id sid tid token lemma pos cord-000248-zueoyesj 1 1 key key JJ cord-000248-zueoyesj 1 2 : : : cord-000248-zueoyesj 1 3 cord-000248-zueoyesj cord-000248-zueoyesj . cord-000248-zueoyesj 2 1 authors author NNS cord-000248-zueoyesj 2 2 : : : cord-000248-zueoyesj 2 3 Berretta Berretta NNP cord-000248-zueoyesj 2 4 , , , cord-000248-zueoyesj 2 5 Regina Regina NNP cord-000248-zueoyesj 2 6 ; ; : cord-000248-zueoyesj 2 7 Moscato Moscato NNP cord-000248-zueoyesj 2 8 , , , cord-000248-zueoyesj 2 9 Pablo Pablo NNP cord-000248-zueoyesj 2 10 title title NN cord-000248-zueoyesj 2 11 : : : cord-000248-zueoyesj 2 12 Cancer Cancer NNP cord-000248-zueoyesj 2 13 Biomarker Biomarker NNP cord-000248-zueoyesj 2 14 Discovery Discovery NNP cord-000248-zueoyesj 2 15 : : : cord-000248-zueoyesj 3 1 The the DT cord-000248-zueoyesj 3 2 Entropic entropic JJ cord-000248-zueoyesj 3 3 Hallmark Hallmark NNP cord-000248-zueoyesj 3 4 date date NN cord-000248-zueoyesj 3 5 : : : cord-000248-zueoyesj 3 6 2010 2010 CD cord-000248-zueoyesj 3 7 - - SYM cord-000248-zueoyesj 3 8 08 08 CD cord-000248-zueoyesj 3 9 - - SYM cord-000248-zueoyesj 3 10 18 18 CD cord-000248-zueoyesj 3 11 journal journal NN cord-000248-zueoyesj 3 12 : : : cord-000248-zueoyesj 4 1 PLoS PLoS NNP cord-000248-zueoyesj 5 1 One one CD cord-000248-zueoyesj 5 2 DOI doi NN cord-000248-zueoyesj 5 3 : : : cord-000248-zueoyesj 6 1 10.1371 10.1371 CD cord-000248-zueoyesj 6 2 / / SYM cord-000248-zueoyesj 6 3 journal.pone.0012262 journal.pone.0012262 NNP cord-000248-zueoyesj 6 4 sha sha NNP cord-000248-zueoyesj 6 5 : : : cord-000248-zueoyesj 7 1 ab371ed38caa53c720fd4c0333e1bf4de84550f1 ab371ed38caa53c720fd4c0333e1bf4de84550f1 NNP cord-000248-zueoyesj 7 2 doc_id doc_id CD cord-000248-zueoyesj 7 3 : : : cord-000248-zueoyesj 7 4 248 248 CD cord-000248-zueoyesj 7 5 cord_uid cord_uid NNS cord-000248-zueoyesj 7 6 : : : cord-000248-zueoyesj 8 1 zueoyesj zueoyesj NNP cord-000248-zueoyesj 8 2 BACKGROUND BACKGROUND NNP cord-000248-zueoyesj 8 3 : : : cord-000248-zueoyesj 9 1 It -PRON- PRP cord-000248-zueoyesj 9 2 is be VBZ cord-000248-zueoyesj 9 3 a a DT cord-000248-zueoyesj 9 4 commonly commonly RB cord-000248-zueoyesj 9 5 accepted accept VBN cord-000248-zueoyesj 9 6 belief belief NN cord-000248-zueoyesj 9 7 that that IN cord-000248-zueoyesj 9 8 cancer cancer NN cord-000248-zueoyesj 9 9 cells cell NNS cord-000248-zueoyesj 9 10 modify modify VBP cord-000248-zueoyesj 9 11 their -PRON- PRP$ cord-000248-zueoyesj 9 12 transcriptional transcriptional JJ cord-000248-zueoyesj 9 13 state state NN cord-000248-zueoyesj 9 14 during during IN cord-000248-zueoyesj 9 15 the the DT cord-000248-zueoyesj 9 16 progression progression NN cord-000248-zueoyesj 9 17 of of IN cord-000248-zueoyesj 9 18 the the DT cord-000248-zueoyesj 9 19 disease disease NN cord-000248-zueoyesj 9 20 . . . cord-000248-zueoyesj 10 1 We -PRON- PRP cord-000248-zueoyesj 10 2 propose propose VBP cord-000248-zueoyesj 10 3 that that IN cord-000248-zueoyesj 10 4 the the DT cord-000248-zueoyesj 10 5 progression progression NN cord-000248-zueoyesj 10 6 of of IN cord-000248-zueoyesj 10 7 cancer cancer NN cord-000248-zueoyesj 10 8 cells cell NNS cord-000248-zueoyesj 10 9 towards towards IN cord-000248-zueoyesj 10 10 malignant malignant JJ cord-000248-zueoyesj 10 11 phenotypes phenotype NNS cord-000248-zueoyesj 10 12 can can MD cord-000248-zueoyesj 10 13 be be VB cord-000248-zueoyesj 10 14 efficiently efficiently RB cord-000248-zueoyesj 10 15 tracked track VBN cord-000248-zueoyesj 10 16 using use VBG cord-000248-zueoyesj 10 17 high high JJ cord-000248-zueoyesj 10 18 - - HYPH cord-000248-zueoyesj 10 19 throughput throughput NN cord-000248-zueoyesj 10 20 technologies technology NNS cord-000248-zueoyesj 10 21 that that WDT cord-000248-zueoyesj 10 22 follow follow VBP cord-000248-zueoyesj 10 23 the the DT cord-000248-zueoyesj 10 24 gradual gradual JJ cord-000248-zueoyesj 10 25 changes change NNS cord-000248-zueoyesj 10 26 observed observe VBN cord-000248-zueoyesj 10 27 in in IN cord-000248-zueoyesj 10 28 the the DT cord-000248-zueoyesj 10 29 gene gene NN cord-000248-zueoyesj 10 30 expression expression NN cord-000248-zueoyesj 10 31 profiles profile NNS cord-000248-zueoyesj 10 32 by by IN cord-000248-zueoyesj 10 33 employing employ VBG cord-000248-zueoyesj 10 34 Shannon Shannon NNP cord-000248-zueoyesj 10 35 's 's POS cord-000248-zueoyesj 10 36 mathematical mathematical JJ cord-000248-zueoyesj 10 37 theory theory NN cord-000248-zueoyesj 10 38 of of IN cord-000248-zueoyesj 10 39 communication communication NN cord-000248-zueoyesj 10 40 . . . cord-000248-zueoyesj 11 1 Methods method NNS cord-000248-zueoyesj 11 2 based base VBN cord-000248-zueoyesj 11 3 on on IN cord-000248-zueoyesj 11 4 Information Information NNP cord-000248-zueoyesj 11 5 Theory Theory NNP cord-000248-zueoyesj 11 6 can can MD cord-000248-zueoyesj 11 7 then then RB cord-000248-zueoyesj 11 8 quantify quantify VB cord-000248-zueoyesj 11 9 the the DT cord-000248-zueoyesj 11 10 divergence divergence NN cord-000248-zueoyesj 11 11 of of IN cord-000248-zueoyesj 11 12 cancer cancer NN cord-000248-zueoyesj 11 13 cells cell NNS cord-000248-zueoyesj 11 14 ' ' POS cord-000248-zueoyesj 11 15 transcriptional transcriptional JJ cord-000248-zueoyesj 11 16 profiles profile NNS cord-000248-zueoyesj 11 17 from from IN cord-000248-zueoyesj 11 18 those those DT cord-000248-zueoyesj 11 19 of of IN cord-000248-zueoyesj 11 20 normally normally RB cord-000248-zueoyesj 11 21 appearing appear VBG cord-000248-zueoyesj 11 22 cells cell NNS cord-000248-zueoyesj 11 23 of of IN cord-000248-zueoyesj 11 24 the the DT cord-000248-zueoyesj 11 25 originating originate VBG cord-000248-zueoyesj 11 26 tissues tissue NNS cord-000248-zueoyesj 11 27 . . . cord-000248-zueoyesj 12 1 The the DT cord-000248-zueoyesj 12 2 relevance relevance NN cord-000248-zueoyesj 12 3 of of IN cord-000248-zueoyesj 12 4 the the DT cord-000248-zueoyesj 12 5 proposed propose VBN cord-000248-zueoyesj 12 6 methods method NNS cord-000248-zueoyesj 12 7 can can MD