeznd3r 67 48 C c NN cord-001734-bbeznd3r 67 49 . . . cord-001734-bbeznd3r 68 1 Progression progression NN cord-001734-bbeznd3r 68 2 of of IN cord-001734-bbeznd3r 68 3 enzymatic enzymatic JJ cord-001734-bbeznd3r 68 4 reaction reaction NN cord-001734-bbeznd3r 68 5 was be VBD cord-001734-bbeznd3r 68 6 monitored monitor VBN cord-001734-bbeznd3r 68 7 as as IN cord-001734-bbeznd3r 68 8 an an DT cord-001734-bbeznd3r 68 9 increase increase NN cord-001734-bbeznd3r 68 10 in in IN cord-001734-bbeznd3r 68 11 fluorescence fluorescence NN cord-001734-bbeznd3r 68 12 at at IN cord-001734-bbeznd3r 68 13 λ λ NNP cord-001734-bbeznd3r 68 14 ex ex NN cord-001734-bbeznd3r 68 15 of of IN cord-001734-bbeznd3r 68 16 380 380 CD cord-001734-bbeznd3r 68 17 nm nm NN cord-001734-bbeznd3r 68 18 and and CC cord-001734-bbeznd3r 68 19 λ λ NNP cord-001734-bbeznd3r 68 20 em -PRON- NN cord-001734-bbeznd3r 68 21 of of IN cord-001734-bbeznd3r 68 22 450 450 CD cord-001734-bbeznd3r 68 23 nm nm NN cord-001734-bbeznd3r 68 24 . . . cord-001734-bbeznd3r 69 1 Initial initial JJ cord-001734-bbeznd3r 69 2 fluorescence fluorescence NN cord-001734-bbeznd3r 69 3 velocities velocity NNS cord-001734-bbeznd3r 69 4 ( ( -LRB- cord-001734-bbeznd3r 69 5 relative relative JJ cord-001734-bbeznd3r 69 6 fluorescence fluorescence NN cord-001734-bbeznd3r 69 7 units unit NNS cord-001734-bbeznd3r 69 8 / / SYM cord-001734-bbeznd3r 69 9 sec sec NNP cord-001734-bbeznd3r 69 10 ) ) -RRB- cord-001734-bbeznd3r 69 11 were be VBD cord-001734-bbeznd3r 69 12 calculated calculate VBN cord-001734-bbeznd3r 69 13 and and CC cord-001734-bbeznd3r 69 14 curves curve NNS cord-001734-bbeznd3r 69 15 were be VBD cord-001734-bbeznd3r 69 16 fitted fit VBN cord-001734-bbeznd3r 69 17 to to IN cord-001734-bbeznd3r 69 18 the the DT cord-001734-bbeznd3r 69 19 Michaelis Michaelis NNP cord-001734-bbeznd3r 69 20 - - HYPH cord-001734-bbeznd3r 69 21 Menten Menten NNP cord-001734-bbeznd3r 69 22 equation equation NN cord-001734-bbeznd3r 69 23 by by IN cord-001734-bbeznd3r 69 24 nonlinear nonlinear JJ cord-001734-bbeznd3r 69 25 regression regression NN cord-001734-bbeznd3r 69 26 using use VBG cord-001734-bbeznd3r 69 27 Graph Graph NNP cord-001734-bbeznd3r 69 28 - - HYPH cord-001734-bbeznd3r 69 29 Pad Pad NNP cord-001734-bbeznd3r 69 30 Prism Prism NNP cord-001734-bbeznd3r 69 31 . . . cord-001734-bbeznd3r 70 1 Steady steady JJ cord-001734-bbeznd3r 70 2 - - HYPH cord-001734-bbeznd3r 70 3 state state NN cord-001734-bbeznd3r 70 4 kinetic kinetic JJ cord-001734-bbeznd3r 70 5 constants constant NNS cord-001734-bbeznd3r 70 6 were be VBD cord-001734-bbeznd3r 70 7 determined determine VBN cord-001734-bbeznd3r 70 8 from from IN cord-001734-bbeznd3r 70 9 triplicate triplicate JJ cord-001734-bbeznd3r 70 10 measurements measurement NNS cord-001734-bbeznd3r 70 11 and and CC cord-001734-bbeznd3r 70 12 reported report VBD cord-001734-bbeznd3r 70 13 as as IN cord-001734-bbeznd3r 70 14 mean mean JJ cord-001734-bbeznd3r 70 15 Standard Standard NNP cord-001734-bbeznd3r 70 16 Error Error NNP cord-001734-bbeznd3r 70 17 . . . cord-001734-bbeznd3r 71 1 As as IN cord-001734-bbeznd3r 71 2 the the DT cord-001734-bbeznd3r 71 3 NS3pro NS3pro NNP cord-001734-bbeznd3r 71 4 contains contain VBZ cord-001734-bbeznd3r 71 5 no no DT cord-001734-bbeznd3r 71 6 free free JJ cord-001734-bbeznd3r 71 7 Cys Cys NNP cord-001734-bbeznd3r 71 8 residue residue NN cord-001734-bbeznd3r 71 9 , , , cord-001734-bbeznd3r 71 10 three three CD cord-001734-bbeznd3r 71 11 single single JJ cord-001734-bbeznd3r 71 12 - - HYPH cord-001734-bbeznd3r 71 13 Cys Cys NNP cord-001734-bbeznd3r 71 14 mutants mutant NNS cord-001734-bbeznd3r 71 15 were be VBD cord-001734-bbeznd3r 71 16 prepared prepare VBN cord-001734-bbeznd3r 71 17 : : : cord-001734-bbeznd3r 71 18 Q27C Q27C NNP cord-001734-bbeznd3r 71 19 , , , cord-001734-bbeznd3r 71 20 E86C e86c NN cord-001734-bbeznd3r 71 21 , , , cord-001734-bbeznd3r 71 22 S158C S158C NNP cord-001734-bbeznd3r 71 23 by by IN cord-001734-bbeznd3r 71 24 use use NN cord-001734-bbeznd3r 71 25 of of IN cord-001734-bbeznd3r 71 26 the the DT cord-001734-bbeznd3r 71 27 QuikChange QuikChange NNP cord-001734-bbeznd3r 71 28 Site Site NNP cord-001734-bbeznd3r 71 29 - - : cord-001734-bbeznd3r 71 30 Directed Directed NNP cord-001734-bbeznd3r 71 31 Mutagenesis Mutagenesis NNP cord-001734-bbeznd3r 71 32 Kit kit NN cord-001734-bbeznd3r 71 33 ( ( -LRB- cord-001734-bbeznd3r 71 34 Stratagene Stratagene NNP cord-001734-bbeznd3r 71 35 , , , cord-001734-bbeznd3r 71 36 La La NNP cord-001734-bbeznd3r 71 37 Jolla Jolla NNP cord-001734-bbeznd3r 71 38 , , , cord-001734-bbeznd3r 71 39 CA CA NNP cord-001734-bbeznd3r 71 40 , , , cord-001734-bbeznd3r 71 41 USA USA NNP cord-001734-bbeznd3r 71 42 ) ) -RRB- cord-001734-bbeznd3r 71 43 as as IN cord-001734-bbeznd3r 71 44 previously previously RB cord-001734-bbeznd3r 71 45 described describe VBN cord-001734-bbeznd3r 71 46 [ [ -LRB- cord-001734-bbeznd3r 71 47 18 18 CD cord-001734-bbeznd3r 71 48 ] ] -RRB- cord-001734-bbeznd3r 71 49 . . . cord-001734-bbeznd3r 72 1 The the DT cord-001734-bbeznd3r 72 2 mutated mutated JJ cord-001734-bbeznd3r 72 3 plasmids plasmid NNS cord-001734-bbeznd3r 72 4 were be VBD cord-001734-bbeznd3r 72 5 confirmed confirm VBN cord-001734-bbeznd3r 72 6 by by IN cord-001734-bbeznd3r 72 7 DNA dna NN cord-001734-bbeznd3r 72 8 sequencing sequencing NN cord-001734-bbeznd3r 72 9 and and CC cord-001734-bbeznd3r 72 10 their -PRON- PRP$ cord-001734-bbeznd3r 72 11 recombinant recombinant JJ cord-001734-bbeznd3r 72 12 proteins protein NNS cord-001734-bbeznd3r 72 13 were be VBD cord-001734-bbeznd3r 72 14 subsequently subsequently RB cord-001734-bbeznd3r 72 15 expressed express VBN cord-001734-bbeznd3r 72 16 and and CC cord-001734-bbeznd3r 72 17 purified purify VBN cord-001734-bbeznd3r 72 18 by by IN cord-001734-bbeznd3r 72 19 the the DT cord-001734-bbeznd3r 72 20 same same JJ cord-001734-bbeznd3r 72 21 procedures procedure NNS cord-001734-bbeznd3r 72 22 described describe VBN cord-001734-bbeznd3r 72 23 above above RB cord-001734-bbeznd3r 72 24 . . . cord-001734-bbeznd3r 73 1 1 1 LS cord-001734-bbeznd3r 74 1 H-15 H-15 NNP cord-001734-bbeznd3r 74 2 N n CD cord-001734-bbeznd3r 74 3 heteronuclear heteronuclear NN cord-001734-bbeznd3r 74 4 single single JJ cord-001734-bbeznd3r 74 5 quantum quantum NN cord-001734-bbeznd3r 74 6 coherence coherence NN cord-001734-bbeznd3r 74 7 spectroscopy spectroscopy NN cord-001734-bbeznd3r 74 8 ( ( -LRB- cord-001734-bbeznd3r 74 9 HSQC HSQC NNP cord-001734-bbeznd3r 74 10 ) ) -RRB- cord-001734-bbeznd3r 74 11 experiments experiment NNS cord-001734-bbeznd3r 74 12 were be VBD cord-001734-bbeznd3r 74 13 performed perform VBN cord-001734-bbeznd3r 74 14 on on IN cord-001734-bbeznd3r 74 15 each each DT cord-001734-bbeznd3r 74 16 mutant mutant JJ cord-001734-bbeznd3r 74 17 to to TO cord-001734-bbeznd3r 74 18 validate validate VB cord-001734-bbeznd3r 74 19 that that IN cord-001734-bbeznd3r 74 20 these these DT cord-001734-bbeznd3r 74 21 mutations mutation NNS cord-001734-bbeznd3r 74 22 did do VBD cord-001734-bbeznd3r 74 23 not not RB cord-001734-bbeznd3r 74 24 significantly significantly RB cord-001734-bbeznd3r 74 25 perturb perturb VB cord-001734-bbeznd3r 74 26 the the DT cord-001734-bbeznd3r 74 27 conformation conformation NN cord-001734-bbeznd3r 74 28 of of IN cord-001734-bbeznd3r 74 29 the the DT cord-001734-bbeznd3r 74 30 native native JJ cord-001734-bbeznd3r 74 31 NS3pro ns3pro NN cord-001734-bbeznd3r 74 32 sequence sequence NN cord-001734-bbeznd3r 74 33 . . . cord-001734-bbeznd3r 75 1 The the DT cord-001734-bbeznd3r 75 2 recombinant recombinant JJ cord-001734-bbeznd3r 75 3 proteins protein NNS cord-001734-bbeznd3r 75 4 of of IN cord-001734-bbeznd3r 75 5 three three CD cord-001734-bbeznd3r 75 6 single single JJ cord-001734-bbeznd3r 75 7 - - HYPH cord-001734-bbeznd3r 75 8 cysteine cysteine NN cord-001734-bbeznd3r 75 9 mutants mutant NNS cord-001734-bbeznd3r 75 10 were be VBD cord-001734-bbeznd3r 75 11 Cys Cys NNP cord-001734-bbeznd3r 75 12 - - HYPH cord-001734-bbeznd3r 75 13 modified modify VBN cord-001734-bbeznd3r 75 14 following follow VBG cord-001734-bbeznd3r 75 15 the the DT cord-001734-bbeznd3r 75 16 previous previous JJ cord-001734-bbeznd3r 75 17 procedure procedure NN cord-001734-bbeznd3r 75 18 [ [ -LRB- cord-001734-bbeznd3r 75 19 18 18 CD cord-001734-bbeznd3r 75 20 ] ] -RRB- cord-001734-bbeznd3r 75 21 , , , cord-001734-bbeznd3r 75 22 by by IN cord-001734-bbeznd3r 75 23 the the DT cord-001734-bbeznd3r 75 24 thiol thiol NN cord-001734-bbeznd3r 75 25 - - HYPH cord-001734-bbeznd3r 75 26 reactive reactive JJ cord-001734-bbeznd3r 75 27 nitroxide nitroxide NN cord-001734-bbeznd3r 75 28 free free JJ cord-001734-bbeznd3r 75 29 radical radical JJ cord-001734-bbeznd3r 75 30 probe probe NN cord-001734-bbeznd3r 75 31 , , , cord-001734-bbeznd3r 75 32 MTSSL MTSSL NNP cord-001734-bbeznd3r 75 33 ( ( -LRB- cord-001734-bbeznd3r 75 34 1-oxyl-2,2,5,5-tetramethyl 1-oxyl-2,2,5,5-tetramethyl NNP cord-001734-bbeznd3r 75 35 - - : cord-001734-bbeznd3r 75 36 Δ3-pyrroline-3-methyl Δ3-pyrroline-3-methyl NNP cord-001734-bbeznd3r 75 37 ) ) -RRB- cord-001734-bbeznd3r 75 38 methanethiosulfonate methanethiosulfonate NNP cord-001734-bbeznd3r 75 39 ( ( -LRB- cord-001734-bbeznd3r 75 40 Toronto Toronto NNP cord-001734-bbeznd3r 75 41 Research Research NNP cord-001734-bbeznd3r 75 42 Chemicals Chemicals NNP cord-001734-bbeznd3r 75 43 Inc. Inc. NNP cord-001734-bbeznd3r 75 44 ) ) -RRB- cord-001734-bbeznd3r 75 45 . . . cord-001734-bbeznd3r 76 1 Briefly briefly RB cord-001734-bbeznd3r 76 2 , , , cord-001734-bbeznd3r 76 3 the the DT cord-001734-bbeznd3r 76 4 HPLC HPLC NNP cord-001734-bbeznd3r 76 5 - - HYPH cord-001734-bbeznd3r 76 6 purified purify VBN cord-001734-bbeznd3r 76 7 recombinant recombinant JJ cord-001734-bbeznd3r 76 8 protein protein NN cord-001734-bbeznd3r 76 9 of of IN cord-001734-bbeznd3r 76 10 the the DT cord-001734-bbeznd3r 76 11 each each DT cord-001734-bbeznd3r 76 12 mutant mutant NN cord-001734-bbeznd3r 76 13 was be VBD cord-001734-bbeznd3r 76 14 dissolved dissolve VBN cord-001734-bbeznd3r 76 15 in in IN cord-001734-bbeznd3r 76 16 the the DT cord-001734-bbeznd3r 76 17 buffer buffer NN cord-001734-bbeznd3r 76 18 containing contain VBG cord-001734-bbeznd3r 76 19 8 8 CD cord-001734-bbeznd3r 76 20 M M NNP cord-001734-bbeznd3r 76 21 urea urea NN cord-001734-bbeznd3r 76 22 , , , cord-001734-bbeznd3r 76 23 20 20 CD cord-001734-bbeznd3r 76 24 mM mm NN cord-001734-bbeznd3r 76 25 phosphate phosphate NN cord-001734-bbeznd3r 76 26 ( ( -LRB- cord-001734-bbeznd3r 76 27 pH pH NNP cord-001734-bbeznd3r 76 28 8.0 8.0 CD cord-001734-bbeznd3r 76 29 ) ) -RRB- cord-001734-bbeznd3r 76 30 , , , cord-001734-bbeznd3r 76 31 which which WDT cord-001734-bbeznd3r 76 32 was be VBD cord-001734-bbeznd3r 76 33 pre pre JJ cord-001734-bbeznd3r 76 34 - - JJ cord-001734-bbeznd3r 76 35 degassed degas VBN cord-001734-bbeznd3r 76 36 with with IN cord-001734-bbeznd3r 76 37 nitrogen nitrogen NN cord-001734-bbeznd3r 76 38 gas gas NN cord-001734-bbeznd3r 76 39 for for IN cord-001734-bbeznd3r 76 40 20 20 CD cord-001734-bbeznd3r 76 41 minutes minute NNS cord-001734-bbeznd3r 76 42 . . . cord-001734-bbeznd3r 77 1 Subsequently subsequently RB cord-001734-bbeznd3r 77 2 , , , cord-001734-bbeznd3r 77 3 the the DT cord-001734-bbeznd3r 77 4 MTSSL MTSSL NNP cord-001734-bbeznd3r 77 5 reagent reagent NN cord-001734-bbeznd3r 77 6 was be VBD cord-001734-bbeznd3r 77 7 added add VBN cord-001734-bbeznd3r 77 8 from from IN cord-001734-bbeznd3r 77 9 3.8 3.8 CD cord-001734-bbeznd3r 77 10 mM mm CD cord-001734-bbeznd3r 77 11 stock stock NN cord-001734-bbeznd3r 77 12 solution solution NN cord-001734-bbeznd3r 77 13 in in IN cord-001734-bbeznd3r 77 14 acetonitrile acetonitrile NN cord-001734-bbeznd3r 77 15 to to TO cord-001734-bbeznd3r 77 16 reach reach VB cord-001734-bbeznd3r 77 17 a a DT cord-001734-bbeznd3r 77 18 six six CD cord-001734-bbeznd3r 77 19 - - HYPH cord-001734-bbeznd3r 77 20 fold fold JJ cord-001734-bbeznd3r 77 21 molar molar JJ cord-001734-bbeznd3r 77 22 concentration concentration NN cord-001734-bbeznd3r 77 23 of of IN cord-001734-bbeznd3r 77 24 the the DT cord-001734-bbeznd3r 77 25 protein protein NN cord-001734-bbeznd3r 77 26 , , , cord-001734-bbeznd3r 77 27 followed follow VBN cord-001734-bbeznd3r 77 28 by by IN cord-001734-bbeznd3r 77 29 incubation incubation NN cord-001734-bbeznd3r 77 30 at at IN cord-001734-bbeznd3r 77 31 room room NN cord-001734-bbeznd3r 77 32 temperature temperature NN cord-001734-bbeznd3r 77 33 with with IN cord-001734-bbeznd3r 77 34 constant constant JJ cord-001734-bbeznd3r 77 35 stirring stirring NN cord-001734-bbeznd3r 77 36 for for IN cord-001734-bbeznd3r 77 37 5 5 CD cord-001734-bbeznd3r 77 38 hours hour NNS cord-001734-bbeznd3r 77 39 . . . cord-001734-bbeznd3r 78 1 To to TO cord-001734-bbeznd3r 78 2 ensure ensure VB cord-001734-bbeznd3r 78 3 a a DT cord-001734-bbeznd3r 78 4 complete complete JJ cord-001734-bbeznd3r 78 5 labeling labeling NN cord-001734-bbeznd3r 78 6 , , , cord-001734-bbeznd3r 78 7 another another DT cord-001734-bbeznd3r 78 8 dose dose NN cord-001734-bbeznd3r 78 9 of of IN cord-001734-bbeznd3r 78 10 MTSSL MTSSL NNP cord-001734-bbeznd3r 78 11 was be VBD cord-001734-bbeznd3r 78 12 added add VBN cord-001734-bbeznd3r 78 13 to to IN cord-001734-bbeznd3r 78 14 a a DT cord-001734-bbeznd3r 78 15 six six CD cord-001734-bbeznd3r 78 16 - - HYPH cord-001734-bbeznd3r 78 17 fold fold JJ cord-001734-bbeznd3r 78 18 molar molar JJ cord-001734-bbeznd3r 78 19 concentration concentration NN cord-001734-bbeznd3r 78 20 of of IN cord-001734-bbeznd3r 78 21 the the DT cord-001734-bbeznd3r 78 22 protein protein NN cord-001734-bbeznd3r 78 23 for for IN cord-001734-bbeznd3r 78 24 an an DT cord-001734-bbeznd3r 78 25 overnight overnight JJ cord-001734-bbeznd3r 78 26 incubation incubation NN cord-001734-bbeznd3r 78 27 . . . cord-001734-bbeznd3r 79 1 The the DT cord-001734-bbeznd3r 79 2 MTSSL MTSSL NNP cord-001734-bbeznd3r 79 3 - - HYPH cord-001734-bbeznd3r 79 4 labeled label VBN cord-001734-bbeznd3r 79 5 protein protein NN cord-001734-bbeznd3r 79 6 was be VBD cord-001734-bbeznd3r 79 7 purified purify VBN cord-001734-bbeznd3r 79 8 by by IN cord-001734-bbeznd3r 79 9 reverse reverse JJ cord-001734-bbeznd3r 79 10 - - HYPH cord-001734-bbeznd3r 79 11 phase phase NN cord-001734-bbeznd3r 79 12 HPLC HPLC NNP cord-001734-bbeznd3r 79 13 on on IN cord-001734-bbeznd3r 79 14 a a DT cord-001734-bbeznd3r 79 15 C8 c8 NN cord-001734-bbeznd3r 79 16 column column NN cord-001734-bbeznd3r 79 17 and and CC cord-001734-bbeznd3r 79 18 lyophilized lyophilize VBD cord-001734-bbeznd3r 79 19 . . . cord-001734-bbeznd3r 80 1 Based base VBN cord-001734-bbeznd3r 80 2 on on IN cord-001734-bbeznd3r 80 3 the the DT cord-001734-bbeznd3r 80 4 verification verification NN cord-001734-bbeznd3r 80 5 by by IN cord-001734-bbeznd3r 80 6 the the DT cord-001734-bbeznd3r 80 7 time time NN cord-001734-bbeznd3r 80 8 - - HYPH cord-001734-bbeznd3r 80 9 of of IN cord-001734-bbeznd3r 80 10 - - HYPH cord-001734-bbeznd3r 80 11 flight flight NN cord-001734-bbeznd3r 80 12 - - HYPH cord-001734-bbeznd3r 80 13 mass mass NN cord-001734-bbeznd3r 80 14 spectrometer spectrometer NN cord-001734-bbeznd3r 80 15 , , , cord-001734-bbeznd3r 80 16 the the DT cord-001734-bbeznd3r 80 17 purity purity NN cord-001734-bbeznd3r 80 18 of of IN cord-001734-bbeznd3r 80 19 the the DT cord-001734-bbeznd3r 80 20 MTSSL MTSSL NNP cord-001734-bbeznd3r 80 21 - - HYPH cord-001734-bbeznd3r 80 22 modified modify VBN cord-001734-bbeznd3r 80 23 proteins protein NNS cord-001734-bbeznd3r 80 24 of of IN cord-001734-bbeznd3r 80 25 all all DT cord-001734-bbeznd3r 80 26 mutants mutant NNS cord-001734-bbeznd3r 80 27 was be VBD cord-001734-bbeznd3r 80 28 > > NFP cord-001734-bbeznd3r 80 29 99 99 CD cord-001734-bbeznd3r 80 30 % % NN cord-001734-bbeznd3r 80 31 after after IN cord-001734-bbeznd3r 80 32 the the DT cord-001734-bbeznd3r 80 33 HPLC HPLC NNP cord-001734-bbeznd3r 80 34 purification purification NN cord-001734-bbeznd3r 80 35 . . . cord-001734-bbeznd3r 81 1 All all DT cord-001734-bbeznd3r 81 2 circular circular JJ cord-001734-bbeznd3r 81 3 dichroism dichroism NN cord-001734-bbeznd3r 81 4 ( ( -LRB- cord-001734-bbeznd3r 81 5 CD cd NN cord-001734-bbeznd3r 81 6 ) ) -RRB- cord-001734-bbeznd3r 81 7 experiments experiment NNS cord-001734-bbeznd3r 81 8 were be VBD cord-001734-bbeznd3r 81 9 performed perform VBN cord-001734-bbeznd3r 81 10 on on IN cord-001734-bbeznd3r 81 11 a a DT cord-001734-bbeznd3r 81 12 Jasco Jasco NNP cord-001734-bbeznd3r 81 13 J-810 j-810 XX cord-001734-bbeznd3r 82 1 spectropolarimeter spectropolarimeter NNP cord-001734-bbeznd3r 82 2 equipped equip VBN cord-001734-bbeznd3r 82 3 with with IN cord-001734-bbeznd3r 82 4 a a DT cord-001734-bbeznd3r 82 5 thermal thermal JJ cord-001734-bbeznd3r 82 6 controller controller NN cord-001734-bbeznd3r 82 7 using use VBG cord-001734-bbeznd3r 82 8 1-mm 1-mm CD cord-001734-bbeznd3r 82 9 path path NN cord-001734-bbeznd3r 82 10 length length NN cord-001734-bbeznd3r 82 11 cuvettes cuvette NNS cord-001734-bbeznd3r 82 12 . . . cord-001734-bbeznd3r 83 1 Data datum NNS cord-001734-bbeznd3r 83 2 from from IN cord-001734-bbeznd3r 83 3 five five CD cord-001734-bbeznd3r 83 4 independent independent JJ cord-001734-bbeznd3r 83 5 scans scan NNS cord-001734-bbeznd3r 83 6 were be VBD cord-001734-bbeznd3r 83 7 added add VBN cord-001734-bbeznd3r 83 8 and and CC cord-001734-bbeznd3r 83 9 averaged average VBD cord-001734-bbeznd3r 83 10 [ [ -LRB- cord-001734-bbeznd3r 83 11 18 18 CD cord-001734-bbeznd3r 83 12 ] ] -RRB- cord-001734-bbeznd3r 83 13 . . . cord-001734-bbeznd3r 84 1 The the DT cord-001734-bbeznd3r 84 2 NS2B NS2B NNP cord-001734-bbeznd3r 84 3 , , , cord-001734-bbeznd3r 84 4 NS3pro NS3pro NNP cord-001734-bbeznd3r 84 5 and and CC cord-001734-bbeznd3r 84 6 NS2B NS2B NNP cord-001734-bbeznd3r 84 7 - - HYPH cord-001734-bbeznd3r 84 8 NS3pro ns3pro NN cord-001734-bbeznd3r 84 9 samples sample NNS cord-001734-bbeznd3r 84 10 were be VBD cord-001734-bbeznd3r 84 11 prepared prepare VBN cord-001734-bbeznd3r 84 12 at at IN cord-001734-bbeznd3r 84 13 a a DT cord-001734-bbeznd3r 84 14 protein protein NN cord-001734-bbeznd3r 84 15 concentration concentration NN cord-001734-bbeznd3r 84 16 of of IN cord-001734-bbeznd3r 84 17 20 20 CD cord-001734-bbeznd3r 84 18 μM μM NNS cord-001734-bbeznd3r 84 19 in in IN cord-001734-bbeznd3r 84 20 either either DT cord-001734-bbeznd3r 84 21 Milli Milli NNP cord-001734-bbeznd3r 84 22 - - HYPH cord-001734-bbeznd3r 84 23 Q Q NNP cord-001734-bbeznd3r 84 24 water water NN cord-001734-bbeznd3r 84 25 ( ( -LRB- cord-001734-bbeznd3r 84 26 pH pH NNP cord-001734-bbeznd3r 84 27 4.0 4.0 CD cord-001734-bbeznd3r 84 28 ) ) -RRB- cord-001734-bbeznd3r 84 29 and and CC cord-001734-bbeznd3r 84 30 1 1 CD cord-001734-bbeznd3r 84 31 mM mm CD cord-001734-bbeznd3r 84 32 phosphate phosphate NN cord-001734-bbeznd3r 84 33 ( ( -LRB- cord-001734-bbeznd3r 84 34 pH pH NNP cord-001734-bbeznd3r 84 35 7.5 7.5 CD cord-001734-bbeznd3r 84 36 ) ) -RRB- cord-001734-bbeznd3r 84 37 respectively respectively RB cord-001734-bbeznd3r 84 38 . . . cord-001734-bbeznd3r 85 1 Secondary secondary JJ cord-001734-bbeznd3r 85 2 structure structure NN cord-001734-bbeznd3r 85 3 contents content NNS cord-001734-bbeznd3r 85 4 of of IN cord-001734-bbeznd3r 85 5 different different JJ cord-001734-bbeznd3r 85 6 samples sample NNS cord-001734-bbeznd3r 85 7 were be VBD cord-001734-bbeznd3r 85 8 obtained obtain VBN cord-001734-bbeznd3r 85 9 by by IN cord-001734-bbeznd3r 85 10 decovoluting decovolute VBG cord-001734-bbeznd3r 85 11 CD cd NN cord-001734-bbeznd3r 85 12 spectra spectrum NNS cord-001734-bbeznd3r 85 13 with with IN cord-001734-bbeznd3r 85 14 CONTINLL CONTINLL NNP cord-001734-bbeznd3r 85 15 program program NN cord-001734-bbeznd3r 86 1 ( ( -LRB- cord-001734-bbeznd3r 86 2 http://lamar.colostate.edu/~sreeram/ http://lamar.colostate.edu/~sreeram/ NNP cord-001734-bbeznd3r 86 3 CDPro CDPro NNP cord-001734-bbeznd3r 86 4 / / SYM cord-001734-bbeznd3r 86 5 main.html main.html NNP cord-001734-bbeznd3r 86 6 ) ) -RRB- cord-001734-bbeznd3r 86 7 . . . cord-001734-bbeznd3r 87 1 All all DT cord-001734-bbeznd3r 87 2 NMR NMR NNP cord-001734-bbeznd3r 87 3 experiments experiment NNS cord-001734-bbeznd3r 87 4 were be VBD cord-001734-bbeznd3r 87 5 acquired acquire VBN cord-001734-bbeznd3r 87 6 on on IN cord-001734-bbeznd3r 87 7 an an DT cord-001734-bbeznd3r 87 8 800 800 CD cord-001734-bbeznd3r 87 9 MHz MHz NNP cord-001734-bbeznd3r 87 10 Bruker Bruker NNP cord-001734-bbeznd3r 87 11 Avance Avance NNP cord-001734-bbeznd3r 87 12 spectrometer spectrometer NN cord-001734-bbeznd3r 87 13 equipped equip VBN cord-001734-bbeznd3r 87 14 with with IN cord-001734-bbeznd3r 87 15 pulse pulse NN cord-001734-bbeznd3r 87 16 field field NN cord-001734-bbeznd3r 87 17 gradient gradient NN cord-001734-bbeznd3r 87 18 units unit NNS cord-001734-bbeznd3r 87 19 as as IN cord-001734-bbeznd3r 87 20 described describe VBN cord-001734-bbeznd3r 87 21 previously previously RB cord-001734-bbeznd3r 87 22 [ [ -LRB- cord-001734-bbeznd3r 87 23 18 18 CD cord-001734-bbeznd3r 87 24 ] ] -RRB- cord-001734-bbeznd3r 87 25 . . . cord-001734-bbeznd3r 88 1 For for IN cord-001734-bbeznd3r 88 2 characterizing characterize VBG cord-001734-bbeznd3r 88 3 the the DT cord-001734-bbeznd3r 88 4 conformation conformation NN cord-001734-bbeznd3r 88 5 of of IN cord-001734-bbeznd3r 88 6 the the DT cord-001734-bbeznd3r 88 7 isolated isolated JJ cord-001734-bbeznd3r 88 8 NS3pro ns3pro NN cord-001734-bbeznd3r 88 9 in in IN cord-001734-bbeznd3r 88 10 water water NN cord-001734-bbeznd3r 88 11 , , , cord-001734-bbeznd3r 88 12 a a DT cord-001734-bbeznd3r 88 13 pair pair NN cord-001734-bbeznd3r 88 14 of of IN cord-001734-bbeznd3r 88 15 triple triple JJ cord-001734-bbeznd3r 88 16 - - HYPH cord-001734-bbeznd3r 88 17 resonance resonance NN cord-001734-bbeznd3r 88 18 experiments experiment NNS cord-001734-bbeznd3r 88 19 HNCACB HNCACB NNP cord-001734-bbeznd3r 88 20 , , , cord-001734-bbeznd3r 88 21 CBCA CBCA NNP cord-001734-bbeznd3r 88 22 ( ( -LRB- cord-001734-bbeznd3r 88 23 CO)NH CO)NH NNP cord-001734-bbeznd3r 88 24 as as RB cord-001734-bbeznd3r 88 25 well well RB cord-001734-bbeznd3r 88 26 as as IN cord-001734-bbeznd3r 88 27 15 15 CD cord-001734-bbeznd3r 88 28 N n CD cord-001734-bbeznd3r 88 29 - - HYPH cord-001734-bbeznd3r 88 30 edited edit VBN cord-001734-bbeznd3r 88 31 HSQC HSQC NNP cord-001734-bbeznd3r 88 32 - - HYPH cord-001734-bbeznd3r 88 33 TOCSY TOCSY NNP cord-001734-bbeznd3r 88 34 and and CC cord-001734-bbeznd3r 88 35 HSQC HSQC NNP cord-001734-bbeznd3r 88 36 - - HYPH cord-001734-bbeznd3r 88 37 NOESY NOESY NNP cord-001734-bbeznd3r 88 38 were be VBD cord-001734-bbeznd3r 88 39 collected collect VBN cord-001734-bbeznd3r 88 40 for for IN cord-001734-bbeznd3r 88 41 the the DT cord-001734-bbeznd3r 88 42 sequential sequential JJ cord-001734-bbeznd3r 88 43 assignment assignment NN cord-001734-bbeznd3r 88 44 on on IN cord-001734-bbeznd3r 88 45 a a DT cord-001734-bbeznd3r 88 46 15 15 CD cord-001734-bbeznd3r 88 47 N-/ N-/ NNP cord-001734-bbeznd3r 88 48 13 13 CD cord-001734-bbeznd3r 88 49 C c NN cord-001734-bbeznd3r 88 50 - - HYPH cord-001734-bbeznd3r 88 51 double double NN cord-001734-bbeznd3r 88 52 labelled label VBN cord-001734-bbeznd3r 88 53 or or CC cord-001734-bbeznd3r 88 54 15 15 CD cord-001734-bbeznd3r 88 55 N n CD cord-001734-bbeznd3r 88 56 - - HYPH cord-001734-bbeznd3r 88 57 labelled label VBN cord-001734-bbeznd3r 88 58 sample sample NN cord-001734-bbeznd3r 88 59 at at IN cord-001734-bbeznd3r 88 60 a a DT cord-001734-bbeznd3r 88 61 protein protein NN cord-001734-bbeznd3r 88 62 concentration concentration NN cord-001734-bbeznd3r 88 63 of of IN cord-001734-bbeznd3r 88 64 500 500 CD cord-001734-bbeznd3r 88 65 μM μm CD cord-001734-bbeznd3r 88 66 in in IN cord-001734-bbeznd3r 88 67 90 90 CD cord-001734-bbeznd3r 88 68 % % NN cord-001734-bbeznd3r 88 69 H h NN cord-001734-bbeznd3r 88 70 2 2 CD cord-001734-bbeznd3r 88 71 O/10 o/10 NN cord-001734-bbeznd3r 88 72 % % NN cord-001734-bbeznd3r 88 73 D d NN cord-001734-bbeznd3r 88 74 2 2 CD cord-001734-bbeznd3r 88 75 O o NN cord-001734-bbeznd3r 88 76 ( ( -LRB- cord-001734-bbeznd3r 88 77 pH pH NNP cord-001734-bbeznd3r 88 78 4.0 4.0 CD cord-001734-bbeznd3r 88 79 ) ) -RRB- cord-001734-bbeznd3r 88 80 . . . cord-001734-bbeznd3r 89 1 For for IN cord-001734-bbeznd3r 89 2 the the DT cord-001734-bbeznd3r 89 3 refolded refolde VBN cord-001734-bbeznd3r 89 4 NS2B NS2B NNP cord-001734-bbeznd3r 89 5 - - HYPH cord-001734-bbeznd3r 89 6 NS3pro NS3pro NNP cord-001734-bbeznd3r 89 7 complexes complex NNS cord-001734-bbeznd3r 89 8 , , , cord-001734-bbeznd3r 89 9 HSQC HSQC NNP cord-001734-bbeznd3r 89 10 spectra spectrum NNS cord-001734-bbeznd3r 89 11 were be VBD cord-001734-bbeznd3r 89 12 collected collect VBN cord-001734-bbeznd3r 89 13 for for IN cord-001734-bbeznd3r 89 14 15 15 CD cord-001734-bbeznd3r 89 15 N n CD cord-001734-bbeznd3r 89 16 - - HYPH cord-001734-bbeznd3r 89 17 labeled label VBN cord-001734-bbeznd3r 89 18 samples sample NNS cord-001734-bbeznd3r 89 19 in in IN cord-001734-bbeznd3r 89 20 either either DT cord-001734-bbeznd3r 89 21 acetate acetate NN cord-001734-bbeznd3r 89 22 buffer buffer NN cord-001734-bbeznd3r 89 23 ( ( -LRB- cord-001734-bbeznd3r 89 24 pH pH NNP cord-001734-bbeznd3r 89 25 4.0 4.0 CD cord-001734-bbeznd3r 89 26 ) ) -RRB- cord-001734-bbeznd3r 89 27 , , , cord-001734-bbeznd3r 89 28 or or CC cord-001734-bbeznd3r 89 29 phosphate phosphate NN cord-001734-bbeznd3r 89 30 buffer buffer NN cord-001734-bbeznd3r 89 31 ( ( -LRB- cord-001734-bbeznd3r 89 32 pH pH NNP cord-001734-bbeznd3r 89 33 7.5 7.5 CD cord-001734-bbeznd3r 89 34 ) ) -RRB- cord-001734-bbeznd3r 89 35 in in IN cord-001734-bbeznd3r 89 36 the the DT cord-001734-bbeznd3r 89 37 absence absence NN cord-001734-bbeznd3r 89 38 and and CC cord-001734-bbeznd3r 89 39 in in IN cord-001734-bbeznd3r 89 40 the the DT cord-001734-bbeznd3r 89 41 presence presence NN cord-001734-bbeznd3r 89 42 of of IN cord-001734-bbeznd3r 89 43 inhibitor inhibitor NN cord-001734-bbeznd3r 89 44 p p NNP cord-001734-bbeznd3r 89 45 - - : cord-001734-bbeznd3r 89 46 Nitrophenyl Nitrophenyl NNP cord-001734-bbeznd3r 89 47 - - HYPH cord-001734-bbeznd3r 89 48 pguanidino pguanidino NN cord-001734-bbeznd3r 89 49 benzoate benzoate NN cord-001734-bbeznd3r 89 50 [ [ -LRB- cord-001734-bbeznd3r 89 51 11 11 CD cord-001734-bbeznd3r 89 52 ] ] -RRB- cord-001734-bbeznd3r 89 53 . . . cord-001734-bbeznd3r 90 1 For for IN cord-001734-bbeznd3r 90 2 assessing assess VBG cord-001734-bbeznd3r 90 3 the the DT cord-001734-bbeznd3r 90 4 backbone backbone NN cord-001734-bbeznd3r 90 5 dynamics dynamic NNS cord-001734-bbeznd3r 90 6 on on IN cord-001734-bbeznd3r 90 7 the the DT cord-001734-bbeznd3r 90 8 ps ps NNP cord-001734-bbeznd3r 90 9 - - HYPH cord-001734-bbeznd3r 90 10 ns ns NNP cord-001734-bbeznd3r 90 11 time time NN cord-001734-bbeznd3r 90 12 scale scale NN cord-001734-bbeznd3r 90 13 , , , cord-001734-bbeznd3r 90 14 { { -LRB- cord-001734-bbeznd3r 90 15 1 1 CD cord-001734-bbeznd3r 90 16 H}-15 H}-15 NNP cord-001734-bbeznd3r 90 17 N n CD cord-001734-bbeznd3r 90 18 steady steady JJ cord-001734-bbeznd3r 90 19 - - HYPH cord-001734-bbeznd3r 90 20 state state NN cord-001734-bbeznd3r 90 21 NOEs no NNS cord-001734-bbeznd3r 90 22 were be VBD cord-001734-bbeznd3r 90 23 obtained obtain VBN cord-001734-bbeznd3r 90 24 by by IN cord-001734-bbeznd3r 90 25 recording record VBG cord-001734-bbeznd3r 90 26 spectra spectrum NNS cord-001734-bbeznd3r 90 27 on on IN cord-001734-bbeznd3r 90 28 the the DT cord-001734-bbeznd3r 90 29 15 15 CD cord-001734-bbeznd3r 90 30 N n CD cord-001734-bbeznd3r 90 31 - - HYPH cord-001734-bbeznd3r 90 32 labeled label VBN cord-001734-bbeznd3r 90 33 NS3pro NS3pro NNP cord-001734-bbeznd3r 90 34 domain domain NN cord-001734-bbeznd3r 90 35 at at IN cord-001734-bbeznd3r 90 36 500 500 CD cord-001734-bbeznd3r 90 37 μM μM NNS cord-001734-bbeznd3r 90 38 in in IN cord-001734-bbeznd3r 90 39 either either DT cord-001734-bbeznd3r 90 40 Milli Milli NNP cord-001734-bbeznd3r 90 41 - - HYPH cord-001734-bbeznd3r 90 42 Q Q NNP cord-001734-bbeznd3r 90 43 water water NN cord-001734-bbeznd3r 90 44 ( ( -LRB- cord-001734-bbeznd3r 90 45 pH pH NNP cord-001734-bbeznd3r 90 46 4.0 4.0 CD cord-001734-bbeznd3r 90 47 ) ) -RRB- cord-001734-bbeznd3r 90 48 , , , cord-001734-bbeznd3r 90 49 with with IN cord-001734-bbeznd3r 90 50 and and CC cord-001734-bbeznd3r 90 51 without without IN cord-001734-bbeznd3r 90 52 1 1 CD cord-001734-bbeznd3r 90 53 H h NN cord-001734-bbeznd3r 90 54 presaturation presaturation NN cord-001734-bbeznd3r 90 55 with with IN cord-001734-bbeznd3r 90 56 duration duration NN cord-001734-bbeznd3r 90 57 of of IN cord-001734-bbeznd3r 90 58 3 3 CD cord-001734-bbeznd3r 90 59 s s NN cord-001734-bbeznd3r 90 60 plus plus CC cord-001734-bbeznd3r 90 61 a a DT cord-001734-bbeznd3r 90 62 relaxation relaxation NN cord-001734-bbeznd3r 90 63 delay delay NN cord-001734-bbeznd3r 90 64 of of IN cord-001734-bbeznd3r 90 65 6 6 CD cord-001734-bbeznd3r 90 66 s s NN cord-001734-bbeznd3r 90 67 at at IN cord-001734-bbeznd3r 90 68 800 800 CD cord-001734-bbeznd3r 90 69 MHz MHz NNS cord-001734-bbeznd3r 90 70 . . . cord-001734-bbeznd3r 91 1 All all DT cord-001734-bbeznd3r 91 2 NMR NMR NNP cord-001734-bbeznd3r 91 3 data datum NNS cord-001734-bbeznd3r 91 4 were be VBD cord-001734-bbeznd3r 91 5 processed process VBN cord-001734-bbeznd3r 91 6 with with IN cord-001734-bbeznd3r 91 7 NMRPipe nmrpipe NN cord-001734-bbeznd3r 91 8 [ [ -LRB- cord-001734-bbeznd3r 91 9 24 24 CD cord-001734-bbeznd3r 91 10 ] ] -RRB- cord-001734-bbeznd3r 91 11 and and CC cord-001734-bbeznd3r 91 12 analysed analyse VBD cord-001734-bbeznd3r 91 13 with with IN cord-001734-bbeznd3r 91 14 NMRView nmrview JJ cord-001734-bbeznd3r 91 15 [ [ -LRB- cord-001734-bbeznd3r 91 16 25 25 CD cord-001734-bbeznd3r 91 17 ] ] -RRB- cord-001734-bbeznd3r 91 18 . . . cord-001734-bbeznd3r 92 1 NH NH NNP cord-001734-bbeznd3r 92 2 , , , cord-001734-bbeznd3r 92 3 N N NNP cord-001734-bbeznd3r 92 4 , , , cord-001734-bbeznd3r 92 5 Cα Cα NNP cord-001734-bbeznd3r 92 6 and and CC cord-001734-bbeznd3r 92 7 Cβ Cβ NNP cord-001734-bbeznd3r 92 8 chemical chemical NN cord-001734-bbeznd3r 92 9 shifts shift NNS cord-001734-bbeznd3r 92 10 of of IN cord-001734-bbeznd3r 92 11 the the DT cord-001734-bbeznd3r 92 12 isolated isolated JJ cord-001734-bbeznd3r 92 13 NS3pro ns3pro NN cord-001734-bbeznd3r 92 14 in in IN cord-001734-bbeznd3r 92 15 water water NN cord-001734-bbeznd3r 92 16 at at IN cord-001734-bbeznd3r 92 17 pH pH NNP cord-001734-bbeznd3r 92 18 4.0 4.0 CD cord-001734-bbeznd3r 92 19 were be VBD cord-001734-bbeznd3r 92 20 further further RB cord-001734-bbeznd3r 92 21 analyzed analyze VBN cord-001734-bbeznd3r 92 22 by by IN cord-001734-bbeznd3r 92 23 both both DT cord-001734-bbeznd3r 92 24 Delta2D Delta2D NNS cord-001734-bbeznd3r 92 25 [ [ -LRB- cord-001734-bbeznd3r 92 26 26 26 CD cord-001734-bbeznd3r 92 27 ] ] -RRB- cord-001734-bbeznd3r 92 28 to to TO cord-001734-bbeznd3r 92 29 derive derive VB cord-001734-bbeznd3r 92 30 the the DT cord-001734-bbeznd3r 92 31 secondary secondary JJ cord-001734-bbeznd3r 92 32 structure structure NN cord-001734-bbeznd3r 92 33 population population NN cord-001734-bbeznd3r 92 34 . . . cord-001734-bbeznd3r 93 1 For for IN cord-001734-bbeznd3r 93 2 each each DT cord-001734-bbeznd3r 93 3 spin spin NN cord-001734-bbeznd3r 93 4 - - HYPH cord-001734-bbeznd3r 93 5 labeled label VBN cord-001734-bbeznd3r 93 6 single single JJ cord-001734-bbeznd3r 93 7 - - HYPH cord-001734-bbeznd3r 93 8 cysteine cysteine NN cord-001734-bbeznd3r 93 9 mutant mutant NN cord-001734-bbeznd3r 93 10 , , , cord-001734-bbeznd3r 93 11 a a DT cord-001734-bbeznd3r 93 12 pair pair NN cord-001734-bbeznd3r 93 13 of of IN cord-001734-bbeznd3r 93 14 2D 2d NN cord-001734-bbeznd3r 93 15 1 1 CD cord-001734-bbeznd3r 93 16 H-15 H-15 NNP cord-001734-bbeznd3r 93 17 N N NNP cord-001734-bbeznd3r 93 18 HSQC HSQC NNP cord-001734-bbeznd3r 93 19 spectra spectrum NNS cord-001734-bbeznd3r 93 20 were be VBD cord-001734-bbeznd3r 93 21 acquired acquire VBN cord-001734-bbeznd3r 93 22 at at IN cord-001734-bbeznd3r 93 23 a a DT cord-001734-bbeznd3r 93 24 protein protein NN cord-001734-bbeznd3r 93 25 concentration concentration NN cord-001734-bbeznd3r 93 26 of of IN cord-001734-bbeznd3r 93 27 150 150 CD cord-001734-bbeznd3r 93 28 μM μm NN cord-001734-bbeznd3r 93 29 in in IN cord-001734-bbeznd3r 93 30 Milli Milli NNP cord-001734-bbeznd3r 93 31 - - HYPH cord-001734-bbeznd3r 93 32 Q Q NNP cord-001734-bbeznd3r 93 33 water water NN cord-001734-bbeznd3r 93 34 ( ( -LRB- cord-001734-bbeznd3r 93 35 pH pH NNP cord-001734-bbeznd3r 93 36 4.0 4.0 CD cord-001734-bbeznd3r 93 37 ) ) -RRB- cord-001734-bbeznd3r 93 38 : : : cord-001734-bbeznd3r 93 39 one one CD cord-001734-bbeznd3r 93 40 for for IN cord-001734-bbeznd3r 93 41 the the DT cord-001734-bbeznd3r 93 42 spin spin NN cord-001734-bbeznd3r 93 43 - - HYPH cord-001734-bbeznd3r 93 44 labeled label VBN cord-001734-bbeznd3r 93 45 sample sample NN cord-001734-bbeznd3r 93 46 in in IN cord-001734-bbeznd3r 93 47 the the DT cord-001734-bbeznd3r 93 48 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 93 49 form form NN cord-001734-bbeznd3r 93 50 , , , cord-001734-bbeznd3r 93 51 and and CC cord-001734-bbeznd3r 93 52 another another DT cord-001734-bbeznd3r 93 53 after after IN cord-001734-bbeznd3r 93 54 adding add VBG cord-001734-bbeznd3r 93 55 ascorbic ascorbic NN cord-001734-bbeznd3r 93 56 acid acid NN cord-001734-bbeznd3r 93 57 ( ( -LRB- cord-001734-bbeznd3r 93 58 to to IN cord-001734-bbeznd3r 93 59 10 10 CD cord-001734-bbeznd3r 93 60 mM mm CD cord-001734-bbeznd3r 93 61 ) ) -RRB- cord-001734-bbeznd3r 93 62 to to IN cord-001734-bbeznd3r 93 63 the the DT cord-001734-bbeznd3r 93 64 sample sample NN cord-001734-bbeznd3r 93 65 to to TO cord-001734-bbeznd3r 93 66 reduce reduce VB cord-001734-bbeznd3r 93 67 the the DT cord-001734-bbeznd3r 93 68 nitroxide nitroxide NN cord-001734-bbeznd3r 93 69 , , , cord-001734-bbeznd3r 93 70 yielding yield VBG cord-001734-bbeznd3r 93 71 the the DT cord-001734-bbeznd3r 93 72 diamagnetic diamagnetic JJ cord-001734-bbeznd3r 93 73 sample sample NN cord-001734-bbeznd3r 93 74 . . . cord-001734-bbeznd3r 94 1 We -PRON- PRP cord-001734-bbeznd3r 94 2 also also RB cord-001734-bbeznd3r 94 3 acquired acquire VBD cord-001734-bbeznd3r 94 4 HSQC HSQC NNP cord-001734-bbeznd3r 94 5 spectra spectra NNP cord-001734-bbeznd3r 94 6 for for IN cord-001734-bbeznd3r 94 7 3 3 CD cord-001734-bbeznd3r 94 8 corresponding correspond VBG cord-001734-bbeznd3r 94 9 cysteine cysteine JJ cord-001734-bbeznd3r 94 10 mutants mutant NNS cord-001734-bbeznd3r 94 11 without without IN cord-001734-bbeznd3r 94 12 spin spin NN cord-001734-bbeznd3r 94 13 - - HYPH cord-001734-bbeznd3r 94 14 labelling labelling NN cord-001734-bbeznd3r 94 15 at at IN cord-001734-bbeznd3r 94 16 the the DT cord-001734-bbeznd3r 94 17 same same JJ cord-001734-bbeznd3r 94 18 conditions condition NNS cord-001734-bbeznd3r 94 19 and and CC cord-001734-bbeznd3r 94 20 only only RB cord-001734-bbeznd3r 94 21 several several JJ cord-001734-bbeznd3r 94 22 HSQC HSQC NNP cord-001734-bbeznd3r 94 23 peaks peak NNS cord-001734-bbeznd3r 94 24 slightly slightly RB cord-001734-bbeznd3r 94 25 shifted shift VBD cord-001734-bbeznd3r 94 26 after after IN cord-001734-bbeznd3r 94 27 spin spin NN cord-001734-bbeznd3r 94 28 - - HYPH cord-001734-bbeznd3r 94 29 labeling labeling NN cord-001734-bbeznd3r 94 30 , , , cord-001734-bbeznd3r 94 31 indicating indicate VBG cord-001734-bbeznd3r 94 32 that that IN cord-001734-bbeznd3r 94 33 the the DT cord-001734-bbeznd3r 94 34 spin spin NN cord-001734-bbeznd3r 94 35 - - HYPH cord-001734-bbeznd3r 94 36 labeling labeling NN cord-001734-bbeznd3r 94 37 would would MD cord-001734-bbeznd3r 94 38 not not RB cord-001734-bbeznd3r 94 39 significantly significantly RB cord-001734-bbeznd3r 94 40 change change VB cord-001734-bbeznd3r 94 41 the the DT cord-001734-bbeznd3r 94 42 conformation conformation NN cord-001734-bbeznd3r 94 43 . . . cord-001734-bbeznd3r 95 1 The the DT cord-001734-bbeznd3r 95 2 spectra spectrum NNS cord-001734-bbeznd3r 95 3 were be VBD cord-001734-bbeznd3r 95 4 subsequently subsequently RB cord-001734-bbeznd3r 95 5 analyzed analyze VBN cord-001734-bbeznd3r 95 6 to to TO cord-001734-bbeznd3r 95 7 obtain obtain VB cord-001734-bbeznd3r 95 8 intensity intensity NN cord-001734-bbeznd3r 95 9 ratios ratio NNS cord-001734-bbeznd3r 95 10 of of IN cord-001734-bbeznd3r 95 11 HSQC HSQC NNP cord-001734-bbeznd3r 95 12 peaks peak NNS cord-001734-bbeznd3r 95 13 in in IN cord-001734-bbeznd3r 95 14 the the DT cord-001734-bbeznd3r 95 15 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 95 16 and and CC cord-001734-bbeznd3r 95 17 diamagnetic diamagnetic JJ cord-001734-bbeznd3r 95 18 forms form NNS cord-001734-bbeznd3r 95 19 using use VBG cord-001734-bbeznd3r 95 20 the the DT cord-001734-bbeznd3r 95 21 programs program NNS cord-001734-bbeznd3r 95 22 nmrPipe nmrpipe LS cord-001734-bbeznd3r 95 23 [ [ -LRB- cord-001734-bbeznd3r 95 24 24 24 CD cord-001734-bbeznd3r 95 25 ] ] -RRB- cord-001734-bbeznd3r 95 26 . . . cord-001734-bbeznd3r 96 1 Protein protein NN cord-001734-bbeznd3r 96 2 structures structure NNS cord-001734-bbeznd3r 96 3 were be VBD cord-001734-bbeznd3r 96 4 displayed display VBN cord-001734-bbeznd3r 96 5 by by IN cord-001734-bbeznd3r 96 6 PyMol PyMol NNP cord-001734-bbeznd3r 96 7 molecular molecular JJ cord-001734-bbeznd3r 96 8 graphics graphic NNS cord-001734-bbeznd3r 96 9 system system NN cord-001734-bbeznd3r 96 10 ( ( -LRB- cord-001734-bbeznd3r 96 11 W. W. NNP cord-001734-bbeznd3r 96 12 L. L. NNP cord-001734-bbeznd3r 96 13 DeLano DeLano NNP cord-001734-bbeznd3r 96 14 , , , cord-001734-bbeznd3r 96 15 DeLano DeLano NNP cord-001734-bbeznd3r 96 16 Scientific Scientific NNP cord-001734-bbeznd3r 96 17 LLC LLC NNP cord-001734-bbeznd3r 96 18 , , , cord-001734-bbeznd3r 96 19 San San NNP cord-001734-bbeznd3r 96 20 Carlos Carlos NNP cord-001734-bbeznd3r 96 21 , , , cord-001734-bbeznd3r 96 22 CA CA NNP cord-001734-bbeznd3r 96 23 ) ) -RRB- cord-001734-bbeznd3r 96 24 . . . cord-001734-bbeznd3r 97 1 The the DT cord-001734-bbeznd3r 97 2 crystal crystal JJ cord-001734-bbeznd3r 97 3 structure structure NN cord-001734-bbeznd3r 97 4 of of IN cord-001734-bbeznd3r 97 5 the the DT cord-001734-bbeznd3r 97 6 NS2B NS2B NNP cord-001734-bbeznd3r 97 7 - - HYPH cord-001734-bbeznd3r 97 8 NS3pro ns3pro NN cord-001734-bbeznd3r 97 9 complex complex NN cord-001734-bbeznd3r 97 10 ( ( -LRB- cord-001734-bbeznd3r 97 11 PDB PDB NNP cord-001734-bbeznd3r 97 12 code code NN cord-001734-bbeznd3r 97 13 : : : cord-001734-bbeznd3r 97 14 2FOM 2fom LS cord-001734-bbeznd3r 97 15 ) ) -RRB- cord-001734-bbeznd3r 97 16 with with IN cord-001734-bbeznd3r 97 17 an an DT cord-001734-bbeznd3r 97 18 open open JJ cord-001734-bbeznd3r 97 19 conformation conformation NN cord-001734-bbeznd3r 97 20 [ [ -LRB- cord-001734-bbeznd3r 97 21 7 7 CD cord-001734-bbeznd3r 97 22 ] ] -RRB- cord-001734-bbeznd3r 97 23 was be VBD cord-001734-bbeznd3r 97 24 selected select VBN cord-001734-bbeznd3r 97 25 for for IN cord-001734-bbeznd3r 97 26 molecular molecular JJ cord-001734-bbeznd3r 97 27 dynamics dynamic NNS cord-001734-bbeznd3r 97 28 simulations simulation NNS cord-001734-bbeznd3r 97 29 . . . cord-001734-bbeznd3r 98 1 As as IN cord-001734-bbeznd3r 98 2 NS2B NS2B NNP cord-001734-bbeznd3r 98 3 residues residue NNS cord-001734-bbeznd3r 98 4 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 98 5 are be VBP cord-001734-bbeznd3r 98 6 missing miss VBG cord-001734-bbeznd3r 98 7 in in IN cord-001734-bbeznd3r 98 8 the the DT cord-001734-bbeznd3r 98 9 crystal crystal NN cord-001734-bbeznd3r 98 10 structure structure NN cord-001734-bbeznd3r 98 11 , , , cord-001734-bbeznd3r 98 12 those those DT cord-001734-bbeznd3r 98 13 residues residue NNS cord-001734-bbeznd3r 98 14 were be VBD cord-001734-bbeznd3r 98 15 added add VBN cord-001734-bbeznd3r 98 16 and and CC cord-001734-bbeznd3r 98 17 the the DT cord-001734-bbeznd3r 98 18 obtained obtain VBN cord-001734-bbeznd3r 98 19 structure structure NN cord-001734-bbeznd3r 98 20 was be VBD cord-001734-bbeznd3r 98 21 post post RB cord-001734-bbeznd3r 98 22 - - JJ cord-001734-bbeznd3r 98 23 processed process VBN cord-001734-bbeznd3r 98 24 as as IN cord-001734-bbeznd3r 98 25 previously previously RB cord-001734-bbeznd3r 98 26 described describe VBN cord-001734-bbeznd3r 98 27 [ [ -LRB- cord-001734-bbeznd3r 98 28 20 20 CD cord-001734-bbeznd3r 98 29 , , , cord-001734-bbeznd3r 98 30 21 21 CD cord-001734-bbeznd3r 98 31 ] ] -RRB- cord-001734-bbeznd3r 98 32 . . . cord-001734-bbeznd3r 99 1 The the DT cord-001734-bbeznd3r 99 2 simulation simulation NN cord-001734-bbeznd3r 99 3 cell cell NN cord-001734-bbeznd3r 99 4 is be VBZ cord-001734-bbeznd3r 99 5 a a DT cord-001734-bbeznd3r 99 6 periodic periodic JJ cord-001734-bbeznd3r 99 7 cubic cubic JJ cord-001734-bbeznd3r 99 8 box box NN cord-001734-bbeznd3r 99 9 with with IN cord-001734-bbeznd3r 99 10 a a DT cord-001734-bbeznd3r 99 11 minimum minimum JJ cord-001734-bbeznd3r 99 12 distance distance NN cord-001734-bbeznd3r 99 13 of of IN cord-001734-bbeznd3r 99 14 10 10 CD cord-001734-bbeznd3r 99 15 Å å NN cord-001734-bbeznd3r 99 16 between between IN cord-001734-bbeznd3r 99 17 the the DT cord-001734-bbeznd3r 99 18 protein protein NN cord-001734-bbeznd3r 99 19 and and CC cord-001734-bbeznd3r 99 20 the the DT cord-001734-bbeznd3r 99 21 box box NN cord-001734-bbeznd3r 99 22 walls wall NNS cord-001734-bbeznd3r 99 23 to to TO cord-001734-bbeznd3r 99 24 ensure ensure VB cord-001734-bbeznd3r 99 25 the the DT cord-001734-bbeznd3r 99 26 protein protein NN cord-001734-bbeznd3r 99 27 would would MD cord-001734-bbeznd3r 99 28 not not RB cord-001734-bbeznd3r 99 29 directly directly RB cord-001734-bbeznd3r 99 30 interact interact VB cord-001734-bbeznd3r 99 31 with with IN cord-001734-bbeznd3r 99 32 its -PRON- PRP$ cord-001734-bbeznd3r 99 33 own own JJ cord-001734-bbeznd3r 99 34 periodic periodic JJ cord-001734-bbeznd3r 99 35 images image NNS cord-001734-bbeznd3r 99 36 given give VBN cord-001734-bbeznd3r 99 37 the the DT cord-001734-bbeznd3r 99 38 cutoff cutoff NN cord-001734-bbeznd3r 99 39 . . . cord-001734-bbeznd3r 100 1 The the DT cord-001734-bbeznd3r 100 2 water water NN cord-001734-bbeznd3r 100 3 molecules molecule NNS cord-001734-bbeznd3r 100 4 , , , cord-001734-bbeznd3r 100 5 described describe VBN cord-001734-bbeznd3r 100 6 using use VBG cord-001734-bbeznd3r 100 7 the the DT cord-001734-bbeznd3r 100 8 TIP3P tip3p CD cord-001734-bbeznd3r 100 9 model model NN cord-001734-bbeznd3r 100 10 , , , cord-001734-bbeznd3r 100 11 were be VBD cord-001734-bbeznd3r 100 12 filled fill VBN cord-001734-bbeznd3r 100 13 in in IN cord-001734-bbeznd3r 100 14 the the DT cord-001734-bbeznd3r 100 15 periodic periodic JJ cord-001734-bbeznd3r 100 16 cubic cubic JJ cord-001734-bbeznd3r 100 17 box box NN cord-001734-bbeznd3r 100 18 for for IN cord-001734-bbeznd3r 100 19 the the DT cord-001734-bbeznd3r 100 20 all all DT cord-001734-bbeznd3r 100 21 atom atom NN cord-001734-bbeznd3r 100 22 simulation simulation NN cord-001734-bbeznd3r 100 23 . . . cord-001734-bbeznd3r 101 1 6 6 CD cord-001734-bbeznd3r 102 1 Na Na NNP cord-001734-bbeznd3r 102 2 + + CC cord-001734-bbeznd3r 102 3 ions ion NNS cord-001734-bbeznd3r 102 4 were be VBD cord-001734-bbeznd3r 102 5 randomly randomly RB cord-001734-bbeznd3r 102 6 placed place VBN cord-001734-bbeznd3r 102 7 to to TO cord-001734-bbeznd3r 102 8 neutralize neutralize VB cord-001734-bbeznd3r 102 9 the the DT cord-001734-bbeznd3r 102 10 charge charge NN cord-001734-bbeznd3r 102 11 in in IN cord-001734-bbeznd3r 102 12 MD MD NNP cord-001734-bbeznd3r 102 13 system system NN cord-001734-bbeznd3r 102 14 . . . cord-001734-bbeznd3r 103 1 Three three CD cord-001734-bbeznd3r 103 2 independent independent JJ cord-001734-bbeznd3r 103 3 20-ns 20-ns CD cord-001734-bbeznd3r 103 4 MD MD NNP cord-001734-bbeznd3r 103 5 simulations simulation NNS cord-001734-bbeznd3r 103 6 for for IN cord-001734-bbeznd3r 103 7 either either DT cord-001734-bbeznd3r 103 8 NS2B NS2B NNP cord-001734-bbeznd3r 103 9 - - HYPH cord-001734-bbeznd3r 103 10 NS3pro ns3pro NN cord-001734-bbeznd3r 103 11 complex complex NN cord-001734-bbeznd3r 103 12 or or CC cord-001734-bbeznd3r 103 13 NS3pro ns3pro NN cord-001734-bbeznd3r 103 14 alone alone RB cord-001734-bbeznd3r 103 15 were be VBD cord-001734-bbeznd3r 103 16 performed perform VBN cord-001734-bbeznd3r 103 17 with with IN cord-001734-bbeznd3r 103 18 the the DT cord-001734-bbeznd3r 103 19 program program NN cord-001734-bbeznd3r 103 20 GROMACS GROMACS NNP cord-001734-bbeznd3r 103 21 [ [ -LRB- cord-001734-bbeznd3r 103 22 27 27 CD cord-001734-bbeznd3r 103 23 ] ] -RRB- cord-001734-bbeznd3r 103 24 with with IN cord-001734-bbeznd3r 103 25 the the DT cord-001734-bbeznd3r 103 26 AMBER-03 amber-03 CD cord-001734-bbeznd3r 103 27 [ [ -LRB- cord-001734-bbeznd3r 103 28 28 28 CD cord-001734-bbeznd3r 103 29 ] ] -RRB- cord-001734-bbeznd3r 103 30 all all DT cord-001734-bbeznd3r 103 31 - - HYPH cord-001734-bbeznd3r 103 32 atom atom NN cord-001734-bbeznd3r 103 33 force force NN cord-001734-bbeznd3r 103 34 field field NN cord-001734-bbeznd3r 103 35 . . . cord-001734-bbeznd3r 104 1 The the DT cord-001734-bbeznd3r 104 2 long long JJ cord-001734-bbeznd3r 104 3 - - HYPH cord-001734-bbeznd3r 104 4 range range NN cord-001734-bbeznd3r 104 5 electrostatic electrostatic JJ cord-001734-bbeznd3r 104 6 interactions interaction NNS cord-001734-bbeznd3r 104 7 were be VBD cord-001734-bbeznd3r 104 8 treated treat VBN cord-001734-bbeznd3r 104 9 using use VBG cord-001734-bbeznd3r 104 10 the the DT cord-001734-bbeznd3r 104 11 fast fast JJ cord-001734-bbeznd3r 104 12 particle particle NN cord-001734-bbeznd3r 104 13 - - HYPH cord-001734-bbeznd3r 104 14 mesh mesh NN cord-001734-bbeznd3r 104 15 Ewald Ewald NNP cord-001734-bbeznd3r 104 16 summation summation NN cord-001734-bbeznd3r 104 17 method method NN cord-001734-bbeznd3r 104 18 [ [ -LRB- cord-001734-bbeznd3r 104 19 29 29 CD cord-001734-bbeznd3r 104 20 ] ] -RRB- cord-001734-bbeznd3r 104 21 , , , cord-001734-bbeznd3r 104 22 with with IN cord-001734-bbeznd3r 104 23 the the DT cord-001734-bbeznd3r 104 24 real real JJ cord-001734-bbeznd3r 104 25 space space NN cord-001734-bbeznd3r 104 26 cutoff cutoff NN cord-001734-bbeznd3r 104 27 of of IN cord-001734-bbeznd3r 104 28 9 9 CD cord-001734-bbeznd3r 104 29 Å å NN cord-001734-bbeznd3r 104 30 and and CC cord-001734-bbeznd3r 104 31 a a DT cord-001734-bbeznd3r 104 32 cutoff cutoff NN cord-001734-bbeznd3r 104 33 of of IN cord-001734-bbeznd3r 104 34 14 14 CD cord-001734-bbeznd3r 104 35 Å å NN cord-001734-bbeznd3r 104 36 was be VBD cord-001734-bbeznd3r 104 37 used use VBN cord-001734-bbeznd3r 104 38 for for IN cord-001734-bbeznd3r 104 39 the the DT cord-001734-bbeznd3r 104 40 calculation calculation NN cord-001734-bbeznd3r 104 41 of of IN cord-001734-bbeznd3r 104 42 van van NNP cord-001734-bbeznd3r 104 43 der der NNP cord-001734-bbeznd3r 104 44 Waals Waals NNP cord-001734-bbeznd3r 104 45 interactions interaction NNS cord-001734-bbeznd3r 104 46 . . . cord-001734-bbeznd3r 105 1 The the DT cord-001734-bbeznd3r 105 2 temperature temperature NN cord-001734-bbeznd3r 105 3 during during IN cord-001734-bbeznd3r 105 4 the the DT cord-001734-bbeznd3r 105 5 simulations simulation NNS cord-001734-bbeznd3r 105 6 was be VBD cord-001734-bbeznd3r 105 7 kept keep VBN cord-001734-bbeznd3r 105 8 constant constant JJ cord-001734-bbeznd3r 105 9 at at IN cord-001734-bbeznd3r 105 10 300 300 CD cord-001734-bbeznd3r 105 11 K K NNP cord-001734-bbeznd3r 105 12 by by IN cord-001734-bbeznd3r 105 13 Berendsen Berendsen NNP cord-001734-bbeznd3r 105 14 's 's POS cord-001734-bbeznd3r 105 15 coupling coupling NN cord-001734-bbeznd3r 105 16 . . . cord-001734-bbeznd3r 106 1 The the DT cord-001734-bbeznd3r 106 2 pressure pressure NN cord-001734-bbeznd3r 106 3 was be VBD cord-001734-bbeznd3r 106 4 held hold VBN cord-001734-bbeznd3r 106 5 at at IN cord-001734-bbeznd3r 106 6 1 1 CD cord-001734-bbeznd3r 106 7 bar bar NN cord-001734-bbeznd3r 106 8 . . . cord-001734-bbeznd3r 107 1 The the DT cord-001734-bbeznd3r 107 2 isothermal isothermal JJ cord-001734-bbeznd3r 107 3 compressibility compressibility NN cord-001734-bbeznd3r 107 4 was be VBD cord-001734-bbeznd3r 107 5 4.5 4.5 CD cord-001734-bbeznd3r 107 6 Ã ã NN cord-001734-bbeznd3r 107 7 10 10 CD cord-001734-bbeznd3r 107 8 −5 −5 NN cord-001734-bbeznd3r 107 9 bar bar NN cord-001734-bbeznd3r 107 10 -1 -1 NN cord-001734-bbeznd3r 107 11 . . . cord-001734-bbeznd3r 108 1 The the DT cord-001734-bbeznd3r 108 2 time time NN cord-001734-bbeznd3r 108 3 step step NN cord-001734-bbeznd3r 108 4 was be VBD cord-001734-bbeznd3r 108 5 set set VBN cord-001734-bbeznd3r 108 6 as as IN cord-001734-bbeznd3r 108 7 2 2 CD cord-001734-bbeznd3r 108 8 fs f NNS cord-001734-bbeznd3r 108 9 . . . cord-001734-bbeznd3r 109 1 All all DT cord-001734-bbeznd3r 109 2 bond bond NN cord-001734-bbeznd3r 109 3 lengths length NNS cord-001734-bbeznd3r 109 4 including include VBG cord-001734-bbeznd3r 109 5 hydrogen hydrogen NN cord-001734-bbeznd3r 109 6 atoms atom NNS cord-001734-bbeznd3r 109 7 were be VBD cord-001734-bbeznd3r 109 8 constrained constrain VBN cord-001734-bbeznd3r 109 9 by by IN cord-001734-bbeznd3r 109 10 the the DT cord-001734-bbeznd3r 109 11 LINCS LINCS NNP cord-001734-bbeznd3r 109 12 algorithm algorithm NN cord-001734-bbeznd3r 109 13 [ [ -LRB- cord-001734-bbeznd3r 109 14 29 29 CD cord-001734-bbeznd3r 109 15 ] ] -RRB- cord-001734-bbeznd3r 109 16 . . . cord-001734-bbeznd3r 110 1 Prior prior RB cord-001734-bbeznd3r 110 2 to to IN cord-001734-bbeznd3r 110 3 MD MD NNP cord-001734-bbeznd3r 110 4 simulations simulation NNS cord-001734-bbeznd3r 110 5 , , , cord-001734-bbeznd3r 110 6 all all PDT cord-001734-bbeznd3r 110 7 the the DT cord-001734-bbeznd3r 110 8 initial initial JJ cord-001734-bbeznd3r 110 9 structures structure NNS cord-001734-bbeznd3r 110 10 were be VBD cord-001734-bbeznd3r 110 11 relaxed relax VBN cord-001734-bbeznd3r 110 12 by by IN cord-001734-bbeznd3r 110 13 500 500 CD cord-001734-bbeznd3r 110 14 steps step NNS cord-001734-bbeznd3r 110 15 of of IN cord-001734-bbeznd3r 110 16 energy energy NN cord-001734-bbeznd3r 110 17 minimization minimization NN cord-001734-bbeznd3r 110 18 using use VBG cord-001734-bbeznd3r 110 19 the the DT cord-001734-bbeznd3r 110 20 steepest steep JJS cord-001734-bbeznd3r 110 21 descent descent NN cord-001734-bbeznd3r 110 22 algorithm algorithm NN cord-001734-bbeznd3r 110 23 , , , cord-001734-bbeznd3r 110 24 followed follow VBN cord-001734-bbeznd3r 110 25 by by IN cord-001734-bbeznd3r 110 26 100 100 CD cord-001734-bbeznd3r 110 27 ps ps NN cord-001734-bbeznd3r 110 28 equilibration equilibration NN cord-001734-bbeznd3r 110 29 with with IN cord-001734-bbeznd3r 110 30 a a DT cord-001734-bbeznd3r 110 31 harmonic harmonic JJ cord-001734-bbeznd3r 110 32 restraint restraint NN cord-001734-bbeznd3r 110 33 potential potential NN cord-001734-bbeznd3r 110 34 applied apply VBD cord-001734-bbeznd3r 110 35 to to IN cord-001734-bbeznd3r 110 36 all all PDT cord-001734-bbeznd3r 110 37 the the DT cord-001734-bbeznd3r 110 38 heavy heavy JJ cord-001734-bbeznd3r 110 39 atoms atom NNS cord-001734-bbeznd3r 110 40 of of IN cord-001734-bbeznd3r 110 41 the the DT cord-001734-bbeznd3r 110 42 protease protease NN cord-001734-bbeznd3r 110 43 . . . cord-001734-bbeznd3r 111 1 As as IN cord-001734-bbeznd3r 111 2 the the DT cord-001734-bbeznd3r 111 3 20-ns 20-ns CD cord-001734-bbeznd3r 111 4 simulations simulation NNS cord-001734-bbeznd3r 111 5 can can MD cord-001734-bbeznd3r 111 6 not not RB cord-001734-bbeznd3r 111 7 reproduce reproduce VB cord-001734-bbeznd3r 111 8 the the DT cord-001734-bbeznd3r 111 9 folding folding NN cord-001734-bbeznd3r 111 10 - - HYPH cord-001734-bbeznd3r 111 11 unfolding unfold VBG cord-001734-bbeznd3r 111 12 event event NN cord-001734-bbeznd3r 111 13 , , , cord-001734-bbeznd3r 111 14 so so RB cord-001734-bbeznd3r 111 15 here here RB cord-001734-bbeznd3r 111 16 we -PRON- PRP cord-001734-bbeznd3r 111 17 attempted attempt VBD cord-001734-bbeznd3r 111 18 to to TO cord-001734-bbeznd3r 111 19 capture capture VB cord-001734-bbeznd3r 111 20 the the DT cord-001734-bbeznd3r 111 21 low low JJ cord-001734-bbeznd3r 111 22 - - HYPH cord-001734-bbeznd3r 111 23 frequency frequency NN cord-001734-bbeznd3r 111 24 correlation correlation NN cord-001734-bbeznd3r 111 25 motions motion NNS cord-001734-bbeznd3r 111 26 by by IN cord-001734-bbeznd3r 111 27 a a DT cord-001734-bbeznd3r 111 28 recently recently RB cord-001734-bbeznd3r 111 29 established establish VBN cord-001734-bbeznd3r 111 30 approach approach NN cord-001734-bbeznd3r 111 31 called call VBN cord-001734-bbeznd3r 111 32 MutInf MutInf NNP cord-001734-bbeznd3r 111 33 [ [ -LRB- cord-001734-bbeznd3r 111 34 30 30 CD cord-001734-bbeznd3r 111 35 ] ] -RRB- cord-001734-bbeznd3r 111 36 . . . cord-001734-bbeznd3r 112 1 MutInf MutInf NNP cord-001734-bbeznd3r 112 2 represents represent VBZ cord-001734-bbeznd3r 112 3 an an DT cord-001734-bbeznd3r 112 4 entropy entropy NN cord-001734-bbeznd3r 112 5 - - HYPH cord-001734-bbeznd3r 112 6 based base VBN cord-001734-bbeznd3r 112 7 approach approach NN cord-001734-bbeznd3r 112 8 to to TO cord-001734-bbeznd3r 112 9 analyze analyze VB cord-001734-bbeznd3r 112 10 ensembles ensemble NNS cord-001734-bbeznd3r 112 11 of of IN cord-001734-bbeznd3r 112 12 protein protein NN cord-001734-bbeznd3r 112 13 conformers conformer NNS cord-001734-bbeznd3r 112 14 , , , cord-001734-bbeznd3r 112 15 such such JJ cord-001734-bbeznd3r 112 16 as as IN cord-001734-bbeznd3r 112 17 those those DT cord-001734-bbeznd3r 112 18 from from IN cord-001734-bbeznd3r 112 19 molecular molecular JJ cord-001734-bbeznd3r 112 20 dynamics dynamic NNS cord-001734-bbeznd3r 112 21 simulations simulation NNS cord-001734-bbeznd3r 112 22 by by IN cord-001734-bbeznd3r 112 23 using use VBG cord-001734-bbeznd3r 112 24 internal internal JJ cord-001734-bbeznd3r 112 25 coordinates coordinate NNS cord-001734-bbeznd3r 112 26 and and CC cord-001734-bbeznd3r 112 27 focusing focus VBG cord-001734-bbeznd3r 112 28 on on IN cord-001734-bbeznd3r 112 29 dihedral dihedral JJ cord-001734-bbeznd3r 112 30 angles angle NNS cord-001734-bbeznd3r 112 31 . . . cord-001734-bbeznd3r 113 1 In in IN cord-001734-bbeznd3r 113 2 particular particular JJ cord-001734-bbeznd3r 113 3 , , , cord-001734-bbeznd3r 113 4 this this DT cord-001734-bbeznd3r 113 5 approach approach NN cord-001734-bbeznd3r 113 6 is be VBZ cord-001734-bbeznd3r 113 7 even even RB cord-001734-bbeznd3r 113 8 applicable applicable JJ cord-001734-bbeznd3r 113 9 for for IN cord-001734-bbeznd3r 113 10 detecting detect VBG cord-001734-bbeznd3r 113 11 conformational conformational JJ cord-001734-bbeznd3r 113 12 changes change NNS cord-001734-bbeznd3r 113 13 which which WDT cord-001734-bbeznd3r 113 14 are be VBP cord-001734-bbeznd3r 113 15 subtle subtle JJ cord-001734-bbeznd3r 113 16 in in IN cord-001734-bbeznd3r 113 17 the the DT cord-001734-bbeznd3r 113 18 short short JJ cord-001734-bbeznd3r 113 19 MD MD NNP cord-001734-bbeznd3r 113 20 simulations simulation NNS cord-001734-bbeznd3r 113 21 because because IN cord-001734-bbeznd3r 113 22 the the DT cord-001734-bbeznd3r 113 23 coupling coupling NN cord-001734-bbeznd3r 113 24 is be VBZ cord-001734-bbeznd3r 113 25 mostly mostly RB cord-001734-bbeznd3r 113 26 entropic entropic JJ cord-001734-bbeznd3r 113 27 in in IN cord-001734-bbeznd3r 113 28 nature nature NN cord-001734-bbeznd3r 113 29 [ [ -LRB- cord-001734-bbeznd3r 113 30 30 30 CD cord-001734-bbeznd3r 113 31 ] ] -RRB- cord-001734-bbeznd3r 113 32 . . . cord-001734-bbeznd3r 114 1 Briefly briefly RB cord-001734-bbeznd3r 114 2 , , , cord-001734-bbeznd3r 114 3 this this DT cord-001734-bbeznd3r 114 4 approach approach NN cord-001734-bbeznd3r 114 5 utilizes utilize VBZ cord-001734-bbeznd3r 114 6 second second JJ cord-001734-bbeznd3r 114 7 - - HYPH cord-001734-bbeznd3r 114 8 order order NN cord-001734-bbeznd3r 114 9 terms term NNS cord-001734-bbeznd3r 114 10 from from IN cord-001734-bbeznd3r 114 11 the the DT cord-001734-bbeznd3r 114 12 configurational configurational NNP cord-001734-bbeznd3r 114 13 entropy entropy NNP cord-001734-bbeznd3r 114 14 expansion expansion NN cord-001734-bbeznd3r 114 15 , , , cord-001734-bbeznd3r 114 16 called call VBD cord-001734-bbeznd3r 114 17 the the DT cord-001734-bbeznd3r 114 18 mutual mutual JJ cord-001734-bbeznd3r 114 19 information information NN cord-001734-bbeznd3r 114 20 , , , cord-001734-bbeznd3r 114 21 to to TO cord-001734-bbeznd3r 114 22 identify identify VB cord-001734-bbeznd3r 114 23 pairs pair NNS cord-001734-bbeznd3r 114 24 of of IN cord-001734-bbeznd3r 114 25 residues residue NNS cord-001734-bbeznd3r 114 26 with with IN cord-001734-bbeznd3r 114 27 correlated correlate VBN cord-001734-bbeznd3r 114 28 conformations conformation NNS cord-001734-bbeznd3r 114 29 , , , cord-001734-bbeznd3r 114 30 or or CC cord-001734-bbeznd3r 114 31 correlated correlate VBN cord-001734-bbeznd3r 114 32 motions motion NNS cord-001734-bbeznd3r 114 33 , , , cord-001734-bbeznd3r 114 34 in in IN cord-001734-bbeznd3r 114 35 an an DT cord-001734-bbeznd3r 114 36 equilibrium equilibrium NN cord-001734-bbeznd3r 114 37 ensemble ensemble NN cord-001734-bbeznd3r 114 38 [ [ -LRB- cord-001734-bbeznd3r 114 39 30 30 CD cord-001734-bbeznd3r 114 40 ] ] -RRB- cord-001734-bbeznd3r 114 41 . . . cord-001734-bbeznd3r 115 1 In in IN cord-001734-bbeznd3r 115 2 the the DT cord-001734-bbeznd3r 115 3 present present JJ cord-001734-bbeznd3r 115 4 study study NN cord-001734-bbeznd3r 115 5 , , , cord-001734-bbeznd3r 115 6 the the DT cord-001734-bbeznd3r 115 7 normalized normalized JJ cord-001734-bbeznd3r 115 8 matrix matrix NN cord-001734-bbeznd3r 115 9 values value NNS cord-001734-bbeznd3r 115 10 were be VBD cord-001734-bbeznd3r 115 11 used use VBN cord-001734-bbeznd3r 115 12 , , , cord-001734-bbeznd3r 115 13 and and CC cord-001734-bbeznd3r 115 14 0.3 0.3 CD cord-001734-bbeznd3r 115 15 was be VBD cord-001734-bbeznd3r 115 16 set set VBN cord-001734-bbeznd3r 115 17 up up RP cord-001734-bbeznd3r 115 18 to to TO cord-001734-bbeznd3r 115 19 be be VB cord-001734-bbeznd3r 115 20 the the DT cord-001734-bbeznd3r 115 21 threshold threshold NN cord-001734-bbeznd3r 115 22 value value NN cord-001734-bbeznd3r 115 23 to to TO cord-001734-bbeznd3r 115 24 determine determine VB cord-001734-bbeznd3r 115 25 the the DT cord-001734-bbeznd3r 115 26 pairs pair NNS cord-001734-bbeznd3r 115 27 of of IN cord-001734-bbeznd3r 115 28 highly highly RB cord-001734-bbeznd3r 115 29 correlated correlate VBN cord-001734-bbeznd3r 115 30 residues residue NNS cord-001734-bbeznd3r 115 31 . . . cord-001734-bbeznd3r 116 1 The the DT cord-001734-bbeznd3r 116 2 residue residue NN cord-001734-bbeznd3r 116 3 pairs pair NNS cord-001734-bbeznd3r 116 4 with with IN cord-001734-bbeznd3r 116 5 correlated correlate VBN cord-001734-bbeznd3r 116 6 values value NNS cord-001734-bbeznd3r 116 7 ! ! . cord-001734-bbeznd3r 117 1 0.3 0.3 CD cord-001734-bbeznd3r 117 2 make make VB cord-001734-bbeznd3r 117 3 up up RP cord-001734-bbeznd3r 117 4 the the DT cord-001734-bbeznd3r 117 5 top top JJ cord-001734-bbeznd3r 117 6 1 1 CD cord-001734-bbeznd3r 117 7 % % NN cord-001734-bbeznd3r 117 8 of of IN cord-001734-bbeznd3r 117 9 the the DT cord-001734-bbeznd3r 117 10 entire entire JJ cord-001734-bbeznd3r 117 11 matrix matrix NN cord-001734-bbeznd3r 117 12 . . . cord-001734-bbeznd3r 118 1 DNA dna NN cord-001734-bbeznd3r 118 2 fragments fragment NNS cord-001734-bbeznd3r 119 1 encoding encode VBG cord-001734-bbeznd3r 120 1 NS2B NS2B NNP cord-001734-bbeznd3r 120 2 ( ( -LRB- cord-001734-bbeznd3r 120 3 48 48 CD cord-001734-bbeznd3r 120 4 - - SYM cord-001734-bbeznd3r 120 5 100 100 CD cord-001734-bbeznd3r 120 6 ) ) -RRB- cord-001734-bbeznd3r 120 7 and and CC cord-001734-bbeznd3r 120 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 120 9 ( ( -LRB- cord-001734-bbeznd3r 120 10 14 14 CD cord-001734-bbeznd3r 120 11 - - SYM cord-001734-bbeznd3r 120 12 185 185 CD cord-001734-bbeznd3r 120 13 ) ) -RRB- cord-001734-bbeznd3r 120 14 were be VBD cord-001734-bbeznd3r 120 15 sub sub NN cord-001734-bbeznd3r 120 16 - - JJ cord-001734-bbeznd3r 120 17 cloned clone VBN cord-001734-bbeznd3r 120 18 into into IN cord-001734-bbeznd3r 120 19 the the DT cord-001734-bbeznd3r 120 20 expression expression NN cord-001734-bbeznd3r 120 21 vectors vector NNS cord-001734-bbeznd3r 120 22 pGEX-4T1 pgex-4t1 NN cord-001734-bbeznd3r 120 23 and and CC cord-001734-bbeznd3r 120 24 pET-28 pet-28 CD cord-001734-bbeznd3r 120 25 respectively respectively RB cord-001734-bbeznd3r 120 26 and and CC cord-001734-bbeznd3r 120 27 subsequently subsequently RB cord-001734-bbeznd3r 120 28 expressed express VBN cord-001734-bbeznd3r 120 29 in in IN cord-001734-bbeznd3r 120 30 E. E. NNP cord-001734-bbeznd3r 120 31 coli coli NNS cord-001734-bbeznd3r 121 1 BL21 BL21 NNP cord-001734-bbeznd3r 121 2 ( ( -LRB- cord-001734-bbeznd3r 121 3 DE3 DE3 NNP cord-001734-bbeznd3r 121 4 ) ) -RRB- cord-001734-bbeznd3r 121 5 Star Star NNP cord-001734-bbeznd3r 121 6 cells cell NNS cord-001734-bbeznd3r 121 7 . . . cord-001734-bbeznd3r 122 1 The the DT cord-001734-bbeznd3r 122 2 recombinant recombinant JJ cord-001734-bbeznd3r 122 3 NS3pro ns3pro NN cord-001734-bbeznd3r 122 4 protein protein NN cord-001734-bbeznd3r 122 5 was be VBD cord-001734-bbeznd3r 122 6 found find VBN cord-001734-bbeznd3r 122 7 to to TO cord-001734-bbeznd3r 122 8 be be VB cord-001734-bbeznd3r 122 9 completely completely RB cord-001734-bbeznd3r 122 10 insoluble insoluble JJ cord-001734-bbeznd3r 122 11 and and CC cord-001734-bbeznd3r 122 12 all all DT cord-001734-bbeznd3r 122 13 in in IN cord-001734-bbeznd3r 122 14 inclusion inclusion NN cord-001734-bbeznd3r 122 15 body body NN cord-001734-bbeznd3r 122 16 as as IN cord-001734-bbeznd3r 122 17 previously previously RB cord-001734-bbeznd3r 122 18 reported report VBD cord-001734-bbeznd3r 122 19 [ [ -LRB- cord-001734-bbeznd3r 122 20 7 7 CD cord-001734-bbeznd3r 122 21 , , , cord-001734-bbeznd3r 122 22 11 11 CD cord-001734-bbeznd3r 122 23 ] ] -RRB- cord-001734-bbeznd3r 122 24 . . . cord-001734-bbeznd3r 123 1 As as IN cord-001734-bbeznd3r 123 2 a a DT cord-001734-bbeznd3r 123 3 consequence consequence NN cord-001734-bbeznd3r 123 4 , , , cord-001734-bbeznd3r 123 5 the the DT cord-001734-bbeznd3r 123 6 NS3pro NS3pro NNP cord-001734-bbeznd3r 123 7 proteins protein NNS cord-001734-bbeznd3r 123 8 were be VBD cord-001734-bbeznd3r 123 9 first first RB cord-001734-bbeznd3r 123 10 purified purify VBN cord-001734-bbeznd3r 123 11 by by IN cord-001734-bbeznd3r 123 12 Ni Ni NNP cord-001734-bbeznd3r 123 13 2 2 CD cord-001734-bbeznd3r 124 1 + + CC cord-001734-bbeznd3r 125 1 -affinity -affinity : cord-001734-bbeznd3r 125 2 column column NN cord-001734-bbeznd3r 125 3 under under IN cord-001734-bbeznd3r 125 4 denaturing denature VBG cord-001734-bbeznd3r 125 5 condition condition NN cord-001734-bbeznd3r 125 6 in in IN cord-001734-bbeznd3r 125 7 the the DT cord-001734-bbeznd3r 125 8 presence presence NN cord-001734-bbeznd3r 125 9 of of IN cord-001734-bbeznd3r 125 10 8 8 CD cord-001734-bbeznd3r 125 11 M M NNP cord-001734-bbeznd3r 125 12 urea urea NN cord-001734-bbeznd3r 125 13 , , , cord-001734-bbeznd3r 125 14 followed follow VBN cord-001734-bbeznd3r 125 15 by by IN cord-001734-bbeznd3r 125 16 purification purification NN cord-001734-bbeznd3r 125 17 with with IN cord-001734-bbeznd3r 125 18 reverse reverse JJ cord-001734-bbeznd3r 125 19 - - HYPH cord-001734-bbeznd3r 125 20 phase phase NN cord-001734-bbeznd3r 125 21 ( ( -LRB- cord-001734-bbeznd3r 125 22 RP rp NN cord-001734-bbeznd3r 125 23 ) ) -RRB- cord-001734-bbeznd3r 125 24 HPLC HPLC NNP cord-001734-bbeznd3r 125 25 . . . cord-001734-bbeznd3r 126 1 On on IN cord-001734-bbeznd3r 126 2 the the DT cord-001734-bbeznd3r 126 3 other other JJ cord-001734-bbeznd3r 126 4 hand hand NN cord-001734-bbeznd3r 126 5 , , , cord-001734-bbeznd3r 126 6 the the DT cord-001734-bbeznd3r 126 7 GST GST NNP cord-001734-bbeznd3r 126 8 - - HYPH cord-001734-bbeznd3r 126 9 fused fuse VBN cord-001734-bbeznd3r 126 10 NS2B NS2B NNS cord-001734-bbeznd3r 126 11 ( ( -LRB- cord-001734-bbeznd3r 126 12 48 48 CD cord-001734-bbeznd3r 126 13 - - SYM cord-001734-bbeznd3r 126 14 100 100 CD cord-001734-bbeznd3r 126 15 ) ) -RRB- cord-001734-bbeznd3r 126 16 cofactor cofactor NN cord-001734-bbeznd3r 126 17 was be VBD cord-001734-bbeznd3r 126 18 found find VBN cord-001734-bbeznd3r 126 19 in in IN cord-001734-bbeznd3r 126 20 supernatant supernatant JJ cord-001734-bbeznd3r 126 21 and and CC cord-001734-bbeznd3r 126 22 thereby thereby RB cord-001734-bbeznd3r 126 23 purified purify VBN cord-001734-bbeznd3r 126 24 under under IN cord-001734-bbeznd3r 126 25 native native JJ cord-001734-bbeznd3r 126 26 condition condition NN cord-001734-bbeznd3r 126 27 , , , cord-001734-bbeznd3r 126 28 followed follow VBN cord-001734-bbeznd3r 126 29 by by IN cord-001734-bbeznd3r 126 30 the the DT cord-001734-bbeznd3r 126 31 thrombin thrombin JJ cord-001734-bbeznd3r 126 32 cleavage cleavage NN cord-001734-bbeznd3r 126 33 to to TO cord-001734-bbeznd3r 126 34 release release VB cord-001734-bbeznd3r 126 35 the the DT cord-001734-bbeznd3r 126 36 cofactor cofactor NN cord-001734-bbeznd3r 126 37 which which WDT cord-001734-bbeznd3r 126 38 was be VBD cord-001734-bbeznd3r 126 39 also also RB cord-001734-bbeznd3r 126 40 purified purify VBN cord-001734-bbeznd3r 126 41 by by IN cord-001734-bbeznd3r 126 42 RP RP NNP cord-001734-bbeznd3r 126 43 - - HYPH cord-001734-bbeznd3r 126 44 HPLC HPLC NNP cord-001734-bbeznd3r 126 45 . . . cord-001734-bbeznd3r 127 1 The the DT cord-001734-bbeznd3r 127 2 lyophilized lyophilized JJ cord-001734-bbeznd3r 127 3 powder powder NN cord-001734-bbeznd3r 127 4 of of IN cord-001734-bbeznd3r 127 5 the the DT cord-001734-bbeznd3r 127 6 NS2B NS2B NNP cord-001734-bbeznd3r 127 7 ( ( -LRB- cord-001734-bbeznd3r 127 8 48 48 CD cord-001734-bbeznd3r 127 9 - - SYM cord-001734-bbeznd3r 127 10 100 100 CD cord-001734-bbeznd3r 127 11 ) ) -RRB- cord-001734-bbeznd3r 127 12 was be VBD cord-001734-bbeznd3r 127 13 soluble soluble JJ cord-001734-bbeznd3r 127 14 both both DT cord-001734-bbeznd3r 127 15 in in IN cord-001734-bbeznd3r 127 16 Mill Mill NNP cord-001734-bbeznd3r 127 17 - - HYPH cord-001734-bbeznd3r 127 18 Q Q NNP cord-001734-bbeznd3r 127 19 water water NN cord-001734-bbeznd3r 127 20 and and CC cord-001734-bbeznd3r 127 21 in in IN cord-001734-bbeznd3r 127 22 buffers buffer NNS cord-001734-bbeznd3r 127 23 , , , cord-001734-bbeznd3r 127 24 while while IN cord-001734-bbeznd3r 127 25 the the DT cord-001734-bbeznd3r 127 26 NS3pro NS3pro NNP cord-001734-bbeznd3r 127 27 protein protein NN cord-001734-bbeznd3r 127 28 was be VBD cord-001734-bbeznd3r 127 29 highly highly RB cord-001734-bbeznd3r 127 30 soluble soluble JJ cord-001734-bbeznd3r 127 31 at at IN cord-001734-bbeznd3r 127 32 protein protein NN cord-001734-bbeznd3r 127 33 concentration concentration NN cord-001734-bbeznd3r 127 34 of of IN cord-001734-bbeznd3r 127 35 1 1 CD cord-001734-bbeznd3r 127 36 mM mm CD cord-001734-bbeznd3r 127 37 without without IN cord-001734-bbeznd3r 127 38 any any DT cord-001734-bbeznd3r 127 39 detectable detectable JJ cord-001734-bbeznd3r 127 40 aggregation aggregation NN cord-001734-bbeznd3r 127 41 for for IN cord-001734-bbeznd3r 127 42 at at RB cord-001734-bbeznd3r 127 43 least least JJS cord-001734-bbeznd3r 127 44 half half PDT cord-001734-bbeznd3r 127 45 a a DT cord-001734-bbeznd3r 127 46 year year NN cord-001734-bbeznd3r 127 47 in in IN cord-001734-bbeznd3r 127 48 Mill Mill NNP cord-001734-bbeznd3r 127 49 - - HYPH cord-001734-bbeznd3r 127 50 Q Q NNP cord-001734-bbeznd3r 127 51 water water NN cord-001734-bbeznd3r 127 52 . . . cord-001734-bbeznd3r 128 1 The the DT cord-001734-bbeznd3r 128 2 NS3pro NS3pro NNP cord-001734-bbeznd3r 128 3 protein protein NN cord-001734-bbeznd3r 128 4 also also RB cord-001734-bbeznd3r 128 5 could could MD cord-001734-bbeznd3r 128 6 be be VB cord-001734-bbeznd3r 128 7 quickly quickly RB cord-001734-bbeznd3r 128 8 diluted dilute VBN cord-001734-bbeznd3r 128 9 into into IN cord-001734-bbeznd3r 128 10 5 5 CD cord-001734-bbeznd3r 128 11 mM mm CD cord-001734-bbeznd3r 128 12 phosphate phosphate NN cord-001734-bbeznd3r 128 13 buffer buffer NN cord-001734-bbeznd3r 128 14 with with IN cord-001734-bbeznd3r 128 15 a a DT cord-001734-bbeznd3r 128 16 final final JJ cord-001734-bbeznd3r 128 17 protein protein NN cord-001734-bbeznd3r 128 18 concentration concentration NN cord-001734-bbeznd3r 128 19 of of IN cord-001734-bbeznd3r 128 20 100 100 CD cord-001734-bbeznd3r 128 21 μM μm NN cord-001734-bbeznd3r 128 22 and and CC cord-001734-bbeznd3r 128 23 pH ph NN cord-001734-bbeznd3r 128 24 of of IN cord-001734-bbeznd3r 128 25 7.0 7.0 CD cord-001734-bbeznd3r 128 26 without without IN cord-001734-bbeznd3r 128 27 visible visible JJ cord-001734-bbeznd3r 128 28 aggregates aggregate NNS cord-001734-bbeznd3r 128 29 for for IN cord-001734-bbeznd3r 128 30 1 1 CD cord-001734-bbeznd3r 128 31 hr hr NN cord-001734-bbeznd3r 128 32 , , , cord-001734-bbeznd3r 128 33 but but CC cord-001734-bbeznd3r 128 34 formed form VBD cord-001734-bbeznd3r 128 35 aggregates aggregate NNS cord-001734-bbeznd3r 128 36 in in IN cord-001734-bbeznd3r 128 37 NMR NMR NNP cord-001734-bbeznd3r 128 38 tube tube NN cord-001734-bbeznd3r 128 39 after after IN cord-001734-bbeznd3r 128 40 4 4 CD cord-001734-bbeznd3r 128 41 hr hr NN cord-001734-bbeznd3r 128 42 , , , cord-001734-bbeznd3r 128 43 which which WDT cord-001734-bbeznd3r 128 44 has have VBZ cord-001734-bbeznd3r 128 45 been be VBN cord-001734-bbeznd3r 128 46 commonly commonly RB cord-001734-bbeznd3r 128 47 observed observe VBN cord-001734-bbeznd3r 128 48 on on IN cord-001734-bbeznd3r 128 49 a a DT cord-001734-bbeznd3r 128 50 variety variety NN cord-001734-bbeznd3r 128 51 of of IN cord-001734-bbeznd3r 128 52 " " `` cord-001734-bbeznd3r 128 53 completely completely RB cord-001734-bbeznd3r 128 54 insoluble insoluble JJ cord-001734-bbeznd3r 128 55 " " '' cord-001734-bbeznd3r 128 56 proteins protein NNS cord-001734-bbeznd3r 128 57 previously previously RB cord-001734-bbeznd3r 128 58 reported report VBN cord-001734-bbeznd3r 128 59 by by IN cord-001734-bbeznd3r 128 60 us -PRON- PRP cord-001734-bbeznd3r 128 61 and and CC cord-001734-bbeznd3r 128 62 other other JJ cord-001734-bbeznd3r 128 63 groups group NNS cord-001734-bbeznd3r 128 64 [ [ -LRB- cord-001734-bbeznd3r 128 65 15 15 CD cord-001734-bbeznd3r 128 66 ] ] -RRB- cord-001734-bbeznd3r 128 67 [ [ -LRB- cord-001734-bbeznd3r 128 68 16 16 CD cord-001734-bbeznd3r 128 69 ] ] -RRB- cord-001734-bbeznd3r 128 70 [ [ -LRB- cord-001734-bbeznd3r 128 71 17 17 CD cord-001734-bbeznd3r 128 72 ] ] -RRB- cord-001734-bbeznd3r 128 73 [ [ -LRB- cord-001734-bbeznd3r 128 74 18 18 CD cord-001734-bbeznd3r 128 75 ] ] -RRB- cord-001734-bbeznd3r 128 76 . . . cord-001734-bbeznd3r 129 1 As as IN cord-001734-bbeznd3r 129 2 shown show VBN cord-001734-bbeznd3r 129 3 in in IN cord-001734-bbeznd3r 129 4 Fig Fig NNP cord-001734-bbeznd3r 129 5 1A 1a NN cord-001734-bbeznd3r 129 6 , , , cord-001734-bbeznd3r 129 7 NS3pro NS3pro NNP cord-001734-bbeznd3r 129 8 has have VBZ cord-001734-bbeznd3r 129 9 very very RB cord-001734-bbeznd3r 129 10 similar similar JJ cord-001734-bbeznd3r 129 11 far far JJ cord-001734-bbeznd3r 129 12 - - HYPH cord-001734-bbeznd3r 129 13 UV uv NN cord-001734-bbeznd3r 129 14 CD cd NN cord-001734-bbeznd3r 129 15 spectra spectrum NNS cord-001734-bbeznd3r 129 16 in in IN cord-001734-bbeznd3r 129 17 Milli Milli NNP cord-001734-bbeznd3r 129 18 - - HYPH cord-001734-bbeznd3r 129 19 Q Q NNP cord-001734-bbeznd3r 129 20 water water NN cord-001734-bbeznd3r 129 21 ( ( -LRB- cord-001734-bbeznd3r 130 1 pH pH NNP cord-001734-bbeznd3r 130 2 4.0 4.0 CD cord-001734-bbeznd3r 130 3 ) ) -RRB- cord-001734-bbeznd3r 130 4 and and CC cord-001734-bbeznd3r 130 5 5 5 CD cord-001734-bbeznd3r 130 6 mM mm CD cord-001734-bbeznd3r 130 7 phosphate phosphate NN cord-001734-bbeznd3r 130 8 buffer buffer NN cord-001734-bbeznd3r 130 9 ( ( -LRB- cord-001734-bbeznd3r 130 10 pH pH NNP cord-001734-bbeznd3r 130 11 7.0 7.0 CD cord-001734-bbeznd3r 130 12 ) ) -RRB- cord-001734-bbeznd3r 130 13 , , , cord-001734-bbeznd3r 130 14 with with IN cord-001734-bbeznd3r 130 15 the the DT cord-001734-bbeznd3r 130 16 maximal maximal JJ cord-001734-bbeznd3r 130 17 negative negative JJ cord-001734-bbeznd3r 130 18 signal signal NN cord-001734-bbeznd3r 130 19 at at IN cord-001734-bbeznd3r 130 20 200 200 CD cord-001734-bbeznd3r 130 21 nm nm NN cord-001734-bbeznd3r 130 22 and and CC cord-001734-bbeznd3r 130 23 no no DT cord-001734-bbeznd3r 130 24 positive positive JJ cord-001734-bbeznd3r 130 25 signal signal NN cord-001734-bbeznd3r 130 26 below below IN cord-001734-bbeznd3r 130 27 200 200 CD cord-001734-bbeznd3r 130 28 nm nm NN cord-001734-bbeznd3r 130 29 , , , cord-001734-bbeznd3r 130 30 which which WDT cord-001734-bbeznd3r 130 31 is be VBZ cord-001734-bbeznd3r 130 32 typical typical JJ cord-001734-bbeznd3r 130 33 of of IN cord-001734-bbeznd3r 130 34 a a DT cord-001734-bbeznd3r 130 35 predominantly predominantly RB cord-001734-bbeznd3r 130 36 disordered disordered JJ cord-001734-bbeznd3r 130 37 protein protein NN cord-001734-bbeznd3r 130 38 without without IN cord-001734-bbeznd3r 130 39 any any DT cord-001734-bbeznd3r 130 40 stable stable JJ cord-001734-bbeznd3r 130 41 secondary secondary JJ cord-001734-bbeznd3r 130 42 structure structure NN cord-001734-bbeznd3r 130 43 . . . cord-001734-bbeznd3r 131 1 This this DT cord-001734-bbeznd3r 131 2 indicates indicate VBZ cord-001734-bbeznd3r 131 3 that that IN cord-001734-bbeznd3r 131 4 the the DT cord-001734-bbeznd3r 131 5 isolated isolated JJ cord-001734-bbeznd3r 131 6 NS3pro ns3pro NN cord-001734-bbeznd3r 131 7 domain domain NN cord-001734-bbeznd3r 131 8 is be VBZ cord-001734-bbeznd3r 131 9 highly highly RB cord-001734-bbeznd3r 131 10 disordered disordered JJ cord-001734-bbeznd3r 131 11 in in IN cord-001734-bbeznd3r 131 12 aqueous aqueous JJ cord-001734-bbeznd3r 131 13 solution solution NN cord-001734-bbeznd3r 131 14 . . . cord-001734-bbeznd3r 132 1 Indeed indeed RB cord-001734-bbeznd3r 132 2 , , , cord-001734-bbeznd3r 132 3 the the DT cord-001734-bbeznd3r 132 4 deconvolution deconvolution NN cord-001734-bbeznd3r 132 5 of of IN cord-001734-bbeznd3r 132 6 its -PRON- PRP$ cord-001734-bbeznd3r 132 7 CD cd NN cord-001734-bbeznd3r 132 8 spectrum spectrum NN cord-001734-bbeznd3r 132 9 reveals reveal VBZ cord-001734-bbeznd3r 132 10 that that IN cord-001734-bbeznd3r 132 11 the the DT cord-001734-bbeznd3r 132 12 isolated isolated JJ cord-001734-bbeznd3r 132 13 NS3pro NS3pro NNP cord-001734-bbeznd3r 132 14 consists consist VBZ cord-001734-bbeznd3r 132 15 of of IN cord-001734-bbeznd3r 132 16 53 53 CD cord-001734-bbeznd3r 132 17 % % NN cord-001734-bbeznd3r 132 18 random random JJ cord-001734-bbeznd3r 132 19 coil coil NN cord-001734-bbeznd3r 132 20 , , , cord-001734-bbeznd3r 132 21 14 14 CD cord-001734-bbeznd3r 132 22 % % NN cord-001734-bbeznd3r 132 23 turn turn NN cord-001734-bbeznd3r 132 24 , , , cord-001734-bbeznd3r 132 25 29 29 CD cord-001734-bbeznd3r 132 26 % % NN cord-001734-bbeznd3r 132 27 extended extended JJ cord-001734-bbeznd3r 132 28 strand strand NN cord-001734-bbeznd3r 132 29 and and CC cord-001734-bbeznd3r 132 30 4 4 CD cord-001734-bbeznd3r 132 31 % % NN cord-001734-bbeznd3r 132 32 helix helix NN cord-001734-bbeznd3r 132 33 secondary secondary JJ cord-001734-bbeznd3r 132 34 structures structure NNS cord-001734-bbeznd3r 132 35 . . . cord-001734-bbeznd3r 133 1 Moreover moreover RB cord-001734-bbeznd3r 133 2 , , , cord-001734-bbeznd3r 133 3 it -PRON- PRP cord-001734-bbeznd3r 133 4 has have VBZ cord-001734-bbeznd3r 133 5 a a DT cord-001734-bbeznd3r 133 6 HSQC HSQC NNP cord-001734-bbeznd3r 133 7 spectrum spectrum NN cord-001734-bbeznd3r 133 8 with with IN cord-001734-bbeznd3r 133 9 very very RB cord-001734-bbeznd3r 133 10 narrow narrow JJ cord-001734-bbeznd3r 133 11 spectral spectral JJ cord-001734-bbeznd3r 133 12 dispersions dispersion NNS cord-001734-bbeznd3r 133 13 at at IN cord-001734-bbeznd3r 133 14 both both DT cord-001734-bbeznd3r 133 15 1 1 CD cord-001734-bbeznd3r 133 16 H h NN cord-001734-bbeznd3r 133 17 ( ( -LRB- cord-001734-bbeznd3r 133 18 ~0.9 ~0.9 CD cord-001734-bbeznd3r 133 19 ppm ppm NN cord-001734-bbeznd3r 133 20 ) ) -RRB- cord-001734-bbeznd3r 133 21 and and CC cord-001734-bbeznd3r 133 22 15 15 CD cord-001734-bbeznd3r 133 23 N n CD cord-001734-bbeznd3r 133 24 ( ( -LRB- cord-001734-bbeznd3r 133 25 ~19 ~19 NFP cord-001734-bbeznd3r 133 26 ppm ppm NN cord-001734-bbeznd3r 133 27 ) ) -RRB- cord-001734-bbeznd3r 133 28 dimensions dimension NNS cord-001734-bbeznd3r 133 29 ( ( -LRB- cord-001734-bbeznd3r 133 30 Fig Fig NNP cord-001734-bbeznd3r 133 31 1B 1b NN cord-001734-bbeznd3r 133 32 ) ) -RRB- cord-001734-bbeznd3r 133 33 , , , cord-001734-bbeznd3r 133 34 further further RB cord-001734-bbeznd3r 133 35 indicating indicate VBG cord-001734-bbeznd3r 133 36 the the DT cord-001734-bbeznd3r 133 37 absence absence NN cord-001734-bbeznd3r 133 38 of of IN cord-001734-bbeznd3r 133 39 tight tight JJ cord-001734-bbeznd3r 133 40 tertiary tertiary JJ cord-001734-bbeznd3r 133 41 packing packing NN cord-001734-bbeznd3r 133 42 . . . cord-001734-bbeznd3r 134 1 Interestingly interestingly RB cord-001734-bbeznd3r 134 2 , , , cord-001734-bbeznd3r 134 3 on on IN cord-001734-bbeznd3r 134 4 the the DT cord-001734-bbeznd3r 134 5 other other JJ cord-001734-bbeznd3r 134 6 hand hand NN cord-001734-bbeznd3r 134 7 , , , cord-001734-bbeznd3r 134 8 NS2B NS2B NNP cord-001734-bbeznd3r 134 9 ( ( -LRB- cord-001734-bbeznd3r 134 10 48 48 CD cord-001734-bbeznd3r 134 11 - - SYM cord-001734-bbeznd3r 134 12 100 100 CD cord-001734-bbeznd3r 134 13 ) ) -RRB- cord-001734-bbeznd3r 134 14 has have VBZ cord-001734-bbeznd3r 134 15 a a DT cord-001734-bbeznd3r 134 16 CD cd NN cord-001734-bbeznd3r 134 17 spectrum spectrum NN cord-001734-bbeznd3r 134 18 with with IN cord-001734-bbeznd3r 134 19 the the DT cord-001734-bbeznd3r 134 20 maximal maximal JJ cord-001734-bbeznd3r 134 21 negative negative JJ cord-001734-bbeznd3r 134 22 signal signal NN cord-001734-bbeznd3r 134 23 at at IN cord-001734-bbeznd3r 134 24 206 206 CD cord-001734-bbeznd3r 134 25 nm nm NN cord-001734-bbeznd3r 134 26 and and CC cord-001734-bbeznd3r 134 27 positive positive JJ cord-001734-bbeznd3r 134 28 signal signal NN cord-001734-bbeznd3r 134 29 at at IN cord-001734-bbeznd3r 134 30 190 190 CD cord-001734-bbeznd3r 134 31 nm nm NN cord-001734-bbeznd3r 134 32 , , , cord-001734-bbeznd3r 134 33 as as RB cord-001734-bbeznd3r 134 34 well well RB cord-001734-bbeznd3r 134 35 as as IN cord-001734-bbeznd3r 134 36 an an DT cord-001734-bbeznd3r 134 37 additional additional JJ cord-001734-bbeznd3r 134 38 negative negative JJ cord-001734-bbeznd3r 134 39 signal signal NN cord-001734-bbeznd3r 134 40 at at IN cord-001734-bbeznd3r 134 41 222 222 CD cord-001734-bbeznd3r 134 42 nm nm NN cord-001734-bbeznd3r 134 43 . . . cord-001734-bbeznd3r 135 1 Further further JJ cord-001734-bbeznd3r 135 2 deconvolution deconvolution NN cord-001734-bbeznd3r 135 3 shows show VBZ cord-001734-bbeznd3r 135 4 that that IN cord-001734-bbeznd3r 135 5 it -PRON- PRP cord-001734-bbeznd3r 135 6 contains contain VBZ cord-001734-bbeznd3r 135 7 32 32 CD cord-001734-bbeznd3r 135 8 % % NN cord-001734-bbeznd3r 135 9 random random JJ cord-001734-bbeznd3r 135 10 coil coil NN cord-001734-bbeznd3r 135 11 , , , cord-001734-bbeznd3r 135 12 24 24 CD cord-001734-bbeznd3r 135 13 % % NN cord-001734-bbeznd3r 135 14 turn turn NN cord-001734-bbeznd3r 135 15 , , , cord-001734-bbeznd3r 135 16 7 7 CD cord-001734-bbeznd3r 135 17 % % NN cord-001734-bbeznd3r 135 18 extended extended JJ cord-001734-bbeznd3r 135 19 strand strand NN cord-001734-bbeznd3r 135 20 and and CC cord-001734-bbeznd3r 135 21 37 37 CD cord-001734-bbeznd3r 135 22 % % NN cord-001734-bbeznd3r 135 23 helix helix NN cord-001734-bbeznd3r 135 24 secondary secondary JJ cord-001734-bbeznd3r 135 25 structures structure NNS cord-001734-bbeznd3r 135 26 . . . cord-001734-bbeznd3r 136 1 Previously Previously NNP cord-001734-bbeznd3r 136 2 NS2B NS2B NNP cord-001734-bbeznd3r 136 3 has have VBZ cord-001734-bbeznd3r 136 4 been be VBN cord-001734-bbeznd3r 136 5 shown show VBN cord-001734-bbeznd3r 136 6 to to TO cord-001734-bbeznd3r 136 7 have have VB cord-001734-bbeznd3r 136 8 slightly slightly RB cord-001734-bbeznd3r 136 9 different different JJ cord-001734-bbeznd3r 136 10 secondary secondary JJ cord-001734-bbeznd3r 136 11 structures structure NNS cord-001734-bbeznd3r 136 12 in in IN cord-001734-bbeznd3r 136 13 the the DT cord-001734-bbeznd3r 136 14 open open JJ cord-001734-bbeznd3r 136 15 [ [ -LRB- cord-001734-bbeznd3r 136 16 7 7 CD cord-001734-bbeznd3r 136 17 ] ] -RRB- cord-001734-bbeznd3r 136 18 and and CC cord-001734-bbeznd3r 136 19 closed close VBD cord-001734-bbeznd3r 136 20 [ [ -LRB- cord-001734-bbeznd3r 136 21 8 8 CD cord-001734-bbeznd3r 136 22 ] ] -RRB- cord-001734-bbeznd3r 136 23 states state NNS cord-001734-bbeznd3r 136 24 of of IN cord-001734-bbeznd3r 136 25 the the DT cord-001734-bbeznd3r 136 26 NS2B NS2B NNP cord-001734-bbeznd3r 136 27 - - HYPH cord-001734-bbeznd3r 136 28 NS3pro NS3pro NNP cord-001734-bbeznd3r 136 29 complexes complex NNS cord-001734-bbeznd3r 136 30 . . . cord-001734-bbeznd3r 137 1 In in IN cord-001734-bbeznd3r 137 2 the the DT cord-001734-bbeznd3r 137 3 open open JJ cord-001734-bbeznd3r 137 4 ( ( -LRB- cord-001734-bbeznd3r 137 5 inactive inactive JJ cord-001734-bbeznd3r 137 6 ) ) -RRB- cord-001734-bbeznd3r 137 7 state state NN cord-001734-bbeznd3r 137 8 ( ( -LRB- cord-001734-bbeznd3r 137 9 PDB PDB NNP cord-001734-bbeznd3r 137 10 ID ID NNP cord-001734-bbeznd3r 137 11 : : : cord-001734-bbeznd3r 137 12 2FOM 2fom LS cord-001734-bbeznd3r 137 13 ) ) -RRB- cord-001734-bbeznd3r 137 14 , , , cord-001734-bbeznd3r 137 15 NS2B NS2B NNP cord-001734-bbeznd3r 137 16 has have VBZ cord-001734-bbeznd3r 137 17 a a DT cord-001734-bbeznd3r 137 18 short short JJ cord-001734-bbeznd3r 137 19 helix helix NN cord-001734-bbeznd3r 137 20 over over IN cord-001734-bbeznd3r 137 21 residues residue NNS cord-001734-bbeznd3r 137 22 Glu62-Gly69 glu62-gly69 VBP cord-001734-bbeznd3r 137 23 while while IN cord-001734-bbeznd3r 137 24 in in IN cord-001734-bbeznd3r 137 25 the the DT cord-001734-bbeznd3r 137 26 closed closed JJ cord-001734-bbeznd3r 137 27 ( ( -LRB- cord-001734-bbeznd3r 137 28 active active JJ cord-001734-bbeznd3r 137 29 ) ) -RRB- cord-001734-bbeznd3r 137 30 state state NN cord-001734-bbeznd3r 137 31 ( ( -LRB- cord-001734-bbeznd3r 137 32 PDB PDB NNP cord-001734-bbeznd3r 137 33 ID ID NNP cord-001734-bbeznd3r 137 34 : : : cord-001734-bbeznd3r 137 35 3U1I 3u1i CD cord-001734-bbeznd3r 137 36 ) ) -RRB- cord-001734-bbeznd3r 137 37 , , , cord-001734-bbeznd3r 137 38 the the DT cord-001734-bbeznd3r 137 39 NS2B NS2B NNP cord-001734-bbeznd3r 137 40 only only RB cord-001734-bbeznd3r 137 41 has have VBZ cord-001734-bbeznd3r 137 42 β β NN cord-001734-bbeznd3r 137 43 - - HYPH cord-001734-bbeznd3r 137 44 strands strand NNS cord-001734-bbeznd3r 137 45 but but CC cord-001734-bbeznd3r 137 46 no no DT cord-001734-bbeznd3r 137 47 helical helical JJ cord-001734-bbeznd3r 137 48 segment segment NN cord-001734-bbeznd3r 137 49 . . . cord-001734-bbeznd3r 138 1 Therefore therefore RB cord-001734-bbeznd3r 138 2 , , , cord-001734-bbeznd3r 138 3 it -PRON- PRP cord-001734-bbeznd3r 138 4 is be VBZ cord-001734-bbeznd3r 138 5 possible possible JJ cord-001734-bbeznd3r 138 6 that that IN cord-001734-bbeznd3r 138 7 upon upon IN cord-001734-bbeznd3r 138 8 losing lose VBG cord-001734-bbeznd3r 138 9 tertiary tertiary JJ cord-001734-bbeznd3r 138 10 contacts contact NNS cord-001734-bbeznd3r 138 11 with with IN cord-001734-bbeznd3r 138 12 the the DT cord-001734-bbeznd3r 138 13 NS3pro NS3pro NNP cord-001734-bbeznd3r 138 14 domain domain NN cord-001734-bbeznd3r 138 15 , , , cord-001734-bbeznd3r 138 16 the the DT cord-001734-bbeznd3r 138 17 free free JJ cord-001734-bbeznd3r 138 18 - - HYPH cord-001734-bbeznd3r 138 19 state state NN cord-001734-bbeznd3r 138 20 NS2B NS2B NNP cord-001734-bbeznd3r 138 21 has have VBZ cord-001734-bbeznd3r 138 22 more more RBR cord-001734-bbeznd3r 138 23 helical helical JJ cord-001734-bbeznd3r 138 24 conformations conformation NNS cord-001734-bbeznd3r 138 25 populated populate VBN cord-001734-bbeznd3r 138 26 over over IN cord-001734-bbeznd3r 138 27 residues residue NNS cord-001734-bbeznd3r 138 28 Glu62-Gly69 glu62-gly69 RB cord-001734-bbeznd3r 138 29 , , , cord-001734-bbeznd3r 138 30 or or CC cord-001734-bbeznd3r 138 31 / / SYM cord-001734-bbeznd3r 138 32 and and CC cord-001734-bbeznd3r 138 33 even even RB cord-001734-bbeznd3r 138 34 has have VBZ cord-001734-bbeznd3r 138 35 helical helical JJ cord-001734-bbeznd3r 138 36 conformations conformation NNS cord-001734-bbeznd3r 138 37 populated populate VBN cord-001734-bbeznd3r 138 38 over over IN cord-001734-bbeznd3r 138 39 residues residue NNS cord-001734-bbeznd3r 138 40 which which WDT cord-001734-bbeznd3r 138 41 adopt adopt VBP cord-001734-bbeznd3r 138 42 βstrands βstrand NNS cord-001734-bbeznd3r 138 43 in in IN cord-001734-bbeznd3r 138 44 the the DT cord-001734-bbeznd3r 138 45 NS2B NS2B NNP cord-001734-bbeznd3r 138 46 - - HYPH cord-001734-bbeznd3r 138 47 NS3pro NS3pro NNP cord-001734-bbeznd3r 138 48 complexes complex NNS cord-001734-bbeznd3r 138 49 . . . cord-001734-bbeznd3r 139 1 Indeed indeed RB cord-001734-bbeznd3r 139 2 , , , cord-001734-bbeznd3r 139 3 we -PRON- PRP cord-001734-bbeznd3r 139 4 previously previously RB cord-001734-bbeznd3r 139 5 observed observe VBD cord-001734-bbeznd3r 139 6 that that IN cord-001734-bbeznd3r 139 7 upon upon IN cord-001734-bbeznd3r 139 8 disrupting disrupt VBG cord-001734-bbeznd3r 139 9 the the DT cord-001734-bbeznd3r 139 10 all all DT cord-001734-bbeznd3r 139 11 β β NN cord-001734-bbeznd3r 139 12 - - HYPH cord-001734-bbeznd3r 139 13 barrel barrel NN cord-001734-bbeznd3r 139 14 native native JJ cord-001734-bbeznd3r 139 15 fold fold NN cord-001734-bbeznd3r 139 16 , , , cord-001734-bbeznd3r 139 17 the the DT cord-001734-bbeznd3r 139 18 mutants mutant NNS cord-001734-bbeznd3r 139 19 of of IN cord-001734-bbeznd3r 139 20 a a DT cord-001734-bbeznd3r 139 21 SH3 SH3 NNP cord-001734-bbeznd3r 139 22 domain domain NN cord-001734-bbeznd3r 139 23 became become VBD cord-001734-bbeznd3r 139 24 highly highly RB cord-001734-bbeznd3r 139 25 helical helical JJ cord-001734-bbeznd3r 139 26 even even RB cord-001734-bbeznd3r 139 27 over over IN cord-001734-bbeznd3r 139 28 the the DT cord-001734-bbeznd3r 139 29 residues residue NNS cord-001734-bbeznd3r 139 30 which which WDT cord-001734-bbeznd3r 139 31 adopt adopt VBP cord-001734-bbeznd3r 139 32 β β NN cord-001734-bbeznd3r 139 33 - - HYPH cord-001734-bbeznd3r 139 34 strands strand NNS cord-001734-bbeznd3r 139 35 in in IN cord-001734-bbeznd3r 139 36 the the DT cord-001734-bbeznd3r 139 37 native native JJ cord-001734-bbeznd3r 139 38 fold fold NN cord-001734-bbeznd3r 139 39 [ [ -LRB- cord-001734-bbeznd3r 139 40 31 31 CD cord-001734-bbeznd3r 139 41 ] ] -RRB- cord-001734-bbeznd3r 139 42 . . . cord-001734-bbeznd3r 140 1 Unfortunately unfortunately RB cord-001734-bbeznd3r 140 2 , , , cord-001734-bbeznd3r 140 3 HSQC HSQC NNP cord-001734-bbeznd3r 140 4 peaks peak NNS cord-001734-bbeznd3r 140 5 of of IN cord-001734-bbeznd3r 140 6 the the DT cord-001734-bbeznd3r 140 7 NS2B NS2B NNP cord-001734-bbeznd3r 140 8 ( ( -LRB- cord-001734-bbeznd3r 140 9 48 48 CD cord-001734-bbeznd3r 140 10 - - SYM cord-001734-bbeznd3r 140 11 100 100 CD cord-001734-bbeznd3r 140 12 ) ) -RRB- cord-001734-bbeznd3r 140 13 are be VBP cord-001734-bbeznd3r 140 14 much much RB cord-001734-bbeznd3r 140 15 more more RBR cord-001734-bbeznd3r 140 16 broadened broaden VBN cord-001734-bbeznd3r 140 17 than than IN cord-001734-bbeznd3r 140 18 those those DT cord-001734-bbeznd3r 140 19 of of IN cord-001734-bbeznd3r 140 20 NS3pro NS3pro NNP cord-001734-bbeznd3r 140 21 , , , cord-001734-bbeznd3r 140 22 implying imply VBG cord-001734-bbeznd3r 140 23 that that IN cord-001734-bbeznd3r 140 24 the the DT cord-001734-bbeznd3r 140 25 isolated isolate VBN cord-001734-bbeznd3r 140 26 NS2B NS2B NNS cord-001734-bbeznd3r 140 27 ( ( -LRB- cord-001734-bbeznd3r 140 28 48 48 CD cord-001734-bbeznd3r 140 29 - - SYM cord-001734-bbeznd3r 140 30 100 100 CD cord-001734-bbeznd3r 140 31 ) ) -RRB- cord-001734-bbeznd3r 140 32 has have VBZ cord-001734-bbeznd3r 140 33 dynamic dynamic JJ cord-001734-bbeznd3r 140 34 aggregation aggregation NN cord-001734-bbeznd3r 140 35 or or CC cord-001734-bbeznd3r 140 36 / / SYM cord-001734-bbeznd3r 140 37 and and CC cord-001734-bbeznd3r 140 38 conformational conformational JJ cord-001734-bbeznd3r 140 39 exchanges exchange NNS cord-001734-bbeznd3r 140 40 on on IN cord-001734-bbeznd3r 140 41 the the DT cord-001734-bbeznd3r 140 42 μs μs NNP cord-001734-bbeznd3r 140 43 - - HYPH cord-001734-bbeznd3r 140 44 ms ms NNP cord-001734-bbeznd3r 140 45 time time NN cord-001734-bbeznd3r 140 46 scale scale NN cord-001734-bbeznd3r 140 47 , , , cord-001734-bbeznd3r 140 48 thus thus RB cord-001734-bbeznd3r 140 49 preventing prevent VBG cord-001734-bbeznd3r 140 50 from from IN cord-001734-bbeznd3r 140 51 further further JJ cord-001734-bbeznd3r 140 52 high high JJ cord-001734-bbeznd3r 140 53 - - HYPH cord-001734-bbeznd3r 140 54 resolution resolution NN cord-001734-bbeznd3r 140 55 NMR NMR NNP cord-001734-bbeznd3r 140 56 studies study NNS cord-001734-bbeznd3r 140 57 . . . cord-001734-bbeznd3r 141 1 Despite despite IN cord-001734-bbeznd3r 141 2 its -PRON- PRP$ cord-001734-bbeznd3r 141 3 narrow narrow JJ cord-001734-bbeznd3r 141 4 spectral spectral JJ cord-001734-bbeznd3r 141 5 dispersions dispersion NNS cord-001734-bbeznd3r 141 6 , , , cord-001734-bbeznd3r 141 7 we -PRON- PRP cord-001734-bbeznd3r 141 8 have have VBP cord-001734-bbeznd3r 141 9 successfully successfully RB cord-001734-bbeznd3r 141 10 assigned assign VBN cord-001734-bbeznd3r 141 11 NMR NMR NNP cord-001734-bbeznd3r 141 12 resonances resonance NNS cord-001734-bbeznd3r 141 13 of of IN cord-001734-bbeznd3r 141 14 almost almost RB cord-001734-bbeznd3r 141 15 all all DT cord-001734-bbeznd3r 141 16 non non JJ cord-001734-bbeznd3r 141 17 - - JJ cord-001734-bbeznd3r 141 18 proline proline JJ cord-001734-bbeznd3r 141 19 residues residue NNS cord-001734-bbeznd3r 141 20 of of IN cord-001734-bbeznd3r 141 21 the the DT cord-001734-bbeznd3r 141 22 172-residue 172-residue CD cord-001734-bbeznd3r 141 23 NS3pro NS3pro NNP cord-001734-bbeznd3r 141 24 ( ( -LRB- cord-001734-bbeznd3r 141 25 14 14 CD cord-001734-bbeznd3r 141 26 - - SYM cord-001734-bbeznd3r 141 27 185 185 CD cord-001734-bbeznd3r 141 28 ) ) -RRB- cord-001734-bbeznd3r 141 29 by by IN cord-001734-bbeznd3r 141 30 analyzing analyze VBG cord-001734-bbeznd3r 141 31 NMR NMR NNP cord-001734-bbeznd3r 141 32 spectra spectrum NNS cord-001734-bbeznd3r 141 33 including include VBG cord-001734-bbeznd3r 141 34 HN(CO)CACB HN(CO)CACB NNP cord-001734-bbeznd3r 141 35 / / SYM cord-001734-bbeznd3r 141 36 CBCA(CO)HN CBCA(CO)HN NNP cord-001734-bbeznd3r 141 37 and and CC cord-001734-bbeznd3r 141 38 HSQC HSQC NNP cord-001734-bbeznd3r 141 39 - - HYPH cord-001734-bbeznd3r 141 40 TOCSY TOCSY NNP cord-001734-bbeznd3r 141 41 / / SYM cord-001734-bbeznd3r 141 42 HSQC HSQC NNP cord-001734-bbeznd3r 141 43 - - HYPH cord-001734-bbeznd3r 141 44 NOESY NOESY NNP cord-001734-bbeznd3r 141 45 . . . cord-001734-bbeznd3r 142 1 Fig Fig NNP cord-001734-bbeznd3r 142 2 1C 1C NNP cord-001734-bbeznd3r 142 3 pres pres NNP cord-001734-bbeznd3r 142 4 ents ents NNP cord-001734-bbeznd3r 143 1 the the DT cord-001734-bbeznd3r 143 2 obtained obtain VBN cord-001734-bbeznd3r 143 3 ( ( -LRB- cord-001734-bbeznd3r 143 4 ΔCα δcα NN cord-001734-bbeznd3r 143 5 - - HYPH cord-001734-bbeznd3r 143 6 ΔCβ ΔCβ NNP cord-001734-bbeznd3r 143 7 ) ) -RRB- cord-001734-bbeznd3r 143 8 chemical chemical NN cord-001734-bbeznd3r 143 9 shifts shift NNS cord-001734-bbeznd3r 143 10 , , , cord-001734-bbeznd3r 143 11 which which WDT cord-001734-bbeznd3r 143 12 is be VBZ cord-001734-bbeznd3r 143 13 a a DT cord-001734-bbeznd3r 143 14 sensitive sensitive JJ cord-001734-bbeznd3r 143 15 indicator indicator NN cord-001734-bbeznd3r 143 16 of of IN cord-001734-bbeznd3r 143 17 the the DT cord-001734-bbeznd3r 143 18 residual residual JJ cord-001734-bbeznd3r 143 19 secondary secondary JJ cord-001734-bbeznd3r 143 20 structures structure NNS cord-001734-bbeznd3r 143 21 in in IN cord-001734-bbeznd3r 143 22 disordered disordered JJ cord-001734-bbeznd3r 143 23 proteins protein NNS cord-001734-bbeznd3r 143 24 [ [ -LRB- cord-001734-bbeznd3r 143 25 32 32 CD cord-001734-bbeznd3r 143 26 ] ] -RRB- cord-001734-bbeznd3r 143 27 . . . cord-001734-bbeznd3r 144 1 Previously previously RB cord-001734-bbeznd3r 144 2 , , , cord-001734-bbeznd3r 144 3 by by IN cord-001734-bbeznd3r 144 4 analyzing analyze VBG cord-001734-bbeznd3r 144 5 NMR NMR NNP cord-001734-bbeznd3r 144 6 chemical chemical NN cord-001734-bbeznd3r 144 7 shifts shift NNS cord-001734-bbeznd3r 144 8 , , , cord-001734-bbeznd3r 144 9 the the DT cord-001734-bbeznd3r 144 10 NS2B NS2B NNP cord-001734-bbeznd3r 144 11 ( ( -LRB- cord-001734-bbeznd3r 144 12 48 48 CD cord-001734-bbeznd3r 144 13 - - SYM cord-001734-bbeznd3r 144 14 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 144 15 ( ( -LRB- cord-001734-bbeznd3r 144 16 14 14 CD cord-001734-bbeznd3r 144 17 - - SYM cord-001734-bbeznd3r 144 18 185 185 CD cord-001734-bbeznd3r 144 19 ) ) -RRB- cord-001734-bbeznd3r 144 20 complex complex NN cord-001734-bbeznd3r 144 21 was be VBD cord-001734-bbeznd3r 144 22 characterized characterize VBN cord-001734-bbeznd3r 144 23 to to TO cord-001734-bbeznd3r 144 24 adopt adopt VB cord-001734-bbeznd3r 144 25 the the DT cord-001734-bbeznd3r 144 26 same same JJ cord-001734-bbeznd3r 144 27 structure structure NN cord-001734-bbeznd3r 144 28 in in IN cord-001734-bbeznd3r 144 29 solution solution NN cord-001734-bbeznd3r 144 30 and and CC cord-001734-bbeznd3r 144 31 crystal crystal NN cord-001734-bbeznd3r 144 32 [ [ -LRB- cord-001734-bbeznd3r 144 33 10 10 CD cord-001734-bbeznd3r 144 34 ] ] -RRB- cord-001734-bbeznd3r 144 35 . . . cord-001734-bbeznd3r 145 1 Here here RB cord-001734-bbeznd3r 145 2 we -PRON- PRP cord-001734-bbeznd3r 145 3 downloaded download VBD cord-001734-bbeznd3r 145 4 the the DT cord-001734-bbeznd3r 145 5 chemical chemical NN cord-001734-bbeznd3r 145 6 shifts shift NNS cord-001734-bbeznd3r 145 7 of of IN cord-001734-bbeznd3r 145 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 145 9 in in IN cord-001734-bbeznd3r 145 10 complex complex NN cord-001734-bbeznd3r 145 11 with with IN cord-001734-bbeznd3r 145 12 NS2B NS2B NNP cord-001734-bbeznd3r 145 13 ( ( -LRB- cord-001734-bbeznd3r 145 14 BMRB BMRB NNP cord-001734-bbeznd3r 145 15 ID ID NNP cord-001734-bbeznd3r 145 16 of of IN cord-001734-bbeznd3r 145 17 19080 19080 CD cord-001734-bbeznd3r 145 18 ) ) -RRB- cord-001734-bbeznd3r 145 19 and and CC cord-001734-bbeznd3r 145 20 included include VBD cord-001734-bbeznd3r 145 21 them -PRON- PRP cord-001734-bbeznd3r 145 22 ( ( -LRB- cord-001734-bbeznd3r 145 23 grey grey JJ cord-001734-bbeznd3r 145 24 bars bar NNS cord-001734-bbeznd3r 145 25 in in IN cord-001734-bbeznd3r 145 26 Fig Fig NNP cord-001734-bbeznd3r 145 27 1C 1c NN cord-001734-bbeznd3r 145 28 ) ) -RRB- cord-001734-bbeznd3r 145 29 in in IN cord-001734-bbeznd3r 145 30 parallel parallel NN cord-001734-bbeznd3r 145 31 to to IN cord-001734-bbeznd3r 145 32 those those DT cord-001734-bbeznd3r 145 33 of of IN cord-001734-bbeznd3r 145 34 the the DT cord-001734-bbeznd3r 145 35 isolated isolated JJ cord-001734-bbeznd3r 145 36 NS3pro ns3pro NN cord-001734-bbeznd3r 145 37 ( ( -LRB- cord-001734-bbeznd3r 145 38 red red JJ cord-001734-bbeznd3r 145 39 bars bar NNS cord-001734-bbeznd3r 145 40 in in IN cord-001734-bbeznd3r 145 41 Fig Fig NNP cord-001734-bbeznd3r 145 42 1C 1c NN cord-001734-bbeznd3r 145 43 ) ) -RRB- cord-001734-bbeznd3r 145 44 for for IN cord-001734-bbeznd3r 145 45 comparison comparison NN cord-001734-bbeznd3r 145 46 . . . cord-001734-bbeznd3r 146 1 The the DT cord-001734-bbeznd3r 146 2 NS3pro NS3pro NNP cord-001734-bbeznd3r 146 3 domain domain NN cord-001734-bbeznd3r 146 4 in in IN cord-001734-bbeznd3r 146 5 complex complex NN cord-001734-bbeznd3r 146 6 with with IN cord-001734-bbeznd3r 146 7 NS2B NS2B NNP cord-001734-bbeznd3r 146 8 has have VBZ cord-001734-bbeznd3r 146 9 very very RB cord-001734-bbeznd3r 146 10 large large JJ cord-001734-bbeznd3r 146 11 ( ( -LRB- cord-001734-bbeznd3r 146 12 ΔCα δcα NN cord-001734-bbeznd3r 146 13 - - HYPH cord-001734-bbeznd3r 146 14 ΔCβ ΔCβ NNS cord-001734-bbeznd3r 146 15 ) ) -RRB- cord-001734-bbeznd3r 146 16 deviations deviation NNS cord-001734-bbeznd3r 146 17 characteristic characteristic JJ cord-001734-bbeznd3r 146 18 of of IN cord-001734-bbeznd3r 146 19 a a DT cord-001734-bbeznd3r 146 20 well well RB cord-001734-bbeznd3r 146 21 - - HYPH cord-001734-bbeznd3r 146 22 folded fold VBN cord-001734-bbeznd3r 146 23 protein protein NN cord-001734-bbeznd3r 146 24 . . . cord-001734-bbeznd3r 147 1 By by IN cord-001734-bbeznd3r 147 2 contrast contrast NN cord-001734-bbeznd3r 147 3 , , , cord-001734-bbeznd3r 147 4 the the DT cord-001734-bbeznd3r 147 5 isolated isolated JJ cord-001734-bbeznd3r 147 6 NS3pro ns3pro NN cord-001734-bbeznd3r 147 7 has have VBZ cord-001734-bbeznd3r 147 8 dramatically dramatically RB cord-001734-bbeznd3r 147 9 decreased decrease VBN cord-001734-bbeznd3r 147 10 ( ( -LRB- cord-001734-bbeznd3r 147 11 ΔCα δcα NN cord-001734-bbeznd3r 147 12 - - HYPH cord-001734-bbeznd3r 147 13 ΔCβ ΔCβ NNP cord-001734-bbeznd3r 147 14 ) ) -RRB- cord-001734-bbeznd3r 147 15 over over IN cord-001734-bbeznd3r 147 16 the the DT cord-001734-bbeznd3r 147 17 whole whole JJ cord-001734-bbeznd3r 147 18 sequence sequence NN cord-001734-bbeznd3r 147 19 ( ( -LRB- cord-001734-bbeznd3r 147 20 Fig Fig NNP cord-001734-bbeznd3r 147 21 1C 1c NN cord-001734-bbeznd3r 147 22 ) ) -RRB- cord-001734-bbeznd3r 147 23 . . . cord-001734-bbeznd3r 148 1 For for IN cord-001734-bbeznd3r 148 2 example example NN cord-001734-bbeznd3r 148 3 , , , cord-001734-bbeznd3r 148 4 many many JJ cord-001734-bbeznd3r 148 5 NS3pro ns3pro NN cord-001734-bbeznd3r 148 6 residues residue NNS cord-001734-bbeznd3r 148 7 in in IN cord-001734-bbeznd3r 148 8 the the DT cord-001734-bbeznd3r 148 9 complex complex NN cord-001734-bbeznd3r 148 10 have have VBP cord-001734-bbeznd3r 148 11 the the DT cord-001734-bbeznd3r 148 12 absolute absolute JJ cord-001734-bbeznd3r 148 13 values value NNS cord-001734-bbeznd3r 148 14 of of IN cord-001734-bbeznd3r 148 15 ( ( -LRB- cord-001734-bbeznd3r 148 16 ΔCα δcα NN cord-001734-bbeznd3r 148 17 - - HYPH cord-001734-bbeznd3r 148 18 ΔCβ δcβ NN cord-001734-bbeznd3r 148 19 ) ) -RRB- cord-001734-bbeznd3r 148 20 > > XX cord-001734-bbeznd3r 149 1 4 4 CD cord-001734-bbeznd3r 149 2 ppm ppm NN cord-001734-bbeznd3r 149 3 , , , cord-001734-bbeznd3r 149 4 while while IN cord-001734-bbeznd3r 149 5 all all DT cord-001734-bbeznd3r 149 6 isolated isolate VBN cord-001734-bbeznd3r 149 7 NS3pro ns3pro NN cord-001734-bbeznd3r 149 8 residues residue NNS cord-001734-bbeznd3r 149 9 have have VBP cord-001734-bbeznd3r 149 10 the the DT cord-001734-bbeznd3r 149 11 absolute absolute JJ cord-001734-bbeznd3r 149 12 values value NNS cord-001734-bbeznd3r 149 13 of of IN cord-001734-bbeznd3r 149 14 ( ( -LRB- cord-001734-bbeznd3r 149 15 ΔCα δcα NN cord-001734-bbeznd3r 149 16 - - HYPH cord-001734-bbeznd3r 149 17 ΔCβ ΔCβ NNP cord-001734-bbeznd3r 149 18 ) ) -RRB- cord-001734-bbeznd3r 150 1 < < XX cord-001734-bbeznd3r 151 1 2 2 CD cord-001734-bbeznd3r 151 2 ppm ppm NN cord-001734-bbeznd3r 151 3 . . . cord-001734-bbeznd3r 152 1 Interestingly interestingly RB cord-001734-bbeznd3r 152 2 , , , cord-001734-bbeznd3r 152 3 many many JJ cord-001734-bbeznd3r 152 4 residues residue NNS cord-001734-bbeznd3r 152 5 of of IN cord-001734-bbeznd3r 152 6 the the DT cord-001734-bbeznd3r 152 7 isolated isolated JJ cord-001734-bbeznd3r 152 8 NS3pro ns3pro NN cord-001734-bbeznd3r 152 9 still still RB cord-001734-bbeznd3r 152 10 have have VBP cord-001734-bbeznd3r 152 11 the the DT cord-001734-bbeznd3r 152 12 ( ( -LRB- cord-001734-bbeznd3r 152 13 ΔCα δcα NN cord-001734-bbeznd3r 152 14 - - HYPH cord-001734-bbeznd3r 152 15 ΔCβ ΔCβ NNS cord-001734-bbeznd3r 152 16 ) ) -RRB- cord-001734-bbeznd3r 152 17 patterns pattern NNS cord-001734-bbeznd3r 152 18 similar similar JJ cord-001734-bbeznd3r 152 19 to to IN cord-001734-bbeznd3r 152 20 those those DT cord-001734-bbeznd3r 152 21 in in IN cord-001734-bbeznd3r 152 22 the the DT cord-001734-bbeznd3r 152 23 complex complex NN cord-001734-bbeznd3r 152 24 , , , cord-001734-bbeznd3r 152 25 implying imply VBG cord-001734-bbeznd3r 152 26 that that IN cord-001734-bbeznd3r 152 27 similar similar JJ cord-001734-bbeznd3r 152 28 secondary secondary JJ cord-001734-bbeznd3r 152 29 structures structure NNS