cord-000248-zueoyesj 12 8 be be VB cord-000248-zueoyesj 12 9 evaluated evaluate VBN cord-000248-zueoyesj 12 10 using use VBG cord-000248-zueoyesj 12 11 microarray microarray NN cord-000248-zueoyesj 12 12 datasets dataset NNS cord-000248-zueoyesj 12 13 available available JJ cord-000248-zueoyesj 12 14 in in IN cord-000248-zueoyesj 12 15 the the DT cord-000248-zueoyesj 12 16 public public JJ cord-000248-zueoyesj 12 17 domain domain NN cord-000248-zueoyesj 12 18 but but CC cord-000248-zueoyesj 12 19 the the DT cord-000248-zueoyesj 12 20 method method NN cord-000248-zueoyesj 12 21 is be VBZ cord-000248-zueoyesj 12 22 in in IN cord-000248-zueoyesj 12 23 principle principle NN cord-000248-zueoyesj 12 24 applicable applicable JJ cord-000248-zueoyesj 12 25 to to IN cord-000248-zueoyesj 12 26 other other JJ cord-000248-zueoyesj 12 27 high high JJ cord-000248-zueoyesj 12 28 - - HYPH cord-000248-zueoyesj 12 29 throughput throughput NN cord-000248-zueoyesj 12 30 methods method NNS cord-000248-zueoyesj 12 31 . . . cord-000248-zueoyesj 13 1 METHODOLOGY methodology NN cord-000248-zueoyesj 13 2 / / SYM cord-000248-zueoyesj 13 3 PRINCIPAL principal NN cord-000248-zueoyesj 13 4 FINDINGS finding NNS cord-000248-zueoyesj 13 5 : : : cord-000248-zueoyesj 14 1 Using use VBG cord-000248-zueoyesj 14 2 melanoma melanoma NN cord-000248-zueoyesj 14 3 and and CC cord-000248-zueoyesj 14 4 prostate prostate NN cord-000248-zueoyesj 14 5 cancer cancer NN cord-000248-zueoyesj 14 6 datasets dataset NNS cord-000248-zueoyesj 14 7 we -PRON- PRP cord-000248-zueoyesj 14 8 illustrate illustrate VBP cord-000248-zueoyesj 14 9 how how WRB cord-000248-zueoyesj 14 10 it -PRON- PRP cord-000248-zueoyesj 14 11 is be VBZ cord-000248-zueoyesj 14 12 possible possible JJ cord-000248-zueoyesj 14 13 to to TO cord-000248-zueoyesj 14 14 employ employ VB cord-000248-zueoyesj 14 15 Shannon Shannon NNP cord-000248-zueoyesj 14 16 Entropy Entropy NNP cord-000248-zueoyesj 14 17 and and CC cord-000248-zueoyesj 14 18 the the DT cord-000248-zueoyesj 14 19 Jensen Jensen NNP cord-000248-zueoyesj 14 20 - - HYPH cord-000248-zueoyesj 14 21 Shannon Shannon NNP cord-000248-zueoyesj 14 22 divergence divergence NN cord-000248-zueoyesj 14 23 to to TO cord-000248-zueoyesj 14 24 trace trace VB cord-000248-zueoyesj 14 25 the the DT cord-000248-zueoyesj 14 26 transcriptional transcriptional JJ cord-000248-zueoyesj 14 27 changes change NNS cord-000248-zueoyesj 14 28 progression progression NN cord-000248-zueoyesj 14 29 of of IN cord-000248-zueoyesj 14 30 the the DT cord-000248-zueoyesj 14 31 disease disease NN cord-000248-zueoyesj 14 32 . . . cord-000248-zueoyesj 15 1 We -PRON- PRP cord-000248-zueoyesj 15 2 establish establish VBP cord-000248-zueoyesj 15 3 how how WRB cord-000248-zueoyesj 15 4 the the DT cord-000248-zueoyesj 15 5 variations variation NNS cord-000248-zueoyesj 15 6 of of IN cord-000248-zueoyesj 15 7 these these DT cord-000248-zueoyesj 15 8 two two CD cord-000248-zueoyesj 15 9 measures measure NNS cord-000248-zueoyesj 15 10 correlate correlate VBP cord-000248-zueoyesj 15 11 with with IN cord-000248-zueoyesj 15 12 established establish VBN cord-000248-zueoyesj 15 13 biomarkers biomarker NNS cord-000248-zueoyesj 15 14 of of IN cord-000248-zueoyesj 15 15 cancer cancer NN cord-000248-zueoyesj 15 16 progression progression NN cord-000248-zueoyesj 15 17 . . . cord-000248-zueoyesj 16 1 The the DT cord-000248-zueoyesj 16 2 Information Information NNP cord-000248-zueoyesj 16 3 Theory Theory NNP cord-000248-zueoyesj 16 4 measures measure NNS cord-000248-zueoyesj 16 5 allow allow VBP cord-000248-zueoyesj 16 6 us -PRON- PRP cord-000248-zueoyesj 16 7 to to TO cord-000248-zueoyesj 16 8 identify identify VB cord-000248-zueoyesj 16 9 novel novel JJ cord-000248-zueoyesj 16 10 biomarkers biomarker NNS cord-000248-zueoyesj 16 11 for for IN cord-000248-zueoyesj 16 12 both both CC cord-000248-zueoyesj 16 13 progressive progressive JJ cord-000248-zueoyesj 16 14 and and CC cord-000248-zueoyesj 16 15 relatively relatively RB cord-000248-zueoyesj 16 16 more more RBR cord-000248-zueoyesj 16 17 sudden sudden JJ cord-000248-zueoyesj 16 18 transcriptional transcriptional JJ cord-000248-zueoyesj 16 19 changes change NNS cord-000248-zueoyesj 16 20 leading lead VBG cord-000248-zueoyesj 16 21 to to IN cord-000248-zueoyesj 16 22 malignant malignant JJ cord-000248-zueoyesj 16 23 phenotypes phenotype NNS cord-000248-zueoyesj 16 24 . . . cord-000248-zueoyesj 17 1 At at IN cord-000248-zueoyesj 17 2 the the DT cord-000248-zueoyesj 17 3 same same JJ cord-000248-zueoyesj 17 4 time time NN cord-000248-zueoyesj 17 5 , , , cord-000248-zueoyesj 17 6 the the DT cord-000248-zueoyesj 17 7 methodology methodology NN cord-000248-zueoyesj 17 8 was be VBD cord-000248-zueoyesj 17 9 able able JJ cord-000248-zueoyesj 17 10 to to TO cord-000248-zueoyesj 17 11 validate validate VB cord-000248-zueoyesj 17 12 a a DT cord-000248-zueoyesj 17 13 large large JJ cord-000248-zueoyesj 17 14 number number NN cord-000248-zueoyesj 17 15 of of IN cord-000248-zueoyesj 17 16 genes gene NNS cord-000248-zueoyesj 17 17 and and CC cord-000248-zueoyesj 17 18 processes process NNS cord-000248-zueoyesj 17 19 that that WDT cord-000248-zueoyesj 17 20 seem seem VBP cord-000248-zueoyesj 17 21 to to TO cord-000248-zueoyesj 17 22 be be VB cord-000248-zueoyesj 17 23 implicated implicate VBN cord-000248-zueoyesj 17 24 in in IN cord-000248-zueoyesj 17 25 the the DT cord-000248-zueoyesj 17 26 progression progression NN cord-000248-zueoyesj 17 27 of of IN cord-000248-zueoyesj 17 28 melanoma melanoma NN cord-000248-zueoyesj 17 29 and and CC cord-000248-zueoyesj 17 30 prostate prostate NN cord-000248-zueoyesj 17 31 cancer cancer NN cord-000248-zueoyesj 17 32 . . . cord-000248-zueoyesj 18 1 CONCLUSIONS conclusion NNS cord-000248-zueoyesj 18 2 / / SYM cord-000248-zueoyesj 18 3 SIGNIFICANCE significance NN cord-000248-zueoyesj 18 4 : : : cord-000248-zueoyesj 19 1 We -PRON- PRP cord-000248-zueoyesj 19 2 thus thus RB cord-000248-zueoyesj 19 3 present present VBP cord-000248-zueoyesj 19 4 a a DT cord-000248-zueoyesj 19 5 quantitative quantitative JJ cord-000248-zueoyesj 19 6 guiding guiding NN cord-000248-zueoyesj 19 7 rule rule NN cord-000248-zueoyesj 19 8 , , , cord-000248-zueoyesj 19 9 a a DT cord-000248-zueoyesj 19 10 new new JJ cord-000248-zueoyesj 19 11 unifying unify VBG cord-000248-zueoyesj 19 12 hallmark hallmark NN cord-000248-zueoyesj 19 13 of of IN cord-000248-zueoyesj 19 14 cancer cancer NN cord-000248-zueoyesj 19 15 : : : cord-000248-zueoyesj 19 16 the the DT cord-000248-zueoyesj 19 17 cancer cancer NN cord-000248-zueoyesj 19 18 cell cell NN cord-000248-zueoyesj 19 19 's 's POS cord-000248-zueoyesj 19 20 transcriptome transcriptome NN cord-000248-zueoyesj 19 21 changes change NNS cord-000248-zueoyesj 19 22 lead lead VBP cord-000248-zueoyesj 19 23 to to IN cord-000248-zueoyesj 19 24 measurable measurable JJ cord-000248-zueoyesj 19 25 observed observed JJ cord-000248-zueoyesj 19 26 transitions transition NNS cord-000248-zueoyesj 19 27 of of IN cord-000248-zueoyesj 19 28 Normalized Normalized NNP cord-000248-zueoyesj 19 29 Shannon Shannon NNP cord-000248-zueoyesj 19 30 Entropy Entropy NNP cord-000248-zueoyesj 19 31 values value NNS cord-000248-zueoyesj 19 32 ( ( -LRB- cord-000248-zueoyesj 19 33 as as IN cord-000248-zueoyesj 19 34 measured measure VBN cord-000248-zueoyesj 19 35 by by IN cord-000248-zueoyesj 19 36 high high JJ cord-000248-zueoyesj 19 37 - - HYPH cord-000248-zueoyesj 19 38 througput througput NN cord-000248-zueoyesj 19 39 technologies technology NNS cord-000248-zueoyesj 19 40 ) ) -RRB- cord-000248-zueoyesj 19 41 . . . cord-000248-zueoyesj 20 1 At at IN cord-000248-zueoyesj 20 2 the the DT cord-000248-zueoyesj 20 3 same same JJ cord-000248-zueoyesj 20 4 time time NN cord-000248-zueoyesj 20 5 , , , cord-000248-zueoyesj 20 6 tumor tumor NN cord-000248-zueoyesj 20 7 cells cell NNS cord-000248-zueoyesj 20 8 increment increment VBP cord-000248-zueoyesj 20 9 their -PRON- PRP$ cord-000248-zueoyesj 20 10 divergence divergence NN cord-000248-zueoyesj 20 11 from from IN cord-000248-zueoyesj 20 12 the the DT cord-000248-zueoyesj 20 13 normal normal JJ cord-000248-zueoyesj 20 14 tissue tissue NN cord-000248-zueoyesj 20 15 profile profile NN cord-000248-zueoyesj 20 16 increasing increase VBG cord-000248-zueoyesj 20 17 their -PRON- PRP$ cord-000248-zueoyesj 20 18 disorder disorder NN cord-000248-zueoyesj 20 19 via via IN cord-000248-zueoyesj 20 20 creation creation NN cord-000248-zueoyesj 20 21 of of IN cord-000248-zueoyesj 20 22 states state NNS cord-000248-zueoyesj 20 23 that that IN cord-000248-zueoyesj 20 24 we -PRON- PRP cord-000248-zueoyesj 20 25 might may MD cord-000248-zueoyesj 20 26 not not RB cord-000248-zueoyesj 20 27 directly directly RB cord-000248-zueoyesj 20 28 measure measure VB cord-000248-zueoyesj 20 29 . . . cord-000248-zueoyesj 21 1 This this DT cord-000248-zueoyesj 21 2 unifying unify VBG cord-000248-zueoyesj 21 3 hallmark hallmark NN cord-000248-zueoyesj 21 4 allows allow VBZ cord-000248-zueoyesj 21 5 , , , cord-000248-zueoyesj 21 6 via via IN cord-000248-zueoyesj 21 7 the the DT cord-000248-zueoyesj 21 8 the the DT cord-000248-zueoyesj 21 9 Jensen Jensen NNP cord-000248-zueoyesj 21 10 - - HYPH cord-000248-zueoyesj 21 11 Shannon Shannon NNP cord-000248-zueoyesj 21 12 divergence divergence NN cord-000248-zueoyesj 21 13 , , , cord-000248-zueoyesj 21 14 to to TO cord-000248-zueoyesj 21 15 identify identify VB cord-000248-zueoyesj 21 16 the the DT cord-000248-zueoyesj 21 17 arrow arrow NN cord-000248-zueoyesj 21 18 of of IN cord-000248-zueoyesj 21 19 time time NN cord-000248-zueoyesj 21 20 of of IN cord-000248-zueoyesj 21 21 the the DT cord-000248-zueoyesj 21 22 processes process NNS cord-000248-zueoyesj 21 23 from from IN cord-000248-zueoyesj 21 24 the the DT cord-000248-zueoyesj 21 25 gene gene NN cord-000248-zueoyesj 21 26 expression expression NN cord-000248-zueoyesj 21 27 profiles profile NNS cord-000248-zueoyesj 21 28 , , , cord-000248-zueoyesj 21 29 and and CC cord-000248-zueoyesj 21 30 helps help VBZ cord-000248-zueoyesj 21 31 to to TO cord-000248-zueoyesj 21 32 map map VB cord-000248-zueoyesj 21 33 the the DT cord-000248-zueoyesj 21 34 phenotypical phenotypical JJ cord-000248-zueoyesj 21 35 and and CC cord-000248-zueoyesj 21 36 molecular molecular JJ cord-000248-zueoyesj 21 37 hallmarks hallmark NNS cord-000248-zueoyesj 21 38 of of IN cord-000248-zueoyesj 21 39 specific specific JJ cord-000248-zueoyesj 21 40 cancer cancer NN cord-000248-zueoyesj 21 41 subtypes subtype NNS cord-000248-zueoyesj 21 42 . . . cord-000248-zueoyesj 22 1 The the DT cord-000248-zueoyesj 22 2 deep deep JJ cord-000248-zueoyesj 22 3 mathematical mathematical JJ cord-000248-zueoyesj 22 4 basis basis NN cord-000248-zueoyesj 22 5 of of IN cord-000248-zueoyesj 22 6 the the DT cord-000248-zueoyesj 22 7 approach approach NN cord-000248-zueoyesj 22 8 allows allow VBZ cord-000248-zueoyesj 22 9 us -PRON- PRP cord-000248-zueoyesj 22 10 to to TO cord-000248-zueoyesj 22 11 suggest suggest VB cord-000248-zueoyesj 22 12 that that IN cord-000248-zueoyesj 22 13 this this DT cord-000248-zueoyesj 22 14 principle principle NN cord-000248-zueoyesj 22 15 is be VBZ cord-000248-zueoyesj 22 16 , , , cord-000248-zueoyesj 22 17 hopefully hopefully RB cord-000248-zueoyesj 22 18 , , , cord-000248-zueoyesj 22 19 of of IN cord-000248-zueoyesj 22 20 general general JJ cord-000248-zueoyesj 22 21 applicability applicability NN cord-000248-zueoyesj 22 22 for for IN cord-000248-zueoyesj 22 23 other other JJ cord-000248-zueoyesj 22 24 diseases disease NNS cord-000248-zueoyesj 22 25 . . . cord-000248-zueoyesj 23 1 In in IN cord-000248-zueoyesj 23 2 a a DT cord-000248-zueoyesj 23 3 seminal seminal JJ cord-000248-zueoyesj 23 4 review review NN cord-000248-zueoyesj 23 5 paper paper NN cord-000248-zueoyesj 23 6 published publish VBD cord-000248-zueoyesj 23 7 nine nine CD cord-000248-zueoyesj 23 8 years year NNS cord-000248-zueoyesj 23 9 ago ago RB cord-000248-zueoyesj 23 10 , , , cord-000248-zueoyesj 23 11 Hanahan