cord-001734-bbeznd3r 152 30 might may MD cord-001734-bbeznd3r 152 31 be be VB cord-001734-bbeznd3r 152 32 weakly weakly RB cord-001734-bbeznd3r 152 33 populated populated JJ cord-001734-bbeznd3r 152 34 over over IN cord-001734-bbeznd3r 152 35 these these DT cord-001734-bbeznd3r 152 36 residues residue NNS cord-001734-bbeznd3r 152 37 . . . cord-001734-bbeznd3r 153 1 Indeed indeed RB cord-001734-bbeznd3r 153 2 , , , cord-001734-bbeznd3r 153 3 we -PRON- PRP cord-001734-bbeznd3r 153 4 further further RB cord-001734-bbeznd3r 153 5 analysed analyse VBD cord-001734-bbeznd3r 153 6 the the DT cord-001734-bbeznd3r 153 7 NH NH NNP cord-001734-bbeznd3r 153 8 , , , cord-001734-bbeznd3r 153 9 15 15 CD cord-001734-bbeznd3r 153 10 N n CD cord-001734-bbeznd3r 153 11 , , , cord-001734-bbeznd3r 153 12 Cα Cα NNP cord-001734-bbeznd3r 153 13 and and CC cord-001734-bbeznd3r 153 14 Cβ Cβ NNP cord-001734-bbeznd3r 153 15 chemical chemical NN cord-001734-bbeznd3r 153 16 shifts shift NNS cord-001734-bbeznd3r 153 17 by by IN cord-001734-bbeznd3r 153 18 Delta2D delta2d NN cord-001734-bbeznd3r 153 19 program program NN cord-001734-bbeznd3r 153 20 [ [ -LRB- cord-001734-bbeznd3r 153 21 26 26 CD cord-001734-bbeznd3r 153 22 ] ] -RRB- cord-001734-bbeznd3r 153 23 and and CC cord-001734-bbeznd3r 153 24 the the DT cord-001734-bbeznd3r 153 25 results result NNS cord-001734-bbeznd3r 153 26 indicate indicate VBP cord-001734-bbeznd3r 153 27 that that IN cord-001734-bbeznd3r 153 28 the the DT cord-001734-bbeznd3r 153 29 isolated isolated JJ cord-001734-bbeznd3r 153 30 NS3pro ns3pro NN cord-001734-bbeznd3r 153 31 adopts adopt VBZ cord-001734-bbeznd3r 153 32 highly highly RB cord-001734-bbeznd3r 153 33 - - HYPH cord-001734-bbeznd3r 153 34 populated populated JJ cord-001734-bbeznd3r 153 35 random random JJ cord-001734-bbeznd3r 153 36 coil coil NN cord-001734-bbeznd3r 153 37 conformations conformation NNS cord-001734-bbeznd3r 153 38 over over IN cord-001734-bbeznd3r 153 39 the the DT cord-001734-bbeznd3r 153 40 whole whole JJ cord-001734-bbeznd3r 153 41 sequence sequence NN cord-001734-bbeznd3r 153 42 . . . cord-001734-bbeznd3r 154 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 154 2 , , , cord-001734-bbeznd3r 154 3 over over IN cord-001734-bbeznd3r 154 4 some some DT cord-001734-bbeznd3r 154 5 short short JJ cord-001734-bbeznd3r 154 6 segments segment NNS cord-001734-bbeznd3r 154 7 , , , cord-001734-bbeznd3r 154 8 the the DT cord-001734-bbeznd3r 154 9 extended extended JJ cord-001734-bbeznd3r 154 10 strand strand NN cord-001734-bbeznd3r 154 11 conformation conformation NN cord-001734-bbeznd3r 154 12 is be VBZ cord-001734-bbeznd3r 154 13 also also RB cord-001734-bbeznd3r 154 14 populated populated JJ cord-001734-bbeznd3r 154 15 to to IN cord-001734-bbeznd3r 154 16 some some DT cord-001734-bbeznd3r 154 17 degree degree NN cord-001734-bbeznd3r 154 18 but but CC cord-001734-bbeznd3r 154 19 the the DT cord-001734-bbeznd3r 154 20 helix helix NN cord-001734-bbeznd3r 154 21 conformation conformation NN cord-001734-bbeznd3r 154 22 is be VBZ cord-001734-bbeznd3r 154 23 almost almost RB cord-001734-bbeznd3r 154 24 lacking lacking JJ cord-001734-bbeznd3r 154 25 ( ( -LRB- cord-001734-bbeznd3r 154 26 Fig Fig NNP cord-001734-bbeznd3r 154 27 1D 1d CD cord-001734-bbeznd3r 154 28 ) ) -RRB- cord-001734-bbeznd3r 154 29 , , , cord-001734-bbeznd3r 154 30 completely completely RB cord-001734-bbeznd3r 154 31 consistent consistent JJ cord-001734-bbeznd3r 154 32 with with IN cord-001734-bbeznd3r 154 33 the the DT cord-001734-bbeznd3r 154 34 deconvolution deconvolution NN cord-001734-bbeznd3r 154 35 result result NN cord-001734-bbeznd3r 154 36 of of IN cord-001734-bbeznd3r 154 37 the the DT cord-001734-bbeznd3r 154 38 CD cd NN cord-001734-bbeznd3r 154 39 spectrum spectrum NN cord-001734-bbeznd3r 154 40 . . . cord-001734-bbeznd3r 155 1 Furthermore furthermore RB cord-001734-bbeznd3r 155 2 , , , cord-001734-bbeznd3r 155 3 as as IN cord-001734-bbeznd3r 155 4 seen see VBN cord-001734-bbeznd3r 155 5 in in IN cord-001734-bbeznd3r 155 6 Fig Fig NNP cord-001734-bbeznd3r 155 7 1E 1e CD cord-001734-bbeznd3r 155 8 , , , cord-001734-bbeznd3r 155 9 only only RB cord-001734-bbeznd3r 155 10 sequential sequential JJ cord-001734-bbeznd3r 155 11 NOEs no NNS cord-001734-bbeznd3r 155 12 d d NNP cord-001734-bbeznd3r 155 13 NN(i NN(i NNP cord-001734-bbeznd3r 155 14 , , , cord-001734-bbeznd3r 155 15 i+1 i+1 NN cord-001734-bbeznd3r 155 16 ) ) -RRB- cord-001734-bbeznd3r 155 17 and and CC cord-001734-bbeznd3r 155 18 d d NNP cord-001734-bbeznd3r 155 19 αN(i αN(i NNP cord-001734-bbeznd3r 155 20 , , , cord-001734-bbeznd3r 155 21 i+1 i+1 , cord-001734-bbeznd3r 155 22 ) ) -RRB- cord-001734-bbeznd3r 155 23 manifest manifest VB cord-001734-bbeznd3r 155 24 over over IN cord-001734-bbeznd3r 155 25 the the DT cord-001734-bbeznd3r 155 26 majority majority NN cord-001734-bbeznd3r 155 27 of of IN cord-001734-bbeznd3r 155 28 the the DT cord-001734-bbeznd3r 155 29 sequence sequence NN cord-001734-bbeznd3r 155 30 , , , cord-001734-bbeznd3r 155 31 clearly clearly RB cord-001734-bbeznd3r 155 32 indicating indicate VBG cord-001734-bbeznd3r 155 33 that that IN cord-001734-bbeznd3r 155 34 the the DT cord-001734-bbeznd3r 155 35 isolated isolated JJ cord-001734-bbeznd3r 155 36 NS3pro NS3pro NNP cord-001734-bbeznd3r 155 37 has have VBZ cord-001734-bbeznd3r 155 38 no no DT cord-001734-bbeznd3r 155 39 stable stable JJ cord-001734-bbeznd3r 155 40 secondary secondary JJ cord-001734-bbeznd3r 155 41 structures structure NNS cord-001734-bbeznd3r 155 42 and and CC cord-001734-bbeznd3r 155 43 its -PRON- PRP$ cord-001734-bbeznd3r 155 44 NMR NMR NNP cord-001734-bbeznd3r 155 45 conformation conformation NN cord-001734-bbeznd3r 156 1 represents represent VBZ cord-001734-bbeznd3r 156 2 an an DT cord-001734-bbeznd3r 156 3 average average NN cord-001734-bbeznd3r 156 4 of of IN cord-001734-bbeznd3r 156 5 an an DT cord-001734-bbeznd3r 156 6 ensemble ensemble NN cord-001734-bbeznd3r 156 7 of of IN cord-001734-bbeznd3r 156 8 different different JJ cord-001734-bbeznd3r 156 9 structures structure NNS cord-001734-bbeznd3r 156 10 . . . cord-001734-bbeznd3r 157 1 Taken take VBN cord-001734-bbeznd3r 157 2 together together RB cord-001734-bbeznd3r 157 3 , , , cord-001734-bbeznd3r 157 4 CD CD NNP cord-001734-bbeznd3r 157 5 and and CC cord-001734-bbeznd3r 157 6 NMR NMR NNP cord-001734-bbeznd3r 157 7 results result NNS cord-001734-bbeznd3r 157 8 define define VBP cord-001734-bbeznd3r 157 9 the the DT cord-001734-bbeznd3r 157 10 172-residue 172-residue CD cord-001734-bbeznd3r 157 11 NS3pro ns3pro NN cord-001734-bbeznd3r 157 12 domain domain NN cord-001734-bbeznd3r 157 13 to to TO cord-001734-bbeznd3r 157 14 be be VB cord-001734-bbeznd3r 157 15 an an DT cord-001734-bbeznd3r 157 16 intrinsically intrinsically RB cord-001734-bbeznd3r 157 17 disordered disordered JJ cord-001734-bbeznd3r 157 18 protein protein NN cord-001734-bbeznd3r 157 19 which which WDT cord-001734-bbeznd3r 157 20 is be VBZ cord-001734-bbeznd3r 157 21 lacking lack VBG cord-001734-bbeznd3r 157 22 of of IN cord-001734-bbeznd3r 157 23 both both DT cord-001734-bbeznd3r 157 24 stable stable JJ cord-001734-bbeznd3r 157 25 secondary secondary JJ cord-001734-bbeznd3r 157 26 and and CC cord-001734-bbeznd3r 157 27 tertiary tertiary JJ cord-001734-bbeznd3r 157 28 structures structure NNS cord-001734-bbeznd3r 157 29 in in IN cord-001734-bbeznd3r 157 30 the the DT cord-001734-bbeznd3r 157 31 absence absence NN cord-001734-bbeznd3r 157 32 of of IN cord-001734-bbeznd3r 157 33 the the DT cord-001734-bbeznd3r 157 34 NS2B NS2B NNP cord-001734-bbeznd3r 157 35 cofactor cofactor NN cord-001734-bbeznd3r 157 36 [ [ -LRB- cord-001734-bbeznd3r 157 37 22 22 CD cord-001734-bbeznd3r 157 38 , , , cord-001734-bbeznd3r 157 39 [ [ -LRB- cord-001734-bbeznd3r 157 40 31 31 CD cord-001734-bbeznd3r 157 41 ] ] -RRB- cord-001734-bbeznd3r 158 1 [ [ -LRB- cord-001734-bbeznd3r 158 2 32 32 CD cord-001734-bbeznd3r 158 3 ] ] -RRB- cord-001734-bbeznd3r 158 4 [ [ -LRB- cord-001734-bbeznd3r 158 5 33 33 CD cord-001734-bbeznd3r 158 6 ] ] -RRB- cord-001734-bbeznd3r 158 7 [ [ -LRB- cord-001734-bbeznd3r 158 8 34 34 CD cord-001734-bbeznd3r 158 9 ] ] -RRB- cord-001734-bbeznd3r 159 1 [ [ -LRB- cord-001734-bbeznd3r 159 2 35 35 CD cord-001734-bbeznd3r 159 3 ] ] -RRB- cord-001734-bbeznd3r 159 4 [ [ -LRB- cord-001734-bbeznd3r 159 5 36 36 CD cord-001734-bbeznd3r 159 6 ] ] -RRB- cord-001734-bbeznd3r 159 7 . . . cord-001734-bbeznd3r 160 1 To to TO cord-001734-bbeznd3r 160 2 pinpoint pinpoint VB cord-001734-bbeznd3r 160 3 the the DT cord-001734-bbeznd3r 160 4 backbone backbone NN cord-001734-bbeznd3r 160 5 flexibility flexibility NN cord-001734-bbeznd3r 160 6 , , , cord-001734-bbeznd3r 160 7 we -PRON- PRP cord-001734-bbeznd3r 160 8 measured measure VBD cord-001734-bbeznd3r 160 9 the the DT cord-001734-bbeznd3r 160 10 { { -LRB- cord-001734-bbeznd3r 160 11 1 1 CD cord-001734-bbeznd3r 160 12 H}-15 H}-15 NNP cord-001734-bbeznd3r 160 13 N n CD cord-001734-bbeznd3r 160 14 heteronuclear heteronuclear NN cord-001734-bbeznd3r 160 15 steady steady JJ cord-001734-bbeznd3r 160 16 - - HYPH cord-001734-bbeznd3r 160 17 state state NN cord-001734-bbeznd3r 160 18 NOE NOE NNP cord-001734-bbeznd3r 160 19 ( ( -LRB- cord-001734-bbeznd3r 160 20 hNOE hnoe NN cord-001734-bbeznd3r 160 21 ) ) -RRB- cord-001734-bbeznd3r 160 22 of of IN cord-001734-bbeznd3r 160 23 the the DT cord-001734-bbeznd3r 160 24 isolated isolated JJ cord-001734-bbeznd3r 160 25 NS3pro ns3pro NN cord-001734-bbeznd3r 160 26 , , , cord-001734-bbeznd3r 160 27 which which WDT cord-001734-bbeznd3r 160 28 is be VBZ cord-001734-bbeznd3r 160 29 a a DT cord-001734-bbeznd3r 160 30 measure measure NN cord-001734-bbeznd3r 160 31 of of IN cord-001734-bbeznd3r 160 32 the the DT cord-001734-bbeznd3r 160 33 backbone backbone NN cord-001734-bbeznd3r 160 34 motions motion NNS cord-001734-bbeznd3r 160 35 on on IN cord-001734-bbeznd3r 160 36 the the DT cord-001734-bbeznd3r 160 37 psns psns JJ cord-001734-bbeznd3r 160 38 time time NN cord-001734-bbeznd3r 160 39 scale scale NN cord-001734-bbeznd3r 160 40 [ [ -LRB- cord-001734-bbeznd3r 160 41 18 18 CD cord-001734-bbeznd3r 160 42 , , , cord-001734-bbeznd3r 160 43 19 19 CD cord-001734-bbeznd3r 160 44 , , , cord-001734-bbeznd3r 160 45 31 31 CD cord-001734-bbeznd3r 160 46 , , , cord-001734-bbeznd3r 160 47 32 32 CD cord-001734-bbeznd3r 160 48 , , , cord-001734-bbeznd3r 160 49 37 37 CD cord-001734-bbeznd3r 160 50 ] ] -RRB- cord-001734-bbeznd3r 160 51 . . . cord-001734-bbeznd3r 161 1 Previously previously RB cord-001734-bbeznd3r 161 2 , , , cord-001734-bbeznd3r 161 3 all all RB cord-001734-bbeznd3r 161 4 except except IN cord-001734-bbeznd3r 161 5 for for IN cord-001734-bbeznd3r 161 6 several several JJ cord-001734-bbeznd3r 161 7 C c NN cord-001734-bbeznd3r 161 8 - - HYPH cord-001734-bbeznd3r 161 9 terminal terminal NN cord-001734-bbeznd3r 161 10 residues residue NNS cord-001734-bbeznd3r 161 11 of of IN cord-001734-bbeznd3r 161 12 the the DT cord-001734-bbeznd3r 161 13 complexed complexed JJ cord-001734-bbeznd3r 161 14 NS3pro NS3pro NNP cord-001734-bbeznd3r 161 15 were be VBD cord-001734-bbeznd3r 161 16 shown show VBN cord-001734-bbeznd3r 161 17 to to TO cord-001734-bbeznd3r 161 18 have have VB cord-001734-bbeznd3r 161 19 positive positive JJ cord-001734-bbeznd3r 161 20 hNOE hnoe NN cord-001734-bbeznd3r 161 21 values value NNS cord-001734-bbeznd3r 161 22 , , , cord-001734-bbeznd3r 161 23 with with IN cord-001734-bbeznd3r 161 24 many many JJ cord-001734-bbeznd3r 161 25 even even RB cord-001734-bbeznd3r 161 26 close close JJ cord-001734-bbeznd3r 161 27 to to IN cord-001734-bbeznd3r 161 28 1 1 CD cord-001734-bbeznd3r 161 29 , , , cord-001734-bbeznd3r 161 30 clearly clearly RB cord-001734-bbeznd3r 161 31 indicating indicate VBG cord-001734-bbeznd3r 161 32 that that IN cord-001734-bbeznd3r 161 33 the the DT cord-001734-bbeznd3r 161 34 backbone backbone NN cord-001734-bbeznd3r 161 35 of of IN cord-001734-bbeznd3r 161 36 the the DT cord-001734-bbeznd3r 161 37 NS3pro NS3pro NNP cord-001734-bbeznd3r 161 38 in in IN cord-001734-bbeznd3r 161 39 the the DT cord-001734-bbeznd3r 161 40 complex complex NN cord-001734-bbeznd3r 161 41 is be VBZ cord-001734-bbeznd3r 161 42 very very RB cord-001734-bbeznd3r 161 43 rigid rigid JJ cord-001734-bbeznd3r 161 44 [ [ -LRB- cord-001734-bbeznd3r 161 45 10 10 CD cord-001734-bbeznd3r 161 46 ] ] -RRB- cord-001734-bbeznd3r 161 47 . . . cord-001734-bbeznd3r 162 1 By by IN cord-001734-bbeznd3r 162 2 contrast contrast NN cord-001734-bbeznd3r 162 3 , , , cord-001734-bbeznd3r 162 4 residues residue NNS cord-001734-bbeznd3r 162 5 of of IN cord-001734-bbeznd3r 162 6 the the DT cord-001734-bbeznd3r 162 7 isolated isolated JJ cord-001734-bbeznd3r 162 8 NS3pro NS3pro NNS cord-001734-bbeznd3r 162 9 have have VBP cord-001734-bbeznd3r 162 10 small small JJ cord-001734-bbeznd3r 162 11 or or CC cord-001734-bbeznd3r 162 12 even even RB cord-001734-bbeznd3r 162 13 negative negative JJ cord-001734-bbeznd3r 162 14 hNOEs hnoe NNS cord-001734-bbeznd3r 163 1 ( ( -LRB- cord-001734-bbeznd3r 163 2 Fig Fig NNP cord-001734-bbeznd3r 163 3 2A 2a CD cord-001734-bbeznd3r 163 4 ) ) -RRB- cord-001734-bbeznd3r 163 5 , , , cord-001734-bbeznd3r 163 6 with with IN cord-001734-bbeznd3r 163 7 an an DT cord-001734-bbeznd3r 163 8 average average JJ cord-001734-bbeznd3r 163 9 hNOE hnoe NN cord-001734-bbeznd3r 163 10 of of IN cord-001734-bbeznd3r 163 11 only only JJ cord-001734-bbeznd3r 163 12 0.08 0.08 CD cord-001734-bbeznd3r 163 13 . . . cord-001734-bbeznd3r 164 1 More more RBR cord-001734-bbeznd3r 164 2 specifically specifically RB cord-001734-bbeznd3r 164 3 , , , cord-001734-bbeznd3r 164 4 all all DT cord-001734-bbeznd3r 164 5 residues residue NNS cord-001734-bbeznd3r 164 6 have have VBP cord-001734-bbeznd3r 164 7 hNOE hnoe NN cord-001734-bbeznd3r 164 8 values value NNS cord-001734-bbeznd3r 164 9 < < XX cord-001734-bbeznd3r 164 10 0.4 0.4 CD cord-001734-bbeznd3r 164 11 , , , cord-001734-bbeznd3r 164 12 while while IN cord-001734-bbeznd3r 164 13 many many JJ cord-001734-bbeznd3r 164 14 residues residue NNS cord-001734-bbeznd3r 164 15 even even RB cord-001734-bbeznd3r 164 16 have have VBP cord-001734-bbeznd3r 164 17 negative negative JJ cord-001734-bbeznd3r 164 18 hNOE hnoe NN cord-001734-bbeznd3r 164 19 , , , cord-001734-bbeznd3r 164 20 such such JJ cord-001734-bbeznd3r 164 21 as as IN cord-001734-bbeznd3r 164 22 N-/C N-/C NNP cord-001734-bbeznd3r 164 23 - - HYPH cord-001734-bbeznd3r 164 24 termini termini NNP cord-001734-bbeznd3r 164 25 , , , cord-001734-bbeznd3r 164 26 Ser34-Gly39 Ser34-Gly39 NNP cord-001734-bbeznd3r 164 27 , , , cord-001734-bbeznd3r 164 28 Arg54-Arg64 Arg54-Arg64 NNP cord-001734-bbeznd3r 164 29 , , , cord-001734-bbeznd3r 164 30 Gln110-Ile139 Gln110-Ile139 NNP cord-001734-bbeznd3r 164 31 and and CC cord-001734-bbeznd3r 164 32 Arg157-Gly159 Arg157-Gly159 NNP cord-001734-bbeznd3r 164 33 ( ( -LRB- cord-001734-bbeznd3r 164 34 Fig Fig NNP cord-001734-bbeznd3r 164 35 2A 2a CD cord-001734-bbeznd3r 164 36 ) ) -RRB- cord-001734-bbeznd3r 164 37 . . . cord-001734-bbeznd3r 165 1 This this DT cord-001734-bbeznd3r 165 2 strongly strongly RB cord-001734-bbeznd3r 165 3 suggests suggest VBZ cord-001734-bbeznd3r 165 4 that that IN cord-001734-bbeznd3r 165 5 the the DT cord-001734-bbeznd3r 165 6 isolated isolated JJ cord-001734-bbeznd3r 165 7 NS3pro NS3pro NNP cord-001734-bbeznd3r 165 8 has have VBZ cord-001734-bbeznd3r 165 9 largely largely RB cord-001734-bbeznd3r 165 10 unrestricted unrestricted JJ cord-001734-bbeznd3r 165 11 backbone backbone NN cord-001734-bbeznd3r 165 12 motions motion NNS cord-001734-bbeznd3r 165 13 on on IN cord-001734-bbeznd3r 165 14 the the DT cord-001734-bbeznd3r 165 15 ps ps NNP cord-001734-bbeznd3r 165 16 - - HYPH cord-001734-bbeznd3r 165 17 ns ns NNP cord-001734-bbeznd3r 165 18 time time NN cord-001734-bbeznd3r 165 19 scale scale NN cord-001734-bbeznd3r 165 20 , , , cord-001734-bbeznd3r 165 21 consistent consistent JJ cord-001734-bbeznd3r 165 22 with with IN cord-001734-bbeznd3r 165 23 its -PRON- PRP$ cord-001734-bbeznd3r 165 24 absence absence NN cord-001734-bbeznd3r 165 25 of of IN cord-001734-bbeznd3r 165 26 any any DT cord-001734-bbeznd3r 165 27 stable stable JJ cord-001734-bbeznd3r 165 28 secondary secondary JJ cord-001734-bbeznd3r 165 29 and and CC cord-001734-bbeznd3r 165 30 tertiary tertiary JJ cord-001734-bbeznd3r 165 31 structures structure NNS cord-001734-bbeznd3r 165 32 . . . cord-001734-bbeznd3r 166 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 166 2 , , , cord-001734-bbeznd3r 166 3 residues residue NNS cord-001734-bbeznd3r 166 4 over over IN cord-001734-bbeznd3r 166 5 Ile65-Leu100 Ile65-Leu100 NNP cord-001734-bbeznd3r 166 6 have have VBP cord-001734-bbeznd3r 166 7 relatively relatively RB cord-001734-bbeznd3r 166 8 large large JJ cord-001734-bbeznd3r 166 9 hNOE hnoe NN cord-001734-bbeznd3r 166 10 , , , cord-001734-bbeznd3r 166 11 implying imply VBG cord-001734-bbeznd3r 166 12 that that IN cord-001734-bbeznd3r 166 13 this this DT cord-001734-bbeznd3r 166 14 region region NN cord-001734-bbeznd3r 166 15 might may MD cord-001734-bbeznd3r 166 16 have have VB cord-001734-bbeznd3r 166 17 transit transit NN cord-001734-bbeznd3r 166 18 tertiary tertiary JJ cord-001734-bbeznd3r 166 19 packing packing NN cord-001734-bbeznd3r 166 20 to to IN cord-001734-bbeznd3r 166 21 a a DT cord-001734-bbeznd3r 166 22 certain certain JJ cord-001734-bbeznd3r 166 23 degree degree NN cord-001734-bbeznd3r 166 24 . . . cord-001734-bbeznd3r 167 1 Previously previously RB cord-001734-bbeznd3r 167 2 many many JJ cord-001734-bbeznd3r 167 3 intrinsically intrinsically RB cord-001734-bbeznd3r 167 4 disordered disordered JJ cord-001734-bbeznd3r 167 5 proteins protein NNS cord-001734-bbeznd3r 167 6 such such JJ cord-001734-bbeznd3r 167 7 as as IN cord-001734-bbeznd3r 167 8 α α NNP cord-001734-bbeznd3r 167 9 - - HYPH cord-001734-bbeznd3r 167 10 synuclein synuclein NNP cord-001734-bbeznd3r 167 11 have have VBP cord-001734-bbeznd3r 167 12 been be VBN cord-001734-bbeznd3r 167 13 shown show VBN cord-001734-bbeznd3r 167 14 to to TO cord-001734-bbeznd3r 167 15 have have VB cord-001734-bbeznd3r 167 16 transient transient JJ cord-001734-bbeznd3r 167 17 long long JJ cord-001734-bbeznd3r 167 18 - - HYPH cord-001734-bbeznd3r 167 19 range range NN cord-001734-bbeznd3r 167 20 interactions interaction NNS cord-001734-bbeznd3r 167 21 by by IN cord-001734-bbeznd3r 167 22 measurements measurement NNS cord-001734-bbeznd3r 167 23 of of IN cord-001734-bbeznd3r 167 24 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 167 25 relaxation relaxation NN cord-001734-bbeznd3r 167 26 enhancement enhancement NN cord-001734-bbeznd3r 167 27 ( ( -LRB- cord-001734-bbeznd3r 167 28 PRE PRE NNP cord-001734-bbeznd3r 167 29 ) ) -RRB- cord-001734-bbeznd3r 167 30 , , , cord-001734-bbeznd3r 167 31 which which WDT cord-001734-bbeznd3r 167 32 is be VBZ cord-001734-bbeznd3r 167 33 a a DT cord-001734-bbeznd3r 167 34 powerful powerful JJ cord-001734-bbeznd3r 167 35 tool tool NN cord-001734-bbeznd3r 167 36 in in IN cord-001734-bbeznd3r 167 37 detecting detect VBG cord-001734-bbeznd3r 167 38 transiently transiently RB cord-001734-bbeznd3r 167 39 existing exist VBG cord-001734-bbeznd3r 167 40 contacts contact NNS cord-001734-bbeznd3r 167 41 in in IN cord-001734-bbeznd3r 167 42 highly highly RB cord-001734-bbeznd3r 167 43 disordered disordered JJ cord-001734-bbeznd3r 167 44 proteins protein NNS cord-001734-bbeznd3r 167 45 with with IN cord-001734-bbeznd3r 167 46 distances distance NNS cord-001734-bbeznd3r 167 47 up up IN cord-001734-bbeznd3r 167 48 to~25 to~25 NNP cord-001734-bbeznd3r 167 49 Å Å NNP cord-001734-bbeznd3r 167 50 [ [ -LRB- cord-001734-bbeznd3r 167 51 18 18 CD cord-001734-bbeznd3r 167 52 , , , cord-001734-bbeznd3r 167 53 32 32 CD cord-001734-bbeznd3r 167 54 , , , cord-001734-bbeznd3r 167 55 38 38 CD cord-001734-bbeznd3r 167 56 ] ] -RRB- cord-001734-bbeznd3r 167 57 . . . cord-001734-bbeznd3r 168 1 Here here RB cord-001734-bbeznd3r 168 2 , , , cord-001734-bbeznd3r 168 3 by by IN cord-001734-bbeznd3r 168 4 site site NN cord-001734-bbeznd3r 168 5 - - HYPH cord-001734-bbeznd3r 168 6 directed direct VBN cord-001734-bbeznd3r 168 7 mutagenesis mutagenesis NN cord-001734-bbeznd3r 168 8 , , , cord-001734-bbeznd3r 168 9 we -PRON- PRP cord-001734-bbeznd3r 168 10 introduced introduce VBD cord-001734-bbeznd3r 168 11 Cys Cys NNP cord-001734-bbeznd3r 168 12 residue residue NN cord-001734-bbeznd3r 168 13 into into IN cord-001734-bbeznd3r 168 14 NS3pro NS3pro NNP cord-001734-bbeznd3r 168 15 one one CD cord-001734-bbeznd3r 168 16 by by IN cord-001734-bbeznd3r 168 17 one one CD cord-001734-bbeznd3r 168 18 at at IN cord-001734-bbeznd3r 168 19 three three CD cord-001734-bbeznd3r 168 20 locations location NNS cord-001734-bbeznd3r 168 21 : : : cord-001734-bbeznd3r 168 22 Gln27 Gln27 NNP cord-001734-bbeznd3r 168 23 , , , cord-001734-bbeznd3r 168 24 Glu86 Glu86 NNP cord-001734-bbeznd3r 168 25 and and CC cord-001734-bbeznd3r 168 26 Ser158 Ser158 . cord-001734-bbeznd3r 169 1 ( ( -LRB- cord-001734-bbeznd3r 169 2 S1 S1 NNP cord-001734-bbeznd3r 169 3 Fig Fig NNP cord-001734-bbeznd3r 169 4 ) ) -RRB- cord-001734-bbeznd3r 169 5 . . . cord-001734-bbeznd3r 170 1 Three three CD cord-001734-bbeznd3r 170 2 single single JJ cord-001734-bbeznd3r 170 3 Cys Cys NNP cord-001734-bbeznd3r 170 4 mutants mutant NNS cord-001734-bbeznd3r 170 5 were be VBD cord-001734-bbeznd3r 170 6 subsequently subsequently RB cord-001734-bbeznd3r 170 7 labelled label VBN cord-001734-bbeznd3r 170 8 with with IN cord-001734-bbeznd3r 170 9 the the DT cord-001734-bbeznd3r 170 10 nitroxide nitroxide NNP cord-001734-bbeznd3r 170 11 free free JJ cord-001734-bbeznd3r 170 12 radical radical JJ cord-001734-bbeznd3r 170 13 probe probe NN cord-001734-bbeznd3r 170 14 , , , cord-001734-bbeznd3r 170 15 MTSSL MTSSL NNP cord-001734-bbeznd3r 170 16 whose whose WP$ cord-001734-bbeznd3r 170 17 PRE PRE NNP cord-001734-bbeznd3r 170 18 were be VBD cord-001734-bbeznd3r 170 19 measured measure VBN cord-001734-bbeznd3r 170 20 by by IN cord-001734-bbeznd3r 170 21 HSQC HSQC NNP cord-001734-bbeznd3r 170 22 ( ( -LRB- cord-001734-bbeznd3r 170 23 S1 S1 NNP cord-001734-bbeznd3r 170 24 Fig Fig NNP cord-001734-bbeznd3r 170 25 ) ) -RRB- cord-001734-bbeznd3r 170 26 as as IN cord-001734-bbeznd3r 170 27 we -PRON- PRP cord-001734-bbeznd3r 170 28 previously previously RB cord-001734-bbeznd3r 170 29 described describe VBD cord-001734-bbeznd3r 170 30 [ [ -LRB- cord-001734-bbeznd3r 170 31 18 18 CD cord-001734-bbeznd3r 170 32 ] ] -RRB- cord-001734-bbeznd3r 170 33 . . . cord-001734-bbeznd3r 171 1 Fig Fig NNP cord-001734-bbeznd3r 171 2 2B 2b CD cord-001734-bbeznd3r 171 3 shows show VBZ cord-001734-bbeznd3r 171 4 the the DT cord-001734-bbeznd3r 171 5 intensity intensity NN cord-001734-bbeznd3r 171 6 ratios ratio NNS cord-001734-bbeznd3r 171 7 of of IN cord-001734-bbeznd3r 171 8 HSQC HSQC NNP cord-001734-bbeznd3r 171 9 peaks peak NNS cord-001734-bbeznd3r 171 10 from from IN cord-001734-bbeznd3r 171 11 the the DT cord-001734-bbeznd3r 171 12 oxidized oxidize VBN cord-001734-bbeznd3r 171 13 ( ( -LRB- cord-001734-bbeznd3r 171 14 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 171 15 ) ) -RRB- cord-001734-bbeznd3r 171 16 and and CC cord-001734-bbeznd3r 171 17 reduced reduce VBN cord-001734-bbeznd3r 171 18 ( ( -LRB- cord-001734-bbeznd3r 171 19 diamagnetic diamagnetic JJ cord-001734-bbeznd3r 171 20 ) ) -RRB- cord-001734-bbeznd3r 171 21 spectra spectrum NNS cord-001734-bbeznd3r 171 22 of of IN cord-001734-bbeznd3r 171 23 Q27C Q27C NNP cord-001734-bbeznd3r 171 24 mutant mutant JJ cord-001734-bbeznd3r 171 25 . . . cord-001734-bbeznd3r 172 1 Interestingly interestingly RB cord-001734-bbeznd3r 172 2 , , , cord-001734-bbeznd3r 172 3 the the DT cord-001734-bbeznd3r 172 4 residues residue NNS cord-001734-bbeznd3r 172 5 which which WDT cord-001734-bbeznd3r 172 6 were be VBD cord-001734-bbeznd3r 172 7 significant significant JJ cord-001734-bbeznd3r 172 8 affected affect VBN cord-001734-bbeznd3r 172 9 ( ( -LRB- cord-001734-bbeznd3r 172 10 ratio ratio NN cord-001734-bbeznd3r 172 11 < < XX cord-001734-bbeznd3r 172 12 0.85 0.85 CD cord-001734-bbeznd3r 172 13 ) ) -RRB- cord-001734-bbeznd3r 172 14 are be VBP cord-001734-bbeznd3r 172 15 all all DT cord-001734-bbeznd3r 172 16 located locate VBN cord-001734-bbeznd3r 172 17 in in IN cord-001734-bbeznd3r 172 18 the the DT cord-001734-bbeznd3r 172 19 first first JJ cord-001734-bbeznd3r 172 20 β β NN cord-001734-bbeznd3r 172 21 - - HYPH cord-001734-bbeznd3r 172 22 barrel barrel NN cord-001734-bbeznd3r 172 23 of of IN cord-001734-bbeznd3r 172 24 the the DT cord-001734-bbeznd3r 172 25 chymotrypsin chymotrypsin NNP cord-001734-bbeznd3r 172 26 fold fold NN cord-001734-bbeznd3r 172 27 adopted adopt VBN cord-001734-bbeznd3r 172 28 by by IN cord-001734-bbeznd3r 172 29 the the DT cord-001734-bbeznd3r 172 30 NS3pro NS3pro NNP cord-001734-bbeznd3r 172 31 domain domain NN cord-001734-bbeznd3r 172 32 in in IN cord-001734-bbeznd3r 172 33 the the DT cord-001734-bbeznd3r 172 34 native native JJ cord-001734-bbeznd3r 172 35 NS2B NS2B NNP cord-001734-bbeznd3r 172 36 - - HYPH cord-001734-bbeznd3r 172 37 NS3pro NS3pro NNP cord-001734-bbeznd3r 172 38 complex complex NN cord-001734-bbeznd3r 172 39 ( ( -LRB- cord-001734-bbeznd3r 172 40 Fig Fig NNP cord-001734-bbeznd3r 172 41 2C 2c NN cord-001734-bbeznd3r 172 42 ) ) -RRB- cord-001734-bbeznd3r 172 43 . . . cord-001734-bbeznd3r 173 1 This this DT cord-001734-bbeznd3r 173 2 suggests suggest VBZ cord-001734-bbeznd3r 173 3 that that IN cord-001734-bbeznd3r 173 4 these these DT cord-001734-bbeznd3r 173 5 affected affect VBN cord-001734-bbeznd3r 173 6 residues residue NNS cord-001734-bbeznd3r 173 7 have have VBP cord-001734-bbeznd3r 173 8 long long JJ cord-001734-bbeznd3r 173 9 - - HYPH cord-001734-bbeznd3r 173 10 range range NN cord-001734-bbeznd3r 173 11 contacts contact NNS cord-001734-bbeznd3r 173 12 with with IN cord-001734-bbeznd3r 173 13 Cys27 Cys27 NNP cord-001734-bbeznd3r 173 14 with with IN cord-001734-bbeznd3r 173 15 distances distance NNS cord-001734-bbeznd3r 173 16 < < XX cord-001734-bbeznd3r 173 17 25 25 CD cord-001734-bbeznd3r 173 18 Å. Å. NNP cord-001734-bbeznd3r 174 1 Interestingly interestingly RB cord-001734-bbeznd3r 174 2 , , , cord-001734-bbeznd3r 174 3 although although IN cord-001734-bbeznd3r 174 4 residues residue NNS cord-001734-bbeznd3r 174 5 Thr48-Glu66 thr48-glu66 IN cord-001734-bbeznd3r 174 6 assuming assume VBG cord-001734-bbeznd3r 174 7 a a DT cord-001734-bbeznd3r 174 8 short short JJ cord-001734-bbeznd3r 174 9 helix helix NN cord-001734-bbeznd3r 174 10 and and CC cord-001734-bbeznd3r 174 11 β β NN cord-001734-bbeznd3r 174 12 - - HYPH cord-001734-bbeznd3r 174 13 sheet sheet NN cord-001734-bbeznd3r 174 14 have have VBP cord-001734-bbeznd3r 174 15 very very RB cord-001734-bbeznd3r 174 16 close close JJ cord-001734-bbeznd3r 174 17 contacts contact NNS cord-001734-bbeznd3r 174 18 with with IN cord-001734-bbeznd3r 174 19 Cys27 Cys27 NNP cord-001734-bbeznd3r 174 20 in in IN cord-001734-bbeznd3r 174 21 the the DT cord-001734-bbeznd3r 174 22 native native JJ cord-001734-bbeznd3r 174 23 structure structure NN cord-001734-bbeznd3r 174 24 , , , cord-001734-bbeznd3r 174 25 they -PRON- PRP cord-001734-bbeznd3r 174 26 were be VBD cord-001734-bbeznd3r 174 27 not not RB cord-001734-bbeznd3r 174 28 significantly significantly RB cord-001734-bbeznd3r 174 29 perturbed perturb VBN cord-001734-bbeznd3r 174 30 by by IN cord-001734-bbeznd3r 174 31 the the DT cord-001734-bbeznd3r 174 32 spin spin NN cord-001734-bbeznd3r 174 33 - - HYPH cord-001734-bbeznd3r 174 34 label label NN cord-001734-bbeznd3r 174 35 at at IN cord-001734-bbeznd3r 174 36 Cys27 Cys27 NNP cord-001734-bbeznd3r 174 37 . . . cord-001734-bbeznd3r 175 1 This this DT cord-001734-bbeznd3r 175 2 strongly strongly RB cord-001734-bbeznd3r 175 3 implies imply VBZ cord-001734-bbeznd3r 175 4 that that IN cord-001734-bbeznd3r 175 5 the the DT cord-001734-bbeznd3r 175 6 tertiary tertiary JJ cord-001734-bbeznd3r 175 7 packing packing NN cord-001734-bbeznd3r 175 8 is be VBZ cord-001734-bbeznd3r 175 9 non non JJ cord-001734-bbeznd3r 175 10 - - JJ cord-001734-bbeznd3r 175 11 native native JJ cord-001734-bbeznd3r 175 12 in in IN cord-001734-bbeznd3r 175 13 the the DT cord-001734-bbeznd3r 175 14 isolated isolated JJ cord-001734-bbeznd3r 175 15 NS3pro ns3pro NN cord-001734-bbeznd3r 175 16 domain domain NN cord-001734-bbeznd3r 175 17 . . . cord-001734-bbeznd3r 176 1 The the DT cord-001734-bbeznd3r 176 2 spin spin NN cord-001734-bbeznd3r 176 3 - - HYPH cord-001734-bbeznd3r 176 4 label label NN cord-001734-bbeznd3r 176 5 at at IN cord-001734-bbeznd3r 176 6 the the DT cord-001734-bbeznd3r 176 7 position position NN cord-001734-bbeznd3r 176 8 86 86 CD cord-001734-bbeznd3r 176 9 significantly significantly RB cord-001734-bbeznd3r 176 10 affected affect VBD cord-001734-bbeznd3r 176 11 the the DT cord-001734-bbeznd3r 176 12 residues residue NNS cord-001734-bbeznd3r 176 13 on on IN cord-001734-bbeznd3r 176 14 both both CC cord-001734-bbeznd3r 176 15 β β NN cord-001734-bbeznd3r 176 16 - - HYPH cord-001734-bbeznd3r 176 17 barrels barrel NNS cord-001734-bbeznd3r 176 18 ( ( -LRB- cord-001734-bbeznd3r 176 19 Fig Fig NNP cord-001734-bbeznd3r 176 20 2D 2d NN cord-001734-bbeznd3r 176 21 and and CC cord-001734-bbeznd3r 176 22 2E 2E NNP cord-001734-bbeznd3r 176 23 ) ) -RRB- cord-001734-bbeznd3r 176 24 , , , cord-001734-bbeznd3r 176 25 suggesting suggest VBG cord-001734-bbeznd3r 176 26 that that IN cord-001734-bbeznd3r 176 27 these these DT cord-001734-bbeznd3r 176 28 residues residue NNS cord-001734-bbeznd3r 176 29 have have VBP cord-001734-bbeznd3r 176 30 long long JJ cord-001734-bbeznd3r 176 31 - - HYPH cord-001734-bbeznd3r 176 32 range range NN cord-001734-bbeznd3r 176 33 contacts contact NNS cord-001734-bbeznd3r 176 34 to to IN cord-001734-bbeznd3r 176 35 Cys86 Cys86 NNPS cord-001734-bbeznd3r 176 36 with with IN cord-001734-bbeznd3r 176 37 distances distance NNS cord-001734-bbeznd3r 176 38 < < XX cord-001734-bbeznd3r 176 39 25 25 CD cord-001734-bbeznd3r 176 40 Å. Å. NNP cord-001734-bbeznd3r 176 41 Again again RB cord-001734-bbeznd3r 176 42 , , , cord-001734-bbeznd3r 176 43 many many JJ cord-001734-bbeznd3r 176 44 residues residue NNS cord-001734-bbeznd3r 176 45 have have VBP cord-001734-bbeznd3r 176 46 very very RB cord-001734-bbeznd3r 176 47 close close JJ cord-001734-bbeznd3r 176 48 contacts contact NNS cord-001734-bbeznd3r 176 49 with with IN cord-001734-bbeznd3r 176 50 Cys86 Cys86 NNPS cord-001734-bbeznd3r 176 51 in in IN cord-001734-bbeznd3r 176 52 the the DT cord-001734-bbeznd3r 176 53 native native JJ cord-001734-bbeznd3r 176 54 fold fold NN cord-001734-bbeznd3r 176 55 but but CC cord-001734-bbeznd3r 176 56 were be VBD cord-001734-bbeznd3r 176 57 not not RB cord-001734-bbeznd3r 176 58 significantly significantly RB cord-001734-bbeznd3r 176 59 perturbed perturb VBN cord-001734-bbeznd3r 176 60 by by IN cord-001734-bbeznd3r 176 61 the the DT cord-001734-bbeznd3r 176 62 spin spin NN cord-001734-bbeznd3r 176 63 - - HYPH cord-001734-bbeznd3r 176 64 label label NN cord-001734-bbeznd3r 176 65 at at IN cord-001734-bbeznd3r 176 66 Cys88 Cys88 NNP cord-001734-bbeznd3r 176 67 . . . cord-001734-bbeznd3r 177 1 The the DT cord-001734-bbeznd3r 177 2 residues residue NNS cord-001734-bbeznd3r 177 3 affected affect VBN cord-001734-bbeznd3r 177 4 by by IN cord-001734-bbeznd3r 177 5 the the DT cord-001734-bbeznd3r 177 6 spin spin NN cord-001734-bbeznd3r 177 7 - - HYPH cord-001734-bbeznd3r 177 8 label label NN cord-001734-bbeznd3r 177 9 at at IN cord-001734-bbeznd3r 177 10 the the DT cord-001734-bbeznd3r 177 11 position position NN cord-001734-bbeznd3r 177 12 158 158 CD cord-001734-bbeznd3r 177 13 are be VBP cord-001734-bbeznd3r 177 14 mostly mostly RB cord-001734-bbeznd3r 177 15 located locate VBN cord-001734-bbeznd3r 177 16 on on IN cord-001734-bbeznd3r 177 17 second second JJ cord-001734-bbeznd3r 177 18 β β NN cord-001734-bbeznd3r 177 19 - - HYPH cord-001734-bbeznd3r 177 20 barrel barrel NN cord-001734-bbeznd3r 177 21 , , , cord-001734-bbeznd3r 177 22 the the DT cord-001734-bbeznd3r 177 23 loop loop NN cord-001734-bbeznd3r 177 24 connecting connect VBG cord-001734-bbeznd3r 177 25 two two CD cord-001734-bbeznd3r 177 26 βbarrels βbarrel NNS cord-001734-bbeznd3r 177 27 , , , cord-001734-bbeznd3r 177 28 and and CC cord-001734-bbeznd3r 177 29 the the DT cord-001734-bbeznd3r 177 30 last last JJ cord-001734-bbeznd3r 177 31 β β NN cord-001734-bbeznd3r 177 32 - - HYPH cord-001734-bbeznd3r 177 33 sheet sheet NN cord-001734-bbeznd3r 177 34 over over IN cord-001734-bbeznd3r 177 35 residues residue NNS cord-001734-bbeznd3r 177 36 Ser68-Gly71 ser68-gly71 NN cord-001734-bbeznd3r 178 1 ( ( -LRB- cord-001734-bbeznd3r 178 2 Fig Fig NNP cord-001734-bbeznd3r 178 3 2F 2F NNP cord-001734-bbeznd3r 178 4 and and CC cord-001734-bbeznd3r 178 5 2 2 CD cord-001734-bbeznd3r 178 6 G G NNP cord-001734-bbeznd3r 178 7 ) ) -RRB- cord-001734-bbeznd3r 178 8 . . . cord-001734-bbeznd3r 179 1 The the DT cord-001734-bbeznd3r 179 2 PRE pre JJ cord-001734-bbeznd3r 179 3 measurements measurement NNS cord-001734-bbeznd3r 179 4 revealed reveal VBD cord-001734-bbeznd3r 179 5 that that IN cord-001734-bbeznd3r 179 6 despite despite IN cord-001734-bbeznd3r 179 7 lacking lack VBG cord-001734-bbeznd3r 179 8 of of IN cord-001734-bbeznd3r 179 9 stable stable JJ cord-001734-bbeznd3r 179 10 secondary secondary JJ cord-001734-bbeznd3r 179 11 and and CC cord-001734-bbeznd3r 179 12 tight tight JJ cord-001734-bbeznd3r 179 13 tertiary tertiary JJ cord-001734-bbeznd3r 179 14 structures structure NNS cord-001734-bbeznd3r 179 15 , , , cord-001734-bbeznd3r 179 16 the the DT cord-001734-bbeznd3r 179 17 isolated isolated JJ cord-001734-bbeznd3r 179 18 NS3pro ns3pro NN cord-001734-bbeznd3r 179 19 domain domain NN cord-001734-bbeznd3r 179 20 is be VBZ cord-001734-bbeznd3r 179 21 not not RB cord-001734-bbeznd3r 179 22 completely completely RB cord-001734-bbeznd3r 179 23 extended extend VBN cord-001734-bbeznd3r 179 24 , , , cord-001734-bbeznd3r 179 25 but but CC cord-001734-bbeznd3r 179 26 instead instead RB cord-001734-bbeznd3r 179 27 has have VBZ cord-001734-bbeznd3r 179 28 a a DT cord-001734-bbeznd3r 179 29 loose loose JJ cord-001734-bbeznd3r 179 30 tertiary tertiary JJ cord-001734-bbeznd3r 179 31 packing packing NN cord-001734-bbeznd3r 179 32 . . . cord-001734-bbeznd3r 180 1 However however RB cord-001734-bbeznd3r 180 2 , , , cord-001734-bbeznd3r 180 3 this this DT cord-001734-bbeznd3r 180 4 packing packing NN cord-001734-bbeznd3r 180 5 is be VBZ cord-001734-bbeznd3r 180 6 highly highly RB cord-001734-bbeznd3r 180 7 dynamic dynamic JJ cord-001734-bbeznd3r 180 8 and and CC cord-001734-bbeznd3r 180 9 non non JJ cord-001734-bbeznd3r 180 10 - - JJ cord-001734-bbeznd3r 180 11 native native JJ cord-001734-bbeznd3r 180 12 , , , cord-001734-bbeznd3r 180 13 in in IN cord-001734-bbeznd3r 180 14 which which WDT cord-001734-bbeznd3r 180 15 the the DT cord-001734-bbeznd3r 180 16 residues residue NNS cord-001734-bbeznd3r 180 17 over over IN cord-001734-bbeznd3r 180 18 the the DT cord-001734-bbeznd3r 180 19 middle middle JJ cord-001734-bbeznd3r 180 20 region region NN cord-001734-bbeznd3r 180 21 of of IN cord-001734-bbeznd3r 180 22 the the DT cord-001734-bbeznd3r 180 23 NS3pro NS3pro NNP cord-001734-bbeznd3r 180 24 sequence sequence NN cord-001734-bbeznd3r 180 25 are be VBP cord-001734-bbeznd3r 180 26 slightly slightly RB cord-001734-bbeznd3r 180 27 less less RBR cord-001734-bbeznd3r 180 28 dynamic dynamic JJ cord-001734-bbeznd3r 180 29 than than IN cord-001734-bbeznd3r 180 30 the the DT cord-001734-bbeznd3r 180 31 N N NNP cord-001734-bbeznd3r 180 32 - - HYPH cord-001734-bbeznd3r 180 33 and and CC cord-001734-bbeznd3r 180 34 C c NN cord-001734-bbeznd3r 180 35 - - HYPH cord-001734-bbeznd3r 180 36 terminal terminal NN cord-001734-bbeznd3r 180 37 ones one NNS cord-001734-bbeznd3r 180 38 , , , cord-001734-bbeznd3r 180 39 completely completely RB cord-001734-bbeznd3r 180 40 consistent consistent JJ cord-001734-bbeznd3r 180 41 with with IN cord-001734-bbeznd3r 180 42 hNOE hnoe NN cord-001734-bbeznd3r 180 43 results result NNS cord-001734-bbeznd3r 180 44 ( ( -LRB- cord-001734-bbeznd3r 180 45 Fig Fig NNP cord-001734-bbeznd3r 180 46 2A 2a CD cord-001734-bbeznd3r 180 47 ) ) -RRB- cord-001734-bbeznd3r 180 48 . . . cord-001734-bbeznd3r 181 1 The the DT cord-001734-bbeznd3r 181 2 isolated isolated JJ cord-001734-bbeznd3r 181 3 NS3pro ns3pro NN cord-001734-bbeznd3r 181 4 ( ( -LRB- cord-001734-bbeznd3r 181 5 14 14 CD cord-001734-bbeznd3r 181 6 - - SYM cord-001734-bbeznd3r 181 7 185 185 CD cord-001734-bbeznd3r 181 8 ) ) -RRB- cord-001734-bbeznd3r 181 9 and and CC cord-001734-bbeznd3r 181 10 NS2B NS2B NNP cord-001734-bbeznd3r 181 11 ( ( -LRB- cord-001734-bbeznd3r 181 12 48 48 CD cord-001734-bbeznd3r 181 13 - - SYM cord-001734-bbeznd3r 181 14 100 100 CD cord-001734-bbeznd3r 181 15 ) ) -RRB- cord-001734-bbeznd3r 181 16 are be VBP cord-001734-bbeznd3r 181 17 largely largely RB cord-001734-bbeznd3r 181 18 disordered disordered JJ cord-001734-bbeznd3r 181 19 in in IN cord-001734-bbeznd3r 181 20 solution solution NN cord-001734-bbeznd3r 181 21 ( ( -LRB- cord-001734-bbeznd3r 181 22 Fig Fig NNP cord-001734-bbeznd3r 181 23 3A 3a CD cord-001734-bbeznd3r 181 24 ) ) -RRB- cord-001734-bbeznd3r 181 25 and and CC cord-001734-bbeznd3r 181 26 the the DT cord-001734-bbeznd3r 181 27 NS3pro NS3pro NNP cord-001734-bbeznd3r 181 28 alone alone RB cord-001734-bbeznd3r 181 29 showed show VBD cord-001734-bbeznd3r 181 30 no no DT cord-001734-bbeznd3r 181 31 detectable detectable JJ cord-001734-bbeznd3r 181 32 catalytic catalytic JJ cord-001734-bbeznd3r 181 33 activity activity NN cord-001734-bbeznd3r 181 34 even even RB cord-001734-bbeznd3r 181 35 with with IN cord-001734-bbeznd3r 181 36 a a DT cord-001734-bbeznd3r 181 37 protease protease NN cord-001734-bbeznd3r 181 38 concentration concentration NN cord-001734-bbeznd3r 181 39 up up IN cord-001734-bbeznd3r 181 40 to to IN cord-001734-bbeznd3r 181 41 5 5 CD cord-001734-bbeznd3r 181 42 μM μM NNS cord-001734-bbeznd3r 181 43 in in IN cord-001734-bbeznd3r 181 44 buffers buffer NNS cord-001734-bbeznd3r 181 45 at at IN cord-001734-bbeznd3r 181 46 pH pH NNP cord-001734-bbeznd3r 181 47 7.5 7.5 CD cord-001734-bbeznd3r 182 1 ( ( -LRB- cord-001734-bbeznd3r 182 2 Fig Fig NNP cord-001734-bbeznd3r 182 3 3B 3b CD cord-001734-bbeznd3r 182 4 ) ) -RRB- cord-001734-bbeznd3r 182 5 . . . cord-001734-bbeznd3r 183 1 However however RB cord-001734-bbeznd3r 183 2 , , , cord-001734-bbeznd3r 183 3 upon upon IN cord-001734-bbeznd3r 183 4 mixing mix VBG cord-001734-bbeznd3r 183 5 them -PRON- PRP cord-001734-bbeznd3r 183 6 at at IN cord-001734-bbeznd3r 183 7 an an DT cord-001734-bbeznd3r 183 8 equal equal JJ cord-001734-bbeznd3r 183 9 molar molar JJ cord-001734-bbeznd3r 183 10 ratio ratio NN cord-001734-bbeznd3r 183 11 in in IN cord-001734-bbeznd3r 183 12 Milli Milli NNP cord-001734-bbeznd3r 183 13 - - HYPH cord-001734-bbeznd3r 183 14 Q Q NNP cord-001734-bbeznd3r 183 15 water water NN cord-001734-bbeznd3r 183 16 at at IN cord-001734-bbeznd3r 183 17 pH pH NNP cord-001734-bbeznd3r 183 18 4.0 4.0 CD cord-001734-bbeznd3r 183 19 , , , cord-001734-bbeznd3r 183 20 the the DT cord-001734-bbeznd3r 183 21 mixture mixture NN cord-001734-bbeznd3r 183 22 has have VBZ cord-001734-bbeznd3r 183 23 a a DT cord-001734-bbeznd3r 183 24 CD cd NN cord-001734-bbeznd3r 183 25 spectrum spectrum NN cord-001734-bbeznd3r 183 26 for for IN cord-001734-bbeznd3r 183 27 a a DT cord-001734-bbeznd3r 183 28 protein protein NN cord-001734-bbeznd3r 183 29 with with IN cord-001734-bbeznd3r 183 30 a a DT cord-001734-bbeznd3r 183 31 substantial substantial JJ cord-001734-bbeznd3r 183 32 amount amount NN cord-001734-bbeznd3r 183 33 of of IN cord-001734-bbeznd3r 183 34 secondary secondary JJ cord-001734-bbeznd3r 183 35 structures structure NNS cord-001734-bbeznd3r 183 36 , , , cord-001734-bbeznd3r 183 37 which which WDT cord-001734-bbeznd3r 183 38 has have VBZ cord-001734-bbeznd3r 183 39 a a DT cord-001734-bbeznd3r 183 40 large large JJ cord-001734-bbeznd3r 183 41 positive positive JJ cord-001734-bbeznd3r 183 42 signal signal NN cord-001734-bbeznd3r 183 43 at at IN cord-001734-bbeznd3r 183 44 190 190 CD cord-001734-bbeznd3r 183 45 nm nm NN cord-001734-bbeznd3r 183 46 and and CC cord-001734-bbeznd3r 183 47 the the DT cord-001734-bbeznd3r 183 48 maximal maximal JJ cord-001734-bbeznd3r 183 49 negative negative JJ cord-001734-bbeznd3r 183 50 signal signal NN cord-001734-bbeznd3r 183 51 at at IN cord-001734-bbeznd3r 183 52 208 208 CD cord-001734-bbeznd3r 183 53 nm nm NN cord-001734-bbeznd3r 183 54 ( ( -LRB- cord-001734-bbeznd3r 183 55 Fig Fig NNP cord-001734-bbeznd3r 183 56 3A 3a CD cord-001734-bbeznd3r 183 57 ) ) -RRB- cord-001734-bbeznd3r 183 58 . . . cord-001734-bbeznd3r 184 1 The the DT cord-001734-bbeznd3r 184 2 deconvolution deconvolution NN cord-001734-bbeznd3r 184 3 shows show VBZ cord-001734-bbeznd3r 184 4 that that IN cord-001734-bbeznd3r 184 5 this this DT cord-001734-bbeznd3r 184 6 refolded refolde VBD cord-001734-bbeznd3r 184 7 complex complex NN cord-001734-bbeznd3r 184 8 between between IN cord-001734-bbeznd3r 184 9 NS2B NS2B NNP cord-001734-bbeznd3r 184 10 ( ( -LRB- cord-001734-bbeznd3r 184 11 48 48 CD cord-001734-bbeznd3r 184 12 - - SYM cord-001734-bbeznd3r 184 13 100 100 CD cord-001734-bbeznd3r 184 14 ) ) -RRB- cord-001734-bbeznd3r 184 15 and and CC cord-001734-bbeznd3r 184 16 NS3pro NS3pro NNP cord-001734-bbeznd3r 184 17 in in IN cord-001734-bbeznd3r 184 18 water water NN cord-001734-bbeznd3r 184 19 at at IN cord-001734-bbeznd3r 184 20 pH pH NNP cord-001734-bbeznd3r 184 21 4.0 4.0 CD cord-001734-bbeznd3r 184 22 contains contain VBZ cord-001734-bbeznd3r 184 23 a a DT cord-001734-bbeznd3r 184 24 large large JJ cord-001734-bbeznd3r 184 25 portion portion NN cord-001734-bbeznd3r 184 26 of of IN cord-001734-bbeznd3r 184 27 β β NN cord-001734-bbeznd3r 184 28 - - HYPH cord-001734-bbeznd3r 184 29 strand strand NN cord-001734-bbeznd3r 184 30 and and CC cord-001734-bbeznd3r 184 31 βturn βturn NN cord-001734-bbeznd3r 184 32 structures structure NNS cord-001734-bbeznd3r 184 33 : : : cord-001734-bbeznd3r 184 34 34 34 CD cord-001734-bbeznd3r 184 35 % % NN cord-001734-bbeznd3r 184 36 random random JJ cord-001734-bbeznd3r 184 37 coil coil NN cord-001734-bbeznd3r 184 38 , , , cord-001734-bbeznd3r 184 39 22 22 CD cord-001734-bbeznd3r 184 40 % % NN cord-001734-bbeznd3r 184 41 turn turn NN cord-001734-bbeznd3r 184 42 , , , cord-001734-bbeznd3r 184 43 37 37 CD cord-001734-bbeznd3r 184 44 % % NN cord-001734-bbeznd3r 184 45 extended extended JJ cord-001734-bbeznd3r 184 46 strand strand NN cord-001734-bbeznd3r 184 47 and and CC cord-001734-bbeznd3r 184 48 7 7 CD cord-001734-bbeznd3r 184 49 % % NN cord-001734-bbeznd3r 184 50 helix helix NN cord-001734-bbeznd3r 184 51 secondary secondary JJ cord-001734-bbeznd3r 184 52 structures structure NNS cord-001734-bbeznd3r 184 53 , , , cord-001734-bbeznd3r 184 54 which which WDT cord-001734-bbeznd3r 184 55 is be VBZ cord-001734-bbeznd3r 184 56 consistent consistent JJ cord-001734-bbeznd3r 184 57 with with IN cord-001734-bbeznd3r 184 58 its -PRON- PRP$ cord-001734-bbeznd3r 184 59 three three CD cord-001734-bbeznd3r 184 60 - - HYPH cord-001734-bbeznd3r 184 61 dimensional dimensional JJ cord-001734-bbeznd3r 184 62 structure structure NN cord-001734-bbeznd3r 184 63 ( ( -LRB- cord-001734-bbeznd3r 184 64 Fig Fig NNP cord-001734-bbeznd3r 184 65 2 2 CD cord-001734-bbeznd3r 184 66 ) ) -RRB- cord-001734-bbeznd3r 184 67 . . . cord-001734-bbeznd3r 185 1 This this DT cord-001734-bbeznd3r 185 2 sample sample NN cord-001734-bbeznd3r 185 3 was be VBD cord-001734-bbeznd3r 185 4 subsequently subsequently RB cord-001734-bbeznd3r 185 5 split split VBN cord-001734-bbeznd3r 185 6 into into IN cord-001734-bbeznd3r 185 7 two two CD cord-001734-bbeznd3r 185 8 : : : cord-001734-bbeznd3r 185 9 one one CD cord-001734-bbeznd3r 185 10 at at IN cord-001734-bbeznd3r 185 11 the the DT cord-001734-bbeznd3r 185 12 same same JJ cord-001734-bbeznd3r 185 13 condition condition NN cord-001734-bbeznd3r 185 14 at at IN cord-001734-bbeznd3r 185 15 pH pH NNP cord-001734-bbeznd3r 185 16 4.0 4.0 CD cord-001734-bbeznd3r 185 17 , , , cord-001734-bbeznd3r 185 18 and and CC cord-001734-bbeznd3r 185 19 another another DT cord-001734-bbeznd3r 185 20 with with IN cord-001734-bbeznd3r 185 21 buffer buffer NN cord-001734-bbeznd3r 185 22 added add VBN cord-001734-bbeznd3r 185 23 to to TO cord-001734-bbeznd3r 185 24 reach reach VB cord-001734-bbeznd3r 185 25 pH pH NNP cord-001734-bbeznd3r 185 26 7.5 7.5 CD cord-001734-bbeznd3r 185 27 . . . cord-001734-bbeznd3r 186 1 As as IN cord-001734-bbeznd3r 186 2 shown show VBN cord-001734-bbeznd3r 186 3 in in IN cord-001734-bbeznd3r 186 4 Fig Fig NNP cord-001734-bbeznd3r 186 5 3A 3a CD cord-001734-bbeznd3r 186 6 , , , cord-001734-bbeznd3r 186 7 the the DT cord-001734-bbeznd3r 186 8 CD CD NNP cord-001734-bbeznd3r 186 9 spectrum spectrum NN cord-001734-bbeznd3r 186 10 of of IN cord-001734-bbeznd3r 186 11 the the DT cord-001734-bbeznd3r 186 12 mixture mixture NN cord-001734-bbeznd3r 186 13 in in IN cord-001734-bbeznd3r 186 14 buffer buffer NN cord-001734-bbeznd3r 186 15 at at IN cord-001734-bbeznd3r 186 16 pH pH NNP cord-001734-bbeznd3r 186 17 7.5 7.5 CD cord-001734-bbeznd3r 186 18 has have VBZ cord-001734-bbeznd3r 186 19 slight slight JJ cord-001734-bbeznd3r 186 20 changes change NNS cord-001734-bbeznd3r 186 21 : : : cord-001734-bbeznd3r 186 22 the the DT cord-001734-bbeznd3r 186 23 maximal maximal JJ cord-001734-bbeznd3r 186 24 positive positive JJ cord-001734-bbeznd3r 186 25 signal signal NN cord-001734-bbeznd3r 186 26 shifted shift VBD cord-001734-bbeznd3r 186 27 to to IN cord-001734-bbeznd3r 186 28 192 192 CD cord-001734-bbeznd3r 186 29 nm nm NN cord-001734-bbeznd3r 186 30 as as RB cord-001734-bbeznd3r 186 31 well well RB cord-001734-bbeznd3r 186 32 as as IN cord-001734-bbeznd3r 186 33 became become VBD cord-001734-bbeznd3r 186 34 larger large JJR cord-001734-bbeznd3r 186 35 ; ; : cord-001734-bbeznd3r 186 36 and and CC cord-001734-bbeznd3r 186 37 the the DT cord-001734-bbeznd3r 186 38 maximal maximal JJ cord-001734-bbeznd3r 186 39 negative negative JJ cord-001734-bbeznd3r 186 40 signal signal NN cord-001734-bbeznd3r 186 41 shifted shift VBD cord-001734-bbeznd3r 186 42 from from IN cord-001734-bbeznd3r 186 43 208 208 CD cord-001734-bbeznd3r 186 44 to to IN cord-001734-bbeznd3r 186 45 217 217 CD cord-001734-bbeznd3r 186 46 nm nm NN cord-001734-bbeznd3r 186 47 , , , cord-001734-bbeznd3r 186 48 almost almost RB cord-001734-bbeznd3r 186 49 identical identical JJ cord-001734-bbeznd3r 186 50 to to IN cord-001734-bbeznd3r 186 51 that that DT cord-001734-bbeznd3r 186 52 previously previously RB cord-001734-bbeznd3r 186 53 reported report VBN cord-001734-bbeznd3r 186 54 on on IN cord-001734-bbeznd3r 186 55 the the DT cord-001734-bbeznd3r 186 56 co co NN cord-001734-bbeznd3r 186 57 - - VBN cord-001734-bbeznd3r 186 58 expressed express VBN cord-001734-bbeznd3r 186 59 NS2B NS2B NNP cord-001734-bbeznd3r 186 60 - - HYPH cord-001734-bbeznd3r 186 61 NS3pro NS3pro NNP cord-001734-bbeznd3r 186 62 complex complex NN cord-001734-bbeznd3r 186 63 [ [ -LRB- cord-001734-bbeznd3r 186 64 10 10 CD cord-001734-bbeznd3r 186 65 ] ] -RRB- cord-001734-bbeznd3r 186 66 . . . cord-001734-bbeznd3r 187 1 This this DT cord-001734-bbeznd3r 187 2 change change NN cord-001734-bbeznd3r 187 3 appears appear VBZ cord-001734-bbeznd3r 187 4 to to TO cord-001734-bbeznd3r 187 5 result result VB cord-001734-bbeznd3r 187 6 from from IN cord-001734-bbeznd3r 187 7 the the DT cord-001734-bbeznd3r 187 8 slight slight JJ cord-001734-bbeznd3r 187 9 increase increase NN cord-001734-bbeznd3r 187 10 of of IN cord-001734-bbeznd3r 187 11 β β NN cord-001734-bbeznd3r 187 12 - - HYPH cord-001734-bbeznd3r 187 13 strand strand NN cord-001734-bbeznd3r 187 14 and and CC cord-001734-bbeznd3r 187 15 reduction reduction NN cord-001734-bbeznd3r 187 16 of of IN cord-001734-bbeznd3r 187 17 random random JJ cord-001734-bbeznd3r 187 18 coil coil NN cord-001734-bbeznd3r 187 19 conformations conformation NNS cord-001734-bbeznd3r 187 20 . . . cord-001734-bbeznd3r 188 1 The the DT cord-001734-bbeznd3r 188 2 slight slight JJ cord-001734-bbeznd3r 188 3 variations variation NNS cord-001734-bbeznd3r 188 4 in in IN cord-001734-bbeznd3r 188 5 CD cd NN cord-001734-bbeznd3r 188 6 spectra spectrum NNS cord-001734-bbeznd3r 188 7 of of IN cord-001734-bbeznd3r 188 8 the the DT cord-001734-bbeznd3r 188 9 refolded refolde VBN cord-001734-bbeznd3r 188 10 NS2B NS2B NNP cord-001734-bbeznd3r 188 11 - - HYPH cord-001734-bbeznd3r 188 12 NS3pro NS3pro NNP cord-001734-bbeznd3r 188 13 complex complex NN cord-001734-bbeznd3r 188 14 at at IN cord-001734-bbeznd3r 188 15 pH pH NNP cord-001734-bbeznd3r 188 16 4.0 4.0 CD cord-001734-bbeznd3r 188 17 and and CC cord-001734-bbeznd3r 188 18 7.5 7.5 CD cord-001734-bbeznd3r 188 19 suggest suggest VBP cord-001734-bbeznd3r 188 20 that that IN cord-001734-bbeznd3r 188 21 the the DT cord-001734-bbeznd3r 188 22 complex complex NN cord-001734-bbeznd3r 188 23 may may MD cord-001734-bbeznd3r 188 24 have have VB cord-001734-bbeznd3r 188 25 some some DT cord-001734-bbeznd3r 188 26 conformational conformational JJ cord-001734-bbeznd3r 188 27 differences difference NNS cord-001734-bbeznd3r 188 28 at at IN cord-001734-bbeznd3r 188 29 two two CD cord-001734-bbeznd3r 188 30 pH ph NN cord-001734-bbeznd3r 188 31 values value NNS cord-001734-bbeznd3r 188 32 . . . cord-001734-bbeznd3r 189 1 Indeed indeed RB cord-001734-bbeznd3r 189 2 , , , cord-001734-bbeznd3r 189 3 the the DT cord-001734-bbeznd3r 189 4 complex complex NN cord-001734-bbeznd3r 189 5 at at IN cord-001734-bbeznd3r 189 6 pH pH NNP cord-001734-bbeznd3r 189 7 4.0 4.0 CD cord-001734-bbeznd3r 189 8 has have VBZ cord-001734-bbeznd3r 189 9 a a DT cord-001734-bbeznd3r 189 10 HSQC HSQC NNP cord-001734-bbeznd3r 189 11 spectrum spectrum NN cord-001734-bbeznd3r 189 12 with with IN cord-001734-bbeznd3r 189 13 many many JJ cord-001734-bbeznd3r 189 14 HSQC HSQC NNP cord-001734-bbeznd3r 189 15 peaks peak NNS cord-001734-bbeznd3r 189 16 too too RB cord-001734-bbeznd3r 189 17 broad broad JJ cord-001734-bbeznd3r 189 18 to to TO cord-001734-bbeznd3r 189 19 be be VB cord-001734-bbeznd3r 189 20 detected detect VBN cord-001734-bbeznd3r 190 1 ( ( -LRB- cord-001734-bbeznd3r 190 2 Fig Fig NNP cord-001734-bbeznd3r 190 3 3C 3C NNP cord-001734-bbeznd3r 190 4 ) ) -RRB- cord-001734-bbeznd3r 190 5 , , , cord-001734-bbeznd3r 190 6 indicating indicate VBG cord-001734-bbeznd3r 190 7 that that IN cord-001734-bbeznd3r 190 8 the the DT cord-001734-bbeznd3r 190 9 complex complex NN cord-001734-bbeznd3r 190 10 undergoes undergo VBZ cord-001734-bbeznd3r 190 11 significant significant JJ cord-001734-bbeznd3r 190 12 dynamic dynamic JJ cord-001734-bbeznd3r 190 13 aggregation aggregation NN cord-001734-bbeznd3r 190 14 , , , cord-001734-bbeznd3r 190 15 or or CC cord-001734-bbeznd3r 190 16 / / SYM cord-001734-bbeznd3r 190 17 and and CC cord-001734-bbeznd3r 190 18 conformational conformational JJ cord-001734-bbeznd3r 190 19 exchanges exchange NNS cord-001734-bbeznd3r 190 20 on on IN cord-001734-bbeznd3r 190 21 the the DT cord-001734-bbeznd3r 190 22 μs μs NNP cord-001734-bbeznd3r 190 23 - - HYPH cord-001734-bbeznd3r 190 24 ms ms NNP cord-001734-bbeznd3r 190 25 time time NN cord-001734-bbeznd3r 190 26 scale scale NN cord-001734-bbeznd3r 190 27 . . . cord-001734-bbeznd3r 191 1 By by IN cord-001734-bbeznd3r 191 2 contrast contrast NN cord-001734-bbeznd3r 191 3 , , , cord-001734-bbeznd3r 191 4 the the DT cord-001734-bbeznd3r 191 5 refolded refolde VBN cord-001734-bbeznd3r 191 6 NS2B NS2B NNP cord-001734-bbeznd3r 191 7 - - HYPH cord-001734-bbeznd3r 191 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 191 9 complex complex NN cord-001734-bbeznd3r 191 10 at at IN cord-001734-bbeznd3r 191 11 pH pH NNP cord-001734-bbeznd3r 191 12 7.5 7.5 CD cord-001734-bbeznd3r 191 13 has have VBZ cord-001734-bbeznd3r 191 14 a a DT cord-001734-bbeznd3r 191 15 HSQC HSQC NNP cord-001734-bbeznd3r 191 16 spectrum spectrum NN cord-001734-bbeznd3r 191 17 typical typical NN cord-001734-bbeznd3r 191 18 of of IN cord-001734-bbeznd3r 191 19 a a DT cord-001734-bbeznd3r 191 20 well well RB cord-001734-bbeznd3r 191 21 - - HYPH cord-001734-bbeznd3r 191 22 folded fold VBN cord-001734-bbeznd3r 191 23 protein protein NN cord-001734-bbeznd3r 191 24 , , , cord-001734-bbeznd3r 191 25 which which WDT cord-001734-bbeznd3r 191 26 has have VBZ cord-001734-bbeznd3r 191 27 very very RB cord-001734-bbeznd3r 191 28 large large JJ cord-001734-bbeznd3r 191 29 spectral spectral JJ cord-001734-bbeznd3r 191 30 dispersions dispersion NNS cord-001734-bbeznd3r 191 31 at at IN cord-001734-bbeznd3r 191 32 both both DT cord-001734-bbeznd3r 191 33 1 1 CD cord-001734-bbeznd3r 191 34 H h NN cord-001734-bbeznd3r 191 35 ( ( -LRB- cord-001734-bbeznd3r 191 36 ~3.6 ~3.6 CD cord-001734-bbeznd3r 191 37 ppm ppm NN cord-001734-bbeznd3r 191 38 ) ) -RRB- cord-001734-bbeznd3r 191 39 and and CC cord-001734-bbeznd3r 191 40 15 15 CD cord-001734-bbeznd3r 191 41 N n CD cord-001734-bbeznd3r 191 42 ( ( -LRB- cord-001734-bbeznd3r 191 43 ~28 ~28 NFP cord-001734-bbeznd3r 191 44 ppm ppm NN cord-001734-bbeznd3r 191 45 ) ) -RRB- cord-001734-bbeznd3r 191 46 dimensions dimension NNS cord-001734-bbeznd3r 191 47 ( ( -LRB- cord-001734-bbeznd3r 191 48 Fig Fig NNP cord-001734-bbeznd3r 191 49 3D 3d NN cord-001734-bbeznd3r 191 50 ) ) -RRB- cord-001734-bbeznd3r 191 51 . . . cord-001734-bbeznd3r 192 1 In in IN cord-001734-bbeznd3r 192 2 particular particular JJ cord-001734-bbeznd3r 192 3 , , , cord-001734-bbeznd3r 192 4 although although IN cord-001734-bbeznd3r 192 5 in in IN cord-001734-bbeznd3r 192 6 the the DT cord-001734-bbeznd3r 192 7 present present JJ cord-001734-bbeznd3r 192 8 study study NN cord-001734-bbeznd3r 192 9 the the DT cord-001734-bbeznd3r 192 10 NS2B NS2B NNP cord-001734-bbeznd3r 192 11 peptide peptide NN cord-001734-bbeznd3r 192 12 is be VBZ cord-001734-bbeznd3r 192 13 unlabelled unlabelled JJ cord-001734-bbeznd3r 192 14 , , , cord-001734-bbeznd3r 192 15 a a DT cord-001734-bbeznd3r 192 16 large large JJ cord-001734-bbeznd3r 192 17 portion portion NN cord-001734-bbeznd3r 192 18 of of IN cord-001734-bbeznd3r 192 19 the the DT cord-001734-bbeznd3r 192 20 HSQC HSQC NNP cord-001734-bbeznd3r 192 21 peaks peak NNS cord-001734-bbeznd3r 192 22 of of IN cord-001734-bbeznd3r 192 23 the the DT cord-001734-bbeznd3r 192 24 present present JJ cord-001734-bbeznd3r 192 25 NS3pro ns3pro NN cord-001734-bbeznd3r 192 26 domain domain NN cord-001734-bbeznd3r 192 27 are be VBP cord-001734-bbeznd3r 192 28 almost almost RB cord-001734-bbeznd3r 192 29 superimposable superimposable JJ cord-001734-bbeznd3r 192 30 to to IN cord-001734-bbeznd3r 192 31 those those DT cord-001734-bbeznd3r 192 32 of of IN cord-001734-bbeznd3r 192 33 the the DT cord-001734-bbeznd3r 192 34 previous previous JJ cord-001734-bbeznd3r 192 35 complex complex NN cord-001734-bbeznd3r 192 36 with with IN cord-001734-bbeznd3r 192 37 both both DT cord-001734-bbeznd3r 192 38 NS2B NS2B NNP cord-001734-bbeznd3r 192 39 and and CC cord-001734-bbeznd3r 192 40 NS3pro NS3pro NNP cord-001734-bbeznd3r 192 41 15 15 CD cord-001734-bbeznd3r 192 42 N n CD cord-001734-bbeznd3r 192 43 - - HYPH cord-001734-bbeznd3r 192 44 labelled label VBN cord-001734-bbeznd3r 192 45 and and CC cord-001734-bbeznd3r 192 46 co co NNS cord-001734-bbeznd3r 192 47 - - VBN cord-001734-bbeznd3r 192 48 expressed express VBN cord-001734-bbeznd3r 192 49 [ [ -LRB- cord-001734-bbeznd3r 192 50 10 10 CD cord-001734-bbeznd3r 192 51 , , , cord-001734-bbeznd3r 192 52 11 11 CD cord-001734-bbeznd3r 192 53 ] ] -RRB- cord-001734-bbeznd3r 192 54 , , , cord-001734-bbeznd3r 192 55 as as IN cord-001734-bbeznd3r 192 56 exemplified exemplify VBN cord-001734-bbeznd3r 192 57 by by IN cord-001734-bbeznd3r 192 58 the the DT cord-001734-bbeznd3r 192 59 characteristic characteristic JJ cord-001734-bbeznd3r 192 60 HSQC HSQC NNP cord-001734-bbeznd3r 192 61 peaks peak NNS cord-001734-bbeznd3r 192 62 ( ( -LRB- cord-001734-bbeznd3r 192 63 green green NNP cord-001734-bbeznd3r 192 64 cycled cycle VBN cord-001734-bbeznd3r 192 65 ) ) -RRB- cord-001734-bbeznd3r 192 66 , , , cord-001734-bbeznd3r 192 67 Furthermore furthermore RB cord-001734-bbeznd3r 192 68 , , , cord-001734-bbeznd3r 192 69 the the DT cord-001734-bbeznd3r 192 70 addition addition NN cord-001734-bbeznd3r 192 71 of of IN cord-001734-bbeznd3r 192 72 the the DT cord-001734-bbeznd3r 192 73 protease protease JJ cord-001734-bbeznd3r 192 74 inhibitor inhibitor NN cord-001734-bbeznd3r 192 75 p p NN cord-001734-bbeznd3r 192 76 - - : cord-001734-bbeznd3r 192 77 Nitrophenyl Nitrophenyl NNP cord-001734-bbeznd3r 192 78 - - HYPH cord-001734-bbeznd3r 192 79 p p NN cord-001734-bbeznd3r 192 80 - - HYPH cord-001734-bbeznd3r 192 81 guanidino guanidino JJ cord-001734-bbeznd3r 192 82 benzoate benzoate NN cord-001734-bbeznd3r 192 83 previously previously RB cord-001734-bbeznd3r 192 84 used use VBD cord-001734-bbeznd3r 192 85 [ [ -LRB- cord-001734-bbeznd3r 192 86 11 11 CD cord-001734-bbeznd3r 192 87 ] ] -RRB- cord-001734-bbeznd3r 192 88 triggered trigger VBN cord-001734-bbeznd3r 192 89 dramatic dramatic JJ cord-001734-bbeznd3r 192 90 shifts shift NNS cord-001734-bbeznd3r 192 91 of of IN cord-001734-bbeznd3r 192 92 many many JJ cord-001734-bbeznd3r 192 93 HSQC HSQC NNP cord-001734-bbeznd3r 192 94 peaks peak NNS cord-001734-bbeznd3r 192 95 , , , cord-001734-bbeznd3r 192 96 indicating indicate VBG cord-001734-bbeznd3r 192 97 the the DT cord-001734-bbeznd3r 192 98 refolded refolde VBN cord-001734-bbeznd3r 192 99 NS2B NS2B NNP cord-001734-bbeznd3r 192 100 - - HYPH cord-001734-bbeznd3r 192 101 NS3pro NS3pro NNP cord-001734-bbeznd3r 192 102 is be VBZ cord-001734-bbeznd3r 192 103 active active JJ cord-001734-bbeznd3r 192 104 in in IN cord-001734-bbeznd3r 192 105 binding bind VBG cord-001734-bbeznd3r 192 106 the the DT cord-001734-bbeznd3r 192 107 inhibitor inhibitor NN cord-001734-bbeznd3r 192 108 ( ( -LRB- cord-001734-bbeznd3r 192 109 Fig Fig NNP cord-001734-bbeznd3r 192 110 3E 3E NNP cord-001734-bbeznd3r 192 111 ) ) -RRB- cord-001734-bbeznd3r 192 112 . . . cord-001734-bbeznd3r 193 1 We -PRON- PRP cord-001734-bbeznd3r 193 2 measured measure VBD cord-001734-bbeznd3r 193 3 the the DT cord-001734-bbeznd3r 193 4 enzymatic enzymatic JJ cord-001734-bbeznd3r 193 5 activity activity NN cord-001734-bbeznd3r 193 6 of of IN cord-001734-bbeznd3r 193 7 the the DT cord-001734-bbeznd3r 193 8 complex complex NN cord-001734-bbeznd3r 193 9 refolded refolde VBD cord-001734-bbeznd3r 193 10 at at IN cord-001734-bbeznd3r 193 11 pH pH NNP cord-001734-bbeznd3r 193 12 4.0 4.0 CD cord-001734-bbeznd3r 193 13 in in IN cord-001734-bbeznd3r 193 14 two two CD cord-001734-bbeznd3r 193 15 buffers buffer NNS cord-001734-bbeznd3r 193 16 : : : cord-001734-bbeznd3r 193 17 one one CD cord-001734-bbeznd3r 193 18 at at IN cord-001734-bbeznd3r 193 19 pH pH NNP cord-001734-bbeznd3r 193 20 4.0 4.0 CD cord-001734-bbeznd3r 193 21 and and CC cord-001734-bbeznd3r 193 22 another another DT cord-001734-bbeznd3r 193 23 at at IN cord-001734-bbeznd3r 193 24 pH pH NNP cord-001734-bbeznd3r 193 25 7.5 7.5 CD cord-001734-bbeznd3r 193 26 . . . cord-001734-bbeznd3r 194 1 Interestingly interestingly RB cord-001734-bbeznd3r 194 2 , , , cord-001734-bbeznd3r 194 3 it -PRON- PRP cord-001734-bbeznd3r 194 4 has have VBZ cord-001734-bbeznd3r 194 5 no no DT cord-001734-bbeznd3r 194 6 detectable detectable JJ cord-001734-bbeznd3r 194 7 activity activity NN cord-001734-bbeznd3r 194 8 in in IN cord-001734-bbeznd3r 194 9 the the DT cord-001734-bbeznd3r 194 10 acetate acetate NN cord-001734-bbeznd3r 194 11 buffer buffer NN cord-001734-bbeznd3r 194 12 at at IN cord-001734-bbeznd3r 194 13 pH pH NNP cord-001734-bbeznd3r 194 14 4.0 4.0 CD cord-001734-bbeznd3r 194 15 even even RB cord-001734-bbeznd3r 194 16 with with IN cord-001734-bbeznd3r 194 17 the the DT cord-001734-bbeznd3r 194 18 protein protein NN cord-001734-bbeznd3r 194 19 concentration concentration NN cord-001734-bbeznd3r 194 20 reaching reach VBG cord-001734-bbeznd3r 194 21 5 5 CD cord-001734-bbeznd3r 195 1 μM. μM. NNP cord-001734-bbeznd3r 196 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 196 2 , , , cord-001734-bbeznd3r 196 3 if if IN cord-001734-bbeznd3r 196 4 the the DT cord-001734-bbeznd3r 196 5 sample sample NN cord-001734-bbeznd3r 196 6 refolded refolde VBD cord-001734-bbeznd3r 196 7 at at IN cord-001734-bbeznd3r 196 8 pH pH NNP cord-001734-bbeznd3r 196 9 4.0 4.0 CD cord-001734-bbeznd3r 196 10 was be VBD cord-001734-bbeznd3r 196 11 measured measure VBN cord-001734-bbeznd3r 196 12 in in IN cord-001734-bbeznd3r 196 13 the the DT cord-001734-bbeznd3r 196 14 buffer buffer NN cord-001734-bbeznd3r 196 15 at at IN cord-001734-bbeznd3r 196 16 pH pH NNP cord-001734-bbeznd3r 196 17 7.5 7.5 CD cord-001734-bbeznd3r 196 18 , , , cord-001734-bbeznd3r 196 19 it -PRON- PRP cord-001734-bbeznd3r 196 20 is be VBZ cord-001734-bbeznd3r 196 21 highly highly RB cord-001734-bbeznd3r 196 22 active active JJ cord-001734-bbeznd3r 196 23 with with IN cord-001734-bbeznd3r 196 24 no no DT cord-001734-bbeznd3r 196 25 detectable detectable JJ cord-001734-bbeznd3r 196 26 difference difference NN cord-001734-bbeznd3r 196 27 from from IN cord-001734-bbeznd3r 196 28 that that DT cord-001734-bbeznd3r 196 29 refolded refolde VBD cord-001734-bbeznd3r 196 30 in in IN cord-001734-bbeznd3r 196 31 the the DT cord-001734-bbeznd3r 196 32 buffer buffer NN cord-001734-bbeznd3r 196 33 at at IN cord-001734-bbeznd3r 196 34 pH pH NNP cord-001734-bbeznd3r 196 35 7.5 7.5 CD cord-001734-bbeznd3r 197 1 ( ( -LRB- cord-001734-bbeznd3r 197 2 Fig Fig NNP cord-001734-bbeznd3r 197 3 3B 3b CD cord-001734-bbeznd3r 197 4 ) ) -RRB- cord-001734-bbeznd3r 197 5 . . . cord-001734-bbeznd3r 198 1 The the DT cord-001734-bbeznd3r 198 2 enzymatic enzymatic JJ cord-001734-bbeznd3r 198 3 parameters parameter NNS cord-001734-bbeznd3r 198 4 of of IN cord-001734-bbeznd3r 198 5 the the DT cord-001734-bbeznd3r 198 6 refolded refolde VBN cord-001734-bbeznd3r 198 7 NS2B NS2B NNP cord-001734-bbeznd3r 198 8 - - HYPH cord-001734-bbeznd3r 198 9 NS3pro NS3pro NNP cord-001734-bbeznd3r 198 10 complex complex NN cord-001734-bbeznd3r 198 11 in in IN cord-001734-bbeznd3r 198 12 the the DT cord-001734-bbeznd3r 198 13 buffer buffer NN cord-001734-bbeznd3r 198 14 at at IN cord-001734-bbeznd3r 198 15 pH pH NNP cord-001734-bbeznd3r 198 16 7.5 7.5 CD cord-001734-bbeznd3r 198 17 were be VBD cord-001734-bbeznd3r 198 18 obtained obtain VBN cord-001734-bbeznd3r 198 19 with with IN cord-001734-bbeznd3r 198 20 Km km NN cord-001734-bbeznd3r 198 21 = = NFP cord-001734-bbeznd3r 199 1 92.39 92.39 CD cord-001734-bbeznd3r 199 2 ± ± CD cord-001734-bbeznd3r 199 3 9.94 9.94 CD cord-001734-bbeznd3r 200 1 μM μM NNP cord-001734-bbeznd3r 200 2 and and CC cord-001734-bbeznd3r 200 3 Kcat Kcat NNP cord-001734-bbeznd3r 200 4 = = SYM cord-001734-bbeznd3r 200 5 0.15 0.15 CD cord-001734-bbeznd3r 200 6 ± ± CD cord-001734-bbeznd3r 200 7 0.01 0.01 CD cord-001734-bbeznd3r 200 8 s s NNP cord-001734-bbeznd3r 200 9 -1 -1 NN cord-001734-bbeznd3r 200 10 , , , cord-001734-bbeznd3r 200 11 which which WDT cord-001734-bbeznd3r 200 12 are be VBP cord-001734-bbeznd3r 200 13 very very RB cord-001734-bbeznd3r 200 14 similar similar JJ cord-001734-bbeznd3r 200 15 to to IN cord-001734-bbeznd3r 200 16 the the DT cord-001734-bbeznd3r 200 17 previous previous JJ cord-001734-bbeznd3r 200 18 results result NNS cord-001734-bbeznd3r 200 19 with with IN cord-001734-bbeznd3r 200 20 a a DT cord-001734-bbeznd3r 200 21 co co NN cord-001734-bbeznd3r 200 22 - - VBN cord-001734-bbeznd3r 200 23 expressed express VBN cord-001734-bbeznd3r 200 24 NS2B NS2B NNP cord-001734-bbeznd3r 200 25 - - HYPH cord-001734-bbeznd3r 200 26 NS3pro NS3pro NNP cord-001734-bbeznd3r 200 27 complex complex NN cord-001734-bbeznd3r 200 28 [ [ -LRB- cord-001734-bbeznd3r 200 29 10 10 CD cord-001734-bbeznd3r 200 30 ] ] -RRB- cord-001734-bbeznd3r 200 31 . . . cord-001734-bbeznd3r 201 1 The the DT cord-001734-bbeznd3r 201 2 structure structure NN cord-001734-bbeznd3r 201 3 and and CC cord-001734-bbeznd3r 201 4 enzymatic enzymatic JJ cord-001734-bbeznd3r 201 5 activity activity NN cord-001734-bbeznd3r 201 6 revealed reveal VBD cord-001734-bbeznd3r 201 7 that that IN cord-001734-bbeznd3r 201 8 once once RB cord-001734-bbeznd3r 201 9 NS2B NS2B NNP cord-001734-bbeznd3r 201 10 and and CC cord-001734-bbeznd3r 201 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 201 12 meet meet VBP cord-001734-bbeznd3r 201 13 , , , cord-001734-bbeznd3r 201 14 they -PRON- PRP cord-001734-bbeznd3r 201 15 will will MD cord-001734-bbeznd3r 201 16 bind bind VB cord-001734-bbeznd3r 201 17 to to IN cord-001734-bbeznd3r 201 18 each each DT cord-001734-bbeznd3r 201 19 other other JJ cord-001734-bbeznd3r 201 20 and and CC cord-001734-bbeznd3r 201 21 initiate initiate VB cord-001734-bbeznd3r 201 22 the the DT cord-001734-bbeznd3r 201 23 folding folding NN cord-001734-bbeznd3r 201 24 process process NN cord-001734-bbeznd3r 201 25 to to TO cord-001734-bbeznd3r 201 26 form form VB cord-001734-bbeznd3r 201 27 the the DT cord-001734-bbeznd3r 201 28 two two CD cord-001734-bbeznd3r 201 29 - - HYPH cord-001734-bbeznd3r 201 30 component component NN cord-001734-bbeznd3r 201 31 complex complex NN cord-001734-bbeznd3r 201 32 . . . cord-001734-bbeznd3r 202 1 However however RB cord-001734-bbeznd3r 202 2 , , , cord-001734-bbeznd3r 202 3 it -PRON- PRP cord-001734-bbeznd3r 202 4 seems seem VBZ cord-001734-bbeznd3r 202 5 that that IN cord-001734-bbeznd3r 202 6 if if IN cord-001734-bbeznd3r 202 7 at at IN cord-001734-bbeznd3r 202 8 pH pH NNP cord-001734-bbeznd3r 202 9 4.0 4.0 CD cord-001734-bbeznd3r 202 10 , , , cord-001734-bbeznd3r 202 11 the the DT cord-001734-bbeznd3r 202 12 NS2B NS2B NNP cord-001734-bbeznd3r 202 13 - - HYPH cord-001734-bbeznd3r 202 14 NS3pro ns3pro NN cord-001734-bbeznd3r 202 15 complex complex NN cord-001734-bbeznd3r 202 16 exists exist VBZ cord-001734-bbeznd3r 202 17 as as IN cord-001734-bbeznd3r 202 18 an an DT cord-001734-bbeznd3r 202 19 intermediate intermediate NN cord-001734-bbeznd3r 202 20 which which WDT cord-001734-bbeznd3r 202 21 already already RB cord-001734-bbeznd3r 202 22 has have VBZ cord-001734-bbeznd3r 202 23 substantial substantial JJ cord-001734-bbeznd3r 202 24 secondary secondary JJ cord-001734-bbeznd3r 202 25 structures structure NNS cord-001734-bbeznd3r 202 26 and and CC cord-001734-bbeznd3r 202 27 tertiary tertiary JJ cord-001734-bbeznd3r 202 28 packing packing NN cord-001734-bbeznd3r 202 29 . . . cord-001734-bbeznd3r 203 1 However however RB cord-001734-bbeznd3r 203 2 , , , cord-001734-bbeznd3r 203 3 the the DT cord-001734-bbeznd3r 203 4 tight tight JJ cord-001734-bbeznd3r 203 5 tertiary tertiary JJ cord-001734-bbeznd3r 203 6 packing packing NN cord-001734-bbeznd3r 203 7 is be VBZ cord-001734-bbeznd3r 203 8 not not RB cord-001734-bbeznd3r 203 9 completely completely RB cord-001734-bbeznd3r 203 10 achieved achieve VBN cord-001734-bbeznd3r 203 11 and and CC cord-001734-bbeznd3r 203 12 consequently consequently RB cord-001734-bbeznd3r 203 13 the the DT cord-001734-bbeznd3r 203 14 complex complex JJ cord-001734-bbeznd3r 203 15 undergoes undergo VBZ cord-001734-bbeznd3r 203 16 μs μs NNP cord-001734-bbeznd3r 203 17 - - HYPH cord-001734-bbeznd3r 203 18 ms ms NNP cord-001734-bbeznd3r 203 19 conformational conformational JJ cord-001734-bbeznd3r 203 20 exchanges exchange NNS cord-001734-bbeznd3r 203 21 , , , cord-001734-bbeznd3r 203 22 very very RB cord-001734-bbeznd3r 203 23 similar similar JJ cord-001734-bbeznd3r 203 24 to to IN cord-001734-bbeznd3r 203 25 what what WP cord-001734-bbeznd3r 203 26 we -PRON- PRP cord-001734-bbeznd3r 203 27 previously previously RB cord-001734-bbeznd3r 203 28 observed observe VBD cord-001734-bbeznd3r 203 29 on on IN cord-001734-bbeznd3r 203 30 a a DT cord-001734-bbeznd3r 203 31 molten molten JJ cord-001734-bbeznd3r 203 32 globule globule NN cord-001734-bbeznd3r 203 33 formed form VBN cord-001734-bbeznd3r 203 34 by by IN cord-001734-bbeznd3r 203 35 a a DT cord-001734-bbeznd3r 203 36 small small JJ cord-001734-bbeznd3r 203 37 protein protein NN cord-001734-bbeznd3r 203 38 at at IN cord-001734-bbeznd3r 203 39 pH pH NNP cord-001734-bbeznd3r 203 40 4.0 4.0 CD cord-001734-bbeznd3r 203 41 [ [ -LRB- cord-001734-bbeznd3r 203 42 39 39 CD cord-001734-bbeznd3r 203 43 , , , cord-001734-bbeznd3r 203 44 40 40 CD cord-001734-bbeznd3r 203 45 ] ] -RRB- cord-001734-bbeznd3r 203 46 . . . cord-001734-bbeznd3r 204 1 The the DT cord-001734-bbeznd3r 204 2 intermediate intermediate NN cord-001734-bbeznd3r 204 3 of of IN cord-001734-bbeznd3r 204 4 the the DT cord-001734-bbeznd3r 204 5 NS2B NS2B NNP cord-001734-bbeznd3r 204 6 - - HYPH cord-001734-bbeznd3r 204 7 NS3pro NS3pro NNP cord-001734-bbeznd3r 204 8 complex complex NN cord-001734-bbeznd3r 204 9 at at IN cord-001734-bbeznd3r 204 10 pH pH NNP cord-001734-bbeznd3r 204 11 4.0 4.0 CD cord-001734-bbeznd3r 204 12 is be VBZ cord-001734-bbeznd3r 204 13 enzymatically enzymatically RB cord-001734-bbeznd3r 204 14 inactive inactive JJ cord-001734-bbeznd3r 204 15 , , , cord-001734-bbeznd3r 204 16 but but CC cord-001734-bbeznd3r 204 17 nevertheless nevertheless RB cord-001734-bbeznd3r 204 18 , , , cord-001734-bbeznd3r 204 19 once once IN cord-001734-bbeznd3r 204 20 it -PRON- PRP cord-001734-bbeznd3r 204 21 is be VBZ cord-001734-bbeznd3r 204 22 transferred transfer VBN cord-001734-bbeznd3r 204 23 into into IN cord-001734-bbeznd3r 204 24 the the DT cord-001734-bbeznd3r 204 25 buffer buffer NN cord-001734-bbeznd3r 204 26 at at IN cord-001734-bbeznd3r 204 27 pH pH NNP cord-001734-bbeznd3r 204 28 7.5 7.5 CD cord-001734-bbeznd3r 204 29 , , , cord-001734-bbeznd3r 204 30 the the DT cord-001734-bbeznd3r 204 31 tightly tightly RB cord-001734-bbeznd3r 204 32 - - HYPH cord-001734-bbeznd3r 204 33 packed pack VBN cord-001734-bbeznd3r 204 34 structure structure NN cord-001734-bbeznd3r 204 35 will will MD cord-001734-bbeznd3r 204 36 immediately immediately RB cord-001734-bbeznd3r 204 37 form form VB cord-001734-bbeznd3r 204 38 and and CC cord-001734-bbeznd3r 204 39 the the DT cord-001734-bbeznd3r 204 40 complex complex NN cord-001734-bbeznd3r 204 41 can can MD cord-001734-bbeznd3r 204 42 reach reach VB cord-001734-bbeznd3r 204 43 the the DT cord-001734-bbeznd3r 204 44 fully fully RB cord-001734-bbeznd3r 204 45 active active JJ cord-001734-bbeznd3r 204 46 state state NN cord-001734-bbeznd3r 204 47 . . . cord-001734-bbeznd3r 205 1 To to TO cord-001734-bbeznd3r 205 2 study study VB cord-001734-bbeznd3r 205 3 the the DT cord-001734-bbeznd3r 205 4 structure structure NN cord-001734-bbeznd3r 205 5 and and CC cord-001734-bbeznd3r 205 6 activity activity NN cord-001734-bbeznd3r 205 7 of of IN cord-001734-bbeznd3r 205 8 the the DT cord-001734-bbeznd3r 205 9 NS3pro NS3pro NNP cord-001734-bbeznd3r 205 10 in in IN cord-001734-bbeznd3r 205 11 complex complex NN cord-001734-bbeznd3r 205 12 with with IN cord-001734-bbeznd3r 205 13 the the DT cord-001734-bbeznd3r 205 14 full full JJ cord-001734-bbeznd3r 205 15 - - HYPH cord-001734-bbeznd3r 205 16 length length NN cord-001734-bbeznd3r 205 17 NS2B NS2B NNP cord-001734-bbeznd3r 205 18 ( ( -LRB- cord-001734-bbeznd3r 205 19 1 1 CD cord-001734-bbeznd3r 205 20 - - SYM cord-001734-bbeznd3r 205 21 130 130 CD cord-001734-bbeznd3r 205 22 ) ) -RRB- cord-001734-bbeznd3r 205 23 , , , cord-001734-bbeznd3r 205 24 which which WDT cord-001734-bbeznd3r 205 25 is be VBZ cord-001734-bbeznd3r 205 26 expected expect VBN cord-001734-bbeznd3r 205 27 to to TO cord-001734-bbeznd3r 205 28 be be VB cord-001734-bbeznd3r 205 29 anchored anchor VBN cord-001734-bbeznd3r 205 30 into into IN cord-001734-bbeznd3r 205 31 the the DT cord-001734-bbeznd3r 205 32 membranes membrane NNS cord-001734-bbeznd3r 205 33 by by IN cord-001734-bbeznd3r 205 34 forming form VBG cord-001734-bbeznd3r 205 35 the the DT cord-001734-bbeznd3r 205 36 transmembrane transmembrane NN cord-001734-bbeznd3r 205 37 helices helix NNS cord-001734-bbeznd3r 205 38 at at IN cord-001734-bbeznd3r 205 39 both both CC cord-001734-bbeznd3r 205 40 N N NNP cord-001734-bbeznd3r 205 41 - - HYPH cord-001734-bbeznd3r 205 42 and and CC cord-001734-bbeznd3r 205 43 C C NNP cord-001734-bbeznd3r 205 44 - - HYPH cord-001734-bbeznd3r 205 45 termini termini NNP cord-001734-bbeznd3r 205 46 , , , cord-001734-bbeznd3r 205 47 the the DT cord-001734-bbeznd3r 205 48 DNA dna NN cord-001734-bbeznd3r 205 49 fragment fragment NN cord-001734-bbeznd3r 205 50 encoding encoding NN cord-001734-bbeznd3r 206 1 the the DT cord-001734-bbeznd3r 206 2 full full JJ cord-001734-bbeznd3r 206 3 - - HYPH cord-001734-bbeznd3r 206 4 length length NN cord-001734-bbeznd3r 206 5 NS2B NS2B NNP cord-001734-bbeznd3r 206 6 ( ( -LRB- cord-001734-bbeznd3r 206 7 1 1 CD cord-001734-bbeznd3r 206 8 - - SYM cord-001734-bbeznd3r 206 9 130 130 CD cord-001734-bbeznd3r 206 10 ) ) -RRB- cord-001734-bbeznd3r 206 11 was be VBD cord-001734-bbeznd3r 206 12 cloned clone VBN cord-001734-bbeznd3r 206 13 into into IN cord-001734-bbeznd3r 206 14 pET28a pet28a JJ cord-001734-bbeznd3r 206 15 vector vector NN cord-001734-bbeznd3r 206 16 and and CC cord-001734-bbeznd3r 206 17 the the DT cord-001734-bbeznd3r 206 18 NS2B NS2B NNP cord-001734-bbeznd3r 207 1 ( ( -LRB- cord-001734-bbeznd3r 207 2 1 1 CD cord-001734-bbeznd3r 207 3 - - SYM cord-001734-bbeznd3r 207 4 130 130 CD cord-001734-bbeznd3r 207 5 ) ) -RRB- cord-001734-bbeznd3r 207 6 protein protein NN cord-001734-bbeznd3r 207 7 was be VBD cord-001734-bbeznd3r 207 8 purified purify VBN cord-001734-bbeznd3r 207 9 under under IN cord-001734-bbeznd3r 207 10 denaturing denature VBG cord-001734-bbeznd3r 207 11 condition condition NN cord-001734-bbeznd3r 207 12 . . . cord-001734-bbeznd3r 208 1 The the DT cord-001734-bbeznd3r 208 2 full full JJ cord-001734-bbeznd3r 208 3 - - HYPH cord-001734-bbeznd3r 208 4 length length NN cord-001734-bbeznd3r 208 5 NS2B NS2B NNP cord-001734-bbeznd3r 208 6 ( ( -LRB- cord-001734-bbeznd3r 208 7 1 1 CD cord-001734-bbeznd3r 208 8 - - SYM cord-001734-bbeznd3r 208 9 130 130 CD cord-001734-bbeznd3r 208 10 ) ) -RRB- cord-001734-bbeznd3r 208 11 was be VBD cord-001734-bbeznd3r 208 12 reconstituted reconstitute VBN cord-001734-bbeznd3r 208 13 in in IN cord-001734-bbeznd3r 208 14 the the DT cord-001734-bbeznd3r 208 15 LMPC LMPC NNP cord-001734-bbeznd3r 208 16 micelle micelle NN cord-001734-bbeznd3r 208 17 at at IN cord-001734-bbeznd3r 208 18 a a DT cord-001734-bbeznd3r 208 19 molar molar JJ cord-001734-bbeznd3r 208 20 ratio ratio NN cord-001734-bbeznd3r 208 21 of of IN cord-001734-bbeznd3r 208 22 1:200 1:200 CD cord-001734-bbeznd3r 209 1 ( ( -LRB- cord-001734-bbeznd3r 209 2 NS2B NS2B NNP cord-001734-bbeznd3r 209 3 : : : cord-001734-bbeznd3r 209 4 LMPC LMPC NNP cord-001734-bbeznd3r 209 5 ) ) -RRB- cord-001734-bbeznd3r 210 1 in in IN cord-001734-bbeznd3r 210 2 buffer buffer NN cord-001734-bbeznd3r 210 3 ( ( -LRB- cord-001734-bbeznd3r 210 4 pH pH NNP cord-001734-bbeznd3r 210 5 7.5 7.5 CD cord-001734-bbeznd3r 210 6 ) ) -RRB- cord-001734-bbeznd3r 210 7 . . . cord-001734-bbeznd3r 211 1 Furthermore furthermore RB cord-001734-bbeznd3r 211 2 , , , cord-001734-bbeznd3r 211 3 NS3pro NS3pro NNP cord-001734-bbeznd3r 211 4 and and CC cord-001734-bbeznd3r 211 5 NS2B NS2B NNP cord-001734-bbeznd3r 211 6 ( ( -LRB- cord-001734-bbeznd3r 211 7 1 1 CD cord-001734-bbeznd3r 211 8 - - SYM cord-001734-bbeznd3r 211 9 130 130 CD cord-001734-bbeznd3r 211 10 ) ) -RRB- cord-001734-bbeznd3r 211 11 were be VBD cord-001734-bbeznd3r 211 12 also also RB cord-001734-bbeznd3r 211 13 refolded refolde VBN cord-001734-bbeznd3r 211 14 together together RB cord-001734-bbeznd3r 211 15 at at IN cord-001734-bbeznd3r 211 16 the the DT cord-001734-bbeznd3r 211 17 equimolar equimolar JJ cord-001734-bbeznd3r 211 18 concentrations concentration NNS cord-001734-bbeznd3r 211 19 in in IN cord-001734-bbeznd3r 211 20 presence presence NN cord-001734-bbeznd3r 211 21 of of IN cord-001734-bbeznd3r 211 22 LMPC LMPC NNP cord-001734-bbeznd3r 211 23 in in IN cord-001734-bbeznd3r 211 24 buffer buffer NN cord-001734-bbeznd3r 211 25 ( ( -LRB- cord-001734-bbeznd3r 211 26 pH pH NNP cord-001734-bbeznd3r 211 27 7.5 7.5 CD cord-001734-bbeznd3r 211 28 ) ) -RRB- cord-001734-bbeznd3r 211 29 . . . cord-001734-bbeznd3r 212 1 Interestingly interestingly RB cord-001734-bbeznd3r 212 2 , , , cord-001734-bbeznd3r 212 3 the the DT cord-001734-bbeznd3r 212 4 far far JJ cord-001734-bbeznd3r 212 5 - - HYPH cord-001734-bbeznd3r 212 6 UV uv NN cord-001734-bbeznd3r 212 7 CD cd NN cord-001734-bbeznd3r 212 8 spectrum spectrum NN cord-001734-bbeznd3r 212 9 of of IN cord-001734-bbeznd3r 212 10 the the DT cord-001734-bbeznd3r 212 11 full full JJ cord-001734-bbeznd3r 212 12 - - HYPH cord-001734-bbeznd3r 212 13 length length NN cord-001734-bbeznd3r 212 14 NS2B NS2B NNP cord-001734-bbeznd3r 212 15 ( ( -LRB- cord-001734-bbeznd3r 212 16 1 1 CD cord-001734-bbeznd3r 212 17 - - SYM cord-001734-bbeznd3r 212 18 130 130 CD cord-001734-bbeznd3r 212 19 ) ) -RRB- cord-001734-bbeznd3r 212 20 reconstituted reconstitute VBN cord-001734-bbeznd3r 212 21 in in IN cord-001734-bbeznd3r 212 22 the the DT cord-001734-bbeznd3r 212 23 LMPC LMPC NNP cord-001734-bbeznd3r 212 24 micelle micelle NN cord-001734-bbeznd3r 212 25 have have VBP cord-001734-bbeznd3r 212 26 the the DT cord-001734-bbeznd3r 212 27 maximal maximal JJ cord-001734-bbeznd3r 212 28 negative negative JJ cord-001734-bbeznd3r 212 29 signal signal NN cord-001734-bbeznd3r 212 30 at at IN cord-001734-bbeznd3r 212 31 209 209 CD cord-001734-bbeznd3r 212 32 nm nm NN cord-001734-bbeznd3r 212 33 and and CC cord-001734-bbeznd3r 212 34 positive positive JJ cord-001734-bbeznd3r 212 35 signal signal NN cord-001734-bbeznd3r 212 36 at at IN cord-001734-bbeznd3r 212 37 192 192 CD cord-001734-bbeznd3r 212 38 nm nm NN cord-001734-bbeznd3r 212 39 , , , cord-001734-bbeznd3r 212 40 as as RB cord-001734-bbeznd3r 212 41 well well RB cord-001734-bbeznd3r 212 42 as as IN cord-001734-bbeznd3r 212 43 an an DT cord-001734-bbeznd3r 212 44 additional additional JJ cord-001734-bbeznd3r 212 45 negative negative JJ cord-001734-bbeznd3r 212 46 signal signal NN cord-001734-bbeznd3r 212 47 at at IN cord-001734-bbeznd3r 212 48 222 222 CD cord-001734-bbeznd3r 212 49 nm nm NN cord-001734-bbeznd3r 212 50 ( ( -LRB- cord-001734-bbeznd3r 212 51 Fig fig NN cord-001734-bbeznd3r 212 52 4A 4a CD cord-001734-bbeznd3r 212 53 ) ) -RRB- cord-001734-bbeznd3r 212 54 . . . cord-001734-bbeznd3r 213 1 The the DT cord-001734-bbeznd3r 213 2 deconvolution deconvolution NN cord-001734-bbeznd3r 213 3 reveals reveal VBZ cord-001734-bbeznd3r 213 4 that that IN cord-001734-bbeznd3r 213 5 the the DT cord-001734-bbeznd3r 213 6 NS2B NS2B NNP cord-001734-bbeznd3r 213 7 ( ( -LRB- cord-001734-bbeznd3r 213 8 1 1 CD cord-001734-bbeznd3r 213 9 - - SYM cord-001734-bbeznd3r 213 10 130 130 CD cord-001734-bbeznd3r 213 11 ) ) -RRB- cord-001734-bbeznd3r 213 12 reconstituted reconstitute VBN cord-001734-bbeznd3r 213 13 in in IN cord-001734-bbeznd3r 213 14 the the DT cord-001734-bbeznd3r 213 15 LMPC LMPC NNP cord-001734-bbeznd3r 213 16 micelle micelle NN cord-001734-bbeznd3r 213 17 contains contain VBZ cord-001734-bbeznd3r 213 18 28 28 CD cord-001734-bbeznd3r 213 19 % % NN cord-001734-bbeznd3r 213 20 random random JJ cord-001734-bbeznd3r 213 21 coil coil NN cord-001734-bbeznd3r 213 22 , , , cord-001734-bbeznd3r 213 23 23 23 CD cord-001734-bbeznd3r 213 24 % % NN cord-001734-bbeznd3r 213 25 turn turn NN cord-001734-bbeznd3r 213 26 , , , cord-001734-bbeznd3r 213 27 17 17 CD cord-001734-bbeznd3r 213 28 % % NN cord-001734-bbeznd3r 213 29 extended extended JJ cord-001734-bbeznd3r 213 30 strand strand NN cord-001734-bbeznd3r 213 31 and and CC cord-001734-bbeznd3r 213 32 32 32 CD cord-001734-bbeznd3r 213 33 % % NN cord-001734-bbeznd3r 213 34 helix helix NN cord-001734-bbeznd3r 213 35 secondary secondary JJ cord-001734-bbeznd3r 213 36 structures structure NNS cord-001734-bbeznd3r 213 37 . . . cord-001734-bbeznd3r 214 1 The the DT cord-001734-bbeznd3r 214 2 large large JJ cord-001734-bbeznd3r 214 3 portion portion NN cord-001734-bbeznd3r 214 4 of of IN cord-001734-bbeznd3r 214 5 the the DT cord-001734-bbeznd3r 214 6 helix helix NN cord-001734-bbeznd3r 214 7 conformation conformation NN cord-001734-bbeznd3r 214 8 is be VBZ cord-001734-bbeznd3r 214 9 anticipated anticipate VBN cord-001734-bbeznd3r 214 10 to to TO cord-001734-bbeznd3r 214 11 result result VB cord-001734-bbeznd3r 214 12 from from IN cord-001734-bbeznd3r 214 13 the the DT cord-001734-bbeznd3r 214 14 formation formation NN cord-001734-bbeznd3r 214 15 of of IN cord-001734-bbeznd3r 214 16 the the DT cord-001734-bbeznd3r 214 17 transmembrane transmembrane NNP cord-001734-bbeznd3r 214 18 helices helix NNS cord-001734-bbeznd3r 214 19 at at IN cord-001734-bbeznd3r 214 20 both both DT cord-001734-bbeznd3r 214 21 of of IN cord-001734-bbeznd3r 214 22 N N NNP cord-001734-bbeznd3r 214 23 - - : cord-001734-bbeznd3r 214 24 and and CC cord-001734-bbeznd3r 214 25 C C NNP cord-001734-bbeznd3r 214 26 - - HYPH cord-001734-bbeznd3r 214 27 terminal terminal NN cord-001734-bbeznd3r 214 28 termini terminus NNS cord-001734-bbeznd3r 214 29 . . . cord-001734-bbeznd3r 215 1 Interestingly interestingly RB cord-001734-bbeznd3r 215 2 , , , cord-001734-bbeznd3r 215 3 the the DT cord-001734-bbeznd3r 215 4 NS2B NS2B NNP cord-001734-bbeznd3r 215 5 ( ( -LRB- cord-001734-bbeznd3r 215 6 1 1 CD cord-001734-bbeznd3r 215 7 - - SYM cord-001734-bbeznd3r 215 8 130 130 CD cord-001734-bbeznd3r 215 9 ) ) -RRB- cord-001734-bbeznd3r 215 10 in in IN cord-001734-bbeznd3r 215 11 the the DT cord-001734-bbeznd3r 215 12 LMPC LMPC NNP cord-001734-bbeznd3r 215 13 micelle micelle NN cord-001734-bbeznd3r 215 14 has~10 has~10 CD cord-001734-bbeznd3r 215 15 % % NN cord-001734-bbeznd3r 215 16 higher high JJR cord-001734-bbeznd3r 215 17 β β NN cord-001734-bbeznd3r 215 18 - - HYPH cord-001734-bbeznd3r 215 19 strand strand NN cord-001734-bbeznd3r 215 20 conformation conformation NN cord-001734-bbeznd3r 215 21 than than IN cord-001734-bbeznd3r 215 22 the the DT cord-001734-bbeznd3r 215 23 NS2B NS2B NNP cord-001734-bbeznd3r 215 24 ( ( -LRB- cord-001734-bbeznd3r 215 25 48 48 CD cord-001734-bbeznd3r 215 26 - - SYM cord-001734-bbeznd3r 215 27 100 100 CD cord-001734-bbeznd3r 215 28 ) ) -RRB- cord-001734-bbeznd3r 215 29 in in IN cord-001734-bbeznd3r 215 30 buffer buffer NN cord-001734-bbeznd3r 215 31 , , , cord-001734-bbeznd3r 215 32 implying imply VBG cord-001734-bbeznd3r 215 33 that that IN cord-001734-bbeznd3r 215 34 they -PRON- PRP cord-001734-bbeznd3r 215 35 only only RB cord-001734-bbeznd3r 215 36 have have VBP cord-001734-bbeznd3r 215 37 a a DT cord-001734-bbeznd3r 215 38 slight slight JJ cord-001734-bbeznd3r 215 39 difference difference NN cord-001734-bbeznd3r 215 40 in in IN cord-001734-bbeznd3r 215 41 secondary secondary JJ cord-001734-bbeznd3r 215 42 structures structure NNS cord-001734-bbeznd3r 215 43 if if IN cord-001734-bbeznd3r 215 44 considering consider VBG cord-001734-bbeznd3r 215 45 the the DT cord-001734-bbeznd3r 215 46 error error NN cord-001734-bbeznd3r 215 47 in in IN cord-001734-bbeznd3r 215 48 CD cd NN cord-001734-bbeznd3r 215 49 deconvolution deconvolution NN cord-001734-bbeznd3r 215 50 . . . cord-001734-bbeznd3r 216 1 On on IN cord-001734-bbeznd3r 216 2 the the DT cord-001734-bbeznd3r 216 3 other other JJ cord-001734-bbeznd3r 216 4 hand hand NN cord-001734-bbeznd3r 216 5 , , , cord-001734-bbeznd3r 216 6 only only RB cord-001734-bbeznd3r 216 7 a a DT cord-001734-bbeznd3r 216 8 small small JJ cord-001734-bbeznd3r 216 9 set set NN cord-001734-bbeznd3r 216 10 of of IN cord-001734-bbeznd3r 216 11 broad broad JJ cord-001734-bbeznd3r 216 12 peaks peak NNS cord-001734-bbeznd3r 216 13 could could MD cord-001734-bbeznd3r 216 14 be be VB cord-001734-bbeznd3r 216 15 detected detect VBN cord-001734-bbeznd3r 216 16 in in IN cord-001734-bbeznd3r 216 17 its -PRON- PRP$ cord-001734-bbeznd3r 216 18 HSQC HSQC NNP cord-001734-bbeznd3r 216 19 spectrum spectrum NN cord-001734-bbeznd3r 216 20 ( ( -LRB- cord-001734-bbeznd3r 216 21 Fig Fig NNP cord-001734-bbeznd3r 216 22 4B 4b CD cord-001734-bbeznd3r 216 23 ) ) -RRB- cord-001734-bbeznd3r 216 24 , , , cord-001734-bbeznd3r 216 25 indicating indicate VBG cord-001734-bbeznd3r 216 26 that that IN cord-001734-bbeznd3r 216 27 the the DT cord-001734-bbeznd3r 216 28 NS3B NS3B NNP cord-001734-bbeznd3r 216 29 ( ( -LRB- cord-001734-bbeznd3r 216 30 1 1 CD cord-001734-bbeznd3r 216 31 - - SYM cord-001734-bbeznd3r 216 32 130 130 CD cord-001734-bbeznd3r 216 33 ) ) -RRB- cord-001734-bbeznd3r 216 34 in in IN cord-001734-bbeznd3r 216 35 the the DT cord-001734-bbeznd3r 216 36 LMPC LMPC NNP cord-001734-bbeznd3r 216 37 micelle micelle NN cord-001734-bbeznd3r 216 38 undergoes undergo VBZ cord-001734-bbeznd3r 216 39 significant significant JJ cord-001734-bbeznd3r 216 40 conformational conformational JJ cord-001734-bbeznd3r 216 41 exchanges exchange NNS cord-001734-bbeznd3r 216 42 on on IN cord-001734-bbeznd3r 216 43 μs μs NNP cord-001734-bbeznd3r 216 44 - - HYPH cord-001734-bbeznd3r 216 45 ms ms NNP cord-001734-bbeznd3r 216 46 time time NN cord-001734-bbeznd3r 216 47 scale scale NN cord-001734-bbeznd3r 216 48 , , , cord-001734-bbeznd3r 216 49 or or CC cord-001734-bbeznd3r 216 50 / / SYM cord-001734-bbeznd3r 216 51 and and CC cord-001734-bbeznd3r 216 52 dynamic dynamic JJ cord-001734-bbeznd3r 216 53 aggregation aggregation NN cord-001734-bbeznd3r 216 54 , , , cord-001734-bbeznd3r 216 55 which which WDT cord-001734-bbeznd3r 216 56 thus thus RB cord-001734-bbeznd3r 216 57 prevents prevent VBZ cord-001734-bbeznd3r 216 58 from from IN cord-001734-bbeznd3r 216 59 further further JJ cord-001734-bbeznd3r 216 60 high high JJ cord-001734-bbeznd3r 216 61 - - HYPH cord-001734-bbeznd3r 216 62 resolution resolution NN cord-001734-bbeznd3r 216 63 NMR NMR NNP cord-001734-bbeznd3r 216 64 studies study NNS cord-001734-bbeznd3r 216 65 . . . cord-001734-bbeznd3r 217 1 The the DT cord-001734-bbeznd3r 217 2 observed observed JJ cord-001734-bbeznd3r 217 3 line line NN cord-001734-bbeznd3r 217 4 - - HYPH cord-001734-bbeznd3r 217 5 broadening broadening NN cord-001734-bbeznd3r 217 6 can can MD cord-001734-bbeznd3r 217 7 not not RB cord-001734-bbeznd3r 217 8 mainly mainly RB cord-001734-bbeznd3r 217 9 result result VB cord-001734-bbeznd3r 217 10 from from IN cord-001734-bbeznd3r 217 11 the the DT cord-001734-bbeznd3r 217 12 increased increase VBN cord-001734-bbeznd3r 217 13 molecular molecular JJ cord-001734-bbeznd3r 217 14 weight weight NN cord-001734-bbeznd3r 217 15 in in IN cord-001734-bbeznd3r 217 16 the the DT cord-001734-bbeznd3r 217 17 LMPC LMPC NNP cord-001734-bbeznd3r 217 18 micelle micelle NN cord-001734-bbeznd3r 217 19 as as RB cord-001734-bbeznd3r 217 20 much much RB cord-001734-bbeznd3r 217 21 more more RBR cord-001734-bbeznd3r 217 22 narrow narrow JJ cord-001734-bbeznd3r 217 23 peaks peak NNS cord-001734-bbeznd3r 217 24 for for IN cord-001734-bbeznd3r 217 25 almost almost RB cord-001734-bbeznd3r 217 26 all all DT cord-001734-bbeznd3r 217 27 residues residue NNS cord-001734-bbeznd3r 217 28 could could MD cord-001734-bbeznd3r 217 29 be be VB cord-001734-bbeznd3r 217 30 detected detect VBN cord-001734-bbeznd3r 217 31 for for IN cord-001734-bbeznd3r 217 32 the the DT cord-001734-bbeznd3r 217 33 helical helical JJ cord-001734-bbeznd3r 217 34 superoxide superoxide NN cord-001734-bbeznd3r 217 35 dismutase dismutase NN cord-001734-bbeznd3r 217 36 1 1 CD cord-001734-bbeznd3r 217 37 ( ( -LRB- cord-001734-bbeznd3r 217 38 SOD1 SOD1 NNP cord-001734-bbeznd3r 217 39 ) ) -RRB- cord-001734-bbeznd3r 217 40 with with IN cord-001734-bbeznd3r 217 41 153 153 CD cord-001734-bbeznd3r 217 42 residues residue NNS cord-001734-bbeznd3r 217 43 in in IN cord-001734-bbeznd3r 217 44 the the DT cord-001734-bbeznd3r 217 45 DPC DPC NNP cord-001734-bbeznd3r 217 46 micelle micelle NN cord-001734-bbeznd3r 217 47 [ [ -LRB- cord-001734-bbeznd3r 217 48 41 41 CD cord-001734-bbeznd3r 217 49 ] ] -RRB- cord-001734-bbeznd3r 217 50 . . . cord-001734-bbeznd3r 218 1 We -PRON- PRP cord-001734-bbeznd3r 218 2 also also RB cord-001734-bbeznd3r 218 3 refolded refolde VBD cord-001734-bbeznd3r 218 4 the the DT cord-001734-bbeznd3r 218 5 NS3pro ns3pro NN cord-001734-bbeznd3r 218 6 with with IN cord-001734-bbeznd3r 218 7 the the DT cord-001734-bbeznd3r 218 8 full full JJ cord-001734-bbeznd3r 218 9 - - HYPH cord-001734-bbeznd3r 218 10 length length NN cord-001734-bbeznd3r 218 11 NS2B NS2B NNP cord-001734-bbeznd3r 218 12 ( ( -LRB- cord-001734-bbeznd3r 218 13 1 1 CD cord-001734-bbeznd3r 218 14 - - SYM cord-001734-bbeznd3r 218 15 130 130 CD cord-001734-bbeznd3r 218 16 ) ) -RRB- cord-001734-bbeznd3r 218 17 in in IN cord-001734-bbeznd3r 218 18 the the DT cord-001734-bbeznd3r 218 19 LMPC LMPC NNP cord-001734-bbeznd3r 218 20 micelle micelle NN cord-001734-bbeznd3r 218 21 . . . cord-001734-bbeznd3r 219 1 As as IN cord-001734-bbeznd3r 219 2 shown show VBN cord-001734-bbeznd3r 219 3 in in IN cord-001734-bbeznd3r 219 4 Fig Fig NNP cord-001734-bbeznd3r 219 5 4A 4a CD cord-001734-bbeznd3r 219 6 , , , cord-001734-bbeznd3r 219 7 the the DT cord-001734-bbeznd3r 219 8 far far JJ cord-001734-bbeznd3r 219 9 - - HYPH cord-001734-bbeznd3r 219 10 UV uv NN cord-001734-bbeznd3r 219 11 CD cd NN cord-001734-bbeznd3r 219 12 spectrum spectrum NN cord-001734-bbeznd3r 219 13 of of IN cord-001734-bbeznd3r 219 14 the the DT cord-001734-bbeznd3r 219 15 complex complex NN cord-001734-bbeznd3r 219 16 between between IN cord-001734-bbeznd3r 219 17 NS2B NS2B NNP cord-001734-bbeznd3r 219 18 ( ( -LRB- cord-001734-bbeznd3r 219 19 1 1 CD cord-001734-bbeznd3r 219 20 - - SYM cord-001734-bbeznd3r 219 21 130 130 CD cord-001734-bbeznd3r 219 22 ) ) -RRB- cord-001734-bbeznd3r 219 23 and and CC cord-001734-bbeznd3r 219 24 NS3pro NS3pro NNP cord-001734-bbeznd3r 219 25 in in IN cord-001734-bbeznd3r 219 26 the the DT cord-001734-bbeznd3r 219 27 LMPC LMPC NNP cord-001734-bbeznd3r 219 28 micelle micelle NN cord-001734-bbeznd3r 219 29 has have VBZ cord-001734-bbeznd3r 219 30 the the DT cord-001734-bbeznd3r 219 31 maximal maximal JJ cord-001734-bbeznd3r 219 32 negative negative JJ cord-001734-bbeznd3r 219 33 signal signal NN cord-001734-bbeznd3r 219 34 at at IN cord-001734-bbeznd3r 219 35 206 206 CD cord-001734-bbeznd3r 219 36 nm nm NN cord-001734-bbeznd3r 219 37 and and CC cord-001734-bbeznd3r 219 38 positive positive JJ cord-001734-bbeznd3r 219 39 signal signal NN cord-001734-bbeznd3r 219 40 at at IN cord-001734-bbeznd3r 219 41 190 190 CD cord-001734-bbeznd3r 219 42 nm nm NN cord-001734-bbeznd3r 219 43 , , , cord-001734-bbeznd3r 219 44 as as RB cord-001734-bbeznd3r 219 45 well well RB cord-001734-bbeznd3r 219 46 as as IN cord-001734-bbeznd3r 219 47 an an DT cord-001734-bbeznd3r 219 48 additional additional JJ cord-001734-bbeznd3r 219 49 negative negative JJ cord-001734-bbeznd3r 219 50 signal signal NN cord-001734-bbeznd3r 219 51 at at IN cord-001734-bbeznd3r 219 52 222 222 CD cord-001734-bbeznd3r 219 53 nm nm NN cord-001734-bbeznd3r 219 54 ( ( -LRB- cord-001734-bbeznd3r 219 55 Fig fig NN cord-001734-bbeznd3r 219 56 4A 4a CD cord-001734-bbeznd3r 219 57 ) ) -RRB- cord-001734-bbeznd3r 219 58 . . . cord-001734-bbeznd3r 220 1 The the DT cord-001734-bbeznd3r 220 2 deconvolution deconvolution NN cord-001734-bbeznd3r 220 3 shows show VBZ cord-001734-bbeznd3r 220 4 that that IN cord-001734-bbeznd3r 220 5 its -PRON- PRP$ cord-001734-bbeznd3r 220 6 secondary secondary JJ cord-001734-bbeznd3r 220 7 structure structure NN cord-001734-bbeznd3r 220 8 contents content NNS cord-001734-bbeznd3r 220 9 are be VBP cord-001734-bbeznd3r 220 10 very very RB cord-001734-bbeznd3r 220 11 similar similar JJ cord-001734-bbeznd3r 220 12 to to IN cord-001734-bbeznd3r 220 13 those those DT cord-001734-bbeznd3r 220 14 of of IN cord-001734-bbeznd3r 220 15 the the DT cord-001734-bbeznd3r 220 16 complex complex NN cord-001734-bbeznd3r 220 17 between between IN cord-001734-bbeznd3r 220 18 NS2B NS2B NNP cord-001734-bbeznd3r 220 19 ( ( -LRB- cord-001734-bbeznd3r 220 20 48 48 CD cord-001734-bbeznd3r 220 21 - - SYM cord-001734-bbeznd3r 220 22 100 100 CD cord-001734-bbeznd3r 220 23 ) ) -RRB- cord-001734-bbeznd3r 220 24 and and CC cord-001734-bbeznd3r 220 25 NS3pro NS3pro NNP cord-001734-bbeznd3r 220 26 in in IN cord-001734-bbeznd3r 220 27 buffer buffer NN cord-001734-bbeznd3r 220 28 , , , cord-001734-bbeznd3r 220 29 only only RB cord-001734-bbeznd3r 220 30 with~3 with~3 NNP cord-001734-bbeznd3r 220 31 % % NN cord-001734-bbeznd3r 220 32 increase increase NN cord-001734-bbeznd3r 220 33 of of IN cord-001734-bbeznd3r 220 34 β β NN cord-001734-bbeznd3r 220 35 - - HYPH cord-001734-bbeznd3r 220 36 strand strand NN cord-001734-bbeznd3r 220 37 conformation conformation NN cord-001734-bbeznd3r 220 38 and~1.6 and~1.6 VBD cord-001734-bbeznd3r 220 39 % % NN cord-001734-bbeznd3r 220 40 reduction reduction NN cord-001734-bbeznd3r 220 41 of of IN cord-001734-bbeznd3r 220 42 the the DT cord-001734-bbeznd3r 220 43 helix helix NN cord-001734-bbeznd3r 220 44 conformation conformation NN cord-001734-bbeznd3r 220 45 . . . cord-001734-bbeznd3r 221 1 However however RB cord-001734-bbeznd3r 221 2 , , , cord-001734-bbeznd3r 221 3 very very RB cord-001734-bbeznd3r 221 4 different different JJ cord-001734-bbeznd3r 221 5 from from IN cord-001734-bbeznd3r 221 6 the the DT cord-001734-bbeznd3r 221 7 complex complex NN cord-001734-bbeznd3r 221 8 between between IN cord-001734-bbeznd3r 221 9 NS2B NS2B NNP cord-001734-bbeznd3r 221 10 ( ( -LRB- cord-001734-bbeznd3r 221 11 48 48 CD cord-001734-bbeznd3r 221 12 - - SYM cord-001734-bbeznd3r 221 13 100 100 CD cord-001734-bbeznd3r 221 14 ) ) -RRB- cord-001734-bbeznd3r 221 15 and and CC cord-001734-bbeznd3r 221 16 NS3pro NS3pro NNP cord-001734-bbeznd3r 221 17 in in IN cord-001734-bbeznd3r 221 18 buffer buffer NN cord-001734-bbeznd3r 221 19 ( ( -LRB- cord-001734-bbeznd3r 221 20 Fig Fig NNP cord-001734-bbeznd3r 221 21 3D 3D NNP cord-001734-bbeznd3r 221 22 ) ) -RRB- cord-001734-bbeznd3r 221 23 , , , cord-001734-bbeznd3r 221 24 for for IN cord-001734-bbeznd3r 221 25 the the DT cord-001734-bbeznd3r 221 26 HSQC HSQC NNP cord-001734-bbeznd3r 221 27 spectrum spectrum NN cord-001734-bbeznd3r 221 28 of of IN cord-001734-bbeznd3r 221 29 the the DT cord-001734-bbeznd3r 221 30 complex complex NN cord-001734-bbeznd3r 221 31 between between IN cord-001734-bbeznd3r 221 32 NS2B NS2B NNP cord-001734-bbeznd3r 221 33 ( ( -LRB- cord-001734-bbeznd3r 221 34 1 1 CD cord-001734-bbeznd3r 221 35 - - SYM cord-001734-bbeznd3r 221 36 130 130 CD cord-001734-bbeznd3r 221 37 ) ) -RRB- cord-001734-bbeznd3r 221 38 and and CC cord-001734-bbeznd3r 221 39 NS3pro NS3pro NNP cord-001734-bbeznd3r 221 40 in in IN cord-001734-bbeznd3r 221 41 the the DT cord-001734-bbeznd3r 221 42 LMPC LMPC NNP cord-001734-bbeznd3r 221 43 micelle micelle NN cord-001734-bbeznd3r 221 44 ( ( -LRB- cord-001734-bbeznd3r 221 45 Fig Fig NNP cord-001734-bbeznd3r 221 46 4C 4c CD cord-001734-bbeznd3r 221 47 ) ) -RRB- cord-001734-bbeznd3r 221 48 , , , cord-001734-bbeznd3r 221 49 only only RB cord-001734-bbeznd3r 221 50 a a DT cord-001734-bbeznd3r 221 51 small small JJ cord-001734-bbeznd3r 221 52 portion portion NN cord-001734-bbeznd3r 221 53 of of IN cord-001734-bbeznd3r 221 54 the the DT cord-001734-bbeznd3r 221 55 HSQC HSQC NNP cord-001734-bbeznd3r 221 56 resonance resonance NN cord-001734-bbeznd3r 221 57 peaks peak NNS cord-001734-bbeznd3r 221 58 could could MD cord-001734-bbeznd3r 221 59 be be VB cord-001734-bbeznd3r 221 60 observed observe VBN cord-001734-bbeznd3r 221 61 , , , cord-001734-bbeznd3r 221 62 which which WDT cord-001734-bbeznd3r 221 63 are be VBP cord-001734-bbeznd3r 221 64 also also RB cord-001734-bbeznd3r 221 65 much much RB cord-001734-bbeznd3r 221 66 more more RBR cord-001734-bbeznd3r 221 67 broad broad JJ cord-001734-bbeznd3r 221 68 . . . cord-001734-bbeznd3r 222 1 This this DT cord-001734-bbeznd3r 222 2 is be VBZ cord-001734-bbeznd3r 222 3 partly partly RB cord-001734-bbeznd3r 222 4 due due JJ cord-001734-bbeznd3r 222 5 to to IN cord-001734-bbeznd3r 222 6 the the DT cord-001734-bbeznd3r 222 7 increased increase VBN cord-001734-bbeznd3r 222 8 molecular molecular JJ cord-001734-bbeznd3r 222 9 weight weight NN cord-001734-bbeznd3r 222 10 of of IN cord-001734-bbeznd3r 222 11 the the DT cord-001734-bbeznd3r 222 12 complex complex NN cord-001734-bbeznd3r 222 13 upon upon IN cord-001734-bbeznd3r 222 14 being be VBG cord-001734-bbeznd3r 222 15 anchored anchor VBN cord-001734-bbeznd3r 222 16 into into IN cord-001734-bbeznd3r 222 17 the the DT cord-001734-bbeznd3r 222 18 LMPC LMPC NNP cord-001734-bbeznd3r 222 19 micelle micelle NN cord-001734-bbeznd3r 222 20 . . . cord-001734-bbeznd3r 223 1 A a DT cord-001734-bbeznd3r 223 2 closer close JJR cord-001734-bbeznd3r 223 3 examination examination NN cord-001734-bbeznd3r 223 4 of of IN cord-001734-bbeznd3r 223 5 the the DT cord-001734-bbeznd3r 223 6 spectra spectra NN cord-001734-bbeznd3r 223 7 revealed reveal VBD cord-001734-bbeznd3r 223 8 that that IN cord-001734-bbeznd3r 223 9 a a DT cord-001734-bbeznd3r 223 10 small small JJ cord-001734-bbeznd3r 223 11 set set NN cord-001734-bbeznd3r 223 12 of of IN cord-001734-bbeznd3r 223 13 the the DT cord-001734-bbeznd3r 223 14 NS3pro NS3pro NNP cord-001734-bbeznd3r 223 15 HSQC HSQC NNP cord-001734-bbeznd3r 223 16 peaks peak NNS cord-001734-bbeznd3r 223 17 of of IN cord-001734-bbeznd3r 223 18 the the DT cord-001734-bbeznd3r 223 19 NS2B NS2B NNP cord-001734-bbeznd3r 223 20 ( ( -LRB- cord-001734-bbeznd3r 223 21 1 1 CD cord-001734-bbeznd3r 223 22 - - HYPH cord-001734-bbeznd3r 223 23 130)-NS3pro 130)-ns3pro CD cord-001734-bbeznd3r 223 24 complex complex NN cord-001734-bbeznd3r 223 25 in in IN cord-001734-bbeznd3r 223 26 the the DT cord-001734-bbeznd3r 223 27 LMPC LMPC NNP cord-001734-bbeznd3r 223 28 micelle micelle NN cord-001734-bbeznd3r 223 29 is be VBZ cord-001734-bbeznd3r 223 30 almost almost RB cord-001734-bbeznd3r 223 31 superimposable superimposable JJ cord-001734-bbeznd3r 223 32 to to IN cord-001734-bbeznd3r 223 33 those those DT cord-001734-bbeznd3r 223 34 of of IN cord-001734-bbeznd3r 223 35 the the DT cord-001734-bbeznd3r 223 36 NS2B NS2B NNP cord-001734-bbeznd3r 223 37 ( ( -LRB- cord-001734-bbeznd3r 223 38 40 40 CD cord-001734-bbeznd3r 223 39 - - SYM cord-001734-bbeznd3r 223 40 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 223 41 complex complex NN cord-001734-bbeznd3r 223 42 . . . cord-001734-bbeznd3r 224 1 These these DT cord-001734-bbeznd3r 224 2 residues residue NNS cord-001734-bbeznd3r 224 3 were be VBD cord-001734-bbeznd3r 224 4 identified identify VBN cord-001734-bbeznd3r 224 5 to to TO cord-001734-bbeznd3r 224 6 be be VB cord-001734-bbeznd3r 224 7 the the DT cord-001734-bbeznd3r 224 8 C c NN cord-001734-bbeznd3r 224 9 - - HYPH cord-001734-bbeznd3r 224 10 terminal terminal NN cord-001734-bbeznd3r 224 11 residues residue NNS cord-001734-bbeznd3r 224 12 Glu173-Lys185 Glu173-Lys185 NNP cord-001734-bbeznd3r 224 13 of of IN cord-001734-bbeznd3r 224 14 NS3pro NS3pro NNP cord-001734-bbeznd3r 224 15 , , , cord-001734-bbeznd3r 224 16 which which WDT cord-001734-bbeznd3r 224 17 were be VBD cord-001734-bbeznd3r 224 18 not not RB cord-001734-bbeznd3r 224 19 visible visible JJ cord-001734-bbeznd3r 224 20 in in IN cord-001734-bbeznd3r 224 21 crystal crystal JJ cord-001734-bbeznd3r 224 22 structures structure NNS cord-001734-bbeznd3r 224 23 of of IN cord-001734-bbeznd3r 224 24 the the DT cord-001734-bbeznd3r 224 25 NS2B NS2B NNP cord-001734-bbeznd3r 224 26 - - HYPH cord-001734-bbeznd3r 224 27 NS3pro NS3pro NNP cord-001734-bbeznd3r 224 28 complexes complex NNS cord-001734-bbeznd3r 224 29 , , , cord-001734-bbeznd3r 224 30 thus thus RB cord-001734-bbeznd3r 224 31 suggesting suggest VBG cord-001734-bbeznd3r 224 32 that that IN cord-001734-bbeznd3r 224 33 they -PRON- PRP cord-001734-bbeznd3r 224 34 are be VBP cord-001734-bbeznd3r 224 35 similarly similarly RB cord-001734-bbeznd3r 224 36 flexible flexible JJ cord-001734-bbeznd3r 224 37 in in IN cord-001734-bbeznd3r 224 38 both both DT cord-001734-bbeznd3r 224 39 complexes complex NNS cord-001734-bbeznd3r 225 1 NS2B NS2B NNP cord-001734-bbeznd3r 225 2 ( ( -LRB- cord-001734-bbeznd3r 225 3 40 40 CD cord-001734-bbeznd3r 225 4 - - SYM cord-001734-bbeznd3r 225 5 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 225 6 in in IN cord-001734-bbeznd3r 225 7 buffer buffer NN cord-001734-bbeznd3r 225 8 and and CC cord-001734-bbeznd3r 226 1 NS2B NS2B NNP cord-001734-bbeznd3r 226 2 ( ( -LRB- cord-001734-bbeznd3r 226 3 1 1 CD cord-001734-bbeznd3r 226 4 - - SYM cord-001734-bbeznd3r 226 5 130)-NS3pro 130)-ns3pro CD cord-001734-bbeznd3r 226 6 in in IN cord-001734-bbeznd3r 226 7 the the DT