Hanahan NNP cord-000248-zueoyesj 23 12 and and CC cord-000248-zueoyesj 23 13 Weinberg Weinberg NNP cord-000248-zueoyesj 23 14 [ [ -LRB- cord-000248-zueoyesj 23 15 1 1 CD cord-000248-zueoyesj 23 16 ] ] -RRB- cord-000248-zueoyesj 23 17 introduced introduce VBD cord-000248-zueoyesj 23 18 the the DT cord-000248-zueoyesj 23 19 ' ' `` cord-000248-zueoyesj 23 20 ' ' `` cord-000248-zueoyesj 23 21 hallmarks hallmark NNS cord-000248-zueoyesj 23 22 of of IN cord-000248-zueoyesj 23 23 cancer cancer NN cord-000248-zueoyesj 23 24 ' ' '' cord-000248-zueoyesj 23 25 ' ' '' cord-000248-zueoyesj 23 26 . . . cord-000248-zueoyesj 24 1 They -PRON- PRP cord-000248-zueoyesj 24 2 are be VBP cord-000248-zueoyesj 24 3 six six CD cord-000248-zueoyesj 24 4 essential essential JJ cord-000248-zueoyesj 24 5 alterations alteration NNS cord-000248-zueoyesj 24 6 of of IN cord-000248-zueoyesj 24 7 cell cell NN cord-000248-zueoyesj 24 8 physiology physiology NN cord-000248-zueoyesj 24 9 that that WDT cord-000248-zueoyesj 24 10 generally generally RB cord-000248-zueoyesj 24 11 occur occur VBP cord-000248-zueoyesj 24 12 in in IN cord-000248-zueoyesj 24 13 cancer cancer NN cord-000248-zueoyesj 24 14 cells cell NNS cord-000248-zueoyesj 24 15 independently independently RB cord-000248-zueoyesj 24 16 of of IN cord-000248-zueoyesj 24 17 the the DT cord-000248-zueoyesj 24 18 originating originate VBG cord-000248-zueoyesj 24 19 tissue tissue NN cord-000248-zueoyesj 24 20 type type NN cord-000248-zueoyesj 24 21 . . . cord-000248-zueoyesj 25 1 They -PRON- PRP cord-000248-zueoyesj 25 2 listed list VBD cord-000248-zueoyesj 25 3 : : : cord-000248-zueoyesj 25 4 ' ' '' cord-000248-zueoyesj 25 5 ' ' `` cord-000248-zueoyesj 25 6 self self NN cord-000248-zueoyesj 25 7 - - HYPH cord-000248-zueoyesj 25 8 sufficiency sufficiency NN cord-000248-zueoyesj 25 9 in in IN cord-000248-zueoyesj 25 10 growth growth NN cord-000248-zueoyesj 25 11 signals signal NNS cord-000248-zueoyesj 25 12 , , , cord-000248-zueoyesj 25 13 insensitivity insensitivity NN cord-000248-zueoyesj 25 14 to to IN cord-000248-zueoyesj 25 15 growth growth NN cord-000248-zueoyesj 25 16 - - HYPH cord-000248-zueoyesj 25 17 inhibitory inhibitory JJ cord-000248-zueoyesj 25 18 signals signal NNS cord-000248-zueoyesj 25 19 , , , cord-000248-zueoyesj 25 20 evasion evasion NN cord-000248-zueoyesj 25 21 of of IN cord-000248-zueoyesj 25 22 the the DT cord-000248-zueoyesj 25 23 normal normal JJ cord-000248-zueoyesj 25 24 programmed program VBN cord-000248-zueoyesj 25 25 - - HYPH cord-000248-zueoyesj 25 26 cell cell NN cord-000248-zueoyesj 25 27 mechanisms mechanism NNS cord-000248-zueoyesj 25 28 ( ( -LRB- cord-000248-zueoyesj 25 29 apoptosis apoptosis NN cord-000248-zueoyesj 25 30 ) ) -RRB- cord-000248-zueoyesj 25 31 , , , cord-000248-zueoyesj 25 32 limitless limitless JJ cord-000248-zueoyesj 25 33 replicative replicative JJ cord-000248-zueoyesj 25 34 potential potential NN cord-000248-zueoyesj 25 35 , , , cord-000248-zueoyesj 25 36 sustained sustained JJ cord-000248-zueoyesj 25 37 angiogenesis angiogenesis NN cord-000248-zueoyesj 25 38 , , , cord-000248-zueoyesj 25 39 and and CC cord-000248-zueoyesj 25 40 finally finally RB cord-000248-zueoyesj 25 41 , , , cord-000248-zueoyesj 25 42 tissue tissue NN cord-000248-zueoyesj 25 43 invasion invasion NN cord-000248-zueoyesj 25 44 and and CC cord-000248-zueoyesj 25 45 metastasis metastasis NN cord-000248-zueoyesj 25 46 ' ' '' cord-000248-zueoyesj 25 47 ' ' '' cord-000248-zueoyesj 25 48 . . . cord-000248-zueoyesj 26 1 More more RBR cord-000248-zueoyesj 26 2 recently recently RB cord-000248-zueoyesj 26 3 , , , cord-000248-zueoyesj 26 4 several several JJ cord-000248-zueoyesj 26 5 researchers researcher NNS cord-000248-zueoyesj 26 6 have have VBP cord-000248-zueoyesj 26 7 advocated advocate VBN cord-000248-zueoyesj 26 8 including include VBG cord-000248-zueoyesj 26 9 ' ' `` cord-000248-zueoyesj 26 10 ' ' `` cord-000248-zueoyesj 26 11 stemness stemness NN cord-000248-zueoyesj 26 12 ' ' '' cord-000248-zueoyesj 26 13 ' ' '' cord-000248-zueoyesj 26 14 as as IN cord-000248-zueoyesj 26 15 the the DT cord-000248-zueoyesj 26 16 seventh seventh JJ cord-000248-zueoyesj 26 17 hallmark hallmark NN cord-000248-zueoyesj 26 18 of of IN cord-000248-zueoyesj 26 19 cancer cancer NN cord-000248-zueoyesj 26 20 cells cell NNS cord-000248-zueoyesj 26 21 . . . cord-000248-zueoyesj 27 1 This this DT cord-000248-zueoyesj 27 2 conclusion conclusion NN cord-000248-zueoyesj 27 3 has have VBZ cord-000248-zueoyesj 27 4 been be VBN cord-000248-zueoyesj 27 5 reached reach VBN cord-000248-zueoyesj 27 6 from from IN cord-000248-zueoyesj 27 7 the the DT cord-000248-zueoyesj 27 8 outcomes outcome NNS cord-000248-zueoyesj 27 9 of of IN cord-000248-zueoyesj 27 10 the the DT cord-000248-zueoyesj 27 11 analysis analysis NN cord-000248-zueoyesj 27 12 of of IN cord-000248-zueoyesj 27 13 high high JJ cord-000248-zueoyesj 27 14 - - HYPH cord-000248-zueoyesj 27 15 throughput throughput NN cord-000248-zueoyesj 27 16 gene gene NN cord-000248-zueoyesj 27 17 expression expression NN cord-000248-zueoyesj 27 18 datasets dataset NNS cord-000248-zueoyesj 27 19 [ [ -LRB- cord-000248-zueoyesj 27 20 2 2 CD cord-000248-zueoyesj 27 21 , , , cord-000248-zueoyesj 27 22 3 3 CD cord-000248-zueoyesj 27 23 ] ] -RRB- cord-000248-zueoyesj 27 24 . . . cord-000248-zueoyesj 28 1 The the DT cord-000248-zueoyesj 28 2 new new JJ cord-000248-zueoyesj 28 3 role role NN cord-000248-zueoyesj 28 4 of of IN cord-000248-zueoyesj 28 5 stemness stemness NNP cord-000248-zueoyesj 28 6 as as IN cord-000248-zueoyesj 28 7 a a DT cord-000248-zueoyesj 28 8 hallmark hallmark JJ cord-000248-zueoyesj 28 9 change change NN cord-000248-zueoyesj 28 10 of of IN cord-000248-zueoyesj 28 11 cancer cancer NN cord-000248-zueoyesj 28 12 cells cell NNS cord-000248-zueoyesj 28 13 is be VBZ cord-000248-zueoyesj 28 14 also also RB cord-000248-zueoyesj 28 15 supported support VBN cord-000248-zueoyesj 28 16 by by IN cord-000248-zueoyesj 28 17 the the DT cord-000248-zueoyesj 28 18 observation observation NN cord-000248-zueoyesj 28 19 that that IN cord-000248-zueoyesj 28 20 histologically histologically RB cord-000248-zueoyesj 28 21 poorly poorly RB cord-000248-zueoyesj 28 22 differentiated differentiate VBN cord-000248-zueoyesj 28 23 tumors tumor NNS cord-000248-zueoyesj 28 24 show show VBP cord-000248-zueoyesj 28 25 transcriptional transcriptional JJ cord-000248-zueoyesj 28 26 profiles profile NNS cord-000248-zueoyesj 28 27 on on IN cord-000248-zueoyesj 28 28 which which WDT cord-000248-zueoyesj 28 29 there there EX cord-000248-zueoyesj 28 30 is be VBZ cord-000248-zueoyesj 28 31 an an DT cord-000248-zueoyesj 28 32 overexpression overexpression NN cord-000248-zueoyesj 28 33 of of IN cord-000248-zueoyesj 28 34 genes gene NNS cord-000248-zueoyesj 28 35 normally normally RB cord-000248-zueoyesj 28 36 enriched enrich VBN cord-000248-zueoyesj 28 37 in in IN cord-000248-zueoyesj 28 38 embryonic embryonic JJ cord-000248-zueoyesj 28 39 stem stem NN cord-000248-zueoyesj 28 40 cells cell NNS cord-000248-zueoyesj 28 41 . . . cord-000248-zueoyesj 29 1 For for IN cord-000248-zueoyesj 29 2 example example NN cord-000248-zueoyesj 29 3 , , , cord-000248-zueoyesj 29 4 in in IN cord-000248-zueoyesj 29 5 breast breast NN cord-000248-zueoyesj 29 6 cancer cancer NN cord-000248-zueoyesj 29 7 the the DT cord-000248-zueoyesj 29 8 activation activation NN cord-000248-zueoyesj 29 9 targets target NNS cord-000248-zueoyesj 29 10 of of IN cord-000248-zueoyesj 29 11 the the DT cord-000248-zueoyesj 29 12 pluripotency pluripotency NN cord-000248-zueoyesj 29 13 markers marker NNS cord-000248-zueoyesj 29 14 like like IN cord-000248-zueoyesj 29 15 NANOG NANOG NNP cord-000248-zueoyesj 29 16 , , , cord-000248-zueoyesj 29 17 OCT4 OCT4 NNP cord-000248-zueoyesj 29 18 , , , cord-000248-zueoyesj 29 19 SOX2 SOX2 NNP cord-000248-zueoyesj 29 20 and and CC cord-000248-zueoyesj 29 21 c c NNP cord-000248-zueoyesj 29 22 - - HYPH cord-000248-zueoyesj 29 23 MYC MYC NNP cord-000248-zueoyesj 29 24 have have VBP cord-000248-zueoyesj 29 25 been be VBN cord-000248-zueoyesj 29 26 shown show VBN cord-000248-zueoyesj 29 27 to to TO cord-000248-zueoyesj 29 28 be be VB cord-000248-zueoyesj 29 29 overexpressed overexpresse VBN cord-000248-zueoyesj 29 30 in in IN cord-000248-zueoyesj 29 31 poorly poorly RB cord-000248-zueoyesj 29 32 differentiated differentiate VBN cord-000248-zueoyesj 29 33 tumors tumor NNS cord-000248-zueoyesj 29 34 in in IN cord-000248-zueoyesj 29 35 marked mark VBN cord-000248-zueoyesj 29 36 contrast contrast NN cord-000248-zueoyesj 29 37 with with IN cord-000248-zueoyesj 29 38 their -PRON- PRP$ cord-000248-zueoyesj 29 39 expression expression NN cord-000248-zueoyesj 29 40 in in IN cord-000248-zueoyesj 29 41 welldifferentiated welldifferentiated JJ cord-000248-zueoyesj 29 42 tumors tumor NNS cord-000248-zueoyesj 29 43 [ [ -LRB- cord-000248-zueoyesj 29 44 4 4 CD cord-000248-zueoyesj 29 45 ] ] -RRB- cord-000248-zueoyesj 29 46 . . . cord-000248-zueoyesj 30 1 Other other JJ cord-000248-zueoyesj 30 2 authors author NNS cord-000248-zueoyesj 30 3 suggest suggest VBP cord-000248-zueoyesj 30 4 different different JJ cord-000248-zueoyesj 30 5 hallmarks hallmark NNS cord-000248-zueoyesj 30 6 , , , cord-000248-zueoyesj 30 7 with with IN cord-000248-zueoyesj 30 8 many many JJ cord-000248-zueoyesj 30 9 papers paper NNS cord-000248-zueoyesj 30 10 pointing point VBG cord-000248-zueoyesj 30 11 alternative alternative JJ cord-000248-zueoyesj 30 12 processes process NNS cord-000248-zueoyesj 30 13 as as IN cord-000248-zueoyesj 30 14 their -PRON- PRP$ cord-000248-zueoyesj 30 15 primary primary JJ cord-000248-zueoyesj 30 16 focus focus NN cord-000248-zueoyesj 30 17 of of IN cord-000248-zueoyesj 30 18 their -PRON- PRP$ cord-000248-zueoyesj 30 19 research research NN cord-000248-zueoyesj 30 20 . . . cord-000248-zueoyesj 31 1 The the DT cord-000248-zueoyesj 31 2 difference difference NN cord-000248-zueoyesj 31 3 may may MD cord-000248-zueoyesj 31 4 stem stem VB cord-000248-zueoyesj 31 5 from from IN cord-000248-zueoyesj 31 6 the the DT cord-000248-zueoyesj 31 7 fact fact NN cord-000248-zueoyesj 31 8 that that IN cord-000248-zueoyesj 31 9 these these DT cord-000248-zueoyesj 31 10 authors author NNS cord-000248-zueoyesj 31 11 prefer prefer VBP cord-000248-zueoyesj 31 12 to to TO cord-000248-zueoyesj 31 13 cite cite VB cord-000248-zueoyesj 31 14 as as IN cord-000248-zueoyesj 31 15 ' ' '' cord-000248-zueoyesj 31 16 ' ' `` cord-000248-zueoyesj 31 17 key key JJ cord-000248-zueoyesj 31 18 hallmarks hallmark NNS cord-000248-zueoyesj 31 19 ' ' '' cord-000248-zueoyesj 31 20 ' ' `` cord-000248-zueoyesj 31 21 physiological physiological JJ cord-000248-zueoyesj 31 22 changes change NNS cord-000248-zueoyesj 31 23 which which WDT cord-000248-zueoyesj 31 24 occur occur VBP cord-000248-zueoyesj 31 25 at at IN cord-000248-zueoyesj 31 26 a a DT cord-000248-zueoyesj 31 27 ' ' '' cord-000248-zueoyesj 31 28 ' ' `` cord-000248-zueoyesj 31 29 lower low JJR cord-000248-zueoyesj 31 30 level level NN cord-000248-zueoyesj 31 31 ' ' '' cord-000248-zueoyesj 31 32 ' ' '' cord-000248-zueoyesj 31 33 scale scale NN cord-000248-zueoyesj 31 34 closer close RBR cord-000248-zueoyesj 31 35 to to IN cord-000248-zueoyesj 31 36 the the DT cord-000248-zueoyesj 31 37 molecular molecular JJ cord-000248-zueoyesj 31 38 events event NNS cord-000248-zueoyesj 31 39 . . . cord-000248-zueoyesj 32 1 These these DT cord-000248-zueoyesj 32 2 authors author NNS cord-000248-zueoyesj 32 3 cite cite VBP cord-000248-zueoyesj 32 4 , , , cord-000248-zueoyesj 32 5 for for IN cord-000248-zueoyesj 32 6 example example NN cord-000248-zueoyesj 32 7 , , , cord-000248-zueoyesj 32 8 ' ' '' cord-000248-zueoyesj 32 9 ' ' '' cord-000248-zueoyesj 32 10 mitochondrial mitochondrial JJ cord-000248-zueoyesj 32 11 dysfunction dysfunction NN cord-000248-zueoyesj 32 12 ' ' '' cord-000248-zueoyesj 32 13 ' ' '' cord-000248-zueoyesj 32 14 [ [ -LRB- cord-000248-zueoyesj 32 15 5 5 CD cord-000248-zueoyesj 32 16 , , , cord-000248-zueoyesj 