cord-001734-bbeznd3r 226 8 LMPC LMPC NNP cord-001734-bbeznd3r 226 9 micelle micelle NN cord-001734-bbeznd3r 226 10 ) ) -RRB- cord-001734-bbeznd3r 226 11 . . . cord-001734-bbeznd3r 227 1 On on IN cord-001734-bbeznd3r 227 2 the the DT cord-001734-bbeznd3r 227 3 other other JJ cord-001734-bbeznd3r 227 4 hand hand NN cord-001734-bbeznd3r 227 5 , , , cord-001734-bbeznd3r 227 6 some some DT cord-001734-bbeznd3r 227 7 HSQC HSQC NNP cord-001734-bbeznd3r 227 8 peaks peak NNS cord-001734-bbeznd3r 227 9 of of IN cord-001734-bbeznd3r 227 10 the the DT cord-001734-bbeznd3r 227 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 227 12 domain domain NN cord-001734-bbeznd3r 227 13 complexed complexe VBN cord-001734-bbeznd3r 227 14 with with IN cord-001734-bbeznd3r 227 15 the the DT cord-001734-bbeznd3r 227 16 NS2B NS2B NNP cord-001734-bbeznd3r 227 17 ( ( -LRB- cord-001734-bbeznd3r 227 18 1 1 CD cord-001734-bbeznd3r 227 19 - - SYM cord-001734-bbeznd3r 227 20 130 130 CD cord-001734-bbeznd3r 227 21 ) ) -RRB- cord-001734-bbeznd3r 227 22 in in IN cord-001734-bbeznd3r 227 23 the the DT cord-001734-bbeznd3r 227 24 LMPC LMPC NNP cord-001734-bbeznd3r 227 25 micelle micelle NN cord-001734-bbeznd3r 227 26 are be VBP cord-001734-bbeznd3r 227 27 not not RB cord-001734-bbeznd3r 227 28 superimposable superimposable JJ cord-001734-bbeznd3r 227 29 to to IN cord-001734-bbeznd3r 227 30 those those DT cord-001734-bbeznd3r 227 31 in in IN cord-001734-bbeznd3r 227 32 the the DT cord-001734-bbeznd3r 227 33 NS2B NS2B NNP cord-001734-bbeznd3r 227 34 ( ( -LRB- cord-001734-bbeznd3r 227 35 40 40 CD cord-001734-bbeznd3r 227 36 - - SYM cord-001734-bbeznd3r 227 37 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 227 38 complex complex NN cord-001734-bbeznd3r 227 39 . . . cord-001734-bbeznd3r 228 1 This this DT cord-001734-bbeznd3r 228 2 implies imply VBZ cord-001734-bbeznd3r 228 3 that that IN cord-001734-bbeznd3r 228 4 these these DT cord-001734-bbeznd3r 228 5 NS3pro NS3pro NNP cord-001734-bbeznd3r 228 6 residues residue NNS cord-001734-bbeznd3r 228 7 may may MD cord-001734-bbeznd3r 228 8 have have VB cord-001734-bbeznd3r 228 9 different different JJ cord-001734-bbeznd3r 228 10 structures structure NNS cord-001734-bbeznd3r 228 11 , , , cord-001734-bbeznd3r 228 12 or or CC cord-001734-bbeznd3r 228 13 / / SYM cord-001734-bbeznd3r 228 14 and and CC cord-001734-bbeznd3r 228 15 dynamics dynamic NNS cord-001734-bbeznd3r 228 16 , , , cord-001734-bbeznd3r 228 17 or or CC cord-001734-bbeznd3r 228 18 / / SYM cord-001734-bbeznd3r 228 19 and and CC cord-001734-bbeznd3r 228 20 chemical chemical NN cord-001734-bbeznd3r 228 21 environments environment NNS cord-001734-bbeznd3r 228 22 in in IN cord-001734-bbeznd3r 228 23 the the DT cord-001734-bbeznd3r 228 24 NS2B NS2B NNP cord-001734-bbeznd3r 228 25 ( ( -LRB- cord-001734-bbeznd3r 228 26 40 40 CD cord-001734-bbeznd3r 228 27 - - SYM cord-001734-bbeznd3r 228 28 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 228 29 and and CC cord-001734-bbeznd3r 228 30 NS2B NS2B NNP cord-001734-bbeznd3r 229 1 ( ( -LRB- cord-001734-bbeznd3r 229 2 1 1 CD cord-001734-bbeznd3r 229 3 - - SYM cord-001734-bbeznd3r 229 4 130)-NS3pro 130)-ns3pro CD cord-001734-bbeznd3r 229 5 in in IN cord-001734-bbeznd3r 229 6 the the DT cord-001734-bbeznd3r 229 7 LMPC LMPC NNP cord-001734-bbeznd3r 229 8 micelle micelle NN cord-001734-bbeznd3r 229 9 . . . cord-001734-bbeznd3r 230 1 Furthermore furthermore RB cord-001734-bbeznd3r 230 2 the the DT cord-001734-bbeznd3r 230 3 fact fact NN cord-001734-bbeznd3r 230 4 that that IN cord-001734-bbeznd3r 230 5 most most RBS cord-001734-bbeznd3r 230 6 well well RB cord-001734-bbeznd3r 230 7 - - HYPH cord-001734-bbeznd3r 230 8 dispersed disperse VBN cord-001734-bbeznd3r 230 9 HSQC HSQC NNP cord-001734-bbeznd3r 230 10 peaks peak NNS cord-001734-bbeznd3r 230 11 disappeared disappear VBD cord-001734-bbeznd3r 230 12 ( ( -LRB- cord-001734-bbeznd3r 230 13 Fig Fig NNP cord-001734-bbeznd3r 230 14 4C 4c CD cord-001734-bbeznd3r 230 15 ) ) -RRB- cord-001734-bbeznd3r 230 16 implies imply VBZ cord-001734-bbeznd3r 230 17 that that IN cord-001734-bbeznd3r 230 18 the the DT cord-001734-bbeznd3r 230 19 NS3pro NS3pro NNP cord-001734-bbeznd3r 230 20 may may MD cord-001734-bbeznd3r 230 21 undergoes undergo VBZ cord-001734-bbeznd3r 230 22 significant significant JJ cord-001734-bbeznd3r 230 23 conformational conformational JJ cord-001734-bbeznd3r 230 24 exchanges exchange NNS cord-001734-bbeznd3r 230 25 on on IN cord-001734-bbeznd3r 230 26 μs μs NNP cord-001734-bbeznd3r 230 27 - - HYPH cord-001734-bbeznd3r 230 28 ms ms NNP cord-001734-bbeznd3r 230 29 time time NN cord-001734-bbeznd3r 230 30 scale scale NN cord-001734-bbeznd3r 230 31 upon upon IN cord-001734-bbeznd3r 230 32 being be VBG cord-001734-bbeznd3r 230 33 anchored anchor VBN cord-001734-bbeznd3r 230 34 in in IN cord-001734-bbeznd3r 230 35 the the DT cord-001734-bbeznd3r 230 36 LMPC LMPC NNP cord-001734-bbeznd3r 230 37 micelle micelle NN cord-001734-bbeznd3r 230 38 . . . cord-001734-bbeznd3r 231 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 231 2 , , , cord-001734-bbeznd3r 231 3 the the DT cord-001734-bbeznd3r 231 4 NS2B NS2B NNP cord-001734-bbeznd3r 231 5 ( ( -LRB- cord-001734-bbeznd3r 231 6 1 1 CD cord-001734-bbeznd3r 231 7 - - SYM cord-001734-bbeznd3r 231 8 130)-NS3pro 130)-ns3pro CD cord-001734-bbeznd3r 231 9 in in IN cord-001734-bbeznd3r 231 10 the the DT cord-001734-bbeznd3r 231 11 LMPC LMPC NNP cord-001734-bbeznd3r 231 12 micelle micelle NN cord-001734-bbeznd3r 231 13 is be VBZ cord-001734-bbeznd3r 231 14 similarly similarly RB cord-001734-bbeznd3r 231 15 active active JJ cord-001734-bbeznd3r 231 16 , , , cord-001734-bbeznd3r 231 17 with with IN cord-001734-bbeznd3r 231 18 Km km NN cord-001734-bbeznd3r 231 19 = = SYM cord-001734-bbeznd3r 231 20 101.1 101.1 CD cord-001734-bbeznd3r 231 21 ± ± CD cord-001734-bbeznd3r 231 22 3.163 3.163 CD cord-001734-bbeznd3r 231 23 μM μM NNP cord-001734-bbeznd3r 231 24 and and CC cord-001734-bbeznd3r 231 25 Kcat Kcat NNP cord-001734-bbeznd3r 231 26 = = SYM cord-001734-bbeznd3r 231 27 0.2469 0.2469 CD cord-001734-bbeznd3r 231 28 ± ± NNP cord-001734-bbeznd3r 231 29 0.003 0.003 NN cord-001734-bbeznd3r 231 30 s s NNP cord-001734-bbeznd3r 231 31 -1 -1 NN cord-001734-bbeznd3r 231 32 , , , cord-001734-bbeznd3r 231 33 which which WDT cord-001734-bbeznd3r 231 34 are be VBP cord-001734-bbeznd3r 231 35 very very RB cord-001734-bbeznd3r 231 36 similar similar JJ cord-001734-bbeznd3r 231 37 to to IN cord-001734-bbeznd3r 231 38 the the DT cord-001734-bbeznd3r 231 39 activity activity NN cord-001734-bbeznd3r 231 40 of of IN cord-001734-bbeznd3r 231 41 the the DT cord-001734-bbeznd3r 231 42 NS3pro NS3pro NNP cord-001734-bbeznd3r 231 43 in in IN cord-001734-bbeznd3r 231 44 complex complex NN cord-001734-bbeznd3r 231 45 with with IN cord-001734-bbeznd3r 231 46 the the DT cord-001734-bbeznd3r 231 47 NS2B NS2B NNP cord-001734-bbeznd3r 231 48 ( ( -LRB- cord-001734-bbeznd3r 231 49 48 48 CD cord-001734-bbeznd3r 231 50 - - SYM cord-001734-bbeznd3r 231 51 100 100 CD cord-001734-bbeznd3r 231 52 ) ) -RRB- cord-001734-bbeznd3r 231 53 with with IN cord-001734-bbeznd3r 231 54 transmembrane transmembrane NNP cord-001734-bbeznd3r 231 55 regions region NNS cord-001734-bbeznd3r 231 56 deleted delete VBN cord-001734-bbeznd3r 231 57 . . . cord-001734-bbeznd3r 232 1 Molecular molecular JJ cord-001734-bbeznd3r 232 2 dynamics dynamic NNS cord-001734-bbeznd3r 232 3 simulation simulation NN cord-001734-bbeznd3r 232 4 is be VBZ cord-001734-bbeznd3r 232 5 a a DT cord-001734-bbeznd3r 232 6 powerful powerful JJ cord-001734-bbeznd3r 232 7 tool tool NN cord-001734-bbeznd3r 232 8 to to TO cord-001734-bbeznd3r 232 9 gain gain VB cord-001734-bbeznd3r 232 10 insights insight NNS cord-001734-bbeznd3r 232 11 into into IN cord-001734-bbeznd3r 232 12 protein protein NN cord-001734-bbeznd3r 232 13 dynamics dynamic NNS cord-001734-bbeznd3r 232 14 and and CC cord-001734-bbeznd3r 232 15 folding folding NN cord-001734-bbeznd3r 232 16 / / SYM cord-001734-bbeznd3r 232 17 unfolding unfolding NN cord-001734-bbeznd3r 232 18 that that WDT cord-001734-bbeznd3r 232 19 underlies underlie VBZ cord-001734-bbeznd3r 232 20 protein protein NN cord-001734-bbeznd3r 232 21 functions function NNS cord-001734-bbeznd3r 232 22 . . . cord-001734-bbeznd3r 233 1 Although although IN cord-001734-bbeznd3r 233 2 it -PRON- PRP cord-001734-bbeznd3r 233 3 remains remain VBZ cord-001734-bbeznd3r 233 4 extremely extremely RB cord-001734-bbeznd3r 233 5 challenging challenging JJ cord-001734-bbeznd3r 233 6 to to TO cord-001734-bbeznd3r 233 7 simulate simulate VB cord-001734-bbeznd3r 233 8 the the DT cord-001734-bbeznd3r 233 9 folding folding NN cord-001734-bbeznd3r 233 10 / / SYM cord-001734-bbeznd3r 233 11 unfolding unfold VBG cord-001734-bbeznd3r 233 12 for for IN cord-001734-bbeznd3r 233 13 large large JJ cord-001734-bbeznd3r 233 14 proteins protein NNS cord-001734-bbeznd3r 233 15 such such JJ cord-001734-bbeznd3r 233 16 as as IN cord-001734-bbeznd3r 233 17 NS3pro NS3pro NNP cord-001734-bbeznd3r 233 18 , , , cord-001734-bbeznd3r 233 19 which which WDT cord-001734-bbeznd3r 233 20 usually usually RB cord-001734-bbeznd3r 233 21 occurs occur VBZ cord-001734-bbeznd3r 233 22 on on IN cord-001734-bbeznd3r 233 23 the the DT cord-001734-bbeznd3r 233 24 ms ms NNP cord-001734-bbeznd3r 233 25 - - HYPH cord-001734-bbeznd3r 233 26 s s NNP cord-001734-bbeznd3r 233 27 time time NN cord-001734-bbeznd3r 233 28 scale scale NN cord-001734-bbeznd3r 233 29 , , , cord-001734-bbeznd3r 233 30 short short JJ cord-001734-bbeznd3r 233 31 MD MD NNP cord-001734-bbeznd3r 233 32 simulations simulation NNS cord-001734-bbeznd3r 233 33 in in IN cord-001734-bbeznd3r 233 34 conjunction conjunction NN cord-001734-bbeznd3r 233 35 with with IN cord-001734-bbeznd3r 233 36 the the DT cord-001734-bbeznd3r 233 37 correlation correlation NN cord-001734-bbeznd3r 233 38 analysis analysis NN cord-001734-bbeznd3r 233 39 are be VBP cord-001734-bbeznd3r 233 40 able able JJ cord-001734-bbeznd3r 233 41 to to TO cord-001734-bbeznd3r 233 42 capture capture VB cord-001734-bbeznd3r 233 43 the the DT cord-001734-bbeznd3r 233 44 low low JJ cord-001734-bbeznd3r 233 45 - - HYPH cord-001734-bbeznd3r 233 46 frequency frequency NN cord-001734-bbeznd3r 233 47 correlated correlate VBN cord-001734-bbeznd3r 233 48 motions motion NNS cord-001734-bbeznd3r 233 49 , , , cord-001734-bbeznd3r 233 50 which which WDT cord-001734-bbeznd3r 233 51 have have VBP cord-001734-bbeznd3r 233 52 been be VBN cord-001734-bbeznd3r 233 53 recently recently RB cord-001734-bbeznd3r 233 54 found find VBN cord-001734-bbeznd3r 233 55 to to TO cord-001734-bbeznd3r 233 56 be be VB cord-001734-bbeznd3r 233 57 essential essential JJ cord-001734-bbeznd3r 233 58 for for IN cord-001734-bbeznd3r 233 59 the the DT cord-001734-bbeznd3r 233 60 catalysis catalysis NN cord-001734-bbeznd3r 233 61 of of IN cord-001734-bbeznd3r 233 62 the the DT cord-001734-bbeznd3r 233 63 SARS SARS NNP cord-001734-bbeznd3r 233 64 3C 3C NNP cord-001734-bbeznd3r 233 65 - - HYPH cord-001734-bbeznd3r 233 66 like like JJ cord-001734-bbeznd3r 233 67 protease protease NN cord-001734-bbeznd3r 233 68 [ [ -LRB- cord-001734-bbeznd3r 233 69 20 20 CD cord-001734-bbeznd3r 233 70 , , , cord-001734-bbeznd3r 233 71 21 21 CD cord-001734-bbeznd3r 233 72 ] ] -RRB- cord-001734-bbeznd3r 233 73 . . . cord-001734-bbeznd3r 234 1 Therefore therefore RB cord-001734-bbeznd3r 234 2 , , , cord-001734-bbeznd3r 234 3 to to TO cord-001734-bbeznd3r 234 4 understand understand VB cord-001734-bbeznd3r 234 5 the the DT cord-001734-bbeznd3r 234 6 role role NN cord-001734-bbeznd3r 234 7 of of IN cord-001734-bbeznd3r 234 8 the the DT cord-001734-bbeznd3r 234 9 cofactor cofactor NN cord-001734-bbeznd3r 234 10 in in IN cord-001734-bbeznd3r 234 11 the the DT cord-001734-bbeznd3r 234 12 dynamics dynamic NNS cord-001734-bbeznd3r 234 13 of of IN cord-001734-bbeznd3r 234 14 the the DT cord-001734-bbeznd3r 234 15 dengue dengue NN cord-001734-bbeznd3r 234 16 NS3 ns3 RB cord-001734-bbeznd3r 234 17 protease protease NN cord-001734-bbeznd3r 234 18 , , , cord-001734-bbeznd3r 234 19 we -PRON- PRP cord-001734-bbeznd3r 234 20 conducted conduct VBD cord-001734-bbeznd3r 234 21 20-ns 20-ns CD cord-001734-bbeznd3r 234 22 MD MD NNP cord-001734-bbeznd3r 234 23 simulations simulation NNS cord-001734-bbeznd3r 234 24 for for IN cord-001734-bbeznd3r 234 25 both both DT cord-001734-bbeznd3r 234 26 NS2B NS2B NNP cord-001734-bbeznd3r 234 27 - - HYPH cord-001734-bbeznd3r 234 28 NS3pro ns3pro NN cord-001734-bbeznd3r 234 29 complex complex JJ cord-001734-bbeznd3r 234 30 and and CC cord-001734-bbeznd3r 234 31 isolated isolated JJ cord-001734-bbeznd3r 234 32 NS3pro NS3pro NNP cord-001734-bbeznd3r 234 33 respectively respectively RB cord-001734-bbeznd3r 234 34 . . . cord-001734-bbeznd3r 235 1 Here here RB cord-001734-bbeznd3r 235 2 we -PRON- PRP cord-001734-bbeznd3r 235 3 used use VBD cord-001734-bbeznd3r 235 4 the the DT cord-001734-bbeznd3r 235 5 crystal crystal NN cord-001734-bbeznd3r 235 6 structure structure NN cord-001734-bbeznd3r 235 7 of of IN cord-001734-bbeznd3r 235 8 the the DT cord-001734-bbeznd3r 235 9 NS2B NS2B NNP cord-001734-bbeznd3r 235 10 - - HYPH cord-001734-bbeznd3r 235 11 NS3pro ns3pro NN cord-001734-bbeznd3r 235 12 complex complex NN cord-001734-bbeznd3r 235 13 ( ( -LRB- cord-001734-bbeznd3r 235 14 PDB PDB NNP cord-001734-bbeznd3r 235 15 code code NN cord-001734-bbeznd3r 235 16 : : : cord-001734-bbeznd3r 235 17 2FOM 2fom LS cord-001734-bbeznd3r 235 18 ) ) -RRB- cord-001734-bbeznd3r 235 19 with with IN cord-001734-bbeznd3r 235 20 an an DT cord-001734-bbeznd3r 235 21 open open JJ cord-001734-bbeznd3r 235 22 conformation conformation NN cord-001734-bbeznd3r 235 23 [ [ -LRB- cord-001734-bbeznd3r 235 24 7 7 CD cord-001734-bbeznd3r 235 25 ] ] -RRB- cord-001734-bbeznd3r 235 26 for for IN cord-001734-bbeznd3r 235 27 MD MD NNP cord-001734-bbeznd3r 235 28 simulations simulation NNS cord-001734-bbeznd3r 235 29 , , , cord-001734-bbeznd3r 235 30 because because IN cord-001734-bbeznd3r 235 31 this this DT cord-001734-bbeznd3r 235 32 complex complex NN cord-001734-bbeznd3r 235 33 has have VBZ cord-001734-bbeznd3r 235 34 sequences sequence NNS cord-001734-bbeznd3r 235 35 almost almost RB cord-001734-bbeznd3r 235 36 identical identical JJ cord-001734-bbeznd3r 235 37 to to IN cord-001734-bbeznd3r 235 38 what what WP cord-001734-bbeznd3r 235 39 we -PRON- PRP cord-001734-bbeznd3r 235 40 studied study VBD cord-001734-bbeznd3r 235 41 here here RB cord-001734-bbeznd3r 235 42 , , , cord-001734-bbeznd3r 235 43 with with IN cord-001734-bbeznd3r 235 44 only only RB cord-001734-bbeznd3r 235 45 one one CD cord-001734-bbeznd3r 235 46 and and CC cord-001734-bbeznd3r 235 47 two two CD cord-001734-bbeznd3r 235 48 conserved conserved JJ cord-001734-bbeznd3r 235 49 residue residue NN cord-001734-bbeznd3r 235 50 variations variation NNS cord-001734-bbeznd3r 235 51 respectively respectively RB cord-001734-bbeznd3r 235 52 as as IN cord-001734-bbeznd3r 235 53 compared compare VBN cord-001734-bbeznd3r 235 54 to to IN cord-001734-bbeznd3r 235 55 our -PRON- PRP$ cord-001734-bbeznd3r 235 56 NS3pro NS3pro NNP cord-001734-bbeznd3r 235 57 and and CC cord-001734-bbeznd3r 235 58 NS2B NS2B NNP cord-001734-bbeznd3r 235 59 constructs construct NNS cord-001734-bbeznd3r 235 60 . . . cord-001734-bbeznd3r 236 1 Furthermore furthermore RB cord-001734-bbeznd3r 236 2 , , , cord-001734-bbeznd3r 236 3 in in IN cord-001734-bbeznd3r 236 4 this this DT cord-001734-bbeznd3r 236 5 structure structure NN cord-001734-bbeznd3r 236 6 , , , cord-001734-bbeznd3r 236 7 the the DT cord-001734-bbeznd3r 236 8 NS2B NS2B NNP cord-001734-bbeznd3r 236 9 cofactor cofactor NN cord-001734-bbeznd3r 236 10 assumes assume VBZ cord-001734-bbeznd3r 236 11 an an DT cord-001734-bbeznd3r 236 12 open open JJ cord-001734-bbeznd3r 236 13 conformation conformation NN cord-001734-bbeznd3r 236 14 , , , cord-001734-bbeznd3r 236 15 thus thus RB cord-001734-bbeznd3r 236 16 has have VBZ cord-001734-bbeznd3r 236 17 a a DT cord-001734-bbeznd3r 236 18 minimal minimal JJ cord-001734-bbeznd3r 236 19 contact contact NN cord-001734-bbeznd3r 236 20 surface surface NN cord-001734-bbeznd3r 236 21 with with IN cord-001734-bbeznd3r 236 22 the the DT cord-001734-bbeznd3r 236 23 NS3pro NS3pro NNP cord-001734-bbeznd3r 236 24 domain domain NN cord-001734-bbeznd3r 236 25 as as IN cord-001734-bbeznd3r 236 26 compared compare VBN cord-001734-bbeznd3r 236 27 to to IN cord-001734-bbeznd3r 236 28 other other JJ cord-001734-bbeznd3r 236 29 structures structure NNS cord-001734-bbeznd3r 236 30 with with IN cord-001734-bbeznd3r 236 31 the the DT cord-001734-bbeznd3r 236 32 closed closed JJ cord-001734-bbeznd3r 236 33 conformation conformation NN cord-001734-bbeznd3r 236 34 . . . cord-001734-bbeznd3r 237 1 This this DT cord-001734-bbeznd3r 237 2 would would MD cord-001734-bbeznd3r 237 3 facilitate facilitate VB cord-001734-bbeznd3r 237 4 the the DT cord-001734-bbeznd3r 237 5 identification identification NN cord-001734-bbeznd3r 237 6 of of IN cord-001734-bbeznd3r 237 7 the the DT cord-001734-bbeznd3r 237 8 most most RBS cord-001734-bbeznd3r 237 9 important important JJ cord-001734-bbeznd3r 237 10 residues residue NNS cord-001734-bbeznd3r 237 11 of of IN cord-001734-bbeznd3r 237 12 the the DT cord-001734-bbeznd3r 237 13 NS2B NS2B NNP cord-001734-bbeznd3r 237 14 in in IN cord-001734-bbeznd3r 237 15 mediating mediate VBG cord-001734-bbeznd3r 237 16 the the DT cord-001734-bbeznd3r 237 17 dynamics dynamic NNS cord-001734-bbeznd3r 237 18 of of IN cord-001734-bbeznd3r 237 19 the the DT cord-001734-bbeznd3r 237 20 protease protease NN cord-001734-bbeznd3r 237 21 complex complex NN cord-001734-bbeznd3r 237 22 . . . cord-001734-bbeznd3r 238 1 Fig fig NN cord-001734-bbeznd3r 238 2 5A 5a NN cord-001734-bbeznd3r 238 3 and and CC cord-001734-bbeznd3r 238 4 5B 5b NN cord-001734-bbeznd3r 238 5 present present VBP cord-001734-bbeznd3r 238 6 the the DT cord-001734-bbeznd3r 238 7 structure structure NN cord-001734-bbeznd3r 238 8 snapshots snapshot NNS cord-001734-bbeznd3r 238 9 in in IN cord-001734-bbeznd3r 238 10 the the DT cord-001734-bbeznd3r 238 11 first first JJ cord-001734-bbeznd3r 238 12 MD MD NNP cord-001734-bbeznd3r 238 13 simulations simulation NNS cord-001734-bbeznd3r 238 14 for for IN cord-001734-bbeznd3r 238 15 the the DT cord-001734-bbeznd3r 238 16 NS3pro NS3pro NNP cord-001734-bbeznd3r 238 17 alone alone JJ cord-001734-bbeznd3r 238 18 and and CC cord-001734-bbeznd3r 238 19 the the DT cord-001734-bbeznd3r 238 20 NS2B NS2B NNP cord-001734-bbeznd3r 238 21 - - HYPH cord-001734-bbeznd3r 238 22 NS3pro NS3pro NNP cord-001734-bbeznd3r 238 23 complex complex NN cord-001734-bbeznd3r 238 24 , , , cord-001734-bbeznd3r 238 25 showing show VBG cord-001734-bbeznd3r 238 26 that that IN cord-001734-bbeznd3r 238 27 within within IN cord-001734-bbeznd3r 238 28 20 20 CD cord-001734-bbeznd3r 238 29 ns n NNS cord-001734-bbeznd3r 238 30 , , , cord-001734-bbeznd3r 238 31 both both DT cord-001734-bbeznd3r 238 32 isolated isolated JJ cord-001734-bbeznd3r 238 33 NS3pro NS3pro NNP cord-001734-bbeznd3r 238 34 domain domain NN cord-001734-bbeznd3r 238 35 and and CC cord-001734-bbeznd3r 238 36 that that IN cord-001734-bbeznd3r 238 37 in in IN cord-001734-bbeznd3r 238 38 the the DT cord-001734-bbeznd3r 238 39 complex complex NN cord-001734-bbeznd3r 238 40 remains remain VBZ cord-001734-bbeznd3r 238 41 dynamically dynamically RB cord-001734-bbeznd3r 238 42 stable stable JJ cord-001734-bbeznd3r 238 43 , , , cord-001734-bbeznd3r 238 44 in in IN cord-001734-bbeznd3r 238 45 particular particular JJ cord-001734-bbeznd3r 238 46 over over IN cord-001734-bbeznd3r 238 47 the the DT cord-001734-bbeznd3r 238 48 regions region NNS cord-001734-bbeznd3r 238 49 with with IN cord-001734-bbeznd3r 238 50 regular regular JJ cord-001734-bbeznd3r 238 51 secondary secondary JJ cord-001734-bbeznd3r 238 52 structures structure NNS cord-001734-bbeznd3r 238 53 . . . cord-001734-bbeznd3r 239 1 By by IN cord-001734-bbeznd3r 239 2 contrast contrast NN cord-001734-bbeznd3r 239 3 , , , cord-001734-bbeznd3r 239 4 the the DT cord-001734-bbeznd3r 239 5 NS2B NS2B NNP cord-001734-bbeznd3r 239 6 cofactor cofactor NN cord-001734-bbeznd3r 239 7 has have VBZ cord-001734-bbeznd3r 239 8 large large JJ cord-001734-bbeznd3r 239 9 structural structural JJ cord-001734-bbeznd3r 239 10 fluctuations fluctuation NNS cord-001734-bbeznd3r 239 11 , , , cord-001734-bbeznd3r 239 12 particularly particularly RB cord-001734-bbeznd3r 239 13 over over IN cord-001734-bbeznd3r 239 14 the the DT cord-001734-bbeznd3r 239 15 residues residue NNS cord-001734-bbeznd3r 239 16 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 239 17 which which WDT cord-001734-bbeznd3r 239 18 are be VBP cord-001734-bbeznd3r 239 19 invisible invisible JJ cord-001734-bbeznd3r 239 20 in in IN cord-001734-bbeznd3r 239 21 all all DT cord-001734-bbeznd3r 239 22 previous previous JJ cord-001734-bbeznd3r 239 23 crystal crystal NN cord-001734-bbeznd3r 239 24 structures structure NNS cord-001734-bbeznd3r 239 25 with with IN cord-001734-bbeznd3r 239 26 an an DT cord-001734-bbeznd3r 239 27 open open JJ cord-001734-bbeznd3r 239 28 conformation conformation NN cord-001734-bbeznd3r 239 29 . . . cord-001734-bbeznd3r 240 1 Fig Fig NNP cord-001734-bbeznd3r 240 2 5C-5E 5c-5e CD cord-001734-bbeznd3r 240 3 show show VBP cord-001734-bbeznd3r 240 4 the the DT cord-001734-bbeznd3r 240 5 root root NN cord-001734-bbeznd3r 240 6 - - HYPH cord-001734-bbeznd3r 240 7 mean mean JJ cord-001734-bbeznd3r 240 8 - - HYPH cord-001734-bbeznd3r 240 9 square square JJ cord-001734-bbeznd3r 240 10 deviations deviation NNS cord-001734-bbeznd3r 240 11 ( ( -LRB- cord-001734-bbeznd3r 240 12 RMSD RMSD NNP cord-001734-bbeznd3r 240 13 ) ) -RRB- cord-001734-bbeznd3r 240 14 of of IN cord-001734-bbeznd3r 240 15 Cα Cα NNP cord-001734-bbeznd3r 240 16 atoms atom NNS cord-001734-bbeznd3r 240 17 ( ( -LRB- cord-001734-bbeznd3r 240 18 from from IN cord-001734-bbeznd3r 240 19 their -PRON- PRP$ cord-001734-bbeznd3r 240 20 positions position NNS cord-001734-bbeznd3r 240 21 in in IN cord-001734-bbeznd3r 240 22 the the DT cord-001734-bbeznd3r 240 23 energy energy NN cord-001734-bbeznd3r 240 24 minimized minimize VBD cord-001734-bbeznd3r 240 25 structures structure NNS cord-001734-bbeznd3r 240 26 ) ) -RRB- cord-001734-bbeznd3r 240 27 for for IN cord-001734-bbeznd3r 240 28 three three CD cord-001734-bbeznd3r 240 29 independent independent JJ cord-001734-bbeznd3r 240 30 simulations simulation NNS cord-001734-bbeznd3r 240 31 of of IN cord-001734-bbeznd3r 240 32 the the DT cord-001734-bbeznd3r 240 33 isolated isolated JJ cord-001734-bbeznd3r 240 34 NS3pro NS3pro NNP cord-001734-bbeznd3r 240 35 , , , cord-001734-bbeznd3r 240 36 the the DT cord-001734-bbeznd3r 240 37 NS2B NS2B NNP cord-001734-bbeznd3r 240 38 and and CC cord-001734-bbeznd3r 240 39 NS3pro NS3pro NNP cord-001734-bbeznd3r 240 40 in in IN cord-001734-bbeznd3r 240 41 the the DT cord-001734-bbeznd3r 240 42 context context NN cord-001734-bbeznd3r 240 43 of of IN cord-001734-bbeznd3r 240 44 the the DT cord-001734-bbeznd3r 240 45 complex complex JJ cord-001734-bbeznd3r 240 46 respectively respectively RB cord-001734-bbeznd3r 240 47 , , , cord-001734-bbeznd3r 240 48 and and CC cord-001734-bbeznd3r 240 49 Fig Fig NNP cord-001734-bbeznd3r 240 50 _SP cord-001734-bbeznd3r 240 51 Fig Fig NNP cord-001734-bbeznd3r 240 52 5 5 CD cord-001734-bbeznd3r 240 53 . . . cord-001734-bbeznd3r 241 1 Overall overall JJ cord-001734-bbeznd3r 241 2 dynamic dynamic JJ cord-001734-bbeznd3r 241 3 behaviors behavior NNS cord-001734-bbeznd3r 241 4 in in IN cord-001734-bbeznd3r 241 5 the the DT cord-001734-bbeznd3r 241 6 MD MD NNP cord-001734-bbeznd3r 241 7 simulations simulation NNS cord-001734-bbeznd3r 241 8 . . . cord-001734-bbeznd3r 242 1 Structure structure NN cord-001734-bbeznd3r 242 2 snapshots snapshot NNS cord-001734-bbeznd3r 242 3 ( ( -LRB- cord-001734-bbeznd3r 242 4 one one CD cord-001734-bbeznd3r 242 5 structure structure NN cord-001734-bbeznd3r 242 6 for for IN cord-001734-bbeznd3r 242 7 2-ns 2-ns CD cord-001734-bbeznd3r 242 8 interval interval NN cord-001734-bbeznd3r 242 9 ) ) -RRB- cord-001734-bbeznd3r 242 10 of of IN cord-001734-bbeznd3r 242 11 the the DT cord-001734-bbeznd3r 242 12 first first JJ cord-001734-bbeznd3r 242 13 MD MD NNP cord-001734-bbeznd3r 242 14 simulations simulation NNS cord-001734-bbeznd3r 242 15 respectively respectively RB cord-001734-bbeznd3r 242 16 for for IN cord-001734-bbeznd3r 242 17 the the DT cord-001734-bbeznd3r 242 18 isolated isolated JJ cord-001734-bbeznd3r 242 19 NS3pro ns3pro NN cord-001734-bbeznd3r 242 20 ( ( -LRB- cord-001734-bbeznd3r 242 21 A a NN cord-001734-bbeznd3r 242 22 ) ) -RRB- cord-001734-bbeznd3r 242 23 and and CC cord-001734-bbeznd3r 242 24 NS2B NS2B NNP cord-001734-bbeznd3r 242 25 - - HYPH cord-001734-bbeznd3r 242 26 NS3pro ns3pro NN cord-001734-bbeznd3r 242 27 complex complex NN cord-001734-bbeznd3r 242 28 ( ( -LRB- cord-001734-bbeznd3r 242 29 B b NN cord-001734-bbeznd3r 242 30 ) ) -RRB- cord-001734-bbeznd3r 242 31 . . . cord-001734-bbeznd3r 243 1 Root root NN cord-001734-bbeznd3r 243 2 - - HYPH cord-001734-bbeznd3r 243 3 mean mean JJ cord-001734-bbeznd3r 243 4 - - HYPH cord-001734-bbeznd3r 243 5 square square JJ cord-001734-bbeznd3r 243 6 deviations deviation NNS cord-001734-bbeznd3r 243 7 ( ( -LRB- cord-001734-bbeznd3r 243 8 RMSD RMSD NNP cord-001734-bbeznd3r 243 9 ) ) -RRB- cord-001734-bbeznd3r 243 10 of of IN cord-001734-bbeznd3r 243 11 the the DT cord-001734-bbeznd3r 243 12 Cα Cα NNP cord-001734-bbeznd3r 243 13 atoms atom NNS cord-001734-bbeznd3r 243 14 ( ( -LRB- cord-001734-bbeznd3r 243 15 from from IN cord-001734-bbeznd3r 243 16 their -PRON- PRP$ cord-001734-bbeznd3r 243 17 positions position NNS cord-001734-bbeznd3r 243 18 in in IN cord-001734-bbeznd3r 243 19 the the DT cord-001734-bbeznd3r 243 20 energy energy NN cord-001734-bbeznd3r 243 21 minimized minimize VBD cord-001734-bbeznd3r 243 22 structures structure NNS cord-001734-bbeznd3r 243 23 ) ) -RRB- cord-001734-bbeznd3r 243 24 for for IN cord-001734-bbeznd3r 243 25 three three CD cord-001734-bbeznd3r 243 26 independent independent JJ cord-001734-bbeznd3r 243 27 MD MD NNP cord-001734-bbeznd3r 243 28 simulations simulation NNS cord-001734-bbeznd3r 243 29 of of IN cord-001734-bbeznd3r 243 30 the the DT cord-001734-bbeznd3r 243 31 isolated isolated JJ cord-001734-bbeznd3r 243 32 NS3pro ns3pro NN cord-001734-bbeznd3r 243 33 ( ( -LRB- cord-001734-bbeznd3r 243 34 C C NNP cord-001734-bbeznd3r 243 35 ) ) -RRB- cord-001734-bbeznd3r 243 36 , , , cord-001734-bbeznd3r 243 37 the the DT cord-001734-bbeznd3r 243 38 NS3pro NS3pro NNP cord-001734-bbeznd3r 243 39 ( ( -LRB- cord-001734-bbeznd3r 243 40 D D NNP cord-001734-bbeznd3r 243 41 ) ) -RRB- cord-001734-bbeznd3r 243 42 and and CC cord-001734-bbeznd3r 243 43 NS2B NS2B NNP cord-001734-bbeznd3r 243 44 ( ( -LRB- cord-001734-bbeznd3r 243 45 E E NNP cord-001734-bbeznd3r 243 46 ) ) -RRB- cord-001734-bbeznd3r 243 47 in in IN cord-001734-bbeznd3r 243 48 the the DT cord-001734-bbeznd3r 243 49 context context NN cord-001734-bbeznd3r 243 50 of of IN cord-001734-bbeznd3r 243 51 the the DT cord-001734-bbeznd3r 243 52 NS2B NS2B NNP cord-001734-bbeznd3r 243 53 - - HYPH cord-001734-bbeznd3r 243 54 NS3pro NS3pro NNP cord-001734-bbeznd3r 243 55 complex complex NN cord-001734-bbeznd3r 243 56 . . . cord-001734-bbeznd3r 244 1 ( ( -LRB- cord-001734-bbeznd3r 244 2 F F NNP cord-001734-bbeznd3r 244 3 ) ) -RRB- cord-001734-bbeznd3r 244 4 RMSD RMSD NNP cord-001734-bbeznd3r 244 5 trajectories trajectory NNS cord-001734-bbeznd3r 244 6 averaged average VBD cord-001734-bbeznd3r 244 7 over over IN cord-001734-bbeznd3r 244 8 three three CD cord-001734-bbeznd3r 244 9 independent independent JJ cord-001734-bbeznd3r 244 10 MD MD NNP cord-001734-bbeznd3r 244 11 simulations simulation NNS cord-001734-bbeznd3r 244 12 of of IN cord-001734-bbeznd3r 244 13 the the DT cord-001734-bbeznd3r 244 14 isolated isolated JJ cord-001734-bbeznd3r 244 15 NS3pro ns3pro NN cord-001734-bbeznd3r 244 16 ( ( -LRB- cord-001734-bbeznd3r 244 17 blue blue NNP cord-001734-bbeznd3r 244 18 ) ) -RRB- cord-001734-bbeznd3r 244 19 , , , cord-001734-bbeznd3r 244 20 the the DT cord-001734-bbeznd3r 244 21 NS3pro NS3pro NNP cord-001734-bbeznd3r 244 22 ( ( -LRB- cord-001734-bbeznd3r 244 23 red red JJ cord-001734-bbeznd3r 244 24 ) ) -RRB- cord-001734-bbeznd3r 244 25 and and CC cord-001734-bbeznd3r 244 26 NS2B NS2B NNP cord-001734-bbeznd3r 244 27 ( ( -LRB- cord-001734-bbeznd3r 244 28 cyan cyan NNP cord-001734-bbeznd3r 244 29 ) ) -RRB- cord-001734-bbeznd3r 244 30 in in IN cord-001734-bbeznd3r 244 31 the the DT cord-001734-bbeznd3r 244 32 context context NN cord-001734-bbeznd3r 244 33 of of IN cord-001734-bbeznd3r 244 34 the the DT cord-001734-bbeznd3r 244 35 NS2B NS2B NNP cord-001734-bbeznd3r 244 36 - - HYPH cord-001734-bbeznd3r 244 37 NS3pro NS3pro NNP cord-001734-bbeznd3r 244 38 complex complex NN cord-001734-bbeznd3r 244 39 . . . cord-001734-bbeznd3r 245 1 5F 5F NNP cord-001734-bbeznd3r 245 2 shows show VBZ cord-001734-bbeznd3r 245 3 their -PRON- PRP$ cord-001734-bbeznd3r 245 4 averaged average VBN cord-001734-bbeznd3r 245 5 RMSD RMSD NNP cord-001734-bbeznd3r 245 6 trajectories trajectory NNS cord-001734-bbeznd3r 245 7 . . . cord-001734-bbeznd3r 246 1 The the DT cord-001734-bbeznd3r 246 2 averaged average VBN cord-001734-bbeznd3r 246 3 RMSD RMSD NNP cord-001734-bbeznd3r 246 4 values value NNS cord-001734-bbeznd3r 246 5 are be VBP cord-001734-bbeznd3r 246 6 1.85 1.85 CD cord-001734-bbeznd3r 246 7 ± ± CD cord-001734-bbeznd3r 246 8 0.23 0.23 CD cord-001734-bbeznd3r 246 9 , , , cord-001734-bbeznd3r 246 10 1.56 1.56 CD cord-001734-bbeznd3r 246 11 ± ± CD cord-001734-bbeznd3r 246 12 0.22 0.22 CD cord-001734-bbeznd3r 246 13 and and CC cord-001734-bbeznd3r 246 14 4.40 4.40 CD cord-001734-bbeznd3r 246 15 ± ± CD cord-001734-bbeznd3r 246 16 0.71 0.71 CD cord-001734-bbeznd3r 246 17 Å Å NNP cord-001734-bbeznd3r 246 18 respectively respectively RB cord-001734-bbeznd3r 246 19 for for IN cord-001734-bbeznd3r 246 20 the the DT cord-001734-bbeznd3r 246 21 isolated isolated JJ cord-001734-bbeznd3r 246 22 NS3pro NS3pro NNP cord-001734-bbeznd3r 246 23 , , , cord-001734-bbeznd3r 246 24 the the DT cord-001734-bbeznd3r 246 25 NS3pro NS3pro NNP cord-001734-bbeznd3r 246 26 and and CC cord-001734-bbeznd3r 246 27 NS2B NS2B NNP cord-001734-bbeznd3r 246 28 in in IN cord-001734-bbeznd3r 246 29 the the DT cord-001734-bbeznd3r 246 30 context context NN cord-001734-bbeznd3r 246 31 of of IN cord-001734-bbeznd3r 246 32 the the DT cord-001734-bbeznd3r 246 33 complex complex NN cord-001734-bbeznd3r 246 34 . . . cord-001734-bbeznd3r 247 1 This this DT cord-001734-bbeznd3r 247 2 clearly clearly RB cord-001734-bbeznd3r 247 3 indicates indicate VBZ cord-001734-bbeznd3r 247 4 that that IN cord-001734-bbeznd3r 247 5 upon upon IN cord-001734-bbeznd3r 247 6 removing remove VBG cord-001734-bbeznd3r 247 7 NS2B NS2B NNP cord-001734-bbeznd3r 247 8 , , , cord-001734-bbeznd3r 247 9 the the DT cord-001734-bbeznd3r 247 10 isolated isolated JJ cord-001734-bbeznd3r 247 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 247 12 domain domain NN cord-001734-bbeznd3r 247 13 will will MD cord-001734-bbeznd3r 247 14 have have VB cord-001734-bbeznd3r 247 15 higher high JJR cord-001734-bbeznd3r 247 16 conformational conformational JJ cord-001734-bbeznd3r 247 17 dynamics dynamic NNS cord-001734-bbeznd3r 247 18 even even RB cord-001734-bbeznd3r 247 19 within within IN cord-001734-bbeznd3r 247 20 the the DT cord-001734-bbeznd3r 247 21 20-ns 20-ns CD cord-001734-bbeznd3r 247 22 simulations simulation NNS cord-001734-bbeznd3r 247 23 . . . cord-001734-bbeznd3r 248 1 As as IN cord-001734-bbeznd3r 248 2 such such JJ cord-001734-bbeznd3r 248 3 , , , cord-001734-bbeznd3r 248 4 it -PRON- PRP cord-001734-bbeznd3r 248 5 is be VBZ cord-001734-bbeznd3r 248 6 expected expect VBN cord-001734-bbeznd3r 248 7 that that IN cord-001734-bbeznd3r 248 8 the the DT cord-001734-bbeznd3r 248 9 isolated isolated JJ cord-001734-bbeznd3r 248 10 NS3pro NS3pro NNP cord-001734-bbeznd3r 248 11 domain domain NN cord-001734-bbeznd3r 248 12 may may MD cord-001734-bbeznd3r 248 13 become become VB cord-001734-bbeznd3r 248 14 unfolded unfolded JJ cord-001734-bbeznd3r 248 15 if if IN cord-001734-bbeznd3r 248 16 the the DT cord-001734-bbeznd3r 248 17 simulations simulation NNS cord-001734-bbeznd3r 248 18 could could MD cord-001734-bbeznd3r 248 19 reach reach VB cord-001734-bbeznd3r 248 20 ms ms NNP cord-001734-bbeznd3r 248 21 - - HYPH cord-001734-bbeznd3r 248 22 s s NNP cord-001734-bbeznd3r 248 23 time time NN cord-001734-bbeznd3r 248 24 scale scale NN cord-001734-bbeznd3r 248 25 . . . cord-001734-bbeznd3r 249 1 On on IN cord-001734-bbeznd3r 249 2 the the DT cord-001734-bbeznd3r 249 3 other other JJ cord-001734-bbeznd3r 249 4 hand hand NN cord-001734-bbeznd3r 249 5 , , , cord-001734-bbeznd3r 249 6 even even RB cord-001734-bbeznd3r 249 7 in in IN cord-001734-bbeznd3r 249 8 the the DT cord-001734-bbeznd3r 249 9 context context NN cord-001734-bbeznd3r 249 10 of of IN cord-001734-bbeznd3r 249 11 the the DT cord-001734-bbeznd3r 249 12 complex complex NN cord-001734-bbeznd3r 249 13 , , , cord-001734-bbeznd3r 249 14 the the DT cord-001734-bbeznd3r 249 15 NS2B NS2B NNP cord-001734-bbeznd3r 249 16 cofactor cofactor NN cord-001734-bbeznd3r 249 17 has have VBZ cord-001734-bbeznd3r 249 18 much much RB cord-001734-bbeznd3r 249 19 higher high JJR cord-001734-bbeznd3r 249 20 structural structural JJ cord-001734-bbeznd3r 249 21 fluctuations fluctuation NNS cord-001734-bbeznd3r 249 22 than than IN cord-001734-bbeznd3r 249 23 NS3pro NS3pro NNP cord-001734-bbeznd3r 249 24 , , , cord-001734-bbeznd3r 249 25 implying imply VBG cord-001734-bbeznd3r 249 26 that that IN cord-001734-bbeznd3r 249 27 the the DT cord-001734-bbeznd3r 249 28 bound bind VBN cord-001734-bbeznd3r 249 29 NS2B NS2B NNP cord-001734-bbeznd3r 249 30 cofactor cofactor NN cord-001734-bbeznd3r 249 31 is be VBZ cord-001734-bbeznd3r 249 32 still still RB cord-001734-bbeznd3r 249 33 capable capable JJ cord-001734-bbeznd3r 249 34 to to TO cord-001734-bbeznd3r 249 35 sample sample VB cord-001734-bbeznd3r 249 36 a a DT cord-001734-bbeznd3r 249 37 large large JJ cord-001734-bbeznd3r 249 38 ensemble ensemble NN cord-001734-bbeznd3r 249 39 of of IN cord-001734-bbeznd3r 249 40 conformations conformation NNS cord-001734-bbeznd3r 249 41 . . . cord-001734-bbeznd3r 250 1 The the DT cord-001734-bbeznd3r 250 2 high high JJ cord-001734-bbeznd3r 250 3 flexibility flexibility NN cord-001734-bbeznd3r 250 4 of of IN cord-001734-bbeznd3r 250 5 NS2B NS2B NNP cord-001734-bbeznd3r 250 6 uncovered uncover VBN cord-001734-bbeznd3r 250 7 by by IN cord-001734-bbeznd3r 250 8 MD MD NNP cord-001734-bbeznd3r 250 9 simulations simulation NNS cord-001734-bbeznd3r 250 10 here here RB cord-001734-bbeznd3r 250 11 is be VBZ cord-001734-bbeznd3r 250 12 completely completely RB cord-001734-bbeznd3r 250 13 consistent consistent JJ cord-001734-bbeznd3r 250 14 with with IN cord-001734-bbeznd3r 250 15 the the DT cord-001734-bbeznd3r 250 16 invisibility invisibility NN cord-001734-bbeznd3r 250 17 of of IN cord-001734-bbeznd3r 250 18 many many JJ cord-001734-bbeznd3r 250 19 cofactor cofactor NN cord-001734-bbeznd3r 250 20 residues residue NNS cord-001734-bbeznd3r 250 21 in in IN cord-001734-bbeznd3r 250 22 crystal crystal NN cord-001734-bbeznd3r 250 23 structures structure NNS cord-001734-bbeznd3r 250 24 and and CC cord-001734-bbeznd3r 250 25 also also RB cord-001734-bbeznd3r 250 26 provides provide VBZ cord-001734-bbeznd3r 250 27 a a DT cord-001734-bbeznd3r 250 28 dynamic dynamic JJ cord-001734-bbeznd3r 250 29 basis basis NN cord-001734-bbeznd3r 250 30 for for IN cord-001734-bbeznd3r 250 31 the the DT cord-001734-bbeznd3r 250 32 conformational conformational JJ cord-001734-bbeznd3r 250 33 exchange exchange NN cord-001734-bbeznd3r 250 34 of of IN cord-001734-bbeznd3r 250 35 NS2B NS2B NNP cord-001734-bbeznd3r 250 36 between between IN cord-001734-bbeznd3r 250 37 open open JJ cord-001734-bbeznd3r 250 38 and and CC cord-001734-bbeznd3r 250 39 closed closed JJ cord-001734-bbeznd3r 250 40 conformations conformation NNS cord-001734-bbeznd3r 250 41 as as IN cord-001734-bbeznd3r 250 42 previously previously RB cord-001734-bbeznd3r 250 43 observed observe VBD cord-001734-bbeznd3r 250 44 [ [ -LRB- cord-001734-bbeznd3r 250 45 8 8 CD cord-001734-bbeznd3r 250 46 ] ] -RRB- cord-001734-bbeznd3r 250 47 [ [ -LRB- cord-001734-bbeznd3r 250 48 9 9 CD cord-001734-bbeznd3r 250 49 ] ] -RRB- cord-001734-bbeznd3r 250 50 [ [ -LRB- cord-001734-bbeznd3r 250 51 10 10 CD cord-001734-bbeznd3r 250 52 ] ] -RRB- cord-001734-bbeznd3r 250 53 [ [ -LRB- cord-001734-bbeznd3r 250 54 11 11 CD cord-001734-bbeznd3r 250 55 ] ] -RRB- cord-001734-bbeznd3r 250 56 [ [ -LRB- cord-001734-bbeznd3r 250 57 12 12 CD cord-001734-bbeznd3r 250 58 ] ] -RRB- cord-001734-bbeznd3r 250 59 . . . cord-001734-bbeznd3r 251 1 Noticeably noticeably RB cord-001734-bbeznd3r 251 2 , , , cord-001734-bbeznd3r 251 3 similar similar JJ cord-001734-bbeznd3r 251 4 dynamic dynamic JJ cord-001734-bbeznd3r 251 5 behaviours behaviour NNS cord-001734-bbeznd3r 251 6 are be VBP cord-001734-bbeznd3r 251 7 also also RB cord-001734-bbeznd3r 251 8 reflected reflect VBN cord-001734-bbeznd3r 251 9 by by IN cord-001734-bbeznd3r 251 10 the the DT cord-001734-bbeznd3r 251 11 root root NN cord-001734-bbeznd3r 251 12 - - HYPH cord-001734-bbeznd3r 251 13 mean mean JJ cord-001734-bbeznd3r 251 14 - - HYPH cord-001734-bbeznd3r 251 15 square square JJ cord-001734-bbeznd3r 251 16 fluctuations fluctuation NNS cord-001734-bbeznd3r 251 17 ( ( -LRB- cord-001734-bbeznd3r 251 18 RMSF RMSF NNP cord-001734-bbeznd3r 251 19 ) ) -RRB- cord-001734-bbeznd3r 251 20 of of IN cord-001734-bbeznd3r 251 21 the the DT cord-001734-bbeznd3r 251 22 Cα Cα NNP cord-001734-bbeznd3r 251 23 atoms atom NNS cord-001734-bbeznd3r 251 24 in in IN cord-001734-bbeznd3r 251 25 the the DT cord-001734-bbeznd3r 251 26 MD MD NNP cord-001734-bbeznd3r 251 27 simulations simulation NNS cord-001734-bbeznd3r 251 28 ( ( -LRB- cord-001734-bbeznd3r 251 29 Fig Fig NNP cord-001734-bbeznd3r 251 30 6A 6a CD cord-001734-bbeznd3r 251 31 and and CC cord-001734-bbeznd3r 251 32 6B 6b CD cord-001734-bbeznd3r 251 33 ) ) -RRB- cord-001734-bbeznd3r 251 34 . . . cord-001734-bbeznd3r 252 1 Fig Fig NNP cord-001734-bbeznd3r 252 2 6C 6c NN cord-001734-bbeznd3r 252 3 presents present VBZ cord-001734-bbeznd3r 252 4 the the DT cord-001734-bbeznd3r 252 5 averaged average VBN cord-001734-bbeznd3r 252 6 RMSF RMSF NNP cord-001734-bbeznd3r 252 7 of of IN cord-001734-bbeznd3r 252 8 three three CD cord-001734-bbeznd3r 252 9 trajectories trajectory NNS cord-001734-bbeznd3r 252 10 for for IN cord-001734-bbeznd3r 252 11 the the DT cord-001734-bbeznd3r 252 12 isolated isolated JJ cord-001734-bbeznd3r 252 13 NS3pro NS3pro NNP cord-001734-bbeznd3r 252 14 and and CC cord-001734-bbeznd3r 252 15 NS2B NS2B NNP cord-001734-bbeznd3r 252 16 - - HYPH cord-001734-bbeznd3r 252 17 NS3pro NS3pro NNP cord-001734-bbeznd3r 252 18 complex complex NN cord-001734-bbeznd3r 252 19 . . . cord-001734-bbeznd3r 253 1 Interestingly interestingly RB cord-001734-bbeznd3r 253 2 , , , cord-001734-bbeznd3r 253 3 only only RB cord-001734-bbeznd3r 253 4 three three CD cord-001734-bbeznd3r 253 5 regions region NNS cord-001734-bbeznd3r 253 6 of of IN cord-001734-bbeznd3r 253 7 the the DT cord-001734-bbeznd3r 253 8 isolated isolated JJ cord-001734-bbeznd3r 253 9 NS3pro NS3pro NNS cord-001734-bbeznd3r 253 10 have have VBP cord-001734-bbeznd3r 253 11 slightly slightly RB cord-001734-bbeznd3r 253 12 higher high JJR cord-001734-bbeznd3r 253 13 fluctuations fluctuation NNS cord-001734-bbeznd3r 253 14 than than IN cord-001734-bbeznd3r 253 15 the the DT cord-001734-bbeznd3r 253 16 corresponding correspond VBG cord-001734-bbeznd3r 253 17 ones one NNS cord-001734-bbeznd3r 253 18 in in IN cord-001734-bbeznd3r 253 19 the the DT cord-001734-bbeznd3r 253 20 complex complex NN cord-001734-bbeznd3r 253 21 . . . cord-001734-bbeznd3r 254 1 The the DT cord-001734-bbeznd3r 254 2 highest high JJS cord-001734-bbeznd3r 254 3 structural structural JJ cord-001734-bbeznd3r 254 4 fluctuations fluctuation NNS cord-001734-bbeznd3r 254 5 are be VBP cord-001734-bbeznd3r 254 6 observed observe VBN cord-001734-bbeznd3r 254 7 on on IN cord-001734-bbeznd3r 254 8 the the DT cord-001734-bbeznd3r 254 9 NS2B NS2B NNP cord-001734-bbeznd3r 254 10 residues residue NNS cord-001734-bbeznd3r 254 11 . . . cord-001734-bbeznd3r 255 1 More more RBR cord-001734-bbeznd3r 255 2 specifically specifically RB cord-001734-bbeznd3r 255 3 , , , cord-001734-bbeznd3r 255 4 the the DT cord-001734-bbeznd3r 255 5 NS2B NS2B NNP cord-001734-bbeznd3r 255 6 residues residue NNS cord-001734-bbeznd3r 255 7 with with IN cord-001734-bbeznd3r 255 8 RMSF RMSF NNP cord-001734-bbeznd3r 256 1 > > XX cord-001734-bbeznd3r 257 1 the the DT cord-001734-bbeznd3r 257 2 average average JJ cord-001734-bbeznd3r 257 3 are be VBP cord-001734-bbeznd3r 257 4 over over IN cord-001734-bbeznd3r 257 5 N-/Cterminal n-/cterminal JJ cord-001734-bbeznd3r 257 6 residues residue NNS cord-001734-bbeznd3r 257 7 G43-Ala49 G43-Ala49 NNP cord-001734-bbeznd3r 257 8 and and CC cord-001734-bbeznd3r 257 9 Leu95-Gly96 Leu95-Gly96 NNP cord-001734-bbeznd3r 257 10 , , , cord-001734-bbeznd3r 257 11 as as RB cord-001734-bbeznd3r 257 12 well well RB cord-001734-bbeznd3r 257 13 as as IN cord-001734-bbeznd3r 257 14 Ser75-Glu89 ser75-glu89 NN cord-001734-bbeznd3r 257 15 which which WDT cord-001734-bbeznd3r 257 16 include include VBP cord-001734-bbeznd3r 257 17 the the DT cord-001734-bbeznd3r 257 18 missing miss VBG cord-001734-bbeznd3r 257 19 residues residue NNS cord-001734-bbeznd3r 257 20 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 257 21 in in IN cord-001734-bbeznd3r 257 22 all all DT cord-001734-bbeznd3r 257 23 crystal crystal NN cord-001734-bbeznd3r 257 24 structures structure NNS cord-001734-bbeznd3r 257 25 of of IN cord-001734-bbeznd3r 257 26 the the DT cord-001734-bbeznd3r 257 27 open open JJ cord-001734-bbeznd3r 257 28 form form NN cord-001734-bbeznd3r 257 29 [ [ -LRB- cord-001734-bbeznd3r 257 30 7 7 CD cord-001734-bbeznd3r 257 31 ] ] -RRB- cord-001734-bbeznd3r 257 32 . . . cord-001734-bbeznd3r 258 1 Strikingly strikingly RB cord-001734-bbeznd3r 258 2 , , , cord-001734-bbeznd3r 258 3 the the DT cord-001734-bbeznd3r 258 4 NS3pro ns3pro NN cord-001734-bbeznd3r 258 5 residues residue NNS cord-001734-bbeznd3r 258 6 with with IN cord-001734-bbeznd3r 258 7 RMSF RMSF NNP cord-001734-bbeznd3r 258 8 > > XX cord-001734-bbeznd3r 258 9 the the DT cord-001734-bbeznd3r 258 10 average average NN cord-001734-bbeznd3r 258 11 are be VBP cord-001734-bbeznd3r 258 12 not not RB cord-001734-bbeznd3r 258 13 only only RB cord-001734-bbeznd3r 258 14 over over IN cord-001734-bbeznd3r 258 15 loop loop NN cord-001734-bbeznd3r 258 16 / / SYM cord-001734-bbeznd3r 258 17 turn turn NN cord-001734-bbeznd3r 258 18 residues residue NNS cord-001734-bbeznd3r 258 19 and and CC cord-001734-bbeznd3r 258 20 C c NN cord-001734-bbeznd3r 258 21 - - HYPH cord-001734-bbeznd3r 258 22 terminal terminal NN cord-001734-bbeznd3r 258 23 residues residue NNS cord-001734-bbeznd3r 258 24 which which WDT cord-001734-bbeznd3r 258 25 include include VBP cord-001734-bbeznd3r 258 26 G29-Leu31 G29-Leu31 NNP cord-001734-bbeznd3r 258 27 , , , cord-001734-bbeznd3r 258 28 Glu43-Thr45 Glu43-Thr45 NNP cord-001734-bbeznd3r 258 29 , , , cord-001734-bbeznd3r 258 30 His60-Gly62 His60-Gly62 NNP cord-001734-bbeznd3r 258 31 , , , cord-001734-bbeznd3r 258 32 Leu85-Val95 Leu85-Val95 NNP cord-001734-bbeznd3r 258 33 , , , cord-001734-bbeznd3r 258 34 Thr118-Gly121 Thr118-Gly121 NNP cord-001734-bbeznd3r 258 35 , , , cord-001734-bbeznd3r 258 36 Gly144-Val146 Gly144-Val146 NNP cord-001734-bbeznd3r 258 37 and and CC cord-001734-bbeznd3r 258 38 Arg157-Gly159 Arg157-Gly159 NNP cord-001734-bbeznd3r 258 39 ; ; : cord-001734-bbeznd3r 258 40 but but CC cord-001734-bbeznd3r 258 41 also also RB cord-001734-bbeznd3r 258 42 over over IN cord-001734-bbeznd3r 258 43 the the DT cord-001734-bbeznd3r 258 44 short short JJ cord-001734-bbeznd3r 258 45 helix helix NN cord-001734-bbeznd3r 258 46 Val72-Lys74 Val72-Lys74 NNS cord-001734-bbeznd3r 258 47 , , , cord-001734-bbeznd3r 258 48 and and CC cord-001734-bbeznd3r 258 49 β β NN cord-001734-bbeznd3r 258 50 - - HYPH cord-001734-bbeznd3r 258 51 strands strand NNS cord-001734-bbeznd3r 258 52 Gly32-Gln35 gly32-gln35 NN cord-001734-bbeznd3r 258 53 , , , cord-001734-bbeznd3r 258 54 Lys63-Ile65 Lys63-Ile65 NNP cord-001734-bbeznd3r 258 55 , , , cord-001734-bbeznd3r 258 56 Asp75-Ile77 Asp75-Ile77 NNP cord-001734-bbeznd3r 258 57 hosting host VBG cord-001734-bbeznd3r 258 58 the the DT cord-001734-bbeznd3r 258 59 catalytic catalytic JJ cord-001734-bbeznd3r 258 60 triad triad NN cord-001734-bbeznd3r 258 61 residue residue NN cord-001734-bbeznd3r 258 62 Asp75 Asp75 NNP cord-001734-bbeznd3r 258 63 , , , cord-001734-bbeznd3r 258 64 Thr122-Val126 Thr122-Val126 NNP cord-001734-bbeznd3r 259 1 and and CC cord-001734-bbeznd3r 259 2 Gly159-Val162 Gly159-Val162 NNP cord-001734-bbeznd3r 260 1 ( ( -LRB- cord-001734-bbeznd3r 260 2 Fig Fig NNP cord-001734-bbeznd3r 260 3 6D 6D NNP cord-001734-bbeznd3r 260 4 and and CC cord-001734-bbeznd3r 260 5 6E 6E NNP cord-001734-bbeznd3r 260 6 ) ) -RRB- cord-001734-bbeznd3r 260 7 . . . cord-001734-bbeznd3r 261 1 Recently recently RB cord-001734-bbeznd3r 261 2 , , , cord-001734-bbeznd3r 261 3 we -PRON- PRP cord-001734-bbeznd3r 261 4 have have VBP cord-001734-bbeznd3r 261 5 deciphered decipher VBN cord-001734-bbeznd3r 261 6 that that IN cord-001734-bbeznd3r 261 7 a a DT cord-001734-bbeznd3r 261 8 global global JJ cord-001734-bbeznd3r 261 9 correlation correlation NN cord-001734-bbeznd3r 261 10 motion motion NN cord-001734-bbeznd3r 261 11 network network NN cord-001734-bbeznd3r 261 12 exists exist VBZ cord-001734-bbeznd3r 261 13 in in IN cord-001734-bbeznd3r 261 14 the the DT cord-001734-bbeznd3r 261 15 SARS SARS NNP cord-001734-bbeznd3r 261 16 3C 3C NNP cord-001734-bbeznd3r 261 17 - - HYPH cord-001734-bbeznd3r 261 18 like like JJ cord-001734-bbeznd3r 261 19 protease protease NN cord-001734-bbeznd3r 261 20 [ [ -LRB- cord-001734-bbeznd3r 261 21 20 20 CD cord-001734-bbeznd3r 261 22 , , , cord-001734-bbeznd3r 261 23 21 21 CD cord-001734-bbeznd3r 261 24 ] ] -RRB- cord-001734-bbeznd3r 261 25 . . . cord-001734-bbeznd3r 262 1 Remarkably remarkably RB cord-001734-bbeznd3r 262 2 , , , cord-001734-bbeznd3r 262 3 a a DT cord-001734-bbeznd3r 262 4 mutation mutation NN cord-001734-bbeznd3r 262 5 N214A n214a RB cord-001734-bbeznd3r 262 6 on on IN cord-001734-bbeznd3r 262 7 the the DT cord-001734-bbeznd3r 262 8 extra extra JJ cord-001734-bbeznd3r 262 9 domain domain NN cord-001734-bbeznd3r 262 10 which which WDT cord-001734-bbeznd3r 262 11 is be VBZ cord-001734-bbeznd3r 262 12 far far RB cord-001734-bbeznd3r 262 13 away away RB cord-001734-bbeznd3r 262 14 from from IN cord-001734-bbeznd3r 262 15 the the DT cord-001734-bbeznd3r 262 16 active active JJ cord-001734-bbeznd3r 262 17 site site NN cord-001734-bbeznd3r 262 18 is be VBZ cord-001734-bbeznd3r 262 19 sufficient sufficient JJ cord-001734-bbeznd3r 262 20 to to TO cord-001734-bbeznd3r 262 21 decouple decouple VB cord-001734-bbeznd3r 262 22 the the DT cord-001734-bbeznd3r 262 23 correlated correlate VBN cord-001734-bbeznd3r 262 24 motions motion NNS cord-001734-bbeznd3r 262 25 and and CC cord-001734-bbeznd3r 262 26 consequently consequently RB cord-001734-bbeznd3r 262 27 leads lead VBZ cord-001734-bbeznd3r 262 28 to to IN cord-001734-bbeznd3r 262 29 the the DT cord-001734-bbeznd3r 262 30 inactivation inactivation NN cord-001734-bbeznd3r 262 31 of of IN cord-001734-bbeznd3r 262 32 the the DT cord-001734-bbeznd3r 262 33 enzymatic enzymatic JJ cord-001734-bbeznd3r 262 34 catalysis catalysis NN cord-001734-bbeznd3r 262 35 . . . cord-001734-bbeznd3r 263 1 Here here RB cord-001734-bbeznd3r 263 2 , , , cord-001734-bbeznd3r 263 3 the the DT cord-001734-bbeznd3r 263 4 correlation correlation NN cord-001734-bbeznd3r 263 5 analysis analysis NN cord-001734-bbeznd3r 263 6 of of IN cord-001734-bbeznd3r 263 7 the the DT cord-001734-bbeznd3r 263 8 MD MD NNP cord-001734-bbeznd3r 263 9 simulation simulation NN cord-001734-bbeznd3r 263 10 trajectories trajectory NNS cord-001734-bbeznd3r 263 11 revealed reveal VBD cord-001734-bbeznd3r 263 12 that that IN cord-001734-bbeznd3r 263 13 like like IN cord-001734-bbeznd3r 263 14 the the DT cord-001734-bbeznd3r 263 15 SARS SARS NNP cord-001734-bbeznd3r 263 16 3C 3C NNP cord-001734-bbeznd3r 263 17 - - HYPH cord-001734-bbeznd3r 263 18 like like JJ cord-001734-bbeznd3r 263 19 protease protease NN cord-001734-bbeznd3r 263 20 , , , cord-001734-bbeznd3r 263 21 a a DT cord-001734-bbeznd3r 263 22 global global JJ cord-001734-bbeznd3r 263 23 correlation correlation NN cord-001734-bbeznd3r 263 24 network network NN cord-001734-bbeznd3r 263 25 does do VBZ cord-001734-bbeznd3r 263 26 exist exist VB cord-001734-bbeznd3r 263 27 in in IN cord-001734-bbeznd3r 263 28 the the DT cord-001734-bbeznd3r 263 29 NS2B NS2B NNP cord-001734-bbeznd3r 263 30 - - HYPH cord-001734-bbeznd3r 263 31 NS3pro NS3pro NNP cord-001734-bbeznd3r 263 32 complex complex NN cord-001734-bbeznd3r 263 33 . . . cord-001734-bbeznd3r 264 1 Most most RBS cord-001734-bbeznd3r 264 2 strikingly strikingly RB cord-001734-bbeznd3r 264 3 , , , cord-001734-bbeznd3r 264 4 in in IN cord-001734-bbeznd3r 264 5 this this DT cord-001734-bbeznd3r 264 6 network network NN cord-001734-bbeznd3r 264 7 , , , cord-001734-bbeznd3r 264 8 the the DT cord-001734-bbeznd3r 264 9 majority majority NN cord-001734-bbeznd3r 264 10 of of IN cord-001734-bbeznd3r 264 11 the the DT cord-001734-bbeznd3r 264 12 significant significant JJ cord-001734-bbeznd3r 264 13 correlated correlate VBN cord-001734-bbeznd3r 264 14 motions motion NNS cord-001734-bbeznd3r 264 15 are be VBP cord-001734-bbeznd3r 264 16 established establish VBN cord-001734-bbeznd3r 264 17 between between IN cord-001734-bbeznd3r 264 18 the the DT cord-001734-bbeznd3r 264 19 cofactor cofactor NN cord-001734-bbeznd3r 264 20 and and CC cord-001734-bbeznd3r 264 21 NS3pro ns3pro NN cord-001734-bbeznd3r 264 22 residues residue NNS cord-001734-bbeznd3r 264 23 ( ( -LRB- cord-001734-bbeznd3r 264 24 Fig Fig NNP cord-001734-bbeznd3r 264 25 7A 7a NN cord-001734-bbeznd3r 264 26 ) ) -RRB- cord-001734-bbeznd3r 264 27 . . . cord-001734-bbeznd3r 265 1 Surprisingly surprisingly RB cord-001734-bbeznd3r 265 2 , , , cord-001734-bbeznd3r 265 3 although although IN cord-001734-bbeznd3r 265 4 the the DT cord-001734-bbeznd3r 265 5 cofactor cofactor NN cord-001734-bbeznd3r 265 6 residues residue NNS cord-001734-bbeznd3r 265 7 Ser44-Glu63 ser44-glu63 NN cord-001734-bbeznd3r 265 8 , , , cord-001734-bbeznd3r 265 9 Ser75-Thr94 ser75-thr94 NN cord-001734-bbeznd3r 265 10 are be VBP cord-001734-bbeznd3r 265 11 highly highly RB cord-001734-bbeznd3r 265 12 dynamic dynamic JJ cord-001734-bbeznd3r 265 13 in in IN cord-001734-bbeznd3r 265 14 the the DT cord-001734-bbeznd3r 265 15 MD MD NNP cord-001734-bbeznd3r 265 16 simulations simulation NNS cord-001734-bbeznd3r 265 17 , , , cord-001734-bbeznd3r 265 18 and and CC cord-001734-bbeznd3r 265 19 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 265 20 are be VBP cord-001734-bbeznd3r 265 21 even even RB cord-001734-bbeznd3r 265 22 missing miss VBG cord-001734-bbeznd3r 265 23 in in IN cord-001734-bbeznd3r 265 24 all all DT cord-001734-bbeznd3r 265 25 crystal crystal NN cord-001734-bbeznd3r 265 26 structures structure NNS cord-001734-bbeznd3r 265 27 of of IN cord-001734-bbeznd3r 265 28 the the DT cord-001734-bbeznd3r 265 29 open open JJ cord-001734-bbeznd3r 265 30 form form NN cord-001734-bbeznd3r 265 31 , , , cord-001734-bbeznd3r 265 32 they -PRON- PRP cord-001734-bbeznd3r 265 33 were be VBD cord-001734-bbeznd3r 265 34 revealed reveal VBN cord-001734-bbeznd3r 265 35 to to TO cord-001734-bbeznd3r 265 36 play play VB cord-001734-bbeznd3r 265 37 a a DT cord-001734-bbeznd3r 265 38 key key JJ cord-001734-bbeznd3r 265 39 role role NN cord-001734-bbeznd3r 265 40 in in IN cord-001734-bbeznd3r 265 41 coordinating coordinate VBG cord-001734-bbeznd3r 265 42 the the DT cord-001734-bbeznd3r 265 43 correlated correlate VBN cord-001734-bbeznd3r 265 44 motions motion NNS cord-001734-bbeznd3r 265 45 with with IN cord-001734-bbeznd3r 265 46 the the DT cord-001734-bbeznd3r 265 47 NS3pro NS3pro NNP cord-001734-bbeznd3r 265 48 residues residue NNS cord-001734-bbeznd3r 265 49 Asp20-Gln28 asp20-gln28 JJ cord-001734-bbeznd3r 265 50 , , , cord-001734-bbeznd3r 265 51 Gly39-Gly44 Gly39-Gly44 NNP cord-001734-bbeznd3r 265 52 , , , cord-001734-bbeznd3r 265 53 Met59-Glu66 Met59-Glu66 NNP cord-001734-bbeznd3r 265 54 , , , cord-001734-bbeznd3r 265 55 Ly84-Val95 Ly84-Val95 NNP cord-001734-bbeznd3r 265 56 , , , cord-001734-bbeznd3r 265 57 Pro106-Gln110 Pro106-Gln110 NNP cord-001734-bbeznd3r 265 58 , , , cord-001734-bbeznd3r 265 59 and and CC cord-001734-bbeznd3r 265 60 Lys145-Gly148 Lys145-Gly148 NNP cord-001734-bbeznd3r 265 61 , , , cord-001734-bbeznd3r 265 62 which which WDT cord-001734-bbeznd3r 265 63 cover cover VBP cord-001734-bbeznd3r 265 64 not not RB cord-001734-bbeznd3r 265 65 only only RB cord-001734-bbeznd3r 265 66 the the DT cord-001734-bbeznd3r 265 67 residues residue NNS cord-001734-bbeznd3r 265 68 having have VBG cord-001734-bbeznd3r 265 69 direct direct JJ cord-001734-bbeznd3r 265 70 contacts contact NNS cord-001734-bbeznd3r 265 71 with with IN cord-001734-bbeznd3r 265 72 the the DT cord-001734-bbeznd3r 265 73 cofactor cofactor NN cord-001734-bbeznd3r 265 74 , , , cord-001734-bbeznd3r 265 75 but but CC cord-001734-bbeznd3r 265 76 also also RB cord-001734-bbeznd3r 265 77 residues residue NNS cord-001734-bbeznd3r 265 78 located locate VBN cord-001734-bbeznd3r 265 79 far far RB cord-001734-bbeznd3r 265 80 away away RB cord-001734-bbeznd3r 265 81 from from IN cord-001734-bbeznd3r 265 82 the the DT cord-001734-bbeznd3r 265 83 cofactor cofactor NN cord-001734-bbeznd3r 265 84 ( ( -LRB- cord-001734-bbeznd3r 265 85 Fig Fig NNP cord-001734-bbeznd3r 265 86 7B 7b NN cord-001734-bbeznd3r 265 87 and and CC cord-001734-bbeznd3r 265 88 7C 7C NNP cord-001734-bbeznd3r 265 89 ) ) -RRB- cord-001734-bbeznd3r 265 90 . . . cord-001734-bbeznd3r 266 1 Furthermore furthermore RB cord-001734-bbeznd3r 266 2 , , , cord-001734-bbeznd3r 266 3 the the DT cord-001734-bbeznd3r 266 4 global global JJ cord-001734-bbeznd3r 266 5 correlation correlation NN cord-001734-bbeznd3r 266 6 network network NN cord-001734-bbeznd3r 266 7 is be VBZ cord-001734-bbeznd3r 266 8 largely largely RB cord-001734-bbeznd3r 266 9 eliminated eliminate VBN cord-001734-bbeznd3r 266 10 as as IN cord-001734-bbeznd3r 266 11 uncovered uncover VBN cord-001734-bbeznd3r 266 12 by by IN cord-001734-bbeznd3r 266 13 the the DT cord-001734-bbeznd3r 266 14 correlation correlation NN cord-001734-bbeznd3r 266 15 analysis analysis NN cord-001734-bbeznd3r 266 16 of of IN cord-001734-bbeznd3r 266 17 the the DT cord-001734-bbeznd3r 266 18 MD MD NNP cord-001734-bbeznd3r 266 19 trajectories trajectory NNS cord-001734-bbeznd3r 266 20 of of IN cord-001734-bbeznd3r 266 21 the the DT cord-001734-bbeznd3r 266 22 isolated isolated JJ cord-001734-bbeznd3r 266 23 NS3pro ns3pro NN cord-001734-bbeznd3r 266 24 with with IN cord-001734-bbeznd3r 266 25 the the DT cord-001734-bbeznd3r 266 26 NS2B NS2B NNP cord-001734-bbeznd3r 266 27 cofactor cofactor NN cord-001734-bbeznd3r 266 28 removed remove VBN cord-001734-bbeznd3r 266 29 ( ( -LRB- cord-001734-bbeznd3r 266 30 Fig Fig NNP cord-001734-bbeznd3r 266 31 7D 7D NNP cord-001734-bbeznd3r 266 32 ) ) -RRB- cord-001734-bbeznd3r 266 33 , , , cord-001734-bbeznd3r 266 34 which which WDT cord-001734-bbeznd3r 266 35 is be VBZ cord-001734-bbeznd3r 266 36 similar similar JJ cord-001734-bbeznd3r 266 37 to to IN cord-001734-bbeznd3r 266 38 what what WP cord-001734-bbeznd3r 266 39 was be VBD cord-001734-bbeznd3r 266 40 observed observe VBN cord-001734-bbeznd3r 266 41 on on IN cord-001734-bbeznd3r 266 42 the the DT cord-001734-bbeznd3r 266 43 inactivated inactivate VBN cord-001734-bbeznd3r 266 44 N214A N214A NNP cord-001734-bbeznd3r 266 45 mutant mutant NN cord-001734-bbeznd3r 266 46 of of IN cord-001734-bbeznd3r 266 47 the the DT cord-001734-bbeznd3r 266 48 SARS SARS NNP cord-001734-bbeznd3r 266 49 3C 3C NNP cord-001734-bbeznd3r 266 50 - - HYPH cord-001734-bbeznd3r 266 51 like like JJ cord-001734-bbeznd3r 266 52 protease protease NN cord-001734-bbeznd3r 266 53 [ [ -LRB- cord-001734-bbeznd3r 266 54 19 19 CD cord-001734-bbeznd3r 266 55 , , , cord-001734-bbeznd3r 266 56 20 20 CD cord-001734-bbeznd3r 266 57 ] ] -RRB- cord-001734-bbeznd3r 266 58 . . . cord-001734-bbeznd3r 267 1 Therefore therefore RB cord-001734-bbeznd3r 267 2 , , , cord-001734-bbeznd3r 267 3 as as IN cord-001734-bbeznd3r 267 4 implied imply VBN cord-001734-bbeznd3r 267 5 by by IN cord-001734-bbeznd3r 267 6 our -PRON- PRP$ cord-001734-bbeznd3r 267 7 previous previous JJ cord-001734-bbeznd3r 267 8 results result NNS cord-001734-bbeznd3r 267 9 with with IN cord-001734-bbeznd3r 267 10 the the DT cord-001734-bbeznd3r 267 11 SARS SARS NNP cord-001734-bbeznd3r 267 12 3C 3C NNP cord-001734-bbeznd3r 267 13 - - HYPH cord-001734-bbeznd3r 267 14 like like JJ cord-001734-bbeznd3r 267 15 protease protease NN cord-001734-bbeznd3r 267 16 , , , cord-001734-bbeznd3r 267 17 slight slight JJ cord-001734-bbeznd3r 267 18 manipulations manipulation NNS cord-001734-bbeznd3r 267 19 of of IN cord-001734-bbeznd3r 267 20 the the DT cord-001734-bbeznd3r 267 21 NS2B NS2B NNP cord-001734-bbeznd3r 267 22 - - HYPH cord-001734-bbeznd3r 267 23 NS3pro ns3pro NN cord-001734-bbeznd3r 267 24 interface interface NN cord-001734-bbeznd3r 267 25 may may MD cord-001734-bbeznd3r 267 26 be be VB cord-001734-bbeznd3r 267 27 sufficient sufficient JJ cord-001734-bbeznd3r 267 28 to to TO cord-001734-bbeznd3r 267 29 decouple decouple VB cord-001734-bbeznd3r 267 30 the the DT cord-001734-bbeznd3r 267 31 correlation correlation NN cord-001734-bbeznd3r 267 32 network network NN cord-001734-bbeznd3r 267 33 to to TO cord-001734-bbeznd3r 267 34 inactivate inactivate VB cord-001734-bbeznd3r 267 35 the the DT cord-001734-bbeznd3r 267 36 activity activity NN cord-001734-bbeznd3r 267 37 of of IN cord-001734-bbeznd3r 267 38 the the DT cord-001734-bbeznd3r 267 39 dengue dengue NN cord-001734-bbeznd3r 267 40 protease protease NN cord-001734-bbeznd3r 267 41 . . . cord-001734-bbeznd3r 268 1 The the DT cord-001734-bbeznd3r 268 2 conformation conformation NN cord-001734-bbeznd3r 268 3 and and CC cord-001734-bbeznd3r 268 4 activity activity NN cord-001734-bbeznd3r 268 5 of of IN cord-001734-bbeznd3r 268 6 the the DT cord-001734-bbeznd3r 268 7 refolded refolde VBN cord-001734-bbeznd3r 268 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 268 9 in in IN cord-001734-bbeznd3r 268 10 complex complex NN cord-001734-bbeznd3r 268 11 with with IN cord-001734-bbeznd3r 268 12 NS2B NS2B NNP cord-001734-bbeznd3r 268 13 ( ( -LRB- cord-001734-bbeznd3r 268 14 48 48 CD cord-001734-bbeznd3r 268 15 - - SYM cord-001734-bbeznd3r 268 16 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 268 17 - - SYM cord-001734-bbeznd3r 268 18 84 84 CD cord-001734-bbeznd3r 268 19 ) ) -RRB- cord-001734-bbeznd3r 269 1 Although although IN cord-001734-bbeznd3r 269 2 residues residue NNS cord-001734-bbeznd3r 269 3 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 269 4 are be VBP cord-001734-bbeznd3r 269 5 missing miss VBG cord-001734-bbeznd3r 269 6 in in IN cord-001734-bbeznd3r 269 7 all all DT cord-001734-bbeznd3r 269 8 crystal crystal NN cord-001734-bbeznd3r 269 9 structures structure NNS cord-001734-bbeznd3r 269 10 of of IN cord-001734-bbeznd3r 269 11 the the DT cord-001734-bbeznd3r 269 12 open open JJ cord-001734-bbeznd3r 269 13 form form NN cord-001734-bbeznd3r 269 14 , , , cord-001734-bbeznd3r 269 15 they -PRON- PRP cord-001734-bbeznd3r 269 16 were be VBD cord-001734-bbeznd3r 269 17 revealed reveal VBN cord-001734-bbeznd3r 269 18 by by IN cord-001734-bbeznd3r 269 19 MD MD NNP cord-001734-bbeznd3r 269 20 simulations simulation NNS cord-001734-bbeznd3r 269 21 to to TO cord-001734-bbeznd3r 269 22 play play VB cord-001734-bbeznd3r 269 23 a a DT cord-001734-bbeznd3r 269 24 key key JJ cord-001734-bbeznd3r 269 25 role role NN cord-001734-bbeznd3r 269 26 in in IN cord-001734-bbeznd3r 269 27 coordinating coordinate VBG cord-001734-bbeznd3r 269 28 the the DT cord-001734-bbeznd3r 269 29 correlated correlate VBN cord-001734-bbeznd3r 269 30 motions motion NNS cord-001734-bbeznd3r 269 31 with with IN cord-001734-bbeznd3r 269 32 the the DT cord-001734-bbeznd3r 269 33 NS3pro NS3pro NNP cord-001734-bbeznd3r 269 34 residues residue NNS cord-001734-bbeznd3r 269 35 . . . cord-001734-bbeznd3r 270 1 Therefore therefore RB cord-001734-bbeznd3r 270 2 , , , cord-001734-bbeznd3r 270 3 we -PRON- PRP cord-001734-bbeznd3r 270 4 generated generate VBD cord-001734-bbeznd3r 270 5 a a DT cord-001734-bbeznd3r 270 6 truncated truncated JJ cord-001734-bbeznd3r 270 7 NS2B NS2B NNS cord-001734-bbeznd3r 270 8 ( ( -LRB- cord-001734-bbeznd3r 270 9 48 48 CD cord-001734-bbeznd3r 270 10 - - SYM cord-001734-bbeznd3r 270 11 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 270 12 - - SYM cord-001734-bbeznd3r 270 13 84 84 CD cord-001734-bbeznd3r 270 14 ) ) -RRB- cord-001734-bbeznd3r 270 15 in in IN cord-001734-bbeznd3r 270 16 which which WDT cord-001734-bbeznd3r 270 17 the the DT cord-001734-bbeznd3r 270 18 residues residue NNS cord-001734-bbeznd3r 270 19 Thr77-Met84 thr77-met84 NN cord-001734-bbeznd3r 270 20 were be VBD cord-001734-bbeznd3r 270 21 replaced replace VBN cord-001734-bbeznd3r 270 22 by by IN cord-001734-bbeznd3r 270 23 three three CD cord-001734-bbeznd3r 270 24 Gly Gly NNP cord-001734-bbeznd3r 270 25 residues residue NNS cord-001734-bbeznd3r 270 26 and and CC cord-001734-bbeznd3r 270 27 subsequently subsequently RB cord-001734-bbeznd3r 270 28 conducted conduct VBD cord-001734-bbeznd3r 270 29 the the DT cord-001734-bbeznd3r 270 30 refolding refolding NN cord-001734-bbeznd3r 270 31 of of IN cord-001734-bbeznd3r 270 32 NS2B NS2B NNP cord-001734-bbeznd3r 270 33 ( ( -LRB- cord-001734-bbeznd3r 270 34 48 48 CD cord-001734-bbeznd3r 270 35 - - SYM cord-001734-bbeznd3r 270 36 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 270 37 - - SYM cord-001734-bbeznd3r 270 38 84 84 CD cord-001734-bbeznd3r 270 39 ) ) -RRB- cord-001734-bbeznd3r 270 40 with with IN cord-001734-bbeznd3r 270 41 NS3pro NS3pro NNS cord-001734-bbeznd3r 270 42 using use VBG cord-001734-bbeznd3r 270 43 the the DT cord-001734-bbeznd3r 270 44 same same JJ cord-001734-bbeznd3r 270 45 protocol protocol NN cord-001734-bbeznd3r 270 46 for for IN cord-001734-bbeznd3r 270 47 refolding refolde VBG cord-001734-bbeznd3r 270 48 of of IN cord-001734-bbeznd3r 270 49 NS2B NS2B NNP cord-001734-bbeznd3r 270 50 . . . cord-001734-bbeznd3r 271 1 Interestingly interestingly RB cord-001734-bbeznd3r 271 2 , , , cord-001734-bbeznd3r 271 3 although although IN cord-001734-bbeznd3r 271 4 the the DT cord-001734-bbeznd3r 271 5 isolated isolated JJ cord-001734-bbeznd3r 271 6 NS3pro ns3pro NN cord-001734-bbeznd3r 271 7 is be VBZ cord-001734-bbeznd3r 271 8 completely completely RB cord-001734-bbeznd3r 271 9 insoluble insoluble JJ cord-001734-bbeznd3r 271 10 in in IN cord-001734-bbeznd3r 271 11 buffer buffer NN cord-001734-bbeznd3r 271 12 , , , cord-001734-bbeznd3r 271 13 the the DT cord-001734-bbeznd3r 271 14 NS3pro NS3pro NNP cord-001734-bbeznd3r 271 15 became become VBD cord-001734-bbeznd3r 271 16 highly highly RB cord-001734-bbeznd3r 271 17 soluble soluble JJ cord-001734-bbeznd3r 271 18 in in IN cord-001734-bbeznd3r 271 19 buffer buffer NN cord-001734-bbeznd3r 271 20 at at IN cord-001734-bbeznd3r 271 21 pH pH NNP cord-001734-bbeznd3r 271 22 7.5 7.5 CD cord-001734-bbeznd3r 271 23 in in IN cord-001734-bbeznd3r 271 24 the the DT cord-001734-bbeznd3r 271 25 presence presence NN cord-001734-bbeznd3r 271 26 of of IN cord-001734-bbeznd3r 271 27 NS2B NS2B NNP cord-001734-bbeznd3r 271 28 ( ( -LRB- cord-001734-bbeznd3r 271 29 48 48 CD cord-001734-bbeznd3r 271 30 - - SYM cord-001734-bbeznd3r 271 31 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 271 32 - - SYM cord-001734-bbeznd3r 271 33 84 84 CD cord-001734-bbeznd3r 271 34 ) ) -RRB- cord-001734-bbeznd3r 271 35 . . . cord-001734-bbeznd3r 272 1 This this DT cord-001734-bbeznd3r 272 2 suggests suggest VBZ cord-001734-bbeznd3r 272 3 that that IN cord-001734-bbeznd3r 272 4 NS3pro NS3pro NNP cord-001734-bbeznd3r 272 5 forms form VBZ cord-001734-bbeznd3r 272 6 a a DT cord-001734-bbeznd3r 272 7 complex complex NN cord-001734-bbeznd3r 272 8 with with IN cord-001734-bbeznd3r 272 9 NS2B NS2B NNP cord-001734-bbeznd3r 272 10 ( ( -LRB- cord-001734-bbeznd3r 272 11 48 48 CD cord-001734-bbeznd3r 272 12 - - SYM cord-001734-bbeznd3r 272 13 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 272 14 - - SYM cord-001734-bbeznd3r 272 15 84 84 CD cord-001734-bbeznd3r 272 16 ) ) -RRB- cord-001734-bbeznd3r 272 17 and and CC cord-001734-bbeznd3r 272 18 the the DT cord-001734-bbeznd3r 272 19 complex complex NN cord-001734-bbeznd3r 272 20 is be VBZ cord-001734-bbeznd3r 272 21 soluble soluble JJ cord-001734-bbeznd3r 272 22 in in IN cord-001734-bbeznd3r 272 23 buffer buffer NN cord-001734-bbeznd3r 272 24 . . . cord-001734-bbeznd3r 273 1 Indeed indeed RB cord-001734-bbeznd3r 273 2 , , , cord-001734-bbeznd3r 273 3 as as IN cord-001734-bbeznd3r 273 4 shown show VBN cord-001734-bbeznd3r 273 5 in in IN cord-001734-bbeznd3r 273 6 , , , cord-001734-bbeznd3r 273 7 the the DT cord-001734-bbeznd3r 273 8 decovolution decovolution NN cord-001734-bbeznd3r 273 9 analysis analysis NN cord-001734-bbeznd3r 273 10 of of IN cord-001734-bbeznd3r 273 11 the the DT cord-001734-bbeznd3r 273 12 far far JJ cord-001734-bbeznd3r 273 13 - - HYPH cord-001734-bbeznd3r 273 14 UV uv NN cord-001734-bbeznd3r 273 15 CD cd NN cord-001734-bbeznd3r 273 16 spectrum spectrum NN cord-001734-bbeznd3r 273 17 ( ( -LRB- cord-001734-bbeznd3r 273 18 Fig Fig NNP cord-001734-bbeznd3r 273 19 8A 8a NN cord-001734-bbeznd3r 273 20 ) ) -RRB- cord-001734-bbeznd3r 273 21 reveals reveal VBZ cord-001734-bbeznd3r 273 22 that that IN cord-001734-bbeznd3r 273 23 the the DT cord-001734-bbeznd3r 273 24 NS2B NS2B NNP cord-001734-bbeznd3r 273 25 ( ( -LRB- cord-001734-bbeznd3r 273 26 48 48 CD cord-001734-bbeznd3r 273 27 - - SYM cord-001734-bbeznd3r 273 28 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 273 29 - - HYPH cord-001734-bbeznd3r 273 30 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 273 31 complex complex NN cord-001734-bbeznd3r 273 32 contains contain VBZ cord-001734-bbeznd3r 273 33 19 19 CD cord-001734-bbeznd3r 273 34 % % NN cord-001734-bbeznd3r 273 35 helix helix NN cord-001734-bbeznd3r 273 36 , , , cord-001734-bbeznd3r 273 37 much much RB cord-001734-bbeznd3r 273 38 higher high JJR cord-001734-bbeznd3r 273 39 than than IN cord-001734-bbeznd3r 273 40 those those DT cord-001734-bbeznd3r 273 41 of of IN cord-001734-bbeznd3r 273 42 the the DT cord-001734-bbeznd3r 273 43 isolated isolated JJ cord-001734-bbeznd3r 273 44 NS3pro ns3pro NN cord-001734-bbeznd3r 273 45 ( ( -LRB- cord-001734-bbeznd3r 273 46 4 4 CD cord-001734-bbeznd3r 273 47 % % NN cord-001734-bbeznd3r 273 48 ) ) -RRB- cord-001734-bbeznd3r 273 49 , , , cord-001734-bbeznd3r 273 50 and and CC cord-001734-bbeznd3r 273 51 NS2B NS2B NNP cord-001734-bbeznd3r 273 52 ( ( -LRB- cord-001734-bbeznd3r 273 53 48 48 CD cord-001734-bbeznd3r 273 54 - - SYM cord-001734-bbeznd3r 273 55 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 273 56 complex complex NN cord-001734-bbeznd3r 273 57 ( ( -LRB- cord-001734-bbeznd3r 273 58 8 8 CD cord-001734-bbeznd3r 273 59 % % NN cord-001734-bbeznd3r 273 60 ) ) -RRB- cord-001734-bbeznd3r 273 61 . . . cord-001734-bbeznd3r 274 1 On on IN cord-001734-bbeznd3r 274 2 the the DT cord-001734-bbeznd3r 274 3 other other JJ cord-001734-bbeznd3r 274 4 hand hand NN cord-001734-bbeznd3r 274 5 , , , cord-001734-bbeznd3r 274 6 the the DT cord-001734-bbeznd3r 274 7 NS2B NS2B NNP cord-001734-bbeznd3r 274 8 ( ( -LRB- cord-001734-bbeznd3r 274 9 48 48 CD cord-001734-bbeznd3r 274 10 - - SYM cord-001734-bbeznd3r 274 11 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 274 12 - - HYPH cord-001734-bbeznd3r 274 13 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 274 14 complex complex NN cord-001734-bbeznd3r 274 15 contains contain VBZ cord-001734-bbeznd3r 274 16 much much RB cord-001734-bbeznd3r 274 17 lower low JJR cord-001734-bbeznd3r 274 18 strand strand NN cord-001734-bbeznd3r 274 19 ( ( -LRB- cord-001734-bbeznd3r 274 20 8 8 CD cord-001734-bbeznd3r 274 21 % % NN cord-001734-bbeznd3r 274 22 ) ) -RRB- cord-001734-bbeznd3r 274 23 but but CC cord-001734-bbeznd3r 274 24 higher high JJR cord-001734-bbeznd3r 274 25 ( ( -LRB- cord-001734-bbeznd3r 274 26 36 36 CD cord-001734-bbeznd3r 274 27 % % NN cord-001734-bbeznd3r 274 28 ) ) -RRB- cord-001734-bbeznd3r 274 29 turn turn NN cord-001734-bbeznd3r 274 30 conformations conformation NNS cord-001734-bbeznd3r 274 31 than than IN cord-001734-bbeznd3r 274 32 the the DT cord-001734-bbeznd3r 274 33 isolated isolated JJ cord-001734-bbeznd3r 274 34 NS3pro NS3pro NNP cord-001734-bbeznd3r 274 35 and and CC cord-001734-bbeznd3r 274 36 NS2B NS2B NNP cord-001734-bbeznd3r 274 37 ( ( -LRB- cord-001734-bbeznd3r 274 38 48 48 CD cord-001734-bbeznd3r 274 39 - - SYM cord-001734-bbeznd3r 274 40 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 274 41 complex complex NN cord-001734-bbeznd3r 274 42 . . . cord-001734-bbeznd3r 275 1 Interestingly interestingly RB cord-001734-bbeznd3r 275 2 , , , cord-001734-bbeznd3r 275 3 the the DT cord-001734-bbeznd3r 275 4 NS2B NS2B NNP cord-001734-bbeznd3r 275 5 ( ( -LRB- cord-001734-bbeznd3r 275 6 48 48 CD cord-001734-bbeznd3r 275 7 - - SYM cord-001734-bbeznd3r 275 8 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 275 9 - - HYPH cord-001734-bbeznd3r 275 10 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 275 11 complex complex NN cord-001734-bbeznd3r 275 12 has have VBZ cord-001734-bbeznd3r 275 13 ~37 ~37 NFP cord-001734-bbeznd3r 275 14 % % NN cord-001734-bbeznd3r 275 15 unstructured unstructured JJ cord-001734-bbeznd3r 275 16 conformation conformation NN cord-001734-bbeznd3r 275 17 , , , cord-001734-bbeznd3r 275 18 slightly slightly RB cord-001734-bbeznd3r 275 19 higher high JJR cord-001734-bbeznd3r 275 20 than than IN cord-001734-bbeznd3r 275 21 that that DT cord-001734-bbeznd3r 275 22 of of IN cord-001734-bbeznd3r 275 23 the the DT cord-001734-bbeznd3r 275 24 NS2B NS2B NNP cord-001734-bbeznd3r 275 25 ( ( -LRB- cord-001734-bbeznd3r 275 26 48 48 CD cord-001734-bbeznd3r 275 27 - - SYM cord-001734-bbeznd3r 275 28 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 275 29 complex complex NN cord-001734-bbeznd3r 275 30 ( ( -LRB- cord-001734-bbeznd3r 275 31 31 31 CD cord-001734-bbeznd3r 275 32 % % NN cord-001734-bbeznd3r 275 33 ) ) -RRB- cord-001734-bbeznd3r 275 34 , , , cord-001734-bbeznd3r 275 35 but but CC cord-001734-bbeznd3r 275 36 much much RB cord-001734-bbeznd3r 275 37 lower low JJR cord-001734-bbeznd3r 275 38 than than IN cord-001734-bbeznd3r 275 39 that that DT cord-001734-bbeznd3r 275 40 of of IN cord-001734-bbeznd3r 275 41 the the DT cord-001734-bbeznd3r 275 42 isolated isolated JJ cord-001734-bbeznd3r 275 43 NS3pro ns3pro NN cord-001734-bbeznd3r 275 44 ( ( -LRB- cord-001734-bbeznd3r 275 45 53 53 CD cord-001734-bbeznd3r 275 46 % % NN cord-001734-bbeznd3r 275 47 ) ) -RRB- cord-001734-bbeznd3r 275 48 . . . cord-001734-bbeznd3r 276 1 These these DT cord-001734-bbeznd3r 276 2 results result NNS cord-001734-bbeznd3r 276 3 indicate indicate VBP cord-001734-bbeznd3r 276 4 that that IN cord-001734-bbeznd3r 276 5 the the DT cord-001734-bbeznd3r 276 6 NS2B NS2B NNP cord-001734-bbeznd3r 276 7 ( ( -LRB- cord-001734-bbeznd3r 276 8 48 48 CD cord-001734-bbeznd3r 276 9 - - SYM cord-001734-bbeznd3r 276 10 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 276 11 - - HYPH cord-001734-bbeznd3r 276 12 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 276 13 complex complex NN cord-001734-bbeznd3r 276 14 has have VBZ cord-001734-bbeznd3r 276 15 a a DT cord-001734-bbeznd3r 276 16 very very RB cord-001734-bbeznd3r 276 17 different different JJ cord-001734-bbeznd3r 276 18 structure structure NN cord-001734-bbeznd3r 276 19 from from IN cord-001734-bbeznd3r 276 20 either either CC cord-001734-bbeznd3r 276 21 isolated isolate VBN cord-001734-bbeznd3r 276 22 NS3pro NS3pro NNP cord-001734-bbeznd3r 276 23 or or CC cord-001734-bbeznd3r 276 24 NS2B NS2B NNP cord-001734-bbeznd3r 276 25 ( ( -LRB- cord-001734-bbeznd3r 276 26 48 48 CD cord-001734-bbeznd3r 276 27 - - SYM cord-001734-bbeznd3r 276 28 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 276 29 complex complex NN cord-001734-bbeznd3r 276 30 . . . cord-001734-bbeznd3r 277 1 Indeed indeed RB cord-001734-bbeznd3r 277 2 , , , cord-001734-bbeznd3r 277 3 very very RB cord-001734-bbeznd3r 277 4 different different JJ cord-001734-bbeznd3r 277 5 from from IN cord-001734-bbeznd3r 277 6 the the DT cord-001734-bbeznd3r 277 7 HSQC HSQC NNP cord-001734-bbeznd3r 277 8 spectra spectra NN cord-001734-bbeznd3r 277 9 of of IN cord-001734-bbeznd3r 277 10 the the DT cord-001734-bbeznd3r 277 11 isolated isolated JJ cord-001734-bbeznd3r 277 12 NS3pro ns3pro NN cord-001734-bbeznd3r 277 13 ( ( -LRB- cord-001734-bbeznd3r 277 14 Fig fig NN cord-001734-bbeznd3r 277 15 1B 1b CD cord-001734-bbeznd3r 277 16 ) ) -RRB- cord-001734-bbeznd3r 277 17 or or CC cord-001734-bbeznd3r 278 1 NS2B NS2B NNP cord-001734-bbeznd3r 278 2 ( ( -LRB- cord-001734-bbeznd3r 278 3 48 48 CD cord-001734-bbeznd3r 278 4 - - SYM cord-001734-bbeznd3r 278 5 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 278 6 complex complex NN cord-001734-bbeznd3r 278 7 ( ( -LRB- cord-001734-bbeznd3r 278 8 Fig Fig NNP cord-001734-bbeznd3r 278 9 4D 4d CD cord-001734-bbeznd3r 278 10 ) ) -RRB- cord-001734-bbeznd3r 278 11 , , , cord-001734-bbeznd3r 278 12 only only RB cord-001734-bbeznd3r 278 13 a a DT cord-001734-bbeznd3r 278 14 small small JJ cord-001734-bbeznd3r 278 15 set set NN cord-001734-bbeznd3r 278 16 of of IN cord-001734-bbeznd3r 278 17 HSQC HSQC NNP cord-001734-bbeznd3r 278 18 peaks peak NNS cord-001734-bbeznd3r 278 19 could could MD cord-001734-bbeznd3r 278 20 be be VB cord-001734-bbeznd3r 278 21 detected detect VBN cord-001734-bbeznd3r 278 22 for for IN cord-001734-bbeznd3r 278 23 the the DT cord-001734-bbeznd3r 278 24 15 15 CD cord-001734-bbeznd3r 278 25 Nlabeled Nlabeled NNP cord-001734-bbeznd3r 278 26 NS3pro NS3pro NNP cord-001734-bbeznd3r 278 27 in in IN cord-001734-bbeznd3r 278 28 complex complex NN cord-001734-bbeznd3r 278 29 with with IN cord-001734-bbeznd3r 278 30 NS2B NS2B NNP cord-001734-bbeznd3r 278 31 ( ( -LRB- cord-001734-bbeznd3r 278 32 48 48 CD cord-001734-bbeznd3r 278 33 - - SYM cord-001734-bbeznd3r 278 34 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 278 35 - - SYM cord-001734-bbeznd3r 278 36 84 84 CD cord-001734-bbeznd3r 278 37 ) ) -RRB- cord-001734-bbeznd3r 278 38 ( ( -LRB- cord-001734-bbeznd3r 278 39 Fig Fig NNP cord-001734-bbeznd3r 278 40 8B 8b NN cord-001734-bbeznd3r 278 41 ) ) -RRB- cord-001734-bbeznd3r 278 42 . . . cord-001734-bbeznd3r 279 1 Furthermore furthermore RB cord-001734-bbeznd3r 279 2 , , , cord-001734-bbeznd3r 279 3 a a DT cord-001734-bbeznd3r 279 4 large large JJ cord-001734-bbeznd3r 279 5 portion portion NN cord-001734-bbeznd3r 279 6 of of IN cord-001734-bbeznd3r 279 7 detectable detectable JJ cord-001734-bbeznd3r 279 8 HSQC HSQC NNP cord-001734-bbeznd3r 279 9 peaks peak NNS cord-001734-bbeznd3r 279 10 are be VBP cord-001734-bbeznd3r 279 11 superimposable superimposable JJ cord-001734-bbeznd3r 279 12 to to IN cord-001734-bbeznd3r 279 13 those those DT cord-001734-bbeznd3r 279 14 of of IN cord-001734-bbeznd3r 279 15 the the DT cord-001734-bbeznd3r 279 16 NS2B NS2B NNP cord-001734-bbeznd3r 279 17 ( ( -LRB- cord-001734-bbeznd3r 279 18 48 48 CD cord-001734-bbeznd3r 279 19 - - SYM cord-001734-bbeznd3r 279 20 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 279 21 complex complex NN cord-001734-bbeznd3r 279 22 ( ( -LRB- cord-001734-bbeznd3r 279 23 Fig Fig NNP cord-001734-bbeznd3r 279 24 8B 8b NN cord-001734-bbeznd3r 279 25 ) ) -RRB- cord-001734-bbeznd3r 279 26 , , , cord-001734-bbeznd3r 279 27 implying imply VBG cord-001734-bbeznd3r 279 28 that that IN cord-001734-bbeznd3r 279 29 some some DT cord-001734-bbeznd3r 279 30 residues residue NNS cord-001734-bbeznd3r 279 31 of of IN cord-001734-bbeznd3r 279 32 the the DT cord-001734-bbeznd3r 279 33 NS2B NS2B NNP cord-001734-bbeznd3r 279 34 ( ( -LRB- cord-001734-bbeznd3r 279 35 48 48 CD cord-001734-bbeznd3r 279 36 - - SYM cord-001734-bbeznd3r 279 37 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 279 38 - - HYPH cord-001734-bbeznd3r 279 39 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 279 40 complex complex NN cord-001734-bbeznd3r 279 41 have have VBP cord-001734-bbeznd3r 279 42 conformations conformation NNS cord-001734-bbeznd3r 279 43 similar similar JJ cord-001734-bbeznd3r 279 44 to to IN cord-001734-bbeznd3r 279 45 those those DT cord-001734-bbeznd3r 279 46 of of IN cord-001734-bbeznd3r 279 47 the the DT cord-001734-bbeznd3r 279 48 NS2B NS2B NNP cord-001734-bbeznd3r 279 49 ( ( -LRB- cord-001734-bbeznd3r 279 50 48 48 CD cord-001734-bbeznd3r 279 51 - - SYM cord-001734-bbeznd3r 279 52 100)-NS3pro 100)-ns3pro CD cord-001734-bbeznd3r 279 53 complex complex NN cord-001734-bbeznd3r 279 54 . . . cord-001734-bbeznd3r 280 1 However however RB cord-001734-bbeznd3r 280 2 , , , cord-001734-bbeznd3r 280 3 HSQC HSQC NNP cord-001734-bbeznd3r 280 4 peaks peak NNS cord-001734-bbeznd3r 280 5 of of IN cord-001734-bbeznd3r 280 6 the the DT cord-001734-bbeznd3r 280 7 majority majority NN cord-001734-bbeznd3r 280 8 of of IN cord-001734-bbeznd3r 280 9 residues residue NNS cord-001734-bbeznd3r 280 10 were be VBD cord-001734-bbeznd3r 280 11 not not RB cord-001734-bbeznd3r 280 12 detected detect VBN cord-001734-bbeznd3r 280 13 , , , cord-001734-bbeznd3r 280 14 indicating indicate VBG cord-001734-bbeznd3r 280 15 that that IN cord-001734-bbeznd3r 280 16 the the DT cord-001734-bbeznd3r 280 17 NS2B NS2B NNP cord-001734-bbeznd3r 280 18 ( ( -LRB- cord-001734-bbeznd3r 280 19 48 48 CD cord-001734-bbeznd3r 280 20 - - SYM cord-001734-bbeznd3r 280 21 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 280 22 - - HYPH cord-001734-bbeznd3r 280 23 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 280 24 complex complex NN cord-001734-bbeznd3r 280 25 undergoes undergo VBZ cord-001734-bbeznd3r 280 26 conformational conformational JJ cord-001734-bbeznd3r 280 27 exchanges exchange NNS cord-001734-bbeznd3r 280 28 on on IN cord-001734-bbeznd3r 280 29 μs μs NNP cord-001734-bbeznd3r 280 30 - - HYPH cord-001734-bbeznd3r 280 31 ms ms NNP cord-001734-bbeznd3r 280 32 , , , cord-001734-bbeznd3r 280 33 or or CC cord-001734-bbeznd3r 280 34 / / SYM cord-001734-bbeznd3r 280 35 and and CC cord-001734-bbeznd3r 280 36 dynamic dynamic JJ cord-001734-bbeznd3r 280 37 oligomerization oligomerization NN cord-001734-bbeznd3r 280 38 , , , cord-001734-bbeznd3r 280 39 thus thus RB cord-001734-bbeznd3r 280 40 retarding retard VBG cord-001734-bbeznd3r 280 41 further far RBR cord-001734-bbeznd3r 280 42 NMR nmr NN cord-001734-bbeznd3r 280 43 characterization characterization NN cord-001734-bbeznd3r 280 44 of of IN cord-001734-bbeznd3r 280 45 its -PRON- PRP$ cord-001734-bbeznd3r 280 46 high high JJ cord-001734-bbeznd3r 280 47 - - HYPH cord-001734-bbeznd3r 280 48 resolution resolution NN cord-001734-bbeznd3r 280 49 conformation conformation NN cord-001734-bbeznd3r 280 50 . . . cord-001734-bbeznd3r 281 1 Most most RBS cord-001734-bbeznd3r 281 2 strikingly strikingly RB cord-001734-bbeznd3r 281 3 , , , cord-001734-bbeznd3r 281 4 the the DT cord-001734-bbeznd3r 281 5 NS2B NS2B NNP cord-001734-bbeznd3r 281 6 ( ( -LRB- cord-001734-bbeznd3r 281 7 48 48 CD cord-001734-bbeznd3r 281 8 - - SYM cord-001734-bbeznd3r 281 9 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 281 10 - - HYPH cord-001734-bbeznd3r 281 11 84)-NS3pro 84)-ns3pro CD cord-001734-bbeznd3r 281 12 complex complex NN cord-001734-bbeznd3r 281 13 had have VBD cord-001734-bbeznd3r 281 14 no no DT cord-001734-bbeznd3r 281 15 detectable detectable JJ cord-001734-bbeznd3r 281 16 catalytic catalytic JJ cord-001734-bbeznd3r 281 17 activity activity NN cord-001734-bbeznd3r 281 18 even even RB cord-001734-bbeznd3r 281 19 with with IN cord-001734-bbeznd3r 281 20 a a DT cord-001734-bbeznd3r 281 21 concentration concentration NN cord-001734-bbeznd3r 281 22 up up IN cord-001734-bbeznd3r 281 23 to to TO cord-001734-bbeznd3r 281 24 10 10 CD cord-001734-bbeznd3r 281 25 μM μM NNS cord-001734-bbeznd3r 281 26 in in IN cord-001734-bbeznd3r 281 27 buffers buffer NNS cord-001734-bbeznd3r 281 28 at at IN cord-001734-bbeznd3r 281 29 pH pH NNP cord-001734-bbeznd3r 281 30 7.5 7.5 CD cord-001734-bbeznd3r 281 31 , , , cord-001734-bbeznd3r 281 32 suggesting suggest VBG cord-001734-bbeznd3r 281 33 that that IN cord-001734-bbeznd3r 281 34 this this DT cord-001734-bbeznd3r 281 35 complex complex NN cord-001734-bbeznd3r 281 36 is be VBZ cord-001734-bbeznd3r 281 37 trapped trap VBN cord-001734-bbeznd3r 281 38 in in IN cord-001734-bbeznd3r 281 39 a a DT cord-001734-bbeznd3r 281 40 highly highly RB cord-001734-bbeznd3r 281 41 - - HYPH cord-001734-bbeznd3r 281 42 dynamic dynamic JJ cord-001734-bbeznd3r 281 43 and and CC cord-001734-bbeznd3r 281 44 catalytically catalytically RB cord-001734-bbeznd3r 281 45 impotent impotent JJ cord-001734-bbeznd3r 281 46 state state NN cord-001734-bbeznd3r 281 47 . . . cord-001734-bbeznd3r 282 1 As as IN cord-001734-bbeznd3r 282 2 virus virus NN cord-001734-bbeznd3r 282 3 - - HYPH cord-001734-bbeznd3r 282 4 encoded encode VBN cord-001734-bbeznd3r 282 5 proteases protease NNS cord-001734-bbeznd3r 282 6 have have VBP cord-001734-bbeznd3r 282 7 been be VBN cord-001734-bbeznd3r 282 8 shown show VBN cord-001734-bbeznd3r 282 9 to to TO cord-001734-bbeznd3r 282 10 be be VB cord-001734-bbeznd3r 282 11 essential essential JJ cord-001734-bbeznd3r 282 12 for for IN cord-001734-bbeznd3r 282 13 the the DT cord-001734-bbeznd3r 282 14 replication replication NN cord-001734-bbeznd3r 282 15 and and CC cord-001734-bbeznd3r 282 16 infectivity infectivity NN cord-001734-bbeznd3r 282 17 of of IN cord-001734-bbeznd3r 282 18 many many JJ cord-001734-bbeznd3r 282 19 viruses virus NNS cord-001734-bbeznd3r 282 20 , , , cord-001734-bbeznd3r 282 21 consequently consequently RB cord-001734-bbeznd3r 282 22 they -PRON- PRP cord-001734-bbeznd3r 282 23 become become VBP cord-001734-bbeznd3r 282 24 important important JJ cord-001734-bbeznd3r 282 25 targets target NNS cord-001734-bbeznd3r 282 26 for for IN cord-001734-bbeznd3r 282 27 design design NN cord-001734-bbeznd3r 282 28 of of IN cord-001734-bbeznd3r 282 29 anti anti JJ cord-001734-bbeznd3r 282 30 - - JJ cord-001734-bbeznd3r 282 31 viral viral JJ cord-001734-bbeznd3r 282 32 drugs drug NNS cord-001734-bbeznd3r 282 33 [ [ -LRB- cord-001734-bbeznd3r 282 34 42 42 CD cord-001734-bbeznd3r 282 35 , , , cord-001734-bbeznd3r 282 36 43 43 CD cord-001734-bbeznd3r 282 37 ] ] -RRB- cord-001734-bbeznd3r 282 38 . . . cord-001734-bbeznd3r 283 1 Indeed indeed RB cord-001734-bbeznd3r 283 2 , , , cord-001734-bbeznd3r 283 3 drugs drug NNS cord-001734-bbeznd3r 283 4 have have VBP cord-001734-bbeznd3r 283 5 been be VBN cord-001734-bbeznd3r 283 6 successfully successfully RB cord-001734-bbeznd3r 283 7 developed develop VBN cord-001734-bbeznd3r 283 8 to to TO cord-001734-bbeznd3r 283 9 treat treat VB cord-001734-bbeznd3r 283 10 HIV HIV NNP cord-001734-bbeznd3r 283 11 and and CC cord-001734-bbeznd3r 283 12 HCV HCV NNP cord-001734-bbeznd3r 283 13 infections infection NNS cord-001734-bbeznd3r 283 14 by by IN cord-001734-bbeznd3r 283 15 targeting target VBG cord-001734-bbeznd3r 283 16 their -PRON- PRP$ cord-001734-bbeznd3r 283 17 proteases protease NNS cord-001734-bbeznd3r 283 18 [ [ -LRB- cord-001734-bbeznd3r 283 19 44 44 CD cord-001734-bbeznd3r 283 20 , , , cord-001734-bbeznd3r 283 21 45 45 CD cord-001734-bbeznd3r 283 22 ] ] -RRB- cord-001734-bbeznd3r 283 23 . . . cord-001734-bbeznd3r 284 1 The the DT cord-001734-bbeznd3r 284 2 Dengue dengue NN cord-001734-bbeznd3r 284 3 NS3 ns3 RB cord-001734-bbeznd3r 284 4 protease protease NN cord-001734-bbeznd3r 284 5 has have VBZ cord-001734-bbeznd3r 284 6 its -PRON- PRP$ cord-001734-bbeznd3r 284 7 catalytic catalytic JJ cord-001734-bbeznd3r 284 8 machinery machinery NN cord-001734-bbeznd3r 284 9 hosted host VBN cord-001734-bbeznd3r 284 10 by by IN cord-001734-bbeznd3r 284 11 a a DT cord-001734-bbeznd3r 284 12 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 284 13 fold fold NN cord-001734-bbeznd3r 284 14 , , , cord-001734-bbeznd3r 284 15 which which WDT cord-001734-bbeznd3r 284 16 has have VBZ cord-001734-bbeznd3r 284 17 been be VBN cord-001734-bbeznd3r 284 18 extensively extensively RB cord-001734-bbeznd3r 284 19 shared share VBN cord-001734-bbeznd3r 284 20 by by IN cord-001734-bbeznd3r 284 21 a a DT cord-001734-bbeznd3r 284 22 variety variety NN cord-001734-bbeznd3r 284 23 of of IN cord-001734-bbeznd3r 284 24 proteases protease NNS cord-001734-bbeznd3r 284 25 . . . cord-001734-bbeznd3r 285 1 On on IN cord-001734-bbeznd3r 285 2 the the DT cord-001734-bbeznd3r 285 3 other other JJ cord-001734-bbeznd3r 285 4 hand hand NN cord-001734-bbeznd3r 285 5 , , , cord-001734-bbeznd3r 285 6 unlike unlike IN cord-001734-bbeznd3r 285 7 most most JJS cord-001734-bbeznd3r 285 8 other other JJ cord-001734-bbeznd3r 285 9 chymotrypsin chymotrypsin JJ cord-001734-bbeznd3r 285 10 - - HYPH cord-001734-bbeznd3r 285 11 like like JJ cord-001734-bbeznd3r 285 12 proteases protease NNS cord-001734-bbeznd3r 285 13 , , , cord-001734-bbeznd3r 285 14 only only RB cord-001734-bbeznd3r 285 15 flavivirus flavivirus JJ cord-001734-bbeznd3r 285 16 proteases protease NNS cord-001734-bbeznd3r 285 17 including include VBG cord-001734-bbeznd3r 285 18 dengue dengue NN cord-001734-bbeznd3r 285 19 NS3 ns3 RB cord-001734-bbeznd3r 285 20 protease protease NN cord-001734-bbeznd3r 285 21 need need VB cord-001734-bbeznd3r 285 22 an an DT cord-001734-bbeznd3r 285 23 additional additional JJ cord-001734-bbeznd3r 285 24 cofactor cofactor NN cord-001734-bbeznd3r 285 25 NS2B NS2B NNP cord-001734-bbeznd3r 285 26 to to TO cord-001734-bbeznd3r 285 27 form form VB cord-001734-bbeznd3r 285 28 the the DT cord-001734-bbeznd3r 285 29 enzymatically enzymatically RB cord-001734-bbeznd3r 285 30 active active JJ cord-001734-bbeznd3r 285 31 complex complex NN cord-001734-bbeznd3r 285 32 . . . cord-001734-bbeznd3r 286 1 Noticeably noticeably RB cord-001734-bbeznd3r 286 2 , , , cord-001734-bbeznd3r 286 3 even even RB cord-001734-bbeznd3r 286 4 within within IN cord-001734-bbeznd3r 286 5 the the DT cord-001734-bbeznd3r 286 6 flavivirus flavivirus NNP cord-001734-bbeznd3r 286 7 proteases protease NNS cord-001734-bbeznd3r 286 8 , , , cord-001734-bbeznd3r 286 9 the the DT cord-001734-bbeznd3r 286 10 NS2B NS2B NNP cord-001734-bbeznd3r 286 11 cofactors cofactor NNS cord-001734-bbeznd3r 286 12 are be VBP cord-001734-bbeznd3r 286 13 very very RB cord-001734-bbeznd3r 286 14 divergent divergent JJ cord-001734-bbeznd3r 286 15 , , , cord-001734-bbeznd3r 286 16 only only RB cord-001734-bbeznd3r 286 17 with with IN cord-001734-bbeznd3r 286 18 sequence sequence NN cord-001734-bbeznd3r 286 19 identity identity NN cord-001734-bbeznd3r 286 20 of~19 of~19 NNP cord-001734-bbeznd3r 286 21 % % NN cord-001734-bbeznd3r 286 22 among among IN cord-001734-bbeznd3r 286 23 different different JJ cord-001734-bbeznd3r 286 24 members member NNS cord-001734-bbeznd3r 286 25 [ [ -LRB- cord-001734-bbeznd3r 286 26 6 6 CD cord-001734-bbeznd3r 286 27 ] ] -RRB- cord-001734-bbeznd3r 286 28 . . . cord-001734-bbeznd3r 287 1 So so RB cord-001734-bbeznd3r 287 2 the the DT cord-001734-bbeznd3r 287 3 NS2B NS2B NNP cord-001734-bbeznd3r 287 4 - - HYPH cord-001734-bbeznd3r 287 5 NS3pro ns3pro NN cord-001734-bbeznd3r 287 6 interface interface NN cord-001734-bbeznd3r 287 7 may may MD cord-001734-bbeznd3r 287 8 represent represent VB cord-001734-bbeznd3r 287 9 an an DT cord-001734-bbeznd3r 287 10 attractive attractive JJ cord-001734-bbeznd3r 287 11 target target NN cord-001734-bbeznd3r 287 12 for for IN cord-001734-bbeznd3r 287 13 developing develop VBG cord-001734-bbeznd3r 287 14 molecules molecule NNS cord-001734-bbeznd3r 287 15 which which WDT cord-001734-bbeznd3r 287 16 specifically specifically RB cord-001734-bbeznd3r 287 17 inhibit inhibit VBP cord-001734-bbeznd3r 287 18 flavivirus flavivirus JJ cord-001734-bbeznd3r 287 19 proteases protease NNS cord-001734-bbeznd3r 287 20 . . . cord-001734-bbeznd3r 288 1 However however RB cord-001734-bbeznd3r 288 2 , , , cord-001734-bbeznd3r 288 3 due due IN cord-001734-bbeznd3r 288 4 to to IN cord-001734-bbeznd3r 288 5 its -PRON- PRP$ cord-001734-bbeznd3r 288 6 " " `` cord-001734-bbeznd3r 288 7 complete complete JJ cord-001734-bbeznd3r 288 8 insolubility insolubility NN cord-001734-bbeznd3r 288 9 " " '' cord-001734-bbeznd3r 288 10 , , , cord-001734-bbeznd3r 288 11 the the DT cord-001734-bbeznd3r 288 12 isolated isolated JJ cord-001734-bbeznd3r 288 13 NS3pro NS3pro NNP cord-001734-bbeznd3r 288 14 domain domain NN cord-001734-bbeznd3r 288 15 has have VBZ cord-001734-bbeznd3r 288 16 never never RB cord-001734-bbeznd3r 288 17 been be VBN cord-001734-bbeznd3r 288 18 experimentally experimentally RB cord-001734-bbeznd3r 288 19 characterized characterize VBN cord-001734-bbeznd3r 288 20 so so RB cord-001734-bbeznd3r 288 21 far far RB cord-001734-bbeznd3r 288 22 . . . cord-001734-bbeznd3r 289 1 In in IN cord-001734-bbeznd3r 289 2 the the DT cord-001734-bbeznd3r 289 3 present present JJ cord-001734-bbeznd3r 289 4 study study NN cord-001734-bbeznd3r 289 5 , , , cord-001734-bbeznd3r 289 6 as as IN cord-001734-bbeznd3r 289 7 facilitated facilitate VBN cord-001734-bbeznd3r 289 8 by by IN cord-001734-bbeznd3r 289 9 our -PRON- PRP$ cord-001734-bbeznd3r 289 10 discovery discovery NN cord-001734-bbeznd3r 289 11 in in IN cord-001734-bbeznd3r 289 12 2005 2005 CD cord-001734-bbeznd3r 289 13 [ [ -LRB- cord-001734-bbeznd3r 289 14 15 15 CD cord-001734-bbeznd3r 289 15 ] ] -RRB- cord-001734-bbeznd3r 289 16 [ [ -LRB- cord-001734-bbeznd3r 289 17 16 16 CD cord-001734-bbeznd3r 289 18 ] ] -RRB- cord-001734-bbeznd3r 289 19 [ [ -LRB- cord-001734-bbeznd3r 289 20 17 17 CD cord-001734-bbeznd3r 289 21 ] ] -RRB- cord-001734-bbeznd3r 289 22 [ [ -LRB- cord-001734-bbeznd3r 289 23 18 18 CD cord-001734-bbeznd3r 289 24 ] ] -RRB- cord-001734-bbeznd3r 289 25 [ [ -LRB- cord-001734-bbeznd3r 289 26 19 19 CD cord-001734-bbeznd3r 289 27 ] ] -RRB- cord-001734-bbeznd3r 289 28 , , , cord-001734-bbeznd3r 289 29 for for IN cord-001734-bbeznd3r 289 30 the the DT cord-001734-bbeznd3r 289 31 first first JJ cord-001734-bbeznd3r 289 32 time time NN cord-001734-bbeznd3r 289 33 , , , cord-001734-bbeznd3r 289 34 the the DT cord-001734-bbeznd3r 289 35 isolated isolated JJ cord-001734-bbeznd3r 289 36 NS3pro NS3pro NNP cord-001734-bbeznd3r 289 37 domain domain NN cord-001734-bbeznd3r 289 38 has have VBZ cord-001734-bbeznd3r 289 39 been be VBN cord-001734-bbeznd3r 289 40 extensively extensively RB cord-001734-bbeznd3r 289 41 characterized characterize VBN cord-001734-bbeznd3r 289 42 in in IN cord-001734-bbeznd3r 289 43 solution solution NN cord-001734-bbeznd3r 289 44 by by IN cord-001734-bbeznd3r 289 45 CD CD NNP cord-001734-bbeznd3r 289 46 , , , cord-001734-bbeznd3r 289 47 NMR NMR NNP cord-001734-bbeznd3r 289 48 and and CC cord-001734-bbeznd3r 289 49 PRE PRE NNP cord-001734-bbeznd3r 289 50 . . . cord-001734-bbeznd3r 290 1 The the DT cord-001734-bbeznd3r 290 2 results result NNS cord-001734-bbeznd3r 290 3 decipher decipher VBP cord-001734-bbeznd3r 290 4 an an DT cord-001734-bbeznd3r 290 5 unexpected unexpected JJ cord-001734-bbeznd3r 290 6 fact fact NN cord-001734-bbeznd3r 290 7 that that IN cord-001734-bbeznd3r 290 8 despite despite IN cord-001734-bbeznd3r 290 9 owning own VBG cord-001734-bbeznd3r 290 10 a a DT cord-001734-bbeznd3r 290 11 high high JJ cord-001734-bbeznd3r 290 12 - - HYPH cord-001734-bbeznd3r 290 13 complexity complexity NN cord-001734-bbeznd3r 290 14 sequence sequence NN cord-001734-bbeznd3r 290 15 which which WDT cord-001734-bbeznd3r 290 16 is be VBZ cord-001734-bbeznd3r 290 17 very very RB cord-001734-bbeznd3r 290 18 different different JJ cord-001734-bbeznd3r 290 19 from from IN cord-001734-bbeznd3r 290 20 classic classic JJ cord-001734-bbeznd3r 290 21 IUPs iup NNS cord-001734-bbeznd3r 290 22 [ [ -LRB- cord-001734-bbeznd3r 290 23 31 31 CD cord-001734-bbeznd3r 290 24 ] ] -RRB- cord-001734-bbeznd3r 290 25 [ [ -LRB- cord-001734-bbeznd3r 290 26 32 32 CD cord-001734-bbeznd3r 290 27 ] ] -RRB- cord-001734-bbeznd3r 290 28 [ [ -LRB- cord-001734-bbeznd3r 290 29 33 33 CD cord-001734-bbeznd3r 290 30 ] ] -RRB- cord-001734-bbeznd3r 290 31 [ [ -LRB- cord-001734-bbeznd3r 290 32 34 34 CD cord-001734-bbeznd3r 290 33 ] ] -RRB- cord-001734-bbeznd3r 290 34 [ [ -LRB- cord-001734-bbeznd3r 290 35 35 35 CD cord-001734-bbeznd3r 290 36 ] ] -RRB- cord-001734-bbeznd3r 290 37 [ [ -LRB- cord-001734-bbeznd3r 290 38 36 36 CD cord-001734-bbeznd3r 290 39 ] ] -RRB- cord-001734-bbeznd3r 290 40 , , , cord-001734-bbeznd3r 290 41 the the DT cord-001734-bbeznd3r 290 42 NS3pro NS3pro NNP cord-001734-bbeznd3r 290 43 with with IN cord-001734-bbeznd3r 290 44 the the DT cord-001734-bbeznd3r 290 45 native native JJ cord-001734-bbeznd3r 290 46 sequence sequence NN cord-001734-bbeznd3r 290 47 is be VBZ cord-001734-bbeznd3r 290 48 intrinsically intrinsically RB cord-001734-bbeznd3r 290 49 disordered disordered JJ cord-001734-bbeznd3r 290 50 without without IN cord-001734-bbeznd3r 290 51 the the DT cord-001734-bbeznd3r 290 52 NS2B NS2B NNP cord-001734-bbeznd3r 290 53 cofactor cofactor NN cord-001734-bbeznd3r 290 54 , , , cord-001734-bbeznd3r 290 55 with with IN cord-001734-bbeznd3r 290 56 no no DT cord-001734-bbeznd3r 290 57 stable stable JJ cord-001734-bbeznd3r 290 58 secondary secondary JJ cord-001734-bbeznd3r 290 59 structures structure NNS cord-001734-bbeznd3r 290 60 and and CC cord-001734-bbeznd3r 290 61 tight tight JJ cord-001734-bbeznd3r 290 62 tertiary tertiary JJ cord-001734-bbeznd3r 290 63 packing packing NN cord-001734-bbeznd3r 290 64 . . . cord-001734-bbeznd3r 291 1 This this DT cord-001734-bbeznd3r 291 2 indicates indicate VBZ cord-001734-bbeznd3r 291 3 that that IN cord-001734-bbeznd3r 291 4 the the DT cord-001734-bbeznd3r 291 5 isolated isolated JJ cord-001734-bbeznd3r 291 6 NS3pro ns3pro NN cord-001734-bbeznd3r 291 7 becomes become VBZ cord-001734-bbeznd3r 291 8 completely completely RB cord-001734-bbeznd3r 291 9 insoluble insoluble JJ cord-001734-bbeznd3r 291 10 in in IN cord-001734-bbeznd3r 291 11 buffers buffer NNS cord-001734-bbeznd3r 291 12 by by IN cord-001734-bbeznd3r 291 13 following follow VBG cord-001734-bbeznd3r 291 14 the the DT cord-001734-bbeznd3r 291 15 same same JJ cord-001734-bbeznd3r 291 16 mechanism mechanism NN cord-001734-bbeznd3r 291 17 as as IN cord-001734-bbeznd3r 291 18 we -PRON- PRP cord-001734-bbeznd3r 291 19 previously previously RB cord-001734-bbeznd3r 291 20 established establish VBD cord-001734-bbeznd3r 291 21 for for IN cord-001734-bbeznd3r 291 22 other other JJ cord-001734-bbeznd3r 291 23 " " `` cord-001734-bbeznd3r 291 24 completely completely RB cord-001734-bbeznd3r 291 25 insoluble insoluble JJ cord-001734-bbeznd3r 291 26 " " '' cord-001734-bbeznd3r 291 27 proteins protein NNS cord-001734-bbeznd3r 291 28 [ [ -LRB- cord-001734-bbeznd3r 291 29 15 15 CD cord-001734-bbeznd3r 291 30 ] ] -RRB- cord-001734-bbeznd3r 291 31 [ [ -LRB- cord-001734-bbeznd3r 291 32 16 16 CD cord-001734-bbeznd3r 291 33 ] ] -RRB- cord-001734-bbeznd3r 291 34 [ [ -LRB- cord-001734-bbeznd3r 291 35 17 17 CD cord-001734-bbeznd3r 291 36 ] ] -RRB- cord-001734-bbeznd3r 291 37 [ [ -LRB- cord-001734-bbeznd3r 291 38 18 18 CD cord-001734-bbeznd3r 291 39 ] ] -RRB- cord-001734-bbeznd3r 291 40 [ [ -LRB- cord-001734-bbeznd3r 291 41 19 19 CD cord-001734-bbeznd3r 291 42 ] ] -RRB- cord-001734-bbeznd3r 291 43 . . . cord-001734-bbeznd3r 292 1 Nevertheless nevertheless RB cord-001734-bbeznd3r 292 2 , , , cord-001734-bbeznd3r 292 3 in in IN cord-001734-bbeznd3r 292 4 the the DT cord-001734-bbeznd3r 292 5 presence presence NN cord-001734-bbeznd3r 292 6 of of IN cord-001734-bbeznd3r 292 7 the the DT cord-001734-bbeznd3r 292 8 NS2B NS2B NNP cord-001734-bbeznd3r 292 9 cofactor cofactor NN cord-001734-bbeznd3r 292 10 , , , cord-001734-bbeznd3r 292 11 the the DT cord-001734-bbeznd3r 292 12 disordered disordered JJ cord-001734-bbeznd3r 292 13 NS3pro ns3pro NN cord-001734-bbeznd3r 292 14 domain domain NN cord-001734-bbeznd3r 292 15 folds fold VBZ cord-001734-bbeznd3r 292 16 into into IN cord-001734-bbeznd3r 292 17 the the DT cord-001734-bbeznd3r 292 18 well well RB cord-001734-bbeznd3r 292 19 - - HYPH cord-001734-bbeznd3r 292 20 structured structure VBN cord-001734-bbeznd3r 292 21 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 292 22 - - HYPH cord-001734-bbeznd3r 292 23 like like IN cord-001734-bbeznd3r 292 24 fold fold NN cord-001734-bbeznd3r 292 25 hosting host VBG cord-001734-bbeznd3r 292 26 the the DT cord-001734-bbeznd3r 292 27 active active JJ cord-001734-bbeznd3r 292 28 catalytic catalytic JJ cord-001734-bbeznd3r 292 29 machinery machinery NN cord-001734-bbeznd3r 292 30 by by IN cord-001734-bbeznd3r 292 31 the the DT cord-001734-bbeznd3r 292 32 " " `` cord-001734-bbeznd3r 292 33 binding bind VBG cord-001734-bbeznd3r 292 34 - - HYPH cord-001734-bbeznd3r 292 35 coupled coupled JJ cord-001734-bbeznd3r 292 36 folding folding NN cord-001734-bbeznd3r 292 37 " " '' cord-001734-bbeznd3r 292 38 mechanism mechanism NN cord-001734-bbeznd3r 292 39 [ [ -LRB- cord-001734-bbeznd3r 292 40 32 32 CD cord-001734-bbeznd3r 292 41 ] ] -RRB- cord-001734-bbeznd3r 293 1 [ [ -LRB- cord-001734-bbeznd3r 293 2 33 33 CD cord-001734-bbeznd3r 293 3 ] ] -RRB- cord-001734-bbeznd3r 294 1 [ [ -LRB- cord-001734-bbeznd3r 294 2 34 34 CD cord-001734-bbeznd3r 294 3 ] ] -RRB- cord-001734-bbeznd3r 294 4 [ [ -LRB- cord-001734-bbeznd3r 294 5 35 35 CD cord-001734-bbeznd3r 294 6 ] ] -RRB- cord-001734-bbeznd3r 294 7 [ [ -LRB- cord-001734-bbeznd3r 294 8 36 36 CD cord-001734-bbeznd3r 294 9 ] ] -RRB- cord-001734-bbeznd3r 294 10 . . . cord-001734-bbeznd3r 295 1 Previously previously RB cord-001734-bbeznd3r 295 2 , , , cord-001734-bbeznd3r 295 3 the the DT cord-001734-bbeznd3r 295 4 chymotrypsin chymotrypsin NNP cord-001734-bbeznd3r 295 5 fold fold NNP cord-001734-bbeznd3r 295 6 has have VBZ cord-001734-bbeznd3r 295 7 been be VBN cord-001734-bbeznd3r 295 8 found find VBN cord-001734-bbeznd3r 295 9 to to TO cord-001734-bbeznd3r 295 10 be be VB cord-001734-bbeznd3r 295 11 an an DT cord-001734-bbeznd3r 295 12 autonomous autonomous JJ cord-001734-bbeznd3r 295 13 folding folding NN cord-001734-bbeznd3r 295 14 unit unit NN cord-001734-bbeznd3r 295 15 even even RB cord-001734-bbeznd3r 295 16 in in IN cord-001734-bbeznd3r 295 17 the the DT cord-001734-bbeznd3r 295 18 context context NN cord-001734-bbeznd3r 295 19 of of IN cord-001734-bbeznd3r 295 20 the the DT cord-001734-bbeznd3r 295 21 SARS SARS NNP cord-001734-bbeznd3r 296 1 3Clike 3clike JJ cord-001734-bbeznd3r 296 2 protease protease RB cord-001734-bbeznd3r 296 3 with with IN cord-001734-bbeznd3r 296 4 an an DT cord-001734-bbeznd3r 296 5 extra extra JJ cord-001734-bbeznd3r 296 6 domain domain NN cord-001734-bbeznd3r 296 7 [ [ -LRB- cord-001734-bbeznd3r 296 8 46 46 CD cord-001734-bbeznd3r 296 9 ] ] -RRB- cord-001734-bbeznd3r 296 10 . . . cord-001734-bbeznd3r 297 1 Therefore therefore RB cord-001734-bbeznd3r 297 2 , , , cord-001734-bbeznd3r 297 3 to to IN cord-001734-bbeznd3r 297 4 the the DT cord-001734-bbeznd3r 297 5 best good JJS cord-001734-bbeznd3r 297 6 of of IN cord-001734-bbeznd3r 297 7 our -PRON- PRP$ cord-001734-bbeznd3r 297 8 knowledge knowledge NN cord-001734-bbeznd3r 297 9 , , , cord-001734-bbeznd3r 297 10 the the DT cord-001734-bbeznd3r 297 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 297 12 domain domain NN cord-001734-bbeznd3r 297 13 represents represent VBZ cord-001734-bbeznd3r 297 14 the the DT cord-001734-bbeznd3r 297 15 first first JJ cord-001734-bbeznd3r 297 16 intrinsically intrinsically RB cord-001734-bbeznd3r 297 17 - - HYPH cord-001734-bbeznd3r 297 18 disordered disordered JJ cord-001734-bbeznd3r 297 19 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 297 20 - - HYPH cord-001734-bbeznd3r 297 21 like like JJ cord-001734-bbeznd3r 297 22 fold fold NN cord-001734-bbeznd3r 297 23 which which WDT cord-001734-bbeznd3r 297 24 absolutely absolutely RB cord-001734-bbeznd3r 297 25 requests request VBZ cord-001734-bbeznd3r 297 26 the the DT cord-001734-bbeznd3r 297 27 additional additional JJ cord-001734-bbeznd3r 297 28 cofactor cofactor NN cord-001734-bbeznd3r 297 29 to to TO cord-001734-bbeznd3r 297 30 achieve achieve VB cord-001734-bbeznd3r 297 31 its -PRON- PRP$ cord-001734-bbeznd3r 297 32 correct correct JJ cord-001734-bbeznd3r 297 33 folding folding NN cord-001734-bbeznd3r 297 34 . . . cord-001734-bbeznd3r 298 1 So so RB cord-001734-bbeznd3r 298 2 an an DT cord-001734-bbeznd3r 298 3 interesting interesting JJ cord-001734-bbeznd3r 298 4 question question NN cord-001734-bbeznd3r 298 5 is be VBZ cord-001734-bbeznd3r 298 6 whether whether IN cord-001734-bbeznd3r 298 7 being be VBG cord-001734-bbeznd3r 298 8 intrinsically intrinsically RB cord-001734-bbeznd3r 298 9 disordered disordered JJ cord-001734-bbeznd3r 298 10 for for IN cord-001734-bbeznd3r 298 11 the the DT cord-001734-bbeznd3r 298 12 isolated isolate VBN cord-001734-bbeznd3r 298 13 NS3pro NS3pro NNP cord-001734-bbeznd3r 298 14 bears bear VBZ cord-001734-bbeznd3r 298 15 any any DT cord-001734-bbeznd3r 298 16 in in IN cord-001734-bbeznd3r 298 17 vivo vivo NN cord-001734-bbeznd3r 298 18 relevance relevance NN cord-001734-bbeznd3r 298 19 ? ? . cord-001734-bbeznd3r 299 1 Interestingly interestingly RB cord-001734-bbeznd3r 299 2 , , , cord-001734-bbeznd3r 299 3 a a DT cord-001734-bbeznd3r 299 4 recent recent JJ cord-001734-bbeznd3r 299 5 study study NN cord-001734-bbeznd3r 299 6 has have VBZ cord-001734-bbeznd3r 299 7 revealed reveal VBN cord-001734-bbeznd3r 299 8 that that IN cord-001734-bbeznd3r 299 9 the the DT cord-001734-bbeznd3r 299 10 dengue dengue NN cord-001734-bbeznd3r 299 11 NS3pro ns3pro NN cord-001734-bbeznd3r 299 12 domain domain NN cord-001734-bbeznd3r 299 13 without without IN cord-001734-bbeznd3r 299 14 NS2B NS2B NNP cord-001734-bbeznd3r 299 15 was be VBD cord-001734-bbeznd3r 299 16 capable capable JJ cord-001734-bbeznd3r 299 17 of of IN cord-001734-bbeznd3r 299 18 binding bind VBG cord-001734-bbeznd3r 299 19 human human JJ cord-001734-bbeznd3r 299 20 fatty fatty JJ cord-001734-bbeznd3r 299 21 acid acid NN cord-001734-bbeznd3r 299 22 synthase synthase NN cord-001734-bbeznd3r 299 23 ( ( -LRB- cord-001734-bbeznd3r 299 24 FASN FASN NNP cord-001734-bbeznd3r 299 25 ) ) -RRB- cord-001734-bbeznd3r 299 26 to to TO cord-001734-bbeznd3r 299 27 trigger trigger VB cord-001734-bbeznd3r 299 28 the the DT cord-001734-bbeznd3r 299 29 membrane membrane NN cord-001734-bbeznd3r 299 30 remodelling remodelle VBG cord-001734-bbeznd3r 299 31 [ [ -LRB- cord-001734-bbeznd3r 299 32 47 47 CD cord-001734-bbeznd3r 299 33 ] ] -RRB- cord-001734-bbeznd3r 299 34 . . . cord-001734-bbeznd3r 300 1 As as IN cord-001734-bbeznd3r 300 2 such such JJ cord-001734-bbeznd3r 300 3 , , , cord-001734-bbeznd3r 300 4 our -PRON- PRP$ cord-001734-bbeznd3r 300 5 biophysical biophysical JJ cord-001734-bbeznd3r 300 6 results result NNS cord-001734-bbeznd3r 300 7 imply imply VBP cord-001734-bbeznd3r 300 8 that that IN cord-001734-bbeznd3r 300 9 this this DT cord-001734-bbeznd3r 300 10 interaction interaction NN cord-001734-bbeznd3r 300 11 needs need VBZ cord-001734-bbeznd3r 300 12 the the DT cord-001734-bbeznd3r 300 13 dengue dengue NN cord-001734-bbeznd3r 300 14 NS3pro ns3pro VBP cord-001734-bbeznd3r 300 15 to to TO cord-001734-bbeznd3r 300 16 be be VB cord-001734-bbeznd3r 300 17 largely largely RB cord-001734-bbeznd3r 300 18 disordered disordered JJ cord-001734-bbeznd3r 300 19 . . . cord-001734-bbeznd3r 301 1 Indeed indeed RB cord-001734-bbeznd3r 301 2 , , , cord-001734-bbeznd3r 301 3 we -PRON- PRP cord-001734-bbeznd3r 301 4 found find VBD cord-001734-bbeznd3r 301 5 that that IN cord-001734-bbeznd3r 301 6 the the DT cord-001734-bbeznd3r 301 7 well well RB cord-001734-bbeznd3r 301 8 - - HYPH cord-001734-bbeznd3r 301 9 folded fold VBN cord-001734-bbeznd3r 301 10 NS2B NS2B NNP cord-001734-bbeznd3r 301 11 - - HYPH cord-001734-bbeznd3r 301 12 NS3pro NS3pro NNP cord-001734-bbeznd3r 301 13 complex complex NN cord-001734-bbeznd3r 301 14 only only RB cord-001734-bbeznd3r 301 15 had have VBD cord-001734-bbeznd3r 301 16 weak weak JJ cord-001734-bbeznd3r 301 17 binding binding NN cord-001734-bbeznd3r 301 18 to to IN cord-001734-bbeznd3r 301 19 the the DT cord-001734-bbeznd3r 301 20 FASN FASN NNP cord-001734-bbeznd3r 301 21 domain domain NN cord-001734-bbeznd3r 301 22 . . . cord-001734-bbeznd3r 302 1 Furthermore furthermore RB cord-001734-bbeznd3r 302 2 , , , cord-001734-bbeznd3r 302 3 DENV DENV NNP cord-001734-bbeznd3r 302 4 and and CC cord-001734-bbeznd3r 302 5 other other JJ cord-001734-bbeznd3r 302 6 members member NNS cord-001734-bbeznd3r 302 7 of of IN cord-001734-bbeznd3r 302 8 the the DT cord-001734-bbeznd3r 302 9 Flaviviridae Flaviviridae NNP cord-001734-bbeznd3r 302 10 family family NN cord-001734-bbeznd3r 302 11 are be VBP cord-001734-bbeznd3r 302 12 dependent dependent JJ cord-001734-bbeznd3r 302 13 on on IN cord-001734-bbeznd3r 302 14 the the DT cord-001734-bbeznd3r 302 15 host host NN cord-001734-bbeznd3r 302 16 ER er NN cord-001734-bbeznd3r 302 17 to to TO cord-001734-bbeznd3r 302 18 translate translate VB cord-001734-bbeznd3r 302 19 , , , cord-001734-bbeznd3r 302 20 replicate replicate VB cord-001734-bbeznd3r 302 21 and and CC cord-001734-bbeznd3r 302 22 package package VB cord-001734-bbeznd3r 302 23 their -PRON- PRP$ cord-001734-bbeznd3r 302 24 genome genome NN cord-001734-bbeznd3r 302 25 , , , cord-001734-bbeznd3r 302 26 and and CC cord-001734-bbeznd3r 302 27 their -PRON- PRP$ cord-001734-bbeznd3r 302 28 infection infection NN cord-001734-bbeznd3r 302 29 has have VBZ cord-001734-bbeznd3r 302 30 been be VBN cord-001734-bbeznd3r 302 31 found find VBN cord-001734-bbeznd3r 302 32 to to TO cord-001734-bbeznd3r 302 33 induce induce VB cord-001734-bbeznd3r 302 34 significant significant JJ cord-001734-bbeznd3r 302 35 rearrangements rearrangement NNS cord-001734-bbeznd3r 302 36 of of IN cord-001734-bbeznd3r 302 37 intracellular intracellular JJ cord-001734-bbeznd3r 302 38 membranes membrane NNS cord-001734-bbeznd3r 302 39 [ [ -LRB- cord-001734-bbeznd3r 302 40 47 47 CD cord-001734-bbeznd3r 302 41 ] ] -RRB- cord-001734-bbeznd3r 303 1 [ [ -LRB- cord-001734-bbeznd3r 303 2 48 48 CD cord-001734-bbeznd3r 303 3 ] ] -RRB- cord-001734-bbeznd3r 304 1 [ [ -LRB- cord-001734-bbeznd3r 304 2 49 49 CD cord-001734-bbeznd3r 304 3 ] ] -RRB- cord-001734-bbeznd3r 304 4 [ [ -LRB- cord-001734-bbeznd3r 304 5 50 50 CD cord-001734-bbeznd3r 304 6 ] ] -RRB- cord-001734-bbeznd3r 304 7 . . . cord-001734-bbeznd3r 305 1 In in IN cord-001734-bbeznd3r 305 2 particular particular JJ cord-001734-bbeznd3r 305 3 it -PRON- PRP cord-001734-bbeznd3r 305 4 has have VBZ cord-001734-bbeznd3r 305 5 been be VBN cord-001734-bbeznd3r 305 6 recently recently RB cord-001734-bbeznd3r 305 7 revealed reveal VBN cord-001734-bbeznd3r 305 8 that that IN cord-001734-bbeznd3r 305 9 the the DT cord-001734-bbeznd3r 305 10 rearrangement rearrangement NN cord-001734-bbeznd3r 305 11 and and CC cord-001734-bbeznd3r 305 12 expansion expansion NN cord-001734-bbeznd3r 305 13 of of IN cord-001734-bbeznd3r 305 14 the the DT cord-001734-bbeznd3r 305 15 ER ER NNP cord-001734-bbeznd3r 305 16 appear appear VBP cord-001734-bbeznd3r 305 17 to to TO cord-001734-bbeznd3r 305 18 be be VB cord-001734-bbeznd3r 305 19 driven drive VBN cord-001734-bbeznd3r 305 20 by by IN cord-001734-bbeznd3r 305 21 viral viral JJ cord-001734-bbeznd3r 305 22 but but CC cord-001734-bbeznd3r 305 23 not not RB cord-001734-bbeznd3r 305 24 host host VB cord-001734-bbeznd3r 305 25 protein protein NN cord-001734-bbeznd3r 305 26 synthesis synthesis NN cord-001734-bbeznd3r 305 27 early early RB cord-001734-bbeznd3r 305 28 after after IN cord-001734-bbeznd3r 305 29 DENV DENV NNP cord-001734-bbeznd3r 305 30 infection infection NN cord-001734-bbeznd3r 305 31 , , , cord-001734-bbeznd3r 305 32 independently independently RB cord-001734-bbeznd3r 305 33 of of IN cord-001734-bbeznd3r 305 34 the the DT cord-001734-bbeznd3r 305 35 UPR UPR NNP cord-001734-bbeznd3r 305 36 or or CC cord-001734-bbeznd3r 305 37 SREBP2 SREBP2 NNP cord-001734-bbeznd3r 305 38 pathways pathway NNS cord-001734-bbeznd3r 305 39 [ [ -LRB- cord-001734-bbeznd3r 305 40 50 50 CD cord-001734-bbeznd3r 305 41 ] ] -RRB- cord-001734-bbeznd3r 305 42 . . . cord-001734-bbeznd3r 306 1 Therefore therefore RB cord-001734-bbeznd3r 306 2 , , , cord-001734-bbeznd3r 306 3 on on IN cord-001734-bbeznd3r 306 4 a a DT cord-001734-bbeznd3r 306 5 speculative speculative JJ cord-001734-bbeznd3r 306 6 note note NN cord-001734-bbeznd3r 306 7 , , , cord-001734-bbeznd3r 306 8 we -PRON- PRP cord-001734-bbeznd3r 306 9 propose propose VBP cord-001734-bbeznd3r 306 10 that that IN cord-001734-bbeznd3r 306 11 the the DT cord-001734-bbeznd3r 306 12 highly highly RB cord-001734-bbeznd3r 306 13 disordered disordered JJ cord-001734-bbeznd3r 306 14 NS3pro ns3pro NN cord-001734-bbeznd3r 306 15 itself -PRON- PRP cord-001734-bbeznd3r 306 16 might may MD cord-001734-bbeznd3r 306 17 also also RB cord-001734-bbeznd3r 306 18 play play VB cord-001734-bbeznd3r 306 19 a a DT cord-001734-bbeznd3r 306 20 role role NN cord-001734-bbeznd3r 306 21 in in IN cord-001734-bbeznd3r 306 22 triggering trigger VBG cord-001734-bbeznd3r 306 23 the the DT cord-001734-bbeznd3r 306 24 early early JJ cord-001734-bbeznd3r 306 25 rearrangement rearrangement NN cord-001734-bbeznd3r 306 26 of of IN cord-001734-bbeznd3r 306 27 the the DT cord-001734-bbeznd3r 306 28 ER ER NNP cord-001734-bbeznd3r 306 29 before before IN cord-001734-bbeznd3r 306 30 activating activate VBG cord-001734-bbeznd3r 306 31 specific specific JJ cord-001734-bbeznd3r 306 32 pathways pathway NNS cord-001734-bbeznd3r 306 33 [ [ -LRB- cord-001734-bbeznd3r 306 34 50 50 CD cord-001734-bbeznd3r 306 35 ] ] -RRB- cord-001734-bbeznd3r 306 36 . . . cord-001734-bbeznd3r 307 1 Previously previously RB cord-001734-bbeznd3r 307 2 , , , cord-001734-bbeznd3r 307 3 we -PRON- PRP cord-001734-bbeznd3r 307 4 have have VBP cord-001734-bbeznd3r 307 5 shown show VBN cord-001734-bbeznd3r 307 6 that that IN cord-001734-bbeznd3r 307 7 the the DT cord-001734-bbeznd3r 307 8 ALS als NN cord-001734-bbeznd3r 307 9 - - HYPH cord-001734-bbeznd3r 307 10 causing cause VBG cord-001734-bbeznd3r 307 11 P56S P56S NNP cord-001734-bbeznd3r 307 12 mutation mutation NN cord-001734-bbeznd3r 307 13 of of IN cord-001734-bbeznd3r 307 14 the the DT cord-001734-bbeznd3r 307 15 ER ER NNP cord-001734-bbeznd3r 307 16 - - HYPH cord-001734-bbeznd3r 307 17 anchored anchor VBN cord-001734-bbeznd3r 307 18 VAPB VAPB NNP cord-001734-bbeznd3r 307 19 protein protein NN cord-001734-bbeznd3r 307 20 rendered render VBD cord-001734-bbeznd3r 307 21 the the DT cord-001734-bbeznd3r 307 22 well well RB cord-001734-bbeznd3r 307 23 - - HYPH cord-001734-bbeznd3r 307 24 structured structure VBN cord-001734-bbeznd3r 307 25 β β NN cord-001734-bbeznd3r 307 26 - - HYPH cord-001734-bbeznd3r 307 27 barrel barrel NN cord-001734-bbeznd3r 307 28 fold fold NN cord-001734-bbeznd3r 307 29 of of IN cord-001734-bbeznd3r 307 30 its -PRON- PRP$ cord-001734-bbeznd3r 307 31 MSP MSP NNP cord-001734-bbeznd3r 307 32 domain domain NN cord-001734-bbeznd3r 307 33 to to TO cord-001734-bbeznd3r 307 34 be be VB cord-001734-bbeznd3r 307 35 highly highly RB cord-001734-bbeznd3r 307 36 disordered disordered JJ cord-001734-bbeznd3r 307 37 and and CC cord-001734-bbeznd3r 307 38 also also RB cord-001734-bbeznd3r 307 39 become become VB cord-001734-bbeznd3r 307 40 " " `` cord-001734-bbeznd3r 307 41 completely completely RB cord-001734-bbeznd3r 307 42 insoluble insoluble JJ cord-001734-bbeznd3r 307 43 " " '' cord-001734-bbeznd3r 307 44 in in IN cord-001734-bbeznd3r 307 45 buffer buffer NN cord-001734-bbeznd3r 307 46 [ [ -LRB- cord-001734-bbeznd3r 307 47 51 51 CD cord-001734-bbeznd3r 307 48 ] ] -RRB- cord-001734-bbeznd3r 307 49 , , , cord-001734-bbeznd3r 307 50 similar similar JJ cord-001734-bbeznd3r 307 51 to to IN cord-001734-bbeznd3r 307 52 what what WP cord-001734-bbeznd3r 307 53 we -PRON- PRP cord-001734-bbeznd3r 307 54 found find VBD cord-001734-bbeznd3r 307 55 here here RB cord-001734-bbeznd3r 307 56 on on IN cord-001734-bbeznd3r 307 57 the the DT cord-001734-bbeznd3r 307 58 isolated isolated JJ cord-001734-bbeznd3r 307 59 NS3pro ns3pro NN cord-001734-bbeznd3r 307 60 . . . cord-001734-bbeznd3r 308 1 Remarkably remarkably RB cord-001734-bbeznd3r 308 2 , , , cord-001734-bbeznd3r 308 3 the the DT cord-001734-bbeznd3r 308 4 P56S p56s NN cord-001734-bbeznd3r 308 5 - - HYPH cord-001734-bbeznd3r 308 6 VAPB VAPB NNP cord-001734-bbeznd3r 308 7 suddenly suddenly RB cord-001734-bbeznd3r 308 8 gained gain VBD cord-001734-bbeznd3r 308 9 the the DT cord-001734-bbeznd3r 308 10 novel novel JJ cord-001734-bbeznd3r 308 11 capacity capacity NN cord-001734-bbeznd3r 308 12 to to TO cord-001734-bbeznd3r 308 13 remodel remodel VB cord-001734-bbeznd3r 308 14 the the DT cord-001734-bbeznd3r 308 15 ER ER NNP cord-001734-bbeznd3r 308 16 structure structure NN cord-001734-bbeznd3r 308 17 which which WDT cord-001734-bbeznd3r 308 18 was be VBD cord-001734-bbeznd3r 308 19 not not RB cord-001734-bbeznd3r 308 20 observed observe VBN cord-001734-bbeznd3r 308 21 for for IN cord-001734-bbeznd3r 308 22 the the DT cord-001734-bbeznd3r 308 23 wild wild JJ cord-001734-bbeznd3r 308 24 - - HYPH cord-001734-bbeznd3r 308 25 type type NN cord-001734-bbeznd3r 308 26 VAPB VAPB NNP cord-001734-bbeznd3r 308 27 [ [ -LRB- cord-001734-bbeznd3r 308 28 52 52 CD cord-001734-bbeznd3r 308 29 ] ] -RRB- cord-001734-bbeznd3r 308 30 . . . cord-001734-bbeznd3r 309 1 Therefore therefore RB cord-001734-bbeznd3r 309 2 , , , cord-001734-bbeznd3r 309 3 the the DT cord-001734-bbeznd3r 309 4 disordered disordered JJ cord-001734-bbeznd3r 309 5 human human JJ cord-001734-bbeznd3r 309 6 P56S p56s NN cord-001734-bbeznd3r 309 7 - - HYPH cord-001734-bbeznd3r 309 8 VAPB vapb NN cord-001734-bbeznd3r 309 9 and and CC cord-001734-bbeznd3r 309 10 dengue dengue NN cord-001734-bbeznd3r 309 11 NS3pro NS3pro NNP cord-001734-bbeznd3r 309 12 may may MD cord-001734-bbeznd3r 309 13 use use VB cord-001734-bbeznd3r 309 14 similar similar JJ cord-001734-bbeznd3r 309 15 mechanisms mechanism NNS cord-001734-bbeznd3r 309 16 to to TO cord-001734-bbeznd3r 309 17 remodel remodel VB cord-001734-bbeznd3r 309 18 the the DT cord-001734-bbeznd3r 309 19 ER ER NNP cord-001734-bbeznd3r 309 20 structure structure NN cord-001734-bbeznd3r 309 21 . . . cord-001734-bbeznd3r 310 1 In in IN cord-001734-bbeznd3r 310 2 fact fact NN cord-001734-bbeznd3r 310 3 , , , cord-001734-bbeznd3r 310 4 the the DT cord-001734-bbeznd3r 310 5 degue degue NN cord-001734-bbeznd3r 310 6 NS3 ns3 RB cord-001734-bbeznd3r 310 7 protein protein NN cord-001734-bbeznd3r 310 8 itself -PRON- PRP cord-001734-bbeznd3r 310 9 is be VBZ cord-001734-bbeznd3r 310 10 also also RB cord-001734-bbeznd3r 310 11 anchored anchor VBN cord-001734-bbeznd3r 310 12 into into IN cord-001734-bbeznd3r 310 13 the the DT cord-001734-bbeznd3r 310 14 ER ER NNP cord-001734-bbeznd3r 310 15 membrane membrane NN cord-001734-bbeznd3r 310 16 before before IN cord-001734-bbeznd3r 310 17 NS3 ns3 RB cord-001734-bbeznd3r 310 18 forms form VBZ cord-001734-bbeznd3r 310 19 the the DT cord-001734-bbeznd3r 310 20 catalytically catalytically RB cord-001734-bbeznd3r 310 21 - - HYPH cord-001734-bbeznd3r 310 22 active active JJ cord-001734-bbeznd3r 310 23 complex complex NN cord-001734-bbeznd3r 310 24 with with IN cord-001734-bbeznd3r 310 25 NS2B NS2B NNP cord-001734-bbeznd3r 310 26 to to TO cord-001734-bbeznd3r 310 27 cleave cleave VB cord-001734-bbeznd3r 310 28 itself -PRON- PRP cord-001734-bbeznd3r 310 29 from from IN cord-001734-bbeznd3r 310 30 the the DT cord-001734-bbeznd3r 310 31 polyprotein polyprotein NN cord-001734-bbeznd3r 310 32 . . . cord-001734-bbeznd3r 311 1 In in IN cord-001734-bbeznd3r 311 2 this this DT cord-001734-bbeznd3r 311 3 study study NN cord-001734-bbeznd3r 311 4 , , , cord-001734-bbeznd3r 311 5 with with IN cord-001734-bbeznd3r 311 6 our -PRON- PRP$ cord-001734-bbeznd3r 311 7 previous previous JJ cord-001734-bbeznd3r 311 8 discovery discovery NN cord-001734-bbeznd3r 311 9 that that IN cord-001734-bbeznd3r 311 10 " " `` cord-001734-bbeznd3r 311 11 insoluble insoluble JJ cord-001734-bbeznd3r 311 12 proteins protein NNS cord-001734-bbeznd3r 311 13 could could MD cord-001734-bbeznd3r 311 14 be be VB cord-001734-bbeznd3r 311 15 solubilized solubilize VBN cord-001734-bbeznd3r 311 16 in in IN cord-001734-bbeznd3r 311 17 water water NN cord-001734-bbeznd3r 311 18 with with IN cord-001734-bbeznd3r 311 19 minimized minimize VBN cord-001734-bbeznd3r 311 20 salt salt NN cord-001734-bbeznd3r 311 21 ions ion NNS cord-001734-bbeznd3r 311 22 , , , cord-001734-bbeznd3r 311 23 we -PRON- PRP cord-001734-bbeznd3r 311 24 also also RB cord-001734-bbeznd3r 311 25 successfully successfully RB cord-001734-bbeznd3r 311 26 refolded refolde VBD cord-001734-bbeznd3r 311 27 the the DT cord-001734-bbeznd3r 311 28 NS3pro NS3pro NNP cord-001734-bbeznd3r 311 29 protease protease NN cord-001734-bbeznd3r 311 30 with with IN cord-001734-bbeznd3r 311 31 the the DT cord-001734-bbeznd3r 311 32 fulllength fulllength NN cord-001734-bbeznd3r 311 33 NS2B NS2B NNP cord-001734-bbeznd3r 311 34 ( ( -LRB- cord-001734-bbeznd3r 311 35 1 1 CD cord-001734-bbeznd3r 311 36 - - SYM cord-001734-bbeznd3r 311 37 130 130 CD cord-001734-bbeznd3r 311 38 ) ) -RRB- cord-001734-bbeznd3r 311 39 anchored anchor VBD cord-001734-bbeznd3r 311 40 into into IN cord-001734-bbeznd3r 311 41 the the DT cord-001734-bbeznd3r 311 42 LMPC LMPC NNP cord-001734-bbeznd3r 311 43 micelle micelle NN cord-001734-bbeznd3r 311 44 . . . cord-001734-bbeznd3r 312 1 Interestingly interestingly RB cord-001734-bbeznd3r 312 2 , , , cord-001734-bbeznd3r 312 3 although although IN cord-001734-bbeznd3r 312 4 NMR NMR NNP cord-001734-bbeznd3r 312 5 characterization characterization NN cord-001734-bbeznd3r 312 6 deciphers decipher VBZ cord-001734-bbeznd3r 312 7 that that IN cord-001734-bbeznd3r 312 8 the the DT cord-001734-bbeznd3r 312 9 NS3pro NS3pro NNP cord-001734-bbeznd3r 312 10 domains domain NNS cord-001734-bbeznd3r 312 11 have have VBP cord-001734-bbeznd3r 312 12 different different JJ cord-001734-bbeznd3r 312 13 dynamics dynamic NNS cord-001734-bbeznd3r 312 14 on on IN cord-001734-bbeznd3r 312 15 the the DT cord-001734-bbeznd3r 312 16 μs μs NNP cord-001734-bbeznd3r 312 17 - - HYPH cord-001734-bbeznd3r 312 18 ms ms NNP cord-001734-bbeznd3r 312 19 time time NN cord-001734-bbeznd3r 312 20 scale scale NN cord-001734-bbeznd3r 312 21 in in IN cord-001734-bbeznd3r 312 22 the the DT cord-001734-bbeznd3r 312 23 contexts contexts NN cord-001734-bbeznd3r 312 24 of of IN cord-001734-bbeznd3r 312 25 being be VBG cord-001734-bbeznd3r 312 26 complexed complexe VBN cord-001734-bbeznd3r 312 27 with with IN cord-001734-bbeznd3r 312 28 NS NS NNP cord-001734-bbeznd3r 312 29 ( ( -LRB- cord-001734-bbeznd3r 312 30 48 48 CD cord-001734-bbeznd3r 312 31 - - SYM cord-001734-bbeznd3r 312 32 100 100 CD cord-001734-bbeznd3r 312 33 ) ) -RRB- cord-001734-bbeznd3r 312 34 in in IN cord-001734-bbeznd3r 312 35 buffer buffer NN cord-001734-bbeznd3r 312 36 and and CC cord-001734-bbeznd3r 312 37 with with IN cord-001734-bbeznd3r 312 38 NS2B NS2B NNP cord-001734-bbeznd3r 312 39 ( ( -LRB- cord-001734-bbeznd3r 312 40 1 1 CD cord-001734-bbeznd3r 312 41 - - SYM cord-001734-bbeznd3r 312 42 130 130 CD cord-001734-bbeznd3r 312 43 ) ) -RRB- cord-001734-bbeznd3r 312 44 in in IN cord-001734-bbeznd3r 312 45 the the DT cord-001734-bbeznd3r 312 46 LMPC LMPC NNP cord-001734-bbeznd3r 312 47 micelle micelle NN cord-001734-bbeznd3r 312 48 , , , cord-001734-bbeznd3r 312 49 they -PRON- PRP cord-001734-bbeznd3r 312 50 have have VBP cord-001734-bbeznd3r 312 51 very very RB cord-001734-bbeznd3r 312 52 similar similar JJ cord-001734-bbeznd3r 312 53 enzymatic enzymatic JJ cord-001734-bbeznd3r 312 54 activities activity NNS cord-001734-bbeznd3r 312 55 . . . cord-001734-bbeznd3r 313 1 This this DT cord-001734-bbeznd3r 313 2 membrane membrane NN cord-001734-bbeznd3r 313 3 - - HYPH cord-001734-bbeznd3r 313 4 anchored anchor VBN cord-001734-bbeznd3r 313 5 complex complex NN cord-001734-bbeznd3r 313 6 may may MD cord-001734-bbeznd3r 313 7 provide provide VB cord-001734-bbeznd3r 313 8 a a DT cord-001734-bbeznd3r 313 9 platform platform NN cord-001734-bbeznd3r 313 10 for for IN cord-001734-bbeznd3r 313 11 screening screen VBG cord-001734-bbeznd3r 313 12 the the DT cord-001734-bbeznd3r 313 13 inhibitors inhibitor NNS cord-001734-bbeznd3r 313 14 for for IN cord-001734-bbeznd3r 313 15 the the DT cord-001734-bbeznd3r 313 16 dengue dengue NN cord-001734-bbeznd3r 313 17 protease protease NN cord-001734-bbeznd3r 313 18 . . . cord-001734-bbeznd3r 314 1 In in IN cord-001734-bbeznd3r 314 2 this this DT cord-001734-bbeznd3r 314 3 regard regard NN cord-001734-bbeznd3r 314 4 , , , cord-001734-bbeznd3r 314 5 despite despite IN cord-001734-bbeznd3r 314 6 challenging challenge VBG cord-001734-bbeznd3r 314 7 , , , cord-001734-bbeznd3r 314 8 it -PRON- PRP cord-001734-bbeznd3r 314 9 is be VBZ cord-001734-bbeznd3r 314 10 of of IN cord-001734-bbeznd3r 314 11 both both CC cord-001734-bbeznd3r 314 12 fundamental fundamental JJ cord-001734-bbeznd3r 314 13 and and CC cord-001734-bbeznd3r 314 14 therapeutic therapeutic JJ cord-001734-bbeznd3r 314 15 interest interest NN cord-001734-bbeznd3r 314 16 in in IN cord-001734-bbeznd3r 314 17 the the DT cord-001734-bbeznd3r 314 18 future future NN cord-001734-bbeznd3r 314 19 to to TO cord-001734-bbeznd3r 314 20 explore explore VB cord-001734-bbeznd3r 314 21 how how WRB cord-001734-bbeznd3r 314 22 the the DT cord-001734-bbeznd3r 314 23 different different JJ cord-001734-bbeznd3r 314 24 structures structure NNS cord-001734-bbeznd3r 314 25 and and CC cord-001734-bbeznd3r 314 26 dynamics dynamic NNS cord-001734-bbeznd3r 314 27 upon upon IN cord-001734-bbeznd3r 314 28 being be VBG cord-001734-bbeznd3r 314 29 anchored anchor VBN cord-001734-bbeznd3r 314 30 into into IN cord-001734-bbeznd3r 314 31 membranes membrane NNS cord-001734-bbeznd3r 314 32 affect affect VBP cord-001734-bbeznd3r 314 33 the the DT cord-001734-bbeznd3r 314 34 affinity affinity NN cord-001734-bbeznd3r 314 35 and and CC cord-001734-bbeznd3r 314 36 specificity specificity NN cord-001734-bbeznd3r 314 37 of of IN cord-001734-bbeznd3r 314 38 the the DT cord-001734-bbeznd3r 314 39 dengue dengue NN cord-001734-bbeznd3r 314 40 NS3pro NS3pro NNP cord-001734-bbeznd3r 314 41 in in IN cord-001734-bbeznd3r 314 42 binding bind VBG cord-001734-bbeznd3r 314 43 substrates substrate NNS cord-001734-bbeznd3r 314 44 and and CC cord-001734-bbeznd3r 314 45 inhibitors inhibitor NNS cord-001734-bbeznd3r 314 46 . . . cord-001734-bbeznd3r 315 1 Further further JJ cord-001734-bbeznd3r 315 2 MD MD NNP cord-001734-bbeznd3r 315 3 simulations simulation NNS cord-001734-bbeznd3r 315 4 provide provide VBP cord-001734-bbeznd3r 315 5 critical critical JJ cord-001734-bbeznd3r 315 6 insights insight NNS cord-001734-bbeznd3r 315 7 into into IN cord-001734-bbeznd3r 315 8 the the DT cord-001734-bbeznd3r 315 9 indispensable indispensable JJ cord-001734-bbeznd3r 315 10 role role NN cord-001734-bbeznd3r 315 11 of of IN cord-001734-bbeznd3r 315 12 the the DT cord-001734-bbeznd3r 315 13 NS2B NS2B NNP cord-001734-bbeznd3r 315 14 cofactor cofactor NN cord-001734-bbeznd3r 315 15 . . . cord-001734-bbeznd3r 316 1 Even even RB cord-001734-bbeznd3r 316 2 within within IN cord-001734-bbeznd3r 316 3 20-ns 20-ns CD cord-001734-bbeznd3r 316 4 simulations simulation NNS cord-001734-bbeznd3r 316 5 , , , cord-001734-bbeznd3r 316 6 the the DT cord-001734-bbeznd3r 316 7 isolated isolated JJ cord-001734-bbeznd3r 316 8 NS3pro NS3pro NNP cord-001734-bbeznd3r 316 9 domain domain NN cord-001734-bbeznd3r 316 10 already already RB cord-001734-bbeznd3r 316 11 showed show VBD cord-001734-bbeznd3r 316 12 higher high JJR cord-001734-bbeznd3r 316 13 dynamic dynamic JJ cord-001734-bbeznd3r 316 14 instability instability NN cord-001734-bbeznd3r 316 15 than than IN cord-001734-bbeznd3r 316 16 the the DT cord-001734-bbeznd3r 316 17 NS3pro NS3pro NNP cord-001734-bbeznd3r 316 18 domain domain NN cord-001734-bbeznd3r 316 19 in in IN cord-001734-bbeznd3r 316 20 the the DT cord-001734-bbeznd3r 316 21 NS2B NS2B NNP cord-001734-bbeznd3r 316 22 - - HYPH cord-001734-bbeznd3r 316 23 NS3pro ns3pro NN cord-001734-bbeznd3r 316 24 complex complex NN cord-001734-bbeznd3r 316 25 ( ( -LRB- cord-001734-bbeznd3r 316 26 Fig Fig NNP cord-001734-bbeznd3r 316 27 5F 5f NN cord-001734-bbeznd3r 316 28 ) ) -RRB- cord-001734-bbeznd3r 316 29 . . . cord-001734-bbeznd3r 317 1 It -PRON- PRP cord-001734-bbeznd3r 317 2 is be VBZ cord-001734-bbeznd3r 317 3 thus thus RB cord-001734-bbeznd3r 317 4 expected expect VBN cord-001734-bbeznd3r 317 5 that that IN cord-001734-bbeznd3r 317 6 on on IN cord-001734-bbeznd3r 317 7 the the DT cord-001734-bbeznd3r 317 8 long long JJ cord-001734-bbeznd3r 317 9 time time NN cord-001734-bbeznd3r 317 10 scale scale NN cord-001734-bbeznd3r 317 11 , , , cord-001734-bbeznd3r 317 12 the the DT cord-001734-bbeznd3r 317 13 isolated isolated JJ cord-001734-bbeznd3r 317 14 NS3pro ns3pro NN cord-001734-bbeznd3r 317 15 would would MD cord-001734-bbeznd3r 317 16 become become VB cord-001734-bbeznd3r 317 17 unfolded unfold VBN cord-001734-bbeznd3r 317 18 as as IN cord-001734-bbeznd3r 317 19 experimentally experimentally RB cord-001734-bbeznd3r 317 20 demonstrated demonstrate VBN cord-001734-bbeznd3r 317 21 here here RB cord-001734-bbeznd3r 317 22 . . . cord-001734-bbeznd3r 318 1 Strikingly strikingly RB cord-001734-bbeznd3r 318 2 , , , cord-001734-bbeznd3r 318 3 the the DT cord-001734-bbeznd3r 318 4 NS2B NS2B NNP cord-001734-bbeznd3r 318 5 residues residue NNS cord-001734-bbeznd3r 318 6 show show VBP cord-001734-bbeznd3r 318 7 much much RB cord-001734-bbeznd3r 318 8 higher high JJR cord-001734-bbeznd3r 318 9 structural structural JJ cord-001734-bbeznd3r 318 10 dynamics dynamic NNS cord-001734-bbeznd3r 318 11 than than IN cord-001734-bbeznd3r 318 12 NS3pro NS3pro NNP cord-001734-bbeznd3r 318 13 even even RB cord-001734-bbeznd3r 318 14 in in IN cord-001734-bbeznd3r 318 15 the the DT cord-001734-bbeznd3r 318 16 complex complex NN cord-001734-bbeznd3r 318 17 , , , cord-001734-bbeznd3r 318 18 suggesting suggest VBG cord-001734-bbeznd3r 318 19 that that IN cord-001734-bbeznd3r 318 20 the the DT cord-001734-bbeznd3r 318 21 cofactor cofactor NN cord-001734-bbeznd3r 318 22 is be VBZ cord-001734-bbeznd3r 318 23 capable capable JJ cord-001734-bbeznd3r 318 24 of of IN cord-001734-bbeznd3r 318 25 sampling sample VBG cord-001734-bbeznd3r 318 26 a a DT cord-001734-bbeznd3r 318 27 large large JJ cord-001734-bbeznd3r 318 28 ensemble ensemble NN cord-001734-bbeznd3r 318 29 of of IN cord-001734-bbeznd3r 318 30 conformations conformation NNS cord-001734-bbeznd3r 318 31 , , , cord-001734-bbeznd3r 318 32 thus thus RB cord-001734-bbeznd3r 318 33 providing provide VBG cord-001734-bbeznd3r 318 34 the the DT cord-001734-bbeznd3r 318 35 dynamic dynamic JJ cord-001734-bbeznd3r 318 36 mechanism mechanism NN cord-001734-bbeznd3r 318 37 for for IN cord-001734-bbeznd3r 318 38 the the DT cord-001734-bbeznd3r 318 39 observed observed JJ cord-001734-bbeznd3r 318 40 conformational conformational JJ cord-001734-bbeznd3r 318 41 exchange exchange NN cord-001734-bbeznd3r 318 42 of of IN cord-001734-bbeznd3r 318 43 NS2B NS2B NNP cord-001734-bbeznd3r 318 44 between between IN cord-001734-bbeznd3r 318 45 open open JJ cord-001734-bbeznd3r 318 46 and and CC cord-001734-bbeznd3r 318 47 closed closed JJ cord-001734-bbeznd3r 318 48 conformations conformation NNS cord-001734-bbeznd3r 318 49 [ [ -LRB- cord-001734-bbeznd3r 318 50 8 8 CD cord-001734-bbeznd3r 318 51 ] ] -RRB- cord-001734-bbeznd3r 319 1 [ [ -LRB- cord-001734-bbeznd3r 319 2 9 9 CD cord-001734-bbeznd3r 319 3 ] ] -RRB- cord-001734-bbeznd3r 319 4 [ [ -LRB- cord-001734-bbeznd3r 319 5 10 10 CD cord-001734-bbeznd3r 319 6 ] ] -RRB- cord-001734-bbeznd3r 319 7 [ [ -LRB- cord-001734-bbeznd3r 319 8 11 11 CD cord-001734-bbeznd3r 319 9 ] ] -RRB- cord-001734-bbeznd3r 319 10 [ [ -LRB- cord-001734-bbeznd3r 319 11 12 12 CD cord-001734-bbeznd3r 319 12 ] ] -RRB- cord-001734-bbeznd3r 319 13 . . . cord-001734-bbeznd3r 320 1 The the DT cord-001734-bbeznd3r 320 2 correlated correlated JJ cord-001734-bbeznd3r 320 3 motions motion NNS cord-001734-bbeznd3r 320 4 in in IN cord-001734-bbeznd3r 320 5 proteins protein NNS cord-001734-bbeznd3r 320 6 have have VBP cord-001734-bbeznd3r 320 7 been be VBN cord-001734-bbeznd3r 320 8 extensively extensively RB cord-001734-bbeznd3r 320 9 recognized recognize VBN cord-001734-bbeznd3r 320 10 to to TO cord-001734-bbeznd3r 320 11 be be VB cord-001734-bbeznd3r 320 12 critical critical JJ cord-001734-bbeznd3r 320 13 for for IN cord-001734-bbeznd3r 320 14 their -PRON- PRP$ cord-001734-bbeznd3r 320 15 diverse diverse JJ cord-001734-bbeznd3r 320 16 functions function NNS cord-001734-bbeznd3r 320 17 [ [ -LRB- cord-001734-bbeznd3r 320 18 20 20 CD cord-001734-bbeznd3r 320 19 , , , cord-001734-bbeznd3r 320 20 21 21 CD cord-001734-bbeznd3r 320 21 , , , cord-001734-bbeznd3r 320 22 30 30 CD cord-001734-bbeznd3r 320 23 , , , cord-001734-bbeznd3r 320 24 53 53 CD cord-001734-bbeznd3r 320 25 ] ] -RRB- cord-001734-bbeznd3r 320 26 . . . cord-001734-bbeznd3r 321 1 In in IN cord-001734-bbeznd3r 321 2 particular particular JJ cord-001734-bbeznd3r 321 3 , , , cord-001734-bbeznd3r 321 4 we -PRON- PRP cord-001734-bbeznd3r 321 5 have have VBP cord-001734-bbeznd3r 321 6 recently recently RB cord-001734-bbeznd3r 321 7 revealed reveal VBN cord-001734-bbeznd3r 321 8 that that IN cord-001734-bbeznd3r 321 9 a a DT cord-001734-bbeznd3r 321 10 global global JJ cord-001734-bbeznd3r 321 11 correlated correlated JJ cord-001734-bbeznd3r 321 12 motion motion NN cord-001734-bbeznd3r 321 13 network network NN cord-001734-bbeznd3r 321 14 was be VBD cord-001734-bbeznd3r 321 15 essential essential JJ cord-001734-bbeznd3r 321 16 for for IN cord-001734-bbeznd3r 321 17 the the DT cord-001734-bbeznd3r 321 18 catalysis catalysis NN cord-001734-bbeznd3r 321 19 of of IN cord-001734-bbeznd3r 321 20 the the DT cord-001734-bbeznd3r 321 21 SARS SARS NNP cord-001734-bbeznd3r 321 22 3C 3C NNP cord-001734-bbeznd3r 321 23 - - HYPH cord-001734-bbeznd3r 321 24 like like JJ cord-001734-bbeznd3r 321 25 protease protease NN cord-001734-bbeznd3r 321 26 [ [ -LRB- cord-001734-bbeznd3r 321 27 20 20 CD cord-001734-bbeznd3r 321 28 , , , cord-001734-bbeznd3r 321 29 21 21 CD cord-001734-bbeznd3r 321 30 ] ] -RRB- cord-001734-bbeznd3r 321 31 , , , cord-001734-bbeznd3r 321 32 which which WDT cord-001734-bbeznd3r 321 33 also also RB cord-001734-bbeznd3r 321 34 utilizes utilize VBZ cord-001734-bbeznd3r 321 35 the the DT cord-001734-bbeznd3r 321 36 chymotrypsin chymotrypsin NNP cord-001734-bbeznd3r 321 37 fold fold VB cord-001734-bbeznd3r 321 38 to to TO cord-001734-bbeznd3r 321 39 harbour harbour VB cord-001734-bbeznd3r 321 40 its -PRON- PRP$ cord-001734-bbeznd3r 321 41 catalytic catalytic JJ cord-001734-bbeznd3r 321 42 machinery machinery NN cord-001734-bbeznd3r 321 43 . . . cord-001734-bbeznd3r 322 1 More more RBR cord-001734-bbeznd3r 322 2 specifically specifically RB cord-001734-bbeznd3r 322 3 , , , cord-001734-bbeznd3r 322 4 without without IN cord-001734-bbeznd3r 322 5 altering alter VBG cord-001734-bbeznd3r 322 6 the the DT cord-001734-bbeznd3r 322 7 three three CD cord-001734-bbeznd3r 322 8 - - HYPH cord-001734-bbeznd3r 322 9 dimensional dimensional JJ cord-001734-bbeznd3r 322 10 structure structure NN cord-001734-bbeznd3r 322 11 of of IN cord-001734-bbeznd3r 322 12 the the DT cord-001734-bbeznd3r 322 13 enzyme enzyme NN cord-001734-bbeznd3r 322 14 , , , cord-001734-bbeznd3r 322 15 the the DT cord-001734-bbeznd3r 322 16 N214A N214A NNP cord-001734-bbeznd3r 322 17 mutation mutation NN cord-001734-bbeznd3r 322 18 on on IN cord-001734-bbeznd3r 322 19 the the DT cord-001734-bbeznd3r 322 20 extra extra JJ cord-001734-bbeznd3r 322 21 domain domain NN cord-001734-bbeznd3r 322 22 is be VBZ cord-001734-bbeznd3r 322 23 sufficient sufficient JJ cord-001734-bbeznd3r 322 24 to to TO cord-001734-bbeznd3r 322 25 inactivate inactivate VB cord-001734-bbeznd3r 322 26 the the DT cord-001734-bbeznd3r 322 27 catalytic catalytic JJ cord-001734-bbeznd3r 322 28 machinery machinery NN cord-001734-bbeznd3r 322 29 by by IN cord-001734-bbeznd3r 322 30 globally globally RB cord-001734-bbeznd3r 322 31 decoupling decouple VBG cord-001734-bbeznd3r 322 32 the the DT cord-001734-bbeznd3r 322 33 correlation correlation NN cord-001734-bbeznd3r 322 34 network network NN cord-001734-bbeznd3r 322 35 , , , cord-001734-bbeznd3r 322 36 while while IN cord-001734-bbeznd3r 322 37 the the DT cord-001734-bbeznd3r 322 38 STI STI NNP cord-001734-bbeznd3r 322 39 / / SYM cord-001734-bbeznd3r 322 40 A A NNP cord-001734-bbeznd3r 322 41 mutations mutation NNS cord-001734-bbeznd3r 322 42 also also RB cord-001734-bbeznd3r 322 43 on on IN cord-001734-bbeznd3r 322 44 the the DT cord-001734-bbeznd3r 322 45 extra extra JJ cord-001734-bbeznd3r 322 46 domain domain NN cord-001734-bbeznd3r 322 47 enhance enhance VBP cord-001734-bbeznd3r 322 48 the the DT cord-001734-bbeznd3r 322 49 catalytic catalytic JJ cord-001734-bbeznd3r 322 50 machinery machinery NN cord-001734-bbeznd3r 322 51 by by IN cord-001734-bbeznd3r 322 52 altering alter VBG cord-001734-bbeznd3r 322 53 the the DT cord-001734-bbeznd3r 322 54 correlation correlation NN cord-001734-bbeznd3r 322 55 network network NN cord-001734-bbeznd3r 322 56 pattern pattern NN cord-001734-bbeznd3r 322 57 [ [ -LRB- cord-001734-bbeznd3r 322 58 20 20 CD cord-001734-bbeznd3r 322 59 , , , cord-001734-bbeznd3r 322 60 21 21 CD cord-001734-bbeznd3r 322 61 ] ] -RRB- cord-001734-bbeznd3r 322 62 . . . cord-001734-bbeznd3r 323 1 In in IN cord-001734-bbeznd3r 323 2 the the DT cord-001734-bbeznd3r 323 3 present present JJ cord-001734-bbeznd3r 323 4 study study NN cord-001734-bbeznd3r 323 5 , , , cord-001734-bbeznd3r 323 6 a a DT cord-001734-bbeznd3r 323 7 similar similar JJ cord-001734-bbeznd3r 323 8 scenario scenario NN cord-001734-bbeznd3r 323 9 has have VBZ cord-001734-bbeznd3r 323 10 been be VBN cord-001734-bbeznd3r 323 11 observed observe VBN cord-001734-bbeznd3r 323 12 for for IN cord-001734-bbeznd3r 323 13 the the DT cord-001734-bbeznd3r 323 14 dengue dengue NN cord-001734-bbeznd3r 323 15 NS2B NS2B NNP cord-001734-bbeznd3r 323 16 - - HYPH cord-001734-bbeznd3r 323 17 NS3pro NS3pro NNP cord-001734-bbeznd3r 323 18 complex complex NN cord-001734-bbeznd3r 323 19 . . . cord-001734-bbeznd3r 324 1 A a DT cord-001734-bbeznd3r 324 2 global global JJ cord-001734-bbeznd3r 324 3 correlation correlation NN cord-001734-bbeznd3r 324 4 network network NN cord-001734-bbeznd3r 324 5 does do VBZ cord-001734-bbeznd3r 324 6 exist exist VB cord-001734-bbeznd3r 324 7 in in IN cord-001734-bbeznd3r 324 8 the the DT cord-001734-bbeznd3r 324 9 NS2B NS2B NNP cord-001734-bbeznd3r 324 10 - - : cord-001734-bbeznd3r 324 11 NS3 ns3 RB cord-001734-bbeznd3r 324 12 complex complex JJ cord-001734-bbeznd3r 324 13 . . . cord-001734-bbeznd3r 325 1 Most most RBS cord-001734-bbeznd3r 325 2 intriguingly intriguingly RB cord-001734-bbeznd3r 325 3 , , , cord-001734-bbeznd3r 325 4 this this DT cord-001734-bbeznd3r 325 5 global global JJ cord-001734-bbeznd3r 325 6 correlation correlation NN cord-001734-bbeznd3r 325 7 network network NN cord-001734-bbeznd3r 325 8 is be VBZ cord-001734-bbeznd3r 325 9 mostly mostly RB cord-001734-bbeznd3r 325 10 coordinated coordinate VBN cord-001734-bbeznd3r 325 11 by by IN cord-001734-bbeznd3r 325 12 the the DT cord-001734-bbeznd3r 325 13 NS2B NS2B NNP cord-001734-bbeznd3r 325 14 residues residue NNS cord-001734-bbeznd3r 325 15 which which WDT cord-001734-bbeznd3r 325 16 have have VBP cord-001734-bbeznd3r 325 17 very very RB cord-001734-bbeznd3r 325 18 high high JJ cord-001734-bbeznd3r 325 19 structural structural JJ cord-001734-bbeznd3r 325 20 dynamics dynamic NNS cord-001734-bbeznd3r 325 21 . . . cord-001734-bbeznd3r 326 1 As as IN cord-001734-bbeznd3r 326 2 such such JJ cord-001734-bbeznd3r 326 3 , , , cord-001734-bbeznd3r 326 4 the the DT cord-001734-bbeznd3r 326 5 MD MD NNP cord-001734-bbeznd3r 326 6 results result VBZ cord-001734-bbeznd3r 326 7 not not RB cord-001734-bbeznd3r 326 8 only only RB cord-001734-bbeznd3r 326 9 rationalizes rationalize VBZ cord-001734-bbeznd3r 326 10 the the DT cord-001734-bbeznd3r 326 11 central central JJ cord-001734-bbeznd3r 326 12 role role NN cord-001734-bbeznd3r 326 13 of of IN cord-001734-bbeznd3r 326 14 the the DT cord-001734-bbeznd3r 326 15 NS2B NS2B NNP cord-001734-bbeznd3r 326 16 cofactor cofactor NN cord-001734-bbeznd3r 326 17 in in IN cord-001734-bbeznd3r 326 18 maintaining maintain VBG cord-001734-bbeznd3r 326 19 the the DT cord-001734-bbeznd3r 326 20 dynamic dynamic JJ cord-001734-bbeznd3r 326 21 stability stability NN cord-001734-bbeznd3r 326 22 of of IN cord-001734-bbeznd3r 326 23 the the DT cord-001734-bbeznd3r 326 24 NS3pro NS3pro NNP cord-001734-bbeznd3r 326 25 domain domain NN cord-001734-bbeznd3r 326 26 , , , cord-001734-bbeznd3r 326 27 but but CC cord-001734-bbeznd3r 326 28 further further RB cord-001734-bbeznd3r 326 29 implies imply VBZ cord-001734-bbeznd3r 326 30 that that IN cord-001734-bbeznd3r 326 31 a a DT cord-001734-bbeznd3r 326 32 slight slight JJ cord-001734-bbeznd3r 326 33 perturbation perturbation NN cord-001734-bbeznd3r 326 34 of of IN cord-001734-bbeznd3r 326 35 the the DT cord-001734-bbeznd3r 326 36 NS2B NS2B NNP cord-001734-bbeznd3r 326 37 - - HYPH cord-001734-bbeznd3r 326 38 NS3pro ns3pro NN cord-001734-bbeznd3r 326 39 interface interface NN cord-001734-bbeznd3r 326 40 may may MD cord-001734-bbeznd3r 326 41 be be VB cord-001734-bbeznd3r 326 42 sufficient sufficient JJ cord-001734-bbeznd3r 326 43 to to TO cord-001734-bbeznd3r 326 44 decouple decouple VB cord-001734-bbeznd3r 326 45 the the DT cord-001734-bbeznd3r 326 46 correlation correlation NN cord-001734-bbeznd3r 326 47 network network NN cord-001734-bbeznd3r 326 48 to to TO cord-001734-bbeznd3r 326 49 inactive inactive VB cord-001734-bbeznd3r 326 50 the the DT cord-001734-bbeznd3r 326 51 catalytic catalytic JJ cord-001734-bbeznd3r 326 52 machinery machinery NN cord-001734-bbeznd3r 326 53 of of IN cord-001734-bbeznd3r 326 54 the the DT cord-001734-bbeznd3r 326 55 dengue dengue NN cord-001734-bbeznd3r 326 56 NS2B NS2B NNP cord-001734-bbeznd3r 326 57 - - HYPH cord-001734-bbeznd3r 326 58 NS3pro ns3pro NN cord-001734-bbeznd3r 326 59 protease protease NN cord-001734-bbeznd3r 326 60 , , , cord-001734-bbeznd3r 326 61 as as IN cord-001734-bbeznd3r 326 62 we -PRON- PRP cord-001734-bbeznd3r 326 63 found find VBD cord-001734-bbeznd3r 326 64 on on IN cord-001734-bbeznd3r 326 65 the the DT cord-001734-bbeznd3r 326 66 N214A N214A NNP cord-001734-bbeznd3r 326 67 mutation mutation NN cord-001734-bbeznd3r 326 68 of of IN cord-001734-bbeznd3r 326 69 the the DT cord-001734-bbeznd3r 326 70 SARS SARS NNP cord-001734-bbeznd3r 326 71 3Clike 3clike IN cord-001734-bbeznd3r 326 72 protease protease NN cord-001734-bbeznd3r 326 73 [ [ -LRB- cord-001734-bbeznd3r 326 74 20 20 CD cord-001734-bbeznd3r 326 75 , , , cord-001734-bbeznd3r 326 76 21 21 CD cord-001734-bbeznd3r 326 77 ] ] -RRB- cord-001734-bbeznd3r 326 78 . . . cord-001734-bbeznd3r 327 1 Indeed indeed RB cord-001734-bbeznd3r 327 2 , , , cord-001734-bbeznd3r 327 3 by by IN cord-001734-bbeznd3r 327 4 deleting delete VBG cord-001734-bbeznd3r 327 5 the the DT cord-001734-bbeznd3r 327 6 NS2B NS2B NNP cord-001734-bbeznd3r 327 7 residues residue NNS cord-001734-bbeznd3r 327 8 highly highly RB cord-001734-bbeznd3r 327 9 flexible flexible JJ cord-001734-bbeznd3r 327 10 in in IN cord-001734-bbeznd3r 327 11 MD MD NNP cord-001734-bbeznd3r 327 12 simulations simulation NNS cord-001734-bbeznd3r 327 13 , , , cord-001734-bbeznd3r 327 14 we -PRON- PRP cord-001734-bbeznd3r 327 15 obtained obtain VBD cord-001734-bbeznd3r 327 16 a a DT cord-001734-bbeznd3r 327 17 truncated truncated JJ cord-001734-bbeznd3r 327 18 NS2B NS2B NNS cord-001734-bbeznd3r 327 19 ( ( -LRB- cord-001734-bbeznd3r 327 20 48 48 CD cord-001734-bbeznd3r 327 21 - - SYM cord-001734-bbeznd3r 327 22 100;Δ77 100;δ77 CD cord-001734-bbeznd3r 327 23 - - SYM cord-001734-bbeznd3r 327 24 84 84 CD cord-001734-bbeznd3r 327 25 ) ) -RRB- cord-001734-bbeznd3r 327 26 , , , cord-001734-bbeznd3r 327 27 which which WDT cord-001734-bbeznd3r 327 28 is be VBZ cord-001734-bbeznd3r 327 29 able able JJ cord-001734-bbeznd3r 327 30 to to TO cord-001734-bbeznd3r 327 31 trap trap VB cord-001734-bbeznd3r 327 32 the the DT cord-001734-bbeznd3r 327 33 NS2B NS2B NNP cord-001734-bbeznd3r 327 34 - - HYPH cord-001734-bbeznd3r 327 35 NS3pro NS3pro NNP cord-001734-bbeznd3r 327 36 complex complex NN cord-001734-bbeznd3r 327 37 in in IN cord-001734-bbeznd3r 327 38 a a DT cord-001734-bbeznd3r 327 39 catalytically catalytically RB cord-001734-bbeznd3r 327 40 - - HYPH cord-001734-bbeznd3r 327 41 impotent impotent JJ cord-001734-bbeznd3r 327 42 state state NN cord-001734-bbeznd3r 327 43 with with IN cord-001734-bbeznd3r 327 44 significant significant JJ cord-001734-bbeznd3r 327 45 μs μs NNP cord-001734-bbeznd3r 327 46 - - HYPH cord-001734-bbeznd3r 327 47 ms ms NNP cord-001734-bbeznd3r 327 48 dynamics dynamic NNS cord-001734-bbeznd3r 327 49 . . . cord-001734-bbeznd3r 328 1 In in IN cord-001734-bbeznd3r 328 2 the the DT cord-001734-bbeznd3r 328 3 further further JJ cord-001734-bbeznd3r 328 4 , , , cord-001734-bbeznd3r 328 5 it -PRON- PRP cord-001734-bbeznd3r 328 6 would would MD cord-001734-bbeznd3r 328 7 be be VB cord-001734-bbeznd3r 328 8 of of IN cord-001734-bbeznd3r 328 9 significant significant JJ cord-001734-bbeznd3r 328 10 interest interest NN cord-001734-bbeznd3r 328 11 to to TO cord-001734-bbeznd3r 328 12 test test VB cord-001734-bbeznd3r 328 13 whether whether IN cord-001734-bbeznd3r 328 14 this this DT cord-001734-bbeznd3r 328 15 truncated truncated JJ cord-001734-bbeznd3r 328 16 NS2B NS2B NNP cord-001734-bbeznd3r 328 17 can can MD cord-001734-bbeznd3r 328 18 act act VB cord-001734-bbeznd3r 328 19 as as IN cord-001734-bbeznd3r 328 20 a a DT cord-001734-bbeznd3r 328 21 specific specific JJ cord-001734-bbeznd3r 328 22 inhibitor inhibitor NN cord-001734-bbeznd3r 328 23 of of IN cord-001734-bbeznd3r 328 24 the the DT cord-001734-bbeznd3r 328 25 dengue dengue NN cord-001734-bbeznd3r 328 26 protease protease NN cord-001734-bbeznd3r 328 27 in in IN cord-001734-bbeznd3r 328 28 vivo vivo NNP cord-001734-bbeznd3r 328 29 . . . cord-001734-bbeznd3r 329 1 Despite despite IN cord-001734-bbeznd3r 329 2 the the DT cord-001734-bbeznd3r 329 3 success success NN cord-001734-bbeznd3r 329 4 in in IN cord-001734-bbeznd3r 329 5 treating treat VBG cord-001734-bbeznd3r 329 6 viral viral JJ cord-001734-bbeznd3r 329 7 infections infection NNS cord-001734-bbeznd3r 329 8 with with IN cord-001734-bbeznd3r 329 9 inhibitors inhibitor NNS cord-001734-bbeznd3r 329 10 to to TO cord-001734-bbeznd3r 329 11 target target VB cord-001734-bbeznd3r 329 12 the the DT cord-001734-bbeznd3r 329 13 active active JJ cord-001734-bbeznd3r 329 14 sites site NNS cord-001734-bbeznd3r 329 15 of of IN cord-001734-bbeznd3r 329 16 HIV HIV NNP cord-001734-bbeznd3r 329 17 and and CC cord-001734-bbeznd3r 329 18 HCV HCV NNP cord-001734-bbeznd3r 329 19 proteases protease NNS cord-001734-bbeznd3r 329 20 [ [ -LRB- cord-001734-bbeznd3r 329 21 41 41 CD cord-001734-bbeznd3r 329 22 ] ] -RRB- cord-001734-bbeznd3r 329 23 [ [ -LRB- cord-001734-bbeznd3r 329 24 42 42 CD cord-001734-bbeznd3r 329 25 ] ] -RRB- cord-001734-bbeznd3r 329 26 [ [ -LRB- cord-001734-bbeznd3r 329 27 43 43 CD cord-001734-bbeznd3r 329 28 ] ] -RRB- cord-001734-bbeznd3r 329 29 , , , cord-001734-bbeznd3r 329 30 many many JJ cord-001734-bbeznd3r 329 31 challenges challenge NNS cord-001734-bbeznd3r 329 32 / / SYM cord-001734-bbeznd3r 329 33 difficulties difficulty NNS cord-001734-bbeznd3r 329 34 still still RB cord-001734-bbeznd3r 329 35 remain remain VBP cord-001734-bbeznd3r 329 36 for for IN cord-001734-bbeznd3r 329 37 this this DT cord-001734-bbeznd3r 329 38 approach approach NN cord-001734-bbeznd3r 329 39 . . . cord-001734-bbeznd3r 330 1 For for IN cord-001734-bbeznd3r 330 2 example example NN cord-001734-bbeznd3r 330 3 , , , cord-001734-bbeznd3r 330 4 the the DT cord-001734-bbeznd3r 330 5 structural structural JJ cord-001734-bbeznd3r 330 6 architecture architecture NN cord-001734-bbeznd3r 330 7 and and CC cord-001734-bbeznd3r 330 8 catalytic catalytic JJ cord-001734-bbeznd3r 330 9 mechanism mechanism NN cord-001734-bbeznd3r 330 10 of of IN cord-001734-bbeznd3r 330 11 viral viral JJ cord-001734-bbeznd3r 330 12 proteases protease NNS cord-001734-bbeznd3r 330 13 are be VBP cord-001734-bbeznd3r 330 14 also also RB cord-001734-bbeznd3r 330 15 largely largely RB cord-001734-bbeznd3r 330 16 shared share VBN cord-001734-bbeznd3r 330 17 by by IN cord-001734-bbeznd3r 330 18 many many JJ cord-001734-bbeznd3r 330 19 human human JJ cord-001734-bbeznd3r 330 20 proteases protease NNS cord-001734-bbeznd3r 330 21 . . . cord-001734-bbeznd3r 331 1 This this DT cord-001734-bbeznd3r 331 2 makes make VBZ cord-001734-bbeznd3r 331 3 it -PRON- PRP cord-001734-bbeznd3r 331 4 extremely extremely RB cord-001734-bbeznd3r 331 5 challenging challenging JJ cord-001734-bbeznd3r 331 6 to to TO cord-001734-bbeznd3r 331 7 design design NN cord-001734-bbeznd3r 331 8 inhibitors inhibitor NNS cord-001734-bbeznd3r 331 9 which which WDT cord-001734-bbeznd3r 331 10 only only RB cord-001734-bbeznd3r 331 11 specifically specifically RB cord-001734-bbeznd3r 331 12 bind bind VBP cord-001734-bbeznd3r 331 13 to to IN cord-001734-bbeznd3r 331 14 viral viral JJ cord-001734-bbeznd3r 331 15 proteases protease NNS cord-001734-bbeznd3r 331 16 but but CC cord-001734-bbeznd3r 331 17 not not RB cord-001734-bbeznd3r 331 18 to to IN cord-001734-bbeznd3r 331 19 human human JJ cord-001734-bbeznd3r 331 20 ones one NNS cord-001734-bbeznd3r 331 21 . . . cord-001734-bbeznd3r 332 1 Moreover moreover RB cord-001734-bbeznd3r 332 2 , , , cord-001734-bbeznd3r 332 3 there there EX cord-001734-bbeznd3r 332 4 is be VBZ cord-001734-bbeznd3r 332 5 an an DT cord-001734-bbeznd3r 332 6 addition addition NN cord-001734-bbeznd3r 332 7 challenge challenge NN cord-001734-bbeznd3r 332 8 associated associate VBN cord-001734-bbeznd3r 332 9 with with IN cord-001734-bbeznd3r 332 10 the the DT cord-001734-bbeznd3r 332 11 dengue dengue NN cord-001734-bbeznd3r 332 12 NS3pro ns3pro NN cord-001734-bbeznd3r 332 13 protease protease NN cord-001734-bbeznd3r 332 14 . . . cord-001734-bbeznd3r 333 1 It -PRON- PRP cord-001734-bbeznd3r 333 2 has have VBZ cord-001734-bbeznd3r 333 3 been be VBN cord-001734-bbeznd3r 333 4 proposed propose VBN cord-001734-bbeznd3r 333 5 that that IN cord-001734-bbeznd3r 333 6 the the DT cord-001734-bbeznd3r 333 7 flat flat JJ cord-001734-bbeznd3r 333 8 and and CC cord-001734-bbeznd3r 333 9 charged charged JJ cord-001734-bbeznd3r 333 10 nature nature NN cord-001734-bbeznd3r 333 11 of of IN cord-001734-bbeznd3r 333 12 its -PRON- PRP$ cord-001734-bbeznd3r 333 13 active active JJ cord-001734-bbeznd3r 333 14 site site NN cord-001734-bbeznd3r 333 15 may may MD cord-001734-bbeznd3r 333 16 at at IN cord-001734-bbeznd3r 333 17 least least JJS cord-001734-bbeznd3r 333 18 partly partly RB cord-001734-bbeznd3r 333 19 contribute contribute VB cord-001734-bbeznd3r 333 20 to to IN cord-001734-bbeznd3r 333 21 the the DT cord-001734-bbeznd3r 333 22 current current JJ cord-001734-bbeznd3r 333 23 failure failure NN cord-001734-bbeznd3r 333 24 in in IN cord-001734-bbeznd3r 333 25 developing develop VBG cord-001734-bbeznd3r 333 26 effective effective JJ cord-001734-bbeznd3r 333 27 inhibitors inhibitor NNS cord-001734-bbeznd3r 333 28 [ [ -LRB- cord-001734-bbeznd3r 333 29 7 7 CD cord-001734-bbeznd3r 333 30 , , , cord-001734-bbeznd3r 333 31 45 45 CD cord-001734-bbeznd3r 333 32 ] ] -RRB- cord-001734-bbeznd3r 333 33 . . . cord-001734-bbeznd3r 334 1 To to TO cord-001734-bbeznd3r 334 2 overcome overcome VB cord-001734-bbeznd3r 334 3 these these DT cord-001734-bbeznd3r 334 4 difficulties difficulty NNS cord-001734-bbeznd3r 334 5 , , , cord-001734-bbeznd3r 334 6 alternative alternative JJ cord-001734-bbeznd3r 334 7 strategies strategy NNS cord-001734-bbeznd3r 334 8 are be VBP cord-001734-bbeznd3r 334 9 requested request VBN cord-001734-bbeznd3r 334 10 to to IN cord-001734-bbeznd3r 334 11 targets target NNS cord-001734-bbeznd3r 334 12 sites site NNS cord-001734-bbeznd3r 334 13 other other JJ cord-001734-bbeznd3r 334 14 than than IN cord-001734-bbeznd3r 334 15 the the DT cord-001734-bbeznd3r 334 16 active active JJ cord-001734-bbeznd3r 334 17 sites site NNS cord-001734-bbeznd3r 334 18 of of IN cord-001734-bbeznd3r 334 19 the the DT cord-001734-bbeznd3r 334 20 viral viral JJ cord-001734-bbeznd3r 334 21 proteases protease NNS cord-001734-bbeznd3r 334 22 , , , cord-001734-bbeznd3r 334 23 such such JJ cord-001734-bbeznd3r 334 24 as as IN cord-001734-bbeznd3r 334 25 to to TO cord-001734-bbeznd3r 334 26 inhibit inhibit VB cord-001734-bbeznd3r 334 27 the the DT cord-001734-bbeznd3r 334 28 dimerization dimerization NN cord-001734-bbeznd3r 334 29 required require VBN cord-001734-bbeznd3r 334 30 for for IN cord-001734-bbeznd3r 334 31 activity activity NN cord-001734-bbeznd3r 334 32 [ [ -LRB- cord-001734-bbeznd3r 334 33 46 46 CD cord-001734-bbeznd3r 334 34 ] ] -RRB- cord-001734-bbeznd3r 334 35 , , , cord-001734-bbeznd3r 334 36 to to TO cord-001734-bbeznd3r 334 37 trigger trigger VB cord-001734-bbeznd3r 334 38 allosteric allosteric JJ cord-001734-bbeznd3r 334 39 inhibition inhibition NN cord-001734-bbeznd3r 334 40 [ [ -LRB- cord-001734-bbeznd3r 334 41 45 45 CD cord-001734-bbeznd3r 334 42 ] ] -RRB- cord-001734-bbeznd3r 334 43 , , , cord-001734-bbeznd3r 334 44 or or CC cord-001734-bbeznd3r 334 45 even even RB cord-001734-bbeznd3r 334 46 to to TO cord-001734-bbeznd3r 334 47 block block VB cord-001734-bbeznd3r 334 48 the the DT cord-001734-bbeznd3r 334 49 folding folding NN cord-001734-bbeznd3r 334 50 of of IN cord-001734-bbeznd3r 334 51 the the DT cord-001734-bbeznd3r 334 52 protease protease NN cord-001734-bbeznd3r 334 53 [ [ -LRB- cord-001734-bbeznd3r 334 54 54 54 CD cord-001734-bbeznd3r 334 55 ] ] -RRB- cord-001734-bbeznd3r 334 56 . . . cord-001734-bbeznd3r 335 1 In in IN cord-001734-bbeznd3r 335 2 this this DT cord-001734-bbeznd3r 335 3 regard regard NN cord-001734-bbeznd3r 335 4 , , , cord-001734-bbeznd3r 335 5 our -PRON- PRP$ cord-001734-bbeznd3r 335 6 present present JJ cord-001734-bbeznd3r 335 7 study study NN cord-001734-bbeznd3r 335 8 successfully successfully RB cord-001734-bbeznd3r 335 9 implies imply VBZ cord-001734-bbeznd3r 335 10 potential potential JJ cord-001734-bbeznd3r 335 11 strategies strategy NNS cord-001734-bbeznd3r 335 12 to to TO cord-001734-bbeznd3r 335 13 perturb perturb VB cord-001734-bbeznd3r 335 14 the the DT cord-001734-bbeznd3r 335 15 NS2B NS2B NNP cord-001734-bbeznd3r 335 16 - - HYPH cord-001734-bbeznd3r 335 17 NS3pro ns3pro NN cord-001734-bbeznd3r 335 18 interface interface NN cord-001734-bbeznd3r 335 19 for for IN cord-001734-bbeznd3r 335 20 future future JJ cord-001734-bbeznd3r 335 21 developing develop VBG cord-001734-bbeznd3r 335 22 effective effective JJ cord-001734-bbeznd3r 335 23 and and CC cord-001734-bbeznd3r 335 24 specific specific JJ cord-001734-bbeznd3r 335 25 inhibitors inhibitor NNS cord-001734-bbeznd3r 335 26 for for IN cord-001734-bbeznd3r 335 27 the the DT cord-001734-bbeznd3r 335 28 dengue dengue NN cord-001734-bbeznd3r 335 29 protease protease NN cord-001734-bbeznd3r 335 30 . . . cord-001734-bbeznd3r 336 1 More more RBR cord-001734-bbeznd3r 336 2 specifically specifically RB cord-001734-bbeznd3r 336 3 , , , cord-001734-bbeznd3r 336 4 inhibitory inhibitory JJ cord-001734-bbeznd3r 336 5 molecules molecule NNS cord-001734-bbeznd3r 336 6 might may MD cord-001734-bbeznd3r 336 7 be be VB cord-001734-bbeznd3r 336 8 developed develop VBN cord-001734-bbeznd3r 336 9 to to IN cord-001734-bbeznd3r 336 10 : : : cord-001734-bbeznd3r 336 11 1 1 LS cord-001734-bbeznd3r 336 12 ) ) -RRB- cord-001734-bbeznd3r 336 13 trap trap VB cord-001734-bbeznd3r 336 14 the the DT cord-001734-bbeznd3r 336 15 NS2B NS2B NNP cord-001734-bbeznd3r 336 16 - - HYPH cord-001734-bbeznd3r 336 17 mediated mediate VBN cord-001734-bbeznd3r 336 18 folding folding NN cord-001734-bbeznd3r 336 19 into into IN cord-001734-bbeznd3r 336 20 an an DT cord-001734-bbeznd3r 336 21 inactive inactive JJ cord-001734-bbeznd3r 336 22 intermediate intermediate JJ cord-001734-bbeznd3r 336 23 as as IN cord-001734-bbeznd3r 336 24 exemplified exemplify VBN cord-001734-bbeznd3r 336 25 by by IN cord-001734-bbeznd3r 336 26 the the DT cord-001734-bbeznd3r 336 27 truncated truncated JJ cord-001734-bbeznd3r 336 28 NS2B NS2B NNP cord-001734-bbeznd3r 336 29 ; ; : cord-001734-bbeznd3r 336 30 and and CC cord-001734-bbeznd3r 336 31 2 2 LS cord-001734-bbeznd3r 336 32 ) ) -RRB- cord-001734-bbeznd3r 336 33 decouple decouple VBP cord-001734-bbeznd3r 336 34 the the DT cord-001734-bbeznd3r 336 35 global global JJ cord-001734-bbeznd3r 336 36 correlation correlation NN cord-001734-bbeznd3r 336 37 network network NN cord-001734-bbeznd3r 336 38 of of IN cord-001734-bbeznd3r 336 39 the the DT cord-001734-bbeznd3r 336 40 NS2B NS2B NNP cord-001734-bbeznd3r 336 41 - - HYPH cord-001734-bbeznd3r 336 42 NS3pro NS3pro NNP cord-001734-bbeznd3r 336 43 complex complex NN cord-001734-bbeznd3r 336 44 . . . cord-001734-bbeznd3r 337 1 Furthermore furthermore RB cord-001734-bbeznd3r 337 2 , , , cord-001734-bbeznd3r 337 3 our -PRON- PRP$ cord-001734-bbeznd3r 337 4 success success NN cord-001734-bbeznd3r 337 5 in in IN cord-001734-bbeznd3r 337 6 in in FW cord-001734-bbeznd3r 337 7 vitro vitro FW cord-001734-bbeznd3r 337 8 refolding refolde VBG cord-001734-bbeznd3r 337 9 of of IN cord-001734-bbeznd3r 337 10 the the DT cord-001734-bbeznd3r 337 11 active active JJ cord-001734-bbeznd3r 337 12 NS3pro ns3pro NN cord-001734-bbeznd3r 337 13 in in IN cord-001734-bbeznd3r 337 14 complex complex NN cord-001734-bbeznd3r 337 15 with with IN cord-001734-bbeznd3r 337 16 both both DT cord-001734-bbeznd3r 337 17 NS2B NS2B NNS cord-001734-bbeznd3r 337 18 ( ( -LRB- cord-001734-bbeznd3r 337 19 48 48 CD cord-001734-bbeznd3r 337 20 - - SYM cord-001734-bbeznd3r 337 21 100 100 CD cord-001734-bbeznd3r 337 22 ) ) -RRB- cord-001734-bbeznd3r 337 23 in in IN cord-001734-bbeznd3r 337 24 buffer buffer NN cord-001734-bbeznd3r 337 25 and and CC cord-001734-bbeznd3r 337 26 NS2B NS2B NNP cord-001734-bbeznd3r 337 27 in in IN cord-001734-bbeznd3r 337 28 the the DT cord-001734-bbeznd3r 337 29 micelle micelle NN cord-001734-bbeznd3r 337 30 provides provide VBZ cord-001734-bbeznd3r 337 31 experimental experimental JJ cord-001734-bbeznd3r 337 32 platforms platform NNS cord-001734-bbeznd3r 337 33 for for IN cord-001734-bbeznd3r 337 34 implementing implement VBG cord-001734-bbeznd3r 337 35 the the DT cord-001734-bbeznd3r 337 36 above above RB cord-001734-bbeznd3r 337 37 - - HYPH cord-001734-bbeznd3r 337 38 proposed propose VBN cord-001734-bbeznd3r 337 39 approaches approach NNS cord-001734-bbeznd3r 337 40 of of IN cord-001734-bbeznd3r 337 41 inhibitor inhibitor NN cord-001734-bbeznd3r 337 42 design design NN cord-001734-bbeznd3r 337 43 as as RB cord-001734-bbeznd3r 337 44 well well RB cord-001734-bbeznd3r 337 45 as as IN cord-001734-bbeznd3r 337 46 to to TO cord-001734-bbeznd3r 337 47 decode decode VB cord-001734-bbeznd3r 337 48 the the DT cord-001734-bbeznd3r 337 49 underlying underlying JJ cord-001734-bbeznd3r 337 50 mechanism mechanism NN cord-001734-bbeznd3r 337 51 for for IN cord-001734-bbeznd3r 337 52 inhibitors inhibitor NNS cord-001734-bbeznd3r 337 53 obtained obtain VBN cord-001734-bbeznd3r 337 54 by by IN cord-001734-bbeznd3r 337 55 high high JJ cord-001734-bbeznd3r 337 56 through through IN cord-001734-bbeznd3r 337 57 - - HYPH cord-001734-bbeznd3r 337 58 put put NN cord-001734-bbeznd3r 337 59 screening screening NN cord-001734-bbeznd3r 337 60 . . . cord-001734-bbeznd3r 338 1 For for IN cord-001734-bbeznd3r 338 2 example example NN cord-001734-bbeznd3r 338 3 , , , cord-001734-bbeznd3r 338 4 recently recently RB cord-001734-bbeznd3r 338 5 the the DT cord-001734-bbeznd3r 338 6 dengue dengue NN cord-001734-bbeznd3r 338 7 protease protease NN cord-001734-bbeznd3r 338 8 inhibitors inhibitor NNS cord-001734-bbeznd3r 338 9 were be VBD cord-001734-bbeznd3r 338 10 identified identify VBN cord-001734-bbeznd3r 338 11 by by IN cord-001734-bbeznd3r 338 12 high high JJ cord-001734-bbeznd3r 338 13 through through IN cord-001734-bbeznd3r 338 14 - - HYPH cord-001734-bbeznd3r 338 15 put put NN cord-001734-bbeznd3r 338 16 screening screening NN cord-001734-bbeznd3r 338 17 , , , cord-001734-bbeznd3r 338 18 which which WDT cord-001734-bbeznd3r 338 19 were be VBD cord-001734-bbeznd3r 338 20 implied imply VBN cord-001734-bbeznd3r 338 21 to to TO cord-001734-bbeznd3r 338 22 target target VB cord-001734-bbeznd3r 338 23 the the DT cord-001734-bbeznd3r 338 24 NS2B NS2B NNP cord-001734-bbeznd3r 338 25 - - HYPH cord-001734-bbeznd3r 338 26 NS3pro ns3pro NN cord-001734-bbeznd3r 338 27 interface interface NN cord-001734-bbeznd3r 338 28 by by IN cord-001734-bbeznd3r 338 29 in in IN cord-001734-bbeznd3r 338 30 silico silico NN cord-001734-bbeznd3r 338 31 prediction prediction NN cord-001734-bbeznd3r 338 32 or or CC cord-001734-bbeznd3r 338 33 mutagenesis mutagenesis NN cord-001734-bbeznd3r 338 34 [ [ -LRB- cord-001734-bbeznd3r 338 35 55 55 CD cord-001734-bbeznd3r 338 36 , , , cord-001734-bbeznd3r 338 37 56 56 CD cord-001734-bbeznd3r 338 38 ] ] -RRB- cord-001734-bbeznd3r 338 39 . . . cord-001734-bbeznd3r 339 1 It -PRON- PRP cord-001734-bbeznd3r 339 2 would would MD cord-001734-bbeznd3r 339 3 be be VB cord-001734-bbeznd3r 339 4 of of IN cord-001734-bbeznd3r 339 5 significant significant JJ cord-001734-bbeznd3r 339 6 interest interest NN cord-001734-bbeznd3r 339 7 to to TO cord-001734-bbeznd3r 339 8 delineate delineate VB cord-001734-bbeznd3r 339 9 how how WRB cord-001734-bbeznd3r 339 10 these these DT cord-001734-bbeznd3r 339 11 molecules molecule NNS cord-001734-bbeznd3r 339 12 achieve achieve VBP cord-001734-bbeznd3r 339 13 the the DT cord-001734-bbeznd3r 339 14 inhibitory inhibitory JJ cord-001734-bbeznd3r 339 15 effect effect NN cord-001734-bbeznd3r 339 16 : : : cord-001734-bbeznd3r 339 17 by by IN cord-001734-bbeznd3r 339 18 trapping trap VBG cord-001734-bbeznd3r 339 19 the the DT cord-001734-bbeznd3r 339 20 folding folding NN cord-001734-bbeznd3r 339 21 or or CC cord-001734-bbeznd3r 339 22 modulating modulate VBG cord-001734-bbeznd3r 339 23 the the DT cord-001734-bbeznd3r 339 24 dynamics dynamic NNS cord-001734-bbeznd3r 339 25 of of IN cord-001734-bbeznd3r 339 26 the the DT cord-001734-bbeznd3r 339 27 protease protease NN cord-001734-bbeznd3r 339 28 complex complex NN cord-001734-bbeznd3r 339 29 , , , cord-001734-bbeznd3r 339 30 if if IN cord-001734-bbeznd3r 339 31 they -PRON- PRP cord-001734-bbeznd3r 339 32 directly directly RB cord-001734-bbeznd3r 339 33 target target VBP cord-001734-bbeznd3r 339 34 the the DT cord-001734-bbeznd3r 339 35 NS2B NS2B NNP cord-001734-bbeznd3r 339 36 - - HYPH cord-001734-bbeznd3r 339 37 NS3pro ns3pro NN cord-001734-bbeznd3r 339 38 interface interface NN cord-001734-bbeznd3r 339 39 . . . cord-001734-bbeznd3r 340 1 In in IN cord-001734-bbeznd3r 340 2 summary summary NN cord-001734-bbeznd3r 340 3 , , , cord-001734-bbeznd3r 340 4 our -PRON- PRP$ cord-001734-bbeznd3r 340 5 study study NN cord-001734-bbeznd3r 340 6 decrypted decrypt VBD cord-001734-bbeznd3r 340 7 that that IN cord-001734-bbeznd3r 340 8 the the DT cord-001734-bbeznd3r 340 9 dengue dengue NN cord-001734-bbeznd3r 340 10 NS3pro NS3pro NNP cord-001734-bbeznd3r 340 11 domain domain NN cord-001734-bbeznd3r 340 12 is be VBZ cord-001734-bbeznd3r 340 13 the the DT cord-001734-bbeznd3r 340 14 first first JJ cord-001734-bbeznd3r 340 15 intrinsicallydisordered intrinsicallydisordered JJ cord-001734-bbeznd3r 340 16 chymotrypsin chymotrypsin NN cord-001734-bbeznd3r 340 17 - - HYPH cord-001734-bbeznd3r 340 18 like like JJ cord-001734-bbeznd3r 340 19 fold fold NN cord-001734-bbeznd3r 340 20 which which WDT cord-001734-bbeznd3r 340 21 absolutely absolutely RB cord-001734-bbeznd3r 340 22 requests request VBZ cord-001734-bbeznd3r 340 23 the the DT cord-001734-bbeznd3r 340 24 NS2B NS2B NNP cord-001734-bbeznd3r 340 25 cofactor cofactor NN cord-001734-bbeznd3r 340 26 to to TO cord-001734-bbeznd3r 340 27 coordinate coordinate VB cord-001734-bbeznd3r 340 28 the the DT cord-001734-bbeznd3r 340 29 correct correct JJ cord-001734-bbeznd3r 340 30 folding folding NN cord-001734-bbeznd3r 340 31 as as RB cord-001734-bbeznd3r 340 32 well well RB cord-001734-bbeznd3r 340 33 as as IN cord-001734-bbeznd3r 340 34 correlated correlate VBN cord-001734-bbeznd3r 340 35 motions motion NNS cord-001734-bbeznd3r 340 36 of of IN cord-001734-bbeznd3r 340 37 the the DT cord-001734-bbeznd3r 340 38 NS2B NS2B NNP cord-001734-bbeznd3r 340 39 - - HYPH cord-001734-bbeznd3r 340 40 NS3pro NS3pro NNP cord-001734-bbeznd3r 340 41 complex complex NN cord-001734-bbeznd3r 340 42 to to TO cord-001734-bbeznd3r 340 43 achieve achieve VB cord-001734-bbeznd3r 340 44 its -PRON- PRP$ cord-001734-bbeznd3r 340 45 catalytic catalytic JJ cord-001734-bbeznd3r 340 46 function function NN cord-001734-bbeznd3r 340 47 . . . cord-001734-bbeznd3r 341 1 In in IN cord-001734-bbeznd3r 341 2 light light NN cord-001734-bbeznd3r 341 3 of of IN cord-001734-bbeznd3r 341 4 a a DT cord-001734-bbeznd3r 341 5 recent recent JJ cord-001734-bbeznd3r 341 6 study study NN cord-001734-bbeznd3r 341 7 [ [ -LRB- cord-001734-bbeznd3r 341 8 47 47 CD cord-001734-bbeznd3r 341 9 ] ] -RRB- cord-001734-bbeznd3r 341 10 , , , cord-001734-bbeznd3r 341 11 the the DT cord-001734-bbeznd3r 341 12 disordered disordered JJ cord-001734-bbeznd3r 341 13 NS3pro ns3pro NN cord-001734-bbeznd3r 341 14 is be VBZ cord-001734-bbeznd3r 341 15 needed need VBN cord-001734-bbeznd3r 341 16 for for IN cord-001734-bbeznd3r 341 17 interacting interact VBG cord-001734-bbeznd3r 341 18 with with IN cord-001734-bbeznd3r 341 19 the the DT cord-001734-bbeznd3r 341 20 human human JJ cord-001734-bbeznd3r 341 21 host host NN cord-001734-bbeznd3r 341 22 factor factor NN cord-001734-bbeznd3r 341 23 to to TO cord-001734-bbeznd3r 341 24 initiate initiate VB cord-001734-bbeznd3r 341 25 the the DT cord-001734-bbeznd3r 341 26 membrane membrane NN cord-001734-bbeznd3r 341 27 remodeling remodeling NN cord-001734-bbeznd3r 341 28 . . . cord-001734-bbeznd3r 342 1 Furthermore furthermore RB cord-001734-bbeznd3r 342 2 , , , cord-001734-bbeznd3r 342 3 our -PRON- PRP$ cord-001734-bbeznd3r 342 4 results result NNS cord-001734-bbeznd3r 342 5 also also RB cord-001734-bbeznd3r 342 6 imply imply VBP cord-001734-bbeznd3r 342 7 potential potential JJ cord-001734-bbeznd3r 342 8 strategies strategy NNS cord-001734-bbeznd3r 342 9 to to TO cord-001734-bbeznd3r 342 10 manipulate manipulate VB cord-001734-bbeznd3r 342 11 the the DT cord-001734-bbeznd3r 342 12 NS2B NS2B NNP cord-001734-bbeznd3r 342 13 - - HYPH cord-001734-bbeznd3r 342 14 NS3pro ns3pro NN cord-001734-bbeznd3r 342 15 interface interface NN cord-001734-bbeznd3r 342 16 for for IN cord-001734-bbeznd3r 342 17 design design NN cord-001734-bbeznd3r 342 18 of of IN cord-001734-bbeznd3r 342 19 molecules molecule NNS cord-001734-bbeznd3r 342 20 in in IN cord-001734-bbeznd3r 342 21 the the DT cord-001734-bbeznd3r 342 22 future future NN cord-001734-bbeznd3r 342 23 , , , cord-001734-bbeznd3r 342 24 which which WDT cord-001734-bbeznd3r 342 25 may may MD cord-001734-bbeznd3r 342 26 effectively effectively RB cord-001734-bbeznd3r 342 27 and and CC cord-001734-bbeznd3r 342 28 specifically specifically RB cord-001734-bbeznd3r 342 29 inhibit inhibit VB cord-001734-bbeznd3r 342 30 the the DT cord-001734-bbeznd3r 342 31 protease protease NN cord-001734-bbeznd3r 342 32 activity activity NN cord-001734-bbeznd3r 342 33 for for IN cord-001734-bbeznd3r 342 34 treating treat VBG cord-001734-bbeznd3r 342 35 the the DT cord-001734-bbeznd3r 342 36 dengue dengue NN cord-001734-bbeznd3r 342 37 infection infection NN cord-001734-bbeznd3r 342 38 . . . cord-001734-bbeznd3r 342 39 _SP cord-001734-bbeznd3r 343 1 Best good JJS cord-001734-bbeznd3r 343 2 practices practice NNS cord-001734-bbeznd3r 343 3 in in IN cord-001734-bbeznd3r 343 4 dengue dengue NN cord-001734-bbeznd3r 343 5 surveillance surveillance NN cord-001734-bbeznd3r 343 6 : : : cord-001734-bbeznd3r 343 7 a a DT cord-001734-bbeznd3r 343 8 report report NN cord-001734-bbeznd3r 343 9 from from IN cord-001734-bbeznd3r 343 10 the the DT cord-001734-bbeznd3r 343 11 Asia Asia NNP cord-001734-bbeznd3r 343 12 - - HYPH cord-001734-bbeznd3r 343 13 Pacific Pacific NNP cord-001734-bbeznd3r 343 14 and and CC cord-001734-bbeznd3r 343 15 Americas Americas NNP cord-001734-bbeznd3r 343 16 Dengue Dengue NNP cord-001734-bbeznd3r 343 17 Prevention Prevention NNP cord-001734-bbeznd3r 343 18 Boards board NNS cord-001734-bbeznd3r 344 1 The the DT cord-001734-bbeznd3r 344 2 global global JJ cord-001734-bbeznd3r 344 3 distribution distribution NN cord-001734-bbeznd3r 344 4 and and CC cord-001734-bbeznd3r 344 5 burden burden NN cord-001734-bbeznd3r 344 6 of of IN cord-001734-bbeznd3r 344 7 dengue dengue NN cord-001734-bbeznd3r 345 1 The the DT cord-001734-bbeznd3r 345 2 dengue dengue NN cord-001734-bbeznd3r 345 3 viruses viruse VBZ cord-001734-bbeznd3r 345 4 Dengue dengue NN cord-001734-bbeznd3r 345 5 : : : cord-001734-bbeznd3r 345 6 a a DT cord-001734-bbeznd3r 345 7 continuing continue VBG cord-001734-bbeznd3r 345 8 global global JJ cord-001734-bbeznd3r 345 9 threat threat NN cord-001734-bbeznd3r 345 10 Structural structural JJ cord-001734-bbeznd3r 345 11 proteomics proteomic NNS cord-001734-bbeznd3r 345 12 of of IN cord-001734-bbeznd3r 345 13 dengue dengue NN cord-001734-bbeznd3r 345 14 virus virus NN cord-001734-bbeznd3r 345 15 Structural structural JJ cord-001734-bbeznd3r 345 16 biology biology NN cord-001734-bbeznd3r 345 17 of of IN cord-001734-bbeznd3r 345 18 dengue dengue NN cord-001734-bbeznd3r 345 19 virus virus NN cord-001734-bbeznd3r 345 20 enzymes enzyme NNS cord-001734-bbeznd3r 345 21 : : : cord-001734-bbeznd3r 345 22 towards towards IN cord-001734-bbeznd3r 345 23 rational rational JJ cord-001734-bbeznd3r 345 24 design design NN cord-001734-bbeznd3r 345 25 of of IN cord-001734-bbeznd3r 345 26 therapeutics therapeutic NNS cord-001734-bbeznd3r 345 27 Structural structural JJ cord-001734-bbeznd3r 345 28 basis basis NN cord-001734-bbeznd3r 345 29 for for IN cord-001734-bbeznd3r 345 30 the the DT cord-001734-bbeznd3r 345 31 activation activation NN cord-001734-bbeznd3r 345 32 of of IN cord-001734-bbeznd3r 345 33 flaviviral flaviviral NN cord-001734-bbeznd3r 345 34 NS3 ns3 RB cord-001734-bbeznd3r 345 35 proteases protease NNS cord-001734-bbeznd3r 345 36 from from IN cord-001734-bbeznd3r 345 37 dengue dengue NN cord-001734-bbeznd3r 345 38 and and CC cord-001734-bbeznd3r 345 39 West West NNP cord-001734-bbeznd3r 345 40 Nile Nile NNP cord-001734-bbeznd3r 345 41 virus virus NN cord-001734-bbeznd3r 345 42 Ligand ligand NN cord-001734-bbeznd3r 345 43 - - HYPH cord-001734-bbeznd3r 345 44 bound bind VBN cord-001734-bbeznd3r 345 45 structures structure NNS cord-001734-bbeznd3r 345 46 of of IN cord-001734-bbeznd3r 345 47 the the DT cord-001734-bbeznd3r 345 48 dengue dengue NN cord-001734-bbeznd3r 345 49 virus virus NN cord-001734-bbeznd3r 345 50 protease protease NN cord-001734-bbeznd3r 345 51 reveal reveal VBP cord-001734-bbeznd3r 345 52 the the DT cord-001734-bbeznd3r 345 53 active active JJ cord-001734-bbeznd3r 345 54 conformation conformation NN cord-001734-bbeznd3r 345 55 Binding Binding NNP cord-001734-bbeznd3r 345 56 of of IN cord-001734-bbeznd3r 345 57 low low JJ cord-001734-bbeznd3r 345 58 molecular molecular JJ cord-001734-bbeznd3r 345 59 weight weight NN cord-001734-bbeznd3r 345 60 inhibitors inhibitor NNS cord-001734-bbeznd3r 345 61 promotes promote VBZ cord-001734-bbeznd3r 345 62 large large JJ cord-001734-bbeznd3r 345 63 conformational conformational JJ cord-001734-bbeznd3r 345 64 changes change NNS cord-001734-bbeznd3r 345 65 in in IN cord-001734-bbeznd3r 345 66 the the DT cord-001734-bbeznd3r 345 67 dengue dengue NN cord-001734-bbeznd3r 345 68 virus virus NN cord-001734-bbeznd3r 345 69 NS2B NS2B NNP cord-001734-bbeznd3r 345 70 - - : cord-001734-bbeznd3r 345 71 NS3 ns3 RB cord-001734-bbeznd3r 345 72 protease protease NN cord-001734-bbeznd3r 345 73 : : : cord-001734-bbeznd3r 345 74 fold fold VB cord-001734-bbeznd3r 345 75 analysis analysis NN cord-001734-bbeznd3r 345 76 by by IN cord-001734-bbeznd3r 345 77 pseudocontact pseudocontact NN cord-001734-bbeznd3r 345 78 shifts shift VBZ cord-001734-bbeznd3r 345 79 NMR NMR NNP cord-001734-bbeznd3r 345 80 analysis analysis NN cord-001734-bbeznd3r 345 81 of of IN cord-001734-bbeznd3r 345 82 a a DT cord-001734-bbeznd3r 345 83 novel novel NN cord-001734-bbeznd3r 345 84 enzymatically enzymatically RB cord-001734-bbeznd3r 345 85 active active JJ cord-001734-bbeznd3r 345 86 unlinked unlinked JJ cord-001734-bbeznd3r 345 87 dengue dengue NN cord-001734-bbeznd3r 346 1 NS2B NS2B NNP cord-001734-bbeznd3r 346 2 - - : cord-001734-bbeznd3r 346 3 NS3 ns3 RB cord-001734-bbeznd3r 346 4 protease protease NN cord-001734-bbeznd3r 346 5 complex complex NN cord-001734-bbeznd3r 347 1 Binding binding NN cord-001734-bbeznd3r 347 2 mode mode NN cord-001734-bbeznd3r 347 3 of of IN cord-001734-bbeznd3r 347 4 the the DT cord-001734-bbeznd3r 347 5 activity activity NN cord-001734-bbeznd3r 347 6 - - HYPH cord-001734-bbeznd3r 347 7 modulating modulate VBG cord-001734-bbeznd3r 347 8 C c NN cord-001734-bbeznd3r 347 9 - - HYPH cord-001734-bbeznd3r 347 10 terminal terminal NN cord-001734-bbeznd3r 347 11 segment segment NN cord-001734-bbeznd3r 347 12 of of IN cord-001734-bbeznd3r 347 13 NS2B NS2B NNP cord-001734-bbeznd3r 347 14 to to TO cord-001734-bbeznd3r 347 15 NS3 ns3 RB cord-001734-bbeznd3r 347 16 in in IN cord-001734-bbeznd3r 347 17 the the DT cord-001734-bbeznd3r 347 18 dengue dengue NN cord-001734-bbeznd3r 347 19 virus virus NN cord-001734-bbeznd3r 347 20 NS2B NS2B NNP cord-001734-bbeznd3r 347 21 - - : cord-001734-bbeznd3r 347 22 NS3 ns3 RB cord-001734-bbeznd3r 347 23 protease protease NN cord-001734-bbeznd3r 348 1 The the DT cord-001734-bbeznd3r 348 2 dengue dengue NN cord-001734-bbeznd3r 348 3 virus virus NN cord-001734-bbeznd3r 348 4 NS2B NS2B NNP cord-001734-bbeznd3r 348 5 - - : cord-001734-bbeznd3r 348 6 NS3 ns3 RB cord-001734-bbeznd3r 348 7 protease protease NN cord-001734-bbeznd3r 348 8 retains retain VBZ cord-001734-bbeznd3r 348 9 the the DT cord-001734-bbeznd3r 348 10 closed closed JJ cord-001734-bbeznd3r 348 11 conformation conformation NN cord-001734-bbeznd3r 348 12 in in IN cord-001734-bbeznd3r 348 13 the the DT cord-001734-bbeznd3r 348 14 complex complex NN cord-001734-bbeznd3r 348 15 with with IN cord-001734-bbeznd3r 348 16 BPTI BPTI NNP cord-001734-bbeznd3r 348 17 Mechanism Mechanism NNP cord-001734-bbeznd3r 348 18 of of IN cord-001734-bbeznd3r 348 19 NS2B NS2B NNP cord-001734-bbeznd3r 348 20 - - HYPH cord-001734-bbeznd3r 348 21 mediated mediate VBN cord-001734-bbeznd3r 348 22 activation activation NN cord-001734-bbeznd3r 348 23 of of IN cord-001734-bbeznd3r 348 24 NS3pro NS3pro NNP cord-001734-bbeznd3r 348 25 in in IN cord-001734-bbeznd3r 348 26 dengue dengue NN cord-001734-bbeznd3r 348 27 virus virus NN cord-001734-bbeznd3r 348 28 : : : cord-001734-bbeznd3r 348 29 molecular molecular JJ cord-001734-bbeznd3r 348 30 dynamics dynamic NNS cord-001734-bbeznd3r 348 31 simulations simulation NNS cord-001734-bbeznd3r 348 32 and and CC cord-001734-bbeznd3r 348 33 bioassays bioassays JJ cord-001734-bbeznd3r 348 34 New new JJ cord-001734-bbeznd3r 348 35 binding bind VBG cord-001734-bbeznd3r 348 36 site site NN cord-001734-bbeznd3r 348 37 conformations conformation NNS cord-001734-bbeznd3r 348 38 of of IN cord-001734-bbeznd3r 348 39 the the DT cord-001734-bbeznd3r 348 40 dengue dengue NN cord-001734-bbeznd3r 348 41 virus virus NN cord-001734-bbeznd3r 348 42 NS3 ns3 RB cord-001734-bbeznd3r 348 43 protease protease NN cord-001734-bbeznd3r 348 44 accessed access VBN cord-001734-bbeznd3r 348 45 by by IN cord-001734-bbeznd3r 348 46 molecular molecular JJ cord-001734-bbeznd3r 348 47 dynamics dynamic NNS cord-001734-bbeznd3r 348 48 simulation simulation NN cord-001734-bbeznd3r 348 49 Resurrecting resurrect VBG cord-001734-bbeznd3r 348 50 abandoned abandon VBN cord-001734-bbeznd3r 348 51 proteins protein NNS cord-001734-bbeznd3r 348 52 with with IN cord-001734-bbeznd3r 348 53 pure pure JJ cord-001734-bbeznd3r 348 54 water water NN cord-001734-bbeznd3r 348 55 : : : cord-001734-bbeznd3r 348 56 CD CD NNP cord-001734-bbeznd3r 348 57 and and CC cord-001734-bbeznd3r 348 58 NMR NMR NNP cord-001734-bbeznd3r 348 59 studies study NNS cord-001734-bbeznd3r 348 60 of of IN cord-001734-bbeznd3r 348 61 protein protein NN cord-001734-bbeznd3r 348 62 fragments fragment NNS cord-001734-bbeznd3r 348 63 solubilized solubilize VBN cord-001734-bbeznd3r 348 64 in in IN cord-001734-bbeznd3r 348 65 salt salt NN cord-001734-bbeznd3r 348 66 - - HYPH cord-001734-bbeznd3r 348 67 free free JJ cord-001734-bbeznd3r 348 68 water water NN cord-001734-bbeznd3r 348 69 Insight Insight NNP cord-001734-bbeznd3r 348 70 into into IN cord-001734-bbeznd3r 348 71 " " `` cord-001734-bbeznd3r 348 72 insoluble insoluble JJ cord-001734-bbeznd3r 348 73 proteins protein NNS cord-001734-bbeznd3r 348 74 " " '' cord-001734-bbeznd3r 348 75 with with IN cord-001734-bbeznd3r 348 76 pure pure JJ cord-001734-bbeznd3r 348 77 water water NN cord-001734-bbeznd3r 348 78 Intrinsically intrinsically RB cord-001734-bbeznd3r 348 79 insoluble insoluble JJ cord-001734-bbeznd3r 348 80 proteins protein NNS cord-001734-bbeznd3r 348 81 " " '' cord-001734-bbeznd3r 348 82 and and CC cord-001734-bbeznd3r 348 83 " " `` cord-001734-bbeznd3r 348 84 dark dark JJ cord-001734-bbeznd3r 348 85 mediators mediator NNS cord-001734-bbeznd3r 348 86 " " '' cord-001734-bbeznd3r 348 87 revealed reveal VBN cord-001734-bbeznd3r 348 88 by by IN cord-001734-bbeznd3r 348 89 studies study NNS cord-001734-bbeznd3r 348 90 on on IN cord-001734-bbeznd3r 348 91 " " `` cord-001734-bbeznd3r 348 92 insoluble insoluble JJ cord-001734-bbeznd3r 348 93 proteins protein NNS cord-001734-bbeznd3r 348 94 Resolving resolve VBG cord-001734-bbeznd3r 348 95 the the DT cord-001734-bbeznd3r 348 96 paradox paradox NN cord-001734-bbeznd3r 348 97 for for IN cord-001734-bbeznd3r 348 98 protein protein NN cord-001734-bbeznd3r 348 99 aggregation aggregation NN cord-001734-bbeznd3r 348 100 diseases disease NNS cord-001734-bbeznd3r 348 101 : : : cord-001734-bbeznd3r 349 1 NMR NMR NNP cord-001734-bbeznd3r 349 2 structure structure NN cord-001734-bbeznd3r 349 3 and and CC cord-001734-bbeznd3r 349 4 dynamics dynamic NNS cord-001734-bbeznd3r 349 5 of of IN cord-001734-bbeznd3r 349 6 the the DT cord-001734-bbeznd3r 349 7 membrane membrane NN cord-001734-bbeznd3r 349 8 - - HYPH cord-001734-bbeznd3r 349 9 embedded embed VBN cord-001734-bbeznd3r 349 10 P56S P56S NNP cord-001734-bbeznd3r 349 11 - - HYPH cord-001734-bbeznd3r 349 12 MSP MSP NNP cord-001734-bbeznd3r 349 13 causing cause VBG cord-001734-bbeznd3r 349 14 ALS ALS NNP cord-001734-bbeznd3r 349 15 imply imply VBP cord-001734-bbeznd3r 349 16 a a DT cord-001734-bbeznd3r 349 17 common common JJ cord-001734-bbeznd3r 349 18 mechanism mechanism NN cord-001734-bbeznd3r 349 19 for for IN cord-001734-bbeznd3r 349 20 aggregation aggregation NN cord-001734-bbeznd3r 349 21 - - HYPH cord-001734-bbeznd3r 349 22 prone prone JJ cord-001734-bbeznd3r 349 23 proteins protein NNS cord-001734-bbeznd3r 350 1 to to TO cord-001734-bbeznd3r 350 2 attack attack VB cord-001734-bbeznd3r 350 3 membranes membrane NNS cord-001734-bbeznd3r 350 4 TDP-43 TDP-43 NNP cord-001734-bbeznd3r 350 5 N n CD cord-001734-bbeznd3r 350 6 terminus terminus NN cord-001734-bbeznd3r 350 7 encodes encode VBZ cord-001734-bbeznd3r 350 8 a a DT cord-001734-bbeznd3r 350 9 novel novel JJ cord-001734-bbeznd3r 350 10 ubiquitin ubiquitin NN cord-001734-bbeznd3r 350 11 - - HYPH cord-001734-bbeznd3r 350 12 like like JJ cord-001734-bbeznd3r 350 13 fold fold NN cord-001734-bbeznd3r 350 14 and and CC cord-001734-bbeznd3r 350 15 its -PRON- PRP$ cord-001734-bbeznd3r 350 16 unfolded unfold VBN cord-001734-bbeznd3r 350 17 form form NN cord-001734-bbeznd3r 350 18 in in IN cord-001734-bbeznd3r 350 19 equilibrium equilibrium NN cord-001734-bbeznd3r 350 20 that that WDT cord-001734-bbeznd3r 350 21 can can MD cord-001734-bbeznd3r 350 22 be be VB cord-001734-bbeznd3r 350 23 shifted shift VBN cord-001734-bbeznd3r 350 24 by by IN cord-001734-bbeznd3r 350 25 binding bind VBG cord-001734-bbeznd3r 350 26 to to IN cord-001734-bbeznd3r 350 27 ssDNA ssDNA VBG cord-001734-bbeznd3r 350 28 Dynamically dynamically RB cord-001734-bbeznd3r 350 29 - - HYPH cord-001734-bbeznd3r 350 30 driven drive VBN cord-001734-bbeznd3r 350 31 inactivation inactivation NN cord-001734-bbeznd3r 350 32 of of IN cord-001734-bbeznd3r 350 33 the the DT cord-001734-bbeznd3r 350 34 catalytic catalytic JJ cord-001734-bbeznd3r 350 35 machinery machinery NN cord-001734-bbeznd3r 350 36 of of IN cord-001734-bbeznd3r 350 37 the the DT cord-001734-bbeznd3r 350 38 SARS SARS NNP cord-001734-bbeznd3r 350 39 3C 3C NNP cord-001734-bbeznd3r 350 40 - - HYPH cord-001734-bbeznd3r 350 41 like like JJ cord-001734-bbeznd3r 350 42 protease protease NN cord-001734-bbeznd3r 350 43 by by IN cord-001734-bbeznd3r 350 44 the the DT cord-001734-bbeznd3r 350 45 N214A N214A NNP cord-001734-bbeznd3r 350 46 mutation mutation NN cord-001734-bbeznd3r 350 47 on on IN cord-001734-bbeznd3r 350 48 the the DT cord-001734-bbeznd3r 350 49 extra extra JJ cord-001734-bbeznd3r 350 50 domain domain NN cord-001734-bbeznd3r 350 51 Dynamically dynamically RB cord-001734-bbeznd3r 350 52 - - HYPH cord-001734-bbeznd3r 350 53 driven drive VBN cord-001734-bbeznd3r 350 54 enhancement enhancement NN cord-001734-bbeznd3r 350 55 of of IN cord-001734-bbeznd3r 350 56 the the DT cord-001734-bbeznd3r 350 57 catalytic catalytic JJ cord-001734-bbeznd3r 350 58 machinery machinery NN cord-001734-bbeznd3r 350 59 of of IN cord-001734-bbeznd3r 350 60 the the DT cord-001734-bbeznd3r 350 61 SARS SARS NNP cord-001734-bbeznd3r 350 62 3C 3C NNP cord-001734-bbeznd3r 350 63 - - HYPH cord-001734-bbeznd3r 350 64 Like like JJ cord-001734-bbeznd3r 350 65 protease protease NN cord-001734-bbeznd3r 350 66 by by IN cord-001734-bbeznd3r 350 67 the the DT cord-001734-bbeznd3r 350 68 S284-T285-I286 S284-T285-I286 NNP cord-001734-bbeznd3r 350 69 / / SYM cord-001734-bbeznd3r 350 70 A A NNP cord-001734-bbeznd3r 350 71 mutations mutation NNS cord-001734-bbeznd3r 350 72 on on IN cord-001734-bbeznd3r 350 73 the the DT cord-001734-bbeznd3r 350 74 extra extra JJ cord-001734-bbeznd3r 350 75 domain domain NN cord-001734-bbeznd3r 350 76 Intrinsically intrinsically RB cord-001734-bbeznd3r 350 77 unstructured unstructured JJ cord-001734-bbeznd3r 350 78 domain domain NN cord-001734-bbeznd3r 350 79 3 3 CD cord-001734-bbeznd3r 350 80 of of IN cord-001734-bbeznd3r 350 81 hepatitis hepatitis NN cord-001734-bbeznd3r 350 82 C C NNP cord-001734-bbeznd3r 350 83 Virus virus NN cord-001734-bbeznd3r 351 1 NS5A NS5A NNP cord-001734-bbeznd3r 351 2 forms form VBZ cord-001734-bbeznd3r 351 3 a a DT cord-001734-bbeznd3r 351 4 " " `` cord-001734-bbeznd3r 351 5 fuzzy fuzzy JJ cord-001734-bbeznd3r 351 6 complex complex NN cord-001734-bbeznd3r 351 7 " " '' cord-001734-bbeznd3r 351 8 with with IN cord-001734-bbeznd3r 351 9 VAPB VAPB NNP cord-001734-bbeznd3r 351 10 - - HYPH cord-001734-bbeznd3r 351 11 MSP MSP NNP cord-001734-bbeznd3r 351 12 domain domain NN cord-001734-bbeznd3r 351 13 which which WDT cord-001734-bbeznd3r 351 14 carries carry VBZ cord-001734-bbeznd3r 351 15 ALS als NN cord-001734-bbeznd3r 351 16 - - HYPH cord-001734-bbeznd3r 351 17 causing cause VBG cord-001734-bbeznd3r 351 18 mutations mutation NNS cord-001734-bbeznd3r 351 19 How how WRB cord-001734-bbeznd3r 351 20 to to TO cord-001734-bbeznd3r 351 21 measure measure VB cord-001734-bbeznd3r 351 22 and and CC cord-001734-bbeznd3r 351 23 predict predict VB cord-001734-bbeznd3r 351 24 the the DT cord-001734-bbeznd3r 351 25 molar molar JJ cord-001734-bbeznd3r 351 26 absorption absorption NN cord-001734-bbeznd3r 351 27 coefficient coefficient NN cord-001734-bbeznd3r 351 28 of of IN cord-001734-bbeznd3r 351 29 a a DT cord-001734-bbeznd3r 351 30 protein protein NN cord-001734-bbeznd3r 351 31 NMRPipe nmrpipe NN cord-001734-bbeznd3r 351 32 : : : cord-001734-bbeznd3r 351 33 a a DT cord-001734-bbeznd3r 351 34 multidimensional multidimensional JJ cord-001734-bbeznd3r 351 35 spectral spectral JJ cord-001734-bbeznd3r 351 36 processing processing NN cord-001734-bbeznd3r 351 37 system system NN cord-001734-bbeznd3r 351 38 based base VBN cord-001734-bbeznd3r 351 39 on on IN cord-001734-bbeznd3r 351 40 UNIX UNIX NNP cord-001734-bbeznd3r 351 41 pipes pipe NNS cord-001734-bbeznd3r 351 42 NMRView nmrview JJ cord-001734-bbeznd3r 351 43 : : : cord-001734-bbeznd3r 352 1 A a DT cord-001734-bbeznd3r 352 2 computer computer NN cord-001734-bbeznd3r 352 3 program program NN cord-001734-bbeznd3r 352 4 for for IN cord-001734-bbeznd3r 352 5 the the DT cord-001734-bbeznd3r 352 6 visualization visualization NN cord-001734-bbeznd3r 352 7 and and CC cord-001734-bbeznd3r 352 8 analysis analysis NN cord-001734-bbeznd3r 352 9 of of IN cord-001734-bbeznd3r 352 10 NMR NMR NNP cord-001734-bbeznd3r 352 11 data data NN cord-001734-bbeznd3r 352 12 Determination determination NN cord-001734-bbeznd3r 352 13 of of IN cord-001734-bbeznd3r 352 14 secondary secondary JJ cord-001734-bbeznd3r 352 15 structure structure NN cord-001734-bbeznd3r 352 16 populations population NNS cord-001734-bbeznd3r 352 17 in in IN cord-001734-bbeznd3r 352 18 disordered disordered JJ cord-001734-bbeznd3r 352 19 states state NNS cord-001734-bbeznd3r 352 20 of of IN cord-001734-bbeznd3r 352 21 proteins protein NNS cord-001734-bbeznd3r 352 22 using use VBG cord-001734-bbeznd3r 352 23 nuclear nuclear JJ cord-001734-bbeznd3r 352 24 magnetic magnetic JJ cord-001734-bbeznd3r 352 25 resonance resonance NN cord-001734-bbeznd3r 352 26 chemical chemical NN cord-001734-bbeznd3r 352 27 shifts shift NNS cord-001734-bbeznd3r 352 28 Algorithms Algorithms NNP cord-001734-bbeznd3r 352 29 for for IN cord-001734-bbeznd3r 352 30 Highly highly RB cord-001734-bbeznd3r 352 31 Efficient efficient JJ cord-001734-bbeznd3r 352 32 , , , cord-001734-bbeznd3r 352 33 Load Load NNP cord-001734-bbeznd3r 352 34 - - HYPH cord-001734-bbeznd3r 352 35 Balanced Balanced NNP cord-001734-bbeznd3r 352 36 , , , cord-001734-bbeznd3r 352 37 and and CC cord-001734-bbeznd3r 352 38 Scalable Scalable NNP cord-001734-bbeznd3r 352 39 Molecular Molecular NNP cord-001734-bbeznd3r 352 40 Simulation Simulation NNP cord-001734-bbeznd3r 353 1 A a DT cord-001734-bbeznd3r 353 2 point point NN cord-001734-bbeznd3r 353 3 - - HYPH cord-001734-bbeznd3r 353 4 charge charge NN cord-001734-bbeznd3r 353 5 force force NN cord-001734-bbeznd3r 353 6 field field NN cord-001734-bbeznd3r 353 7 for for IN cord-001734-bbeznd3r 353 8 molecular molecular JJ cord-001734-bbeznd3r 353 9 mechanics mechanic NNS cord-001734-bbeznd3r 353 10 simulations simulation NNS cord-001734-bbeznd3r 353 11 of of IN cord-001734-bbeznd3r 353 12 proteins protein NNS cord-001734-bbeznd3r 353 13 based base VBN cord-001734-bbeznd3r 353 14 on on IN cord-001734-bbeznd3r 353 15 condensedphase condensedphase NN cord-001734-bbeznd3r 353 16 quantum quantum JJ cord-001734-bbeznd3r 353 17 mechanical mechanical JJ cord-001734-bbeznd3r 353 18 calculations calculation NNS cord-001734-bbeznd3r 353 19 LINCS LINCS NNP cord-001734-bbeznd3r 353 20 : : : cord-001734-bbeznd3r 354 1 A a DT cord-001734-bbeznd3r 354 2 linear linear JJ cord-001734-bbeznd3r 354 3 constraint constraint NN cord-001734-bbeznd3r 354 4 solver solver NN cord-001734-bbeznd3r 354 5 for for IN cord-001734-bbeznd3r 354 6 molecular molecular JJ cord-001734-bbeznd3r 354 7 simulations simulation NNS cord-001734-bbeznd3r 354 8 Quantifying quantify VBG cord-001734-bbeznd3r 354 9 correlations correlation NNS cord-001734-bbeznd3r 354 10 between between IN cord-001734-bbeznd3r 354 11 allosteric allosteric JJ cord-001734-bbeznd3r 354 12 sites site NNS cord-001734-bbeznd3r 354 13 in in IN cord-001734-bbeznd3r 354 14 thermodynamic thermodynamic JJ cord-001734-bbeznd3r 354 15 ensembles ensemble NNS cord-001734-bbeznd3r 354 16 NMR NMR NNP cord-001734-bbeznd3r 354 17 evidence evidence NN cord-001734-bbeznd3r 354 18 for for IN cord-001734-bbeznd3r 354 19 forming form VBG cord-001734-bbeznd3r 354 20 highly highly RB cord-001734-bbeznd3r 354 21 populated populated JJ cord-001734-bbeznd3r 354 22 helical helical JJ cord-001734-bbeznd3r 354 23 conformations conformation NNS cord-001734-bbeznd3r 354 24 in in IN cord-001734-bbeznd3r 354 25 the the DT cord-001734-bbeznd3r 354 26 partially partially RB cord-001734-bbeznd3r 354 27 folded fold VBN cord-001734-bbeznd3r 354 28 hNck2 hNck2 NNP cord-001734-bbeznd3r 354 29 SH3 SH3 NNP cord-001734-bbeznd3r 354 30 domain domain NN cord-001734-bbeznd3r 354 31 Unfolded unfold VBD cord-001734-bbeznd3r 354 32 proteins protein NNS cord-001734-bbeznd3r 354 33 and and CC cord-001734-bbeznd3r 354 34 protein protein NN cord-001734-bbeznd3r 354 35 folding folding NN cord-001734-bbeznd3r 354 36 studied study VBN cord-001734-bbeznd3r 354 37 by by IN cord-001734-bbeznd3r 354 38 NMR NMR NNP cord-001734-bbeznd3r 354 39 Intrinsically intrinsically RB cord-001734-bbeznd3r 354 40 unstructured unstructured JJ cord-001734-bbeznd3r 354 41 proteins protein NNS cord-001734-bbeznd3r 354 42 and and CC cord-001734-bbeznd3r 354 43 their -PRON- PRP$ cord-001734-bbeznd3r 354 44 functions function NNS cord-001734-bbeznd3r 354 45 Intrinsically intrinsically RB cord-001734-bbeznd3r 354 46 unstructured unstructured JJ cord-001734-bbeznd3r 354 47 proteins protein NNS cord-001734-bbeznd3r 354 48 Classification Classification NNP cord-001734-bbeznd3r 354 49 of of IN cord-001734-bbeznd3r 354 50 intrinsically intrinsically RB cord-001734-bbeznd3r 354 51 disordered disordered JJ cord-001734-bbeznd3r 354 52 regions region NNS cord-001734-bbeznd3r 354 53 and and CC cord-001734-bbeznd3r 354 54 proteins protein NNS cord-001734-bbeznd3r 354 55 Extended extend VBN cord-001734-bbeznd3r 354 56 disordered disordered JJ cord-001734-bbeznd3r 354 57 proteins protein NNS cord-001734-bbeznd3r 354 58 : : : cord-001734-bbeznd3r 354 59 targeting target VBG cord-001734-bbeznd3r 354 60 function function NN cord-001734-bbeznd3r 354 61 with with IN cord-001734-bbeznd3r 354 62 less less JJR cord-001734-bbeznd3r 354 63 scaffold scaffold NN cord-001734-bbeznd3r 354 64 Backbone backbone NN cord-001734-bbeznd3r 354 65 dynamics dynamic NNS cord-001734-bbeznd3r 354 66 of of IN cord-001734-bbeznd3r 354 67 a a DT cord-001734-bbeznd3r 354 68 free free JJ cord-001734-bbeznd3r 354 69 and and CC cord-001734-bbeznd3r 354 70 phosphopeptide phosphopeptide JJ cord-001734-bbeznd3r 354 71 - - HYPH cord-001734-bbeznd3r 354 72 complexed complexe VBN cord-001734-bbeznd3r 354 73 Src Src NNP cord-001734-bbeznd3r 354 74 homology homology NN cord-001734-bbeznd3r 354 75 2 2 CD cord-001734-bbeznd3r 354 76 domain domain NN cord-001734-bbeznd3r 354 77 studied study VBN cord-001734-bbeznd3r 354 78 by by IN cord-001734-bbeznd3r 354 79 15N 15n CD cord-001734-bbeznd3r 354 80 NMR NMR NNP cord-001734-bbeznd3r 354 81 relaxation relaxation NN cord-001734-bbeznd3r 354 82 Distance distance NN cord-001734-bbeznd3r 354 83 information information NN cord-001734-bbeznd3r 354 84 for for IN cord-001734-bbeznd3r 354 85 disordered disordered JJ cord-001734-bbeznd3r 354 86 proteins protein NNS cord-001734-bbeznd3r 354 87 from from IN cord-001734-bbeznd3r 354 88 NMR NMR NNP cord-001734-bbeznd3r 354 89 and and CC cord-001734-bbeznd3r 354 90 ESR ESR NNP cord-001734-bbeznd3r 354 91 measurements measurement NNS cord-001734-bbeznd3r 354 92 using use VBG cord-001734-bbeznd3r 354 93 paramagnetic paramagnetic JJ cord-001734-bbeznd3r 354 94 spin spin NN cord-001734-bbeznd3r 354 95 labels label VBZ cord-001734-bbeznd3r 354 96 A a DT cord-001734-bbeznd3r 354 97 gradual gradual JJ cord-001734-bbeznd3r 354 98 disruption disruption NN cord-001734-bbeznd3r 354 99 of of IN cord-001734-bbeznd3r 354 100 tight tight JJ cord-001734-bbeznd3r 354 101 side side JJ cord-001734-bbeznd3r 354 102 - - HYPH cord-001734-bbeznd3r 354 103 chain chain NN cord-001734-bbeznd3r 354 104 packing packing NN cord-001734-bbeznd3r 354 105 : : : cord-001734-bbeznd3r 355 1 2D 2D NNP cord-001734-bbeznd3r 355 2 1H 1H NNP cord-001734-bbeznd3r 355 3 - - HYPH cord-001734-bbeznd3r 355 4 NMR nmr NN cord-001734-bbeznd3r 355 5 characterization characterization NN cord-001734-bbeznd3r 355 6 of of IN cord-001734-bbeznd3r 355 7 acid acid NN cord-001734-bbeznd3r 355 8 - - HYPH cord-001734-bbeznd3r 355 9 induced induce VBN cord-001734-bbeznd3r 355 10 unfolding unfolding NN cord-001734-bbeznd3r 355 11 of of IN cord-001734-bbeznd3r 355 12 CHABII CHABII NNP cord-001734-bbeznd3r 355 13 Molecular Molecular NNP cord-001734-bbeznd3r 355 14 mechanism mechanism NN cord-001734-bbeznd3r 355 15 underlying underlie VBG cord-001734-bbeznd3r 355 16 the the DT cord-001734-bbeznd3r 355 17 thermal thermal JJ cord-001734-bbeznd3r 355 18 stability stability NN cord-001734-bbeznd3r 355 19 and and CC cord-001734-bbeznd3r 355 20 pH ph NN cord-001734-bbeznd3r 355 21 - - HYPH cord-001734-bbeznd3r 355 22 induced induce VBN cord-001734-bbeznd3r 355 23 unfolding unfolding NN cord-001734-bbeznd3r 355 24 of of IN cord-001734-bbeznd3r 355 25 CHABII CHABII NNP cord-001734-bbeznd3r 355 26 Mechanism Mechanism NNP cord-001734-bbeznd3r 355 27 for for IN cord-001734-bbeznd3r 355 28 transforming transform VBG cord-001734-bbeznd3r 355 29 cytosolic cytosolic JJ cord-001734-bbeznd3r 355 30 SOD1 SOD1 NNP cord-001734-bbeznd3r 355 31 into into IN cord-001734-bbeznd3r 355 32 integral integral JJ cord-001734-bbeznd3r 355 33 membrane membrane NN cord-001734-bbeznd3r 355 34 proteins protein NNS cord-001734-bbeznd3r 355 35 of of IN cord-001734-bbeznd3r 355 36 organelles organelle NNS cord-001734-bbeznd3r 355 37 by by IN cord-001734-bbeznd3r 355 38 ALS als NN cord-001734-bbeznd3r 355 39 - - HYPH cord-001734-bbeznd3r 355 40 causing cause VBG cord-001734-bbeznd3r 355 41 mutations mutation NNS cord-001734-bbeznd3r 356 1 Viral viral JJ cord-001734-bbeznd3r 356 2 proteases protease NNS cord-001734-bbeznd3r 357 1 The the DT cord-001734-bbeznd3r 357 2 design design NN cord-001734-bbeznd3r 357 3 of of IN cord-001734-bbeznd3r 357 4 drugs drug NNS cord-001734-bbeznd3r 357 5 for for IN cord-001734-bbeznd3r 357 6 HIV HIV NNP cord-001734-bbeznd3r 357 7 and and CC cord-001734-bbeznd3r 357 8 HCV HCV NNP cord-001734-bbeznd3r 357 9 New New NNP cord-001734-bbeznd3r 357 10 Merck Merck NNP cord-001734-bbeznd3r 357 11 and and CC cord-001734-bbeznd3r 357 12 Vertex Vertex NNP cord-001734-bbeznd3r 357 13 drugs drug NNS cord-001734-bbeznd3r 357 14 raise raise VBP cord-001734-bbeznd3r 357 15 standard standard NN cord-001734-bbeznd3r 357 16 of of IN cord-001734-bbeznd3r 357 17 care care NN cord-001734-bbeznd3r 357 18 in in IN cord-001734-bbeznd3r 357 19 hepatitis hepatitis NN cord-001734-bbeznd3r 357 20 C C NNP cord-001734-bbeznd3r 357 21 Allosteric Allosteric NNP cord-001734-bbeznd3r 357 22 inhibition inhibition NN cord-001734-bbeznd3r 357 23 of of IN cord-001734-bbeznd3r 357 24 the the DT cord-001734-bbeznd3r 357 25 NS2B NS2B NNP cord-001734-bbeznd3r 357 26 - - : cord-001734-bbeznd3r 357 27 NS3 ns3 RB cord-001734-bbeznd3r 357 28 protease protease VBP cord-001734-bbeznd3r 357 29 from from IN cord-001734-bbeznd3r 357 30 dengue dengue NN cord-001734-bbeznd3r 357 31 virus virus NN cord-001734-bbeznd3r 357 32 Dissection dissection NN cord-001734-bbeznd3r 357 33 study study NN cord-001734-bbeznd3r 357 34 on on IN cord-001734-bbeznd3r 357 35 the the DT cord-001734-bbeznd3r 357 36 severe severe JJ cord-001734-bbeznd3r 357 37 acute acute JJ cord-001734-bbeznd3r 357 38 respiratory respiratory JJ cord-001734-bbeznd3r 357 39 syndrome syndrome NN cord-001734-bbeznd3r 358 1 3C 3c NN cord-001734-bbeznd3r 358 2 - - HYPH cord-001734-bbeznd3r 358 3 like like JJ cord-001734-bbeznd3r 358 4 protease protease NN cord-001734-bbeznd3r 358 5 reveals reveal VBZ cord-001734-bbeznd3r 358 6 the the DT cord-001734-bbeznd3r 358 7 critical critical JJ cord-001734-bbeznd3r 358 8 role role NN cord-001734-bbeznd3r 358 9 of of IN cord-001734-bbeznd3r 358 10 the the DT cord-001734-bbeznd3r 358 11 extra extra JJ cord-001734-bbeznd3r 358 12 domain domain NN cord-001734-bbeznd3r 358 13 in in IN cord-001734-bbeznd3r 358 14 dimerization dimerization NN cord-001734-bbeznd3r 358 15 of of IN cord-001734-bbeznd3r 358 16 the the DT cord-001734-bbeznd3r 358 17 enzyme enzyme NN cord-001734-bbeznd3r 358 18 : : : cord-001734-bbeznd3r 358 19 defining define VBG cord-001734-bbeznd3r 358 20 the the DT cord-001734-bbeznd3r 358 21 extra extra JJ cord-001734-bbeznd3r 358 22 domain domain NN cord-001734-bbeznd3r 358 23 as as IN cord-001734-bbeznd3r 358 24 a a DT cord-001734-bbeznd3r 358 25 new new JJ cord-001734-bbeznd3r 358 26 target target NN cord-001734-bbeznd3r 358 27 for for IN cord-001734-bbeznd3r 358 28 design design NN cord-001734-bbeznd3r 358 29 of of IN cord-001734-bbeznd3r 358 30 highly highly RB cord-001734-bbeznd3r 358 31 specific specific JJ cord-001734-bbeznd3r 358 32 protease protease NN cord-001734-bbeznd3r 358 33 inhibitors inhibitor NNS cord-001734-bbeznd3r 358 34 Dengue dengue NN cord-001734-bbeznd3r 358 35 virus virus NN cord-001734-bbeznd3r 358 36 nonstructural nonstructural JJ cord-001734-bbeznd3r 358 37 protein protein NN cord-001734-bbeznd3r 358 38 3 3 CD cord-001734-bbeznd3r 358 39 redistributes redistribute VBZ cord-001734-bbeznd3r 358 40 fatty fatty JJ cord-001734-bbeznd3r 358 41 acid acid NN cord-001734-bbeznd3r 358 42 synthase synthase NN cord-001734-bbeznd3r 358 43 to to IN cord-001734-bbeznd3r 358 44 sites site NNS cord-001734-bbeznd3r 358 45 of of IN cord-001734-bbeznd3r 358 46 viral viral JJ cord-001734-bbeznd3r 358 47 replication replication NN cord-001734-bbeznd3r 358 48 and and CC cord-001734-bbeznd3r 358 49 increases increase VBZ cord-001734-bbeznd3r 358 50 cellular cellular JJ cord-001734-bbeznd3r 358 51 fatty fatty JJ cord-001734-bbeznd3r 358 52 acid acid NN cord-001734-bbeznd3r 358 53 synthesis synthesis NN cord-001734-bbeznd3r 358 54 Modification modification NN cord-001734-bbeznd3r 358 55 of of IN cord-001734-bbeznd3r 358 56 intracellular intracellular JJ cord-001734-bbeznd3r 358 57 membrane membrane NN cord-001734-bbeznd3r 358 58 structures structure NNS cord-001734-bbeznd3r 358 59 for for IN cord-001734-bbeznd3r 358 60 virus virus NN cord-001734-bbeznd3r 358 61 replication replication NN cord-001734-bbeznd3r 358 62 Organelle Organelle NNP cord-001734-bbeznd3r 358 63 - - HYPH cord-001734-bbeznd3r 358 64 like like JJ cord-001734-bbeznd3r 358 65 membrane membrane NN cord-001734-bbeznd3r 358 66 compartmentalization compartmentalization NN cord-001734-bbeznd3r 358 67 of of IN cord-001734-bbeznd3r 358 68 positive positive JJ cord-001734-bbeznd3r 358 69 - - HYPH cord-001734-bbeznd3r 358 70 strand strand NN cord-001734-bbeznd3r 358 71 RNA RNA NNP cord-001734-bbeznd3r 358 72 virus virus NN cord-001734-bbeznd3r 358 73 replication replication NN cord-001734-bbeznd3r 358 74 factories factory NNS cord-001734-bbeznd3r 359 1 Early early JJ cord-001734-bbeznd3r 359 2 dengue dengue NN cord-001734-bbeznd3r 359 3 virus virus NN cord-001734-bbeznd3r 359 4 protein protein NN cord-001734-bbeznd3r 359 5 synthesis synthesis NN cord-001734-bbeznd3r 359 6 induces induce VBZ cord-001734-bbeznd3r 359 7 extensive extensive JJ cord-001734-bbeznd3r 359 8 rearrangement rearrangement NN cord-001734-bbeznd3r 359 9 of of IN cord-001734-bbeznd3r 359 10 the the DT cord-001734-bbeznd3r 359 11 endoplasmic endoplasmic NN cord-001734-bbeznd3r 359 12 reticulum reticulum NN cord-001734-bbeznd3r 359 13 independent independent JJ cord-001734-bbeznd3r 359 14 of of IN cord-001734-bbeznd3r 359 15 the the DT cord-001734-bbeznd3r 359 16 UPR UPR NNP cord-001734-bbeznd3r 359 17 and and CC cord-001734-bbeznd3r 359 18 SREBP-2 SREBP-2 NNP cord-001734-bbeznd3r 359 19 pathway pathway NN cord-001734-bbeznd3r 359 20 Elimination Elimination NNP cord-001734-bbeznd3r 359 21 of of IN cord-001734-bbeznd3r 359 22 the the DT cord-001734-bbeznd3r 359 23 native native JJ cord-001734-bbeznd3r 359 24 structure structure NN cord-001734-bbeznd3r 359 25 and and CC cord-001734-bbeznd3r 359 26 solubility solubility NN cord-001734-bbeznd3r 359 27 of of IN cord-001734-bbeznd3r 359 28 the the DT cord-001734-bbeznd3r 359 29 hVAPB hvapb JJ cord-001734-bbeznd3r 359 30 MSP MSP NNP cord-001734-bbeznd3r 359 31 domain domain NN cord-001734-bbeznd3r 359 32 by by IN cord-001734-bbeznd3r 359 33 the the DT cord-001734-bbeznd3r 359 34 Pro56Ser Pro56Ser NNP cord-001734-bbeznd3r 359 35 mutation mutation NN cord-001734-bbeznd3r 359 36 that that WDT cord-001734-bbeznd3r 359 37 causes cause VBZ cord-001734-bbeznd3r 359 38 amyotrophic amyotrophic JJ cord-001734-bbeznd3r 359 39 lateral lateral JJ cord-001734-bbeznd3r 359 40 sclerosis sclerosis NN cord-001734-bbeznd3r 359 41 A a DT cord-001734-bbeznd3r 359 42 VAPB vapb RB cord-001734-bbeznd3r 359 43 mutant mutant NN cord-001734-bbeznd3r 359 44 linked link VBN cord-001734-bbeznd3r 359 45 to to IN cord-001734-bbeznd3r 359 46 amyotrophic amyotrophic JJ cord-001734-bbeznd3r 359 47 lateral lateral JJ cord-001734-bbeznd3r 359 48 sclerosis sclerosis NN cord-001734-bbeznd3r 359 49 generates generate VBZ cord-001734-bbeznd3r 359 50 a a DT cord-001734-bbeznd3r 359 51 novel novel JJ cord-001734-bbeznd3r 359 52 form form NN cord-001734-bbeznd3r 359 53 of of IN cord-001734-bbeznd3r 359 54 organized organized JJ cord-001734-bbeznd3r 359 55 smooth smooth JJ cord-001734-bbeznd3r 359 56 endoplasmic endoplasmic NN cord-001734-bbeznd3r 359 57 reticulum reticulum NN cord-001734-bbeznd3r 359 58 Structured structure VBN cord-001734-bbeznd3r 359 59 crowding crowding NN cord-001734-bbeznd3r 359 60 and and CC cord-001734-bbeznd3r 359 61 its -PRON- PRP$ cord-001734-bbeznd3r 359 62 effects effect NNS cord-001734-bbeznd3r 359 63 on on IN cord-001734-bbeznd3r 359 64 enzyme enzyme NN cord-001734-bbeznd3r 359 65 catalysis catalysis NN cord-001734-bbeznd3r 359 66 HIV-1 HIV-1 NNP cord-001734-bbeznd3r 359 67 protease protease NN cord-001734-bbeznd3r 359 68 folding folding NN cord-001734-bbeznd3r 359 69 and and CC cord-001734-bbeznd3r 359 70 the the DT cord-001734-bbeznd3r 359 71 design design NN cord-001734-bbeznd3r 359 72 of of IN cord-001734-bbeznd3r 359 73 drugs drug NNS cord-001734-bbeznd3r 359 74 which which WDT cord-001734-bbeznd3r 359 75 do do VBP cord-001734-bbeznd3r 359 76 not not RB cord-001734-bbeznd3r 359 77 create create VB cord-001734-bbeznd3r 359 78 resistance resistance NN cord-001734-bbeznd3r 359 79 Novel Novel NNP cord-001734-bbeznd3r 359 80 dengue dengue NN cord-001734-bbeznd3r 359 81 virus virus NN cord-001734-bbeznd3r 359 82 - - HYPH cord-001734-bbeznd3r 359 83 specific specific JJ cord-001734-bbeznd3r 359 84 NS2B NS2B NNP cord-001734-bbeznd3r 359 85 / / SYM cord-001734-bbeznd3r 359 86 NS3 ns3 RB cord-001734-bbeznd3r 359 87 protease protease NN cord-001734-bbeznd3r 359 88 inhibitor inhibitor NN cord-001734-bbeznd3r 359 89 , , , cord-001734-bbeznd3r 359 90 BP2109 BP2109 NNP cord-001734-bbeznd3r 359 91 , , , cord-001734-bbeznd3r 359 92 discovered discover VBN cord-001734-bbeznd3r 359 93 by by IN cord-001734-bbeznd3r 359 94 a a DT cord-001734-bbeznd3r 359 95 high high JJ cord-001734-bbeznd3r 359 96 - - HYPH cord-001734-bbeznd3r 359 97 throughput throughput NN cord-001734-bbeznd3r 359 98 screening screening NN cord-001734-bbeznd3r 359 99 assay assay NN cord-001734-bbeznd3r 359 100 . . . cord-001734-bbeznd3r 360 1 Antimicrob Antimicrob NNP cord-001734-bbeznd3r 360 2 Agents Agents NNPS cord-001734-bbeznd3r 360 3 Chemother Chemother NNP cord-001734-bbeznd3r 361 1 A a DT cord-001734-bbeznd3r 361 2 small small JJ cord-001734-bbeznd3r 361 3 compound compound NN cord-001734-bbeznd3r 361 4 targeting target VBG cord-001734-bbeznd3r 361 5 the the DT cord-001734-bbeznd3r 361 6 interaction interaction NN cord-001734-bbeznd3r 361 7 between between IN cord-001734-bbeznd3r 361 8 nonstructural nonstructural JJ cord-001734-bbeznd3r 361 9 proteins protein NNS cord-001734-bbeznd3r 361 10 2B 2b CD cord-001734-bbeznd3r 361 11 and and CC cord-001734-bbeznd3r 361 12 3 3 CD cord-001734-bbeznd3r 361 13 inhibits inhibit VBZ cord-001734-bbeznd3r 361 14 dengue dengue NN cord-001734-bbeznd3r 361 15 virus virus NN cord-001734-bbeznd3r 361 16 replication replication NN