32 17 6 6 CD cord-000248-zueoyesj 32 18 ] ] -RRB- cord-000248-zueoyesj 32 19 ( ( -LRB- cord-000248-zueoyesj 32 20 including include VBG cord-000248-zueoyesj 32 21 , , , cord-000248-zueoyesj 32 22 but but CC cord-000248-zueoyesj 32 23 not not RB cord-000248-zueoyesj 32 24 limited limited JJ cord-000248-zueoyesj 32 25 to to IN cord-000248-zueoyesj 32 26 ' ' '' cord-000248-zueoyesj 32 27 ' ' '' cord-000248-zueoyesj 32 28 glucose glucose NN cord-000248-zueoyesj 32 29 avidity avidity NN cord-000248-zueoyesj 32 30 ' ' '' cord-000248-zueoyesj 32 31 ' ' '' cord-000248-zueoyesj 32 32 [ [ -LRB- cord-000248-zueoyesj 32 33 7 7 CD cord-000248-zueoyesj 32 34 ] ] -RRB- cord-000248-zueoyesj 32 35 and and CC cord-000248-zueoyesj 32 36 ' ' `` cord-000248-zueoyesj 32 37 ' ' '' cord-000248-zueoyesj 32 38 a a DT cord-000248-zueoyesj 32 39 shift shift NN cord-000248-zueoyesj 32 40 in in IN cord-000248-zueoyesj 32 41 glucosemetabolism glucosemetabolism NN cord-000248-zueoyesj 32 42 from from IN cord-000248-zueoyesj 32 43 oxidative oxidative JJ cord-000248-zueoyesj 32 44 phosphorylation phosphorylation NN cord-000248-zueoyesj 32 45 to to IN cord-000248-zueoyesj 32 46 glycolysis glycolysis NN cord-000248-zueoyesj 32 47 ' ' '' cord-000248-zueoyesj 32 48 ' ' '' cord-000248-zueoyesj 32 49 [ [ -LRB- cord-000248-zueoyesj 32 50 6 6 CD cord-000248-zueoyesj 32 51 , , , cord-000248-zueoyesj 32 52 8 8 CD cord-000248-zueoyesj 32 53 ] ] -RRB- cord-000248-zueoyesj 32 54 , , , cord-000248-zueoyesj 32 55 ' ' '' cord-000248-zueoyesj 32 56 ' ' '' cord-000248-zueoyesj 32 57 altered alter VBN cord-000248-zueoyesj 32 58 glycolysis glycolysis NN cord-000248-zueoyesj 32 59 ' ' '' cord-000248-zueoyesj 32 60 ' ' '' cord-000248-zueoyesj 32 61 [ [ -LRB- cord-000248-zueoyesj 32 62 9 9 CD cord-000248-zueoyesj 32 63 ] ] -RRB- cord-000248-zueoyesj 32 64 , , , cord-000248-zueoyesj 32 65 ' ' '' cord-000248-zueoyesj 32 66 ' ' '' cord-000248-zueoyesj 32 67 altered alter VBN cord-000248-zueoyesj 32 68 bioenergetic bioenergetic JJ cord-000248-zueoyesj 32 69 function function NN cord-000248-zueoyesj 32 70 of of IN cord-000248-zueoyesj 32 71 mitochondria mitochondrion NNS cord-000248-zueoyesj 32 72 ' ' '' cord-000248-zueoyesj 32 73 ' ' '' cord-000248-zueoyesj 32 74 [ [ -LRB- cord-000248-zueoyesj 32 75 10 10 CD cord-000248-zueoyesj 32 76 ] ] -RRB- cord-000248-zueoyesj 32 77 ) ) -RRB- cord-000248-zueoyesj 32 78 , , , cord-000248-zueoyesj 32 79 ' ' '' cord-000248-zueoyesj 32 80 ' ' '' cord-000248-zueoyesj 32 81 dysregulation dysregulation NN cord-000248-zueoyesj 32 82 of of IN cord-000248-zueoyesj 32 83 cell cell NN cord-000248-zueoyesj 32 84 cycle cycle NN cord-000248-zueoyesj 32 85 and and CC cord-000248-zueoyesj 32 86 defective defective JJ cord-000248-zueoyesj 32 87 genome genome NN cord-000248-zueoyesj 32 88 - - HYPH cord-000248-zueoyesj 32 89 integrity integrity NN cord-000248-zueoyesj 32 90 checkpoints checkpoint NNS cord-000248-zueoyesj 32 91 ' ' POS cord-000248-zueoyesj 32 92 ' ' '' cord-000248-zueoyesj 32 93 [ [ -LRB- cord-000248-zueoyesj 32 94 11 11 CD cord-000248-zueoyesj 32 95 ] ] -RRB- cord-000248-zueoyesj 32 96 , , , cord-000248-zueoyesj 32 97 ' ' '' cord-000248-zueoyesj 32 98 ' ' `` cord-000248-zueoyesj 32 99 aberrant aberrant JJ cord-000248-zueoyesj 32 100 DNA dna NN cord-000248-zueoyesj 32 101 methylation methylation NN cord-000248-zueoyesj 32 102 ' ' '' cord-000248-zueoyesj 32 103 ' ' '' cord-000248-zueoyesj 32 104 [ [ -LRB- cord-000248-zueoyesj 32 105 12 12 CD cord-000248-zueoyesj 32 106 ] ] -RRB- cord-000248-zueoyesj 32 107 ( ( -LRB- cord-000248-zueoyesj 32 108 ' ' '' cord-000248-zueoyesj 32 109 ' ' '' cord-000248-zueoyesj 32 110 promoter promoter NN cord-000248-zueoyesj 32 111 hypermethylation hypermethylation NN cord-000248-zueoyesj 32 112 of of IN cord-000248-zueoyesj 32 113 hallmark hallmark JJ cord-000248-zueoyesj 32 114 cancer cancer NN cord-000248-zueoyesj 32 115 genes gene NNS cord-000248-zueoyesj 32 116 ' ' POS cord-000248-zueoyesj 32 117 ' ' '' cord-000248-zueoyesj 32 118 [ [ -LRB- cord-000248-zueoyesj 32 119 13 13 CD cord-000248-zueoyesj 32 120 ] ] -RRB- cord-000248-zueoyesj 32 121 and and CC cord-000248-zueoyesj 32 122 ' ' `` cord-000248-zueoyesj 32 123 ' ' '' cord-000248-zueoyesj 32 124 CpG CpG NNP cord-000248-zueoyesj 32 125 island island NNP cord-000248-zueoyesj 32 126 hypermethylation hypermethylation NNP cord-000248-zueoyesj 32 127 and and CC cord-000248-zueoyesj 32 128 global global JJ cord-000248-zueoyesj 32 129 genomic genomic JJ cord-000248-zueoyesj 32 130 hypomethylation hypomethylation NN cord-000248-zueoyesj 32 131 ' ' '' cord-000248-zueoyesj 32 132 ' ' '' cord-000248-zueoyesj 32 133 [ [ -LRB- cord-000248-zueoyesj 32 134 14 14 CD cord-000248-zueoyesj 32 135 ] ] -RRB- cord-000248-zueoyesj 32 136 ) ) -RRB- cord-000248-zueoyesj 32 137 , , , cord-000248-zueoyesj 32 138 ' ' '' cord-000248-zueoyesj 32 139 ' ' `` cord-000248-zueoyesj 32 140 shift shift NN cord-000248-zueoyesj 32 141 in in IN cord-000248-zueoyesj 32 142 cellular cellular JJ cord-000248-zueoyesj 32 143 metabolism metabolism NN cord-000248-zueoyesj 32 144 ' ' '' cord-000248-zueoyesj 32 145 ' ' '' cord-000248-zueoyesj 32 146 [ [ -LRB- cord-000248-zueoyesj 32 147 15 15 CD cord-000248-zueoyesj 32 148 , , , cord-000248-zueoyesj 32 149 16 16 CD cord-000248-zueoyesj 32 150 , , , cord-000248-zueoyesj 32 151 17 17 CD cord-000248-zueoyesj 32 152 ] ] -RRB- cord-000248-zueoyesj 32 153 , , , cord-000248-zueoyesj 32 154 ' ' '' cord-000248-zueoyesj 32 155 ' ' `` cord-000248-zueoyesj 32 156 regional regional JJ cord-000248-zueoyesj 32 157 hypoxia hypoxia NN cord-000248-zueoyesj 32 158 ' ' '' cord-000248-zueoyesj 32 159 ' ' '' cord-000248-zueoyesj 32 160 [ [ -LRB- cord-000248-zueoyesj 32 161 18 18 CD cord-000248-zueoyesj 32 162 ] ] -RRB- cord-000248-zueoyesj 32 163 , , , cord-000248-zueoyesj 32 164 ' ' '' cord-000248-zueoyesj 32 165 ' ' `` cord-000248-zueoyesj 32 166 microenviroment microenviroment NNP cord-000248-zueoyesj 32 167 acidosis acidosis NN cord-000248-zueoyesj 32 168 ' ' '' cord-000248-zueoyesj 32 169 ' ' '' cord-000248-zueoyesj 32 170 [ [ -LRB- cord-000248-zueoyesj 32 171 19 19 CD cord-000248-zueoyesj 32 172 ] ] -RRB- cord-000248-zueoyesj 32 173 , , , cord-000248-zueoyesj 32 174 ' ' '' cord-000248-zueoyesj 32 175 ' ' `` cord-000248-zueoyesj 32 176 abnormal abnormal JJ cord-000248-zueoyesj 32 177 microRNA microRNA NNP cord-000248-zueoyesj 32 178 regulation regulation NNP cord-000248-zueoyesj 32 179 ' ' '' cord-000248-zueoyesj 32 180 ' ' '' cord-000248-zueoyesj 32 181 [ [ -LRB- cord-000248-zueoyesj 32 182 20 20 CD cord-000248-zueoyesj 32 183 , , , cord-000248-zueoyesj 32 184 21 21 CD cord-000248-zueoyesj 32 185 ] ] -RRB- cord-000248-zueoyesj 32 186 , , , cord-000248-zueoyesj 32 187 ' ' '' cord-000248-zueoyesj 32 188 ' ' `` cord-000248-zueoyesj 32 189 aneuploidy aneuploidy NN cord-000248-zueoyesj 32 190 ' ' '' cord-000248-zueoyesj 32 191 ' ' '' cord-000248-zueoyesj 32 192 and and CC cord-000248-zueoyesj 32 193 ' ' '' cord-000248-zueoyesj 32 194 ' ' '' cord-000248-zueoyesj 32 195 chromosome chromosome NN cord-000248-zueoyesj 32 196 aberrations aberration NNS cord-000248-zueoyesj 32 197 ' ' '' cord-000248-zueoyesj 32 198 ' ' '' cord-000248-zueoyesj 32 199 [ [ -LRB- cord-000248-zueoyesj 32 200 22 22 CD cord-000248-zueoyesj 32 201 , , , cord-000248-zueoyesj 32 202 23 23 CD cord-000248-zueoyesj 32 203 , , , cord-000248-zueoyesj 32 204 24 24 CD cord-000248-zueoyesj 32 205 , , , cord-000248-zueoyesj 32 206 25 25 CD cord-000248-zueoyesj 32 207 , , , cord-000248-zueoyesj 32 208 26 26 CD cord-000248-zueoyesj 32 209 ] ] -RRB- cord-000248-zueoyesj 32 210 , , , cord-000248-zueoyesj 32 211 ' ' '' cord-000248-zueoyesj 32 212 ' ' '' cord-000248-zueoyesj 32 213 disruption disruption NN cord-000248-zueoyesj 32 214 of of IN cord-000248-zueoyesj 32 215 cellular cellular JJ cord-000248-zueoyesj 32 216 junctions junction NNS cord-000248-zueoyesj 32 217 ' ' POS cord-000248-zueoyesj 32 218 ' ' '' cord-000248-zueoyesj 32 219 [ [ -LRB- cord-000248-zueoyesj 32 220 27 27 CD cord-000248-zueoyesj 32 221 ] ] -RRB- cord-000248-zueoyesj 32 222 , , , cord-000248-zueoyesj 32 223 ' ' '' cord-000248-zueoyesj 32 224 ' ' '' cord-000248-zueoyesj 32 225 avoidance avoidance NN cord-000248-zueoyesj 32 226 of of IN cord-000248-zueoyesj 32 227 the the DT cord-000248-zueoyesj 32 228 immune immune JJ cord-000248-zueoyesj 32 229 response response NN cord-000248-zueoyesj 32 230 ' ' '' cord-000248-zueoyesj 32 231 ' ' '' cord-000248-zueoyesj 32 232 [ [ -LRB- cord-000248-zueoyesj 32 233 28 28 CD cord-000248-zueoyesj 32 234 ] ] -RRB- cord-000248-zueoyesj 32 235 , , , cord-000248-zueoyesj 32 236 ' ' '' cord-000248-zueoyesj 32 237 ' ' '' cord-000248-zueoyesj 32 238 pre pre JJ cord-000248-zueoyesj 32 239 - - JJ cord-000248-zueoyesj 32 240 existing existing JJ cord-000248-zueoyesj 32 241 chronic chronic JJ cord-000248-zueoyesj 32 242 inflammatory inflammatory JJ cord-000248-zueoyesj 32 243 conditions condition NNS cord-000248-zueoyesj 32 244 ' ' POS cord-000248-zueoyesj 32 245 ' ' '' cord-000248-zueoyesj 32 246 [ [ -LRB- cord-000248-zueoyesj 32 247 29 29 CD cord-000248-zueoyesj 32 248 , , , cord-000248-zueoyesj 32 249 30 30 CD cord-000248-zueoyesj 32 250 ] ] -RRB- cord-000248-zueoyesj 32 251 , , , cord-000248-zueoyesj 32 252 ' ' '' cord-000248-zueoyesj 32 253 ' ' `` cord-000248-zueoyesj 32 254 cancerrelated cancerrelated JJ cord-000248-zueoyesj 32 255 inflammation inflammation NN cord-000248-zueoyesj 32 256 ' ' '' cord-000248-zueoyesj 32 257 ' ' '' cord-000248-zueoyesj 32 258 [ [ -LRB- cord-000248-zueoyesj 32 259 29 29 CD cord-000248-zueoyesj 32 260 ] ] -RRB- cord-000248-zueoyesj 32 261 , , , cord-000248-zueoyesj 32 262 ' ' '' cord-000248-zueoyesj 32 263 ' ' `` cord-000248-zueoyesj 32 264 disabled disabled JJ cord-000248-zueoyesj 32 265 autophagy autophagy NN cord-000248-zueoyesj 32 266 ' ' '' cord-000248-zueoyesj 32 267 ' ' '' cord-000248-zueoyesj 32 268 [ [ -LRB- cord-000248-zueoyesj 32 269 28 28 CD cord-000248-zueoyesj 32 270 ] ] -RRB- cord-000248-zueoyesj 32 271 , , , cord-000248-zueoyesj 32 272 ' ' '' cord-000248-zueoyesj 32 273 ' ' '' cord-000248-zueoyesj 32 274 impaired impair VBN cord-000248-zueoyesj 32 275 cellular cellular JJ cord-000248-zueoyesj 32 276 senescence senescence NN cord-000248-zueoyesj 32 277 ' ' '' cord-000248-zueoyesj 32 278 ' ' '' cord-000248-zueoyesj 32 279 [ [ -LRB- cord-000248-zueoyesj 32 280 31 31 CD cord-000248-zueoyesj 32 281 ] ] -RRB- cord-000248-zueoyesj 32 282 , , , cord-000248-zueoyesj 32 283 ' ' '' cord-000248-zueoyesj 32 284 ' ' '' cord-000248-zueoyesj 32 285 altered alter VBN cord-000248-zueoyesj 32 286 NF NF NNP cord-000248-zueoyesj 32 287 - - HYPH cord-000248-zueoyesj 32 288 kappaB kappaB NNP cord-000248-zueoyesj 32 289 signalling signal VBG cord-000248-zueoyesj 32 290 ' ' '' cord-000248-zueoyesj 32 291 ' ' '' cord-000248-zueoyesj 32 292 [ [ -LRB- cord-000248-zueoyesj 32 293 32 32 CD cord-000248-zueoyesj 32 294 ] ] -RRB- cord-000248-zueoyesj 32 295 , , , cord-000248-zueoyesj 32 296 ' ' '' cord-000248-zueoyesj 32 297 ' ' '' cord-000248-zueoyesj 32 298 altered alter VBN cord-000248-zueoyesj 32 299 growth growth NN cord-000248-zueoyesj 32 300 patterns pattern NNS cord-000248-zueoyesj 32 301 , , , cord-000248-zueoyesj 32 302 not not RB cord-000248-zueoyesj 32 303 altered alter VBN cord-000248-zueoyesj 32 304 growth growth NN cord-000248-zueoyesj 32 305 per per FW cord-000248-zueoyesj 32 306 se se FW cord-000248-zueoyesj 32 307 ' ' '' cord-000248-zueoyesj 32 308 ' ' '' cord-000248-zueoyesj 32 309 [ [ -LRB- cord-000248-zueoyesj 32 310 33 33 CD cord-000248-zueoyesj 32 311 ] ] -RRB- cord-000248-zueoyesj 32 312 , , , cord-000248-zueoyesj 32 313 ' ' '' cord-000248-zueoyesj 32 314 ' ' `` cord-000248-zueoyesj 32 315 disregulated disregulate VBN cord-000248-zueoyesj 32 316 DNA dna NN cord-000248-zueoyesj 32 317 methylation methylation NN cord-000248-zueoyesj 32 318 and and CC cord-000248-zueoyesj 32 319 histone histone NN cord-000248-zueoyesj 32 320 modifications modification NNS cord-000248-zueoyesj 32 321 ' ' POS cord-000248-zueoyesj 32 322 ' ' '' cord-000248-zueoyesj 32 323 [ [ -LRB- cord-000248-zueoyesj 32 324 34 34 CD cord-000248-zueoyesj 32 325 ] ] -RRB- cord-000248-zueoyesj 32 326 , , , cord-000248-zueoyesj 32 327 ' ' '' cord-000248-zueoyesj 32 328 ' ' '' cord-000248-zueoyesj 32 329 tissue tissue NN cord-000248-zueoyesj 32 330 dedifferentiation dedifferentiation NN cord-000248-zueoyesj 32 331 ' ' '' cord-000248-zueoyesj 32 332 ' ' '' cord-000248-zueoyesj 32 333 [ [ -LRB- cord-000248-zueoyesj 32 334 35 35 CD cord-000248-zueoyesj 32 335 , , , cord-000248-zueoyesj 32 336 36 36 CD cord-000248-zueoyesj 32 337 ] ] -RRB- cord-000248-zueoyesj 32 338 , , , cord-000248-zueoyesj 32 339 and and CC cord-000248-zueoyesj 32 340 ' ' '' cord-000248-zueoyesj 32 341 ' ' '' cord-000248-zueoyesj 32 342 somatically somatically RB cord-000248-zueoyesj 32 343 heritable heritable JJ cord-000248-zueoyesj 32 344 molecular molecular JJ cord-000248-zueoyesj 32 345 alterations alteration NNS cord-000248-zueoyesj 32 346 ' ' POS cord-000248-zueoyesj 32 347 ' ' '' cord-000248-zueoyesj 32 348 [ [ -LRB- cord-000248-zueoyesj 32 349 37 37 CD cord-000248-zueoyesj 32 350 ] ] -RRB- cord-000248-zueoyesj 32 351 . . . cord-000248-zueoyesj 33 1 This this DT cord-000248-zueoyesj 33 2 research research NN cord-000248-zueoyesj 33 3 enriches enrich VBZ cord-000248-zueoyesj 33 4 the the DT cord-000248-zueoyesj 33 5 list list NN cord-000248-zueoyesj 33 6 of of IN cord-000248-zueoyesj 33 7 the the DT cord-000248-zueoyesj 33 8 most most RBS cord-000248-zueoyesj 33 9 important important JJ cord-000248-zueoyesj 33 10 cancer cancer NN cord-000248-zueoyesj 33 11 hallmarks hallmark NNS cord-000248-zueoyesj 33 12 . . . cord-000248-zueoyesj 34 1 However however RB cord-000248-zueoyesj 34 2 , , , cord-000248-zueoyesj 34 3 these these DT cord-000248-zueoyesj 34 4 physiological physiological JJ cord-000248-zueoyesj 34 5 changes change NNS cord-000248-zueoyesj 34 6 occur occur VBP cord-000248-zueoyesj 34 7 at at IN cord-000248-zueoyesj 34 8 a a DT cord-000248-zueoyesj 34 9 ' ' `` cord-000248-zueoyesj 34 10 ' ' `` cord-000248-zueoyesj 34 11 lower low JJR cord-000248-zueoyesj 34 12 ' ' '' cord-000248-zueoyesj 34 13 ' ' '' cord-000248-zueoyesj 34 14 molecular molecular JJ cord-000248-zueoyesj 34 15 level level NN cord-000248-zueoyesj 34 16 they -PRON- PRP cord-000248-zueoyesj 34 17 are be VBP cord-000248-zueoyesj 34 18 likely likely RB cord-000248-zueoyesj 34 19 related relate VBN cord-000248-zueoyesj 34 20 sub sub NN cord-000248-zueoyesj 34 21 events event NNS cord-000248-zueoyesj 34 22 of of IN cord-000248-zueoyesj 34 23 the the DT cord-000248-zueoyesj 34 24 orginial orginial JJ cord-000248-zueoyesj 34 25 seven seven CD cord-000248-zueoyesj 34 26 instead instead RB cord-000248-zueoyesj 34 27 of of IN cord-000248-zueoyesj 35 1 newly newly RB cord-000248-zueoyesj 35 2 discovered discover VBN cord-000248-zueoyesj 35 3 ' ' '' cord-000248-zueoyesj 35 4 ' ' `` cord-000248-zueoyesj 35 5 key key JJ cord-000248-zueoyesj 35 6 hallmarks hallmark NNS cord-000248-zueoyesj 35 7 ' ' '' cord-000248-zueoyesj 35 8 ' ' '' cord-000248-zueoyesj 35 9 . . . cord-000248-zueoyesj 36 1 More more RBR cord-000248-zueoyesj 36 2 recently recently RB cord-000248-zueoyesj 36 3 , , , cord-000248-zueoyesj 36 4 Luo Luo NNP cord-000248-zueoyesj 36 5 et et NNP cord-000248-zueoyesj 36 6 al al NNP cord-000248-zueoyesj 36 7 attempted attempt VBD cord-000248-zueoyesj 36 8 a a DT cord-000248-zueoyesj 36 9 ' ' `` cord-000248-zueoyesj 36 10 ' ' '' cord-000248-zueoyesj 36 11 stress stress NN cord-000248-zueoyesj 36 12 - - HYPH cord-000248-zueoyesj 36 13 based base VBN cord-000248-zueoyesj 36 14 ' ' '' cord-000248-zueoyesj 36 15 ' ' '' cord-000248-zueoyesj 36 16 description description NN cord-000248-zueoyesj 36 17 of of IN cord-000248-zueoyesj 36 18 some some DT cord-000248-zueoyesj 36 19 of of IN cord-000248-zueoyesj 36 20 the the DT cord-000248-zueoyesj 36 21 hallmarks hallmark NNS cord-000248-zueoyesj 36 22 in in IN cord-000248-zueoyesj 36 23 terms term NNS cord-000248-zueoyesj 36 24 of of IN cord-000248-zueoyesj 36 25 ' ' '' cord-000248-zueoyesj 36 26 ' ' `` cord-000248-zueoyesj 36 27 stresses stress NNS cord-000248-zueoyesj 36 28 ' ' '' cord-000248-zueoyesj 36 29 ' ' '' cord-000248-zueoyesj 36 30 ( ( -LRB- cord-000248-zueoyesj 36 31 ' ' '' cord-000248-zueoyesj 36 32 ' ' `` cord-000248-zueoyesj 36 33 DNA dna NN cord-000248-zueoyesj 36 34 damage damage NN cord-000248-zueoyesj 36 35 / / SYM cord-000248-zueoyesj 36 36 replication replication NN cord-000248-zueoyesj 36 37 stress stress NN cord-000248-zueoyesj 36 38 , , , cord-000248-zueoyesj 36 39 proteotoxic proteotoxic JJ cord-000248-zueoyesj 36 40 stress stress NN cord-000248-zueoyesj 36 41 , , , cord-000248-zueoyesj 36 42 mitotic mitotic JJ cord-000248-zueoyesj 36 43 stress stress NN cord-000248-zueoyesj 36 44 , , , cord-000248-zueoyesj 36 45 metabolic metabolic JJ cord-000248-zueoyesj 36 46 stress stress NN cord-000248-zueoyesj 36 47 , , , cord-000248-zueoyesj 36 48 and and CC cord-000248-zueoyesj 36 49 oxidative oxidative JJ cord-000248-zueoyesj 36 50 stress stress NN cord-000248-zueoyesj 36 51 ' ' '' cord-000248-zueoyesj 36 52 ' ' '' cord-000248-zueoyesj 36 53 ) ) -RRB- cord-000248-zueoyesj 36 54 [ [ -LRB- cord-000248-zueoyesj 36 55 38 38 CD cord-000248-zueoyesj 36 56 ] ] -RRB- cord-000248-zueoyesj 36 57 . . . cord-000248-zueoyesj 37 1 While while IN cord-000248-zueoyesj 37 2 this this DT cord-000248-zueoyesj 37 3 is be VBZ cord-000248-zueoyesj 37 4 an an DT cord-000248-zueoyesj 37 5 interesting interesting JJ cord-000248-zueoyesj 37 6 descriptive descriptive JJ cord-000248-zueoyesj 37 7 grouping grouping NN cord-000248-zueoyesj 37 8 , , , cord-000248-zueoyesj 37 9 it -PRON- PRP cord-000248-zueoyesj 37 10 is be VBZ cord-000248-zueoyesj 37 11 still still RB cord-000248-zueoyesj 37 12 a a DT cord-000248-zueoyesj 37 13 phenotypical phenotypical JJ cord-000248-zueoyesj 37 14 characterization characterization NN cord-000248-zueoyesj 37 15 . . . cord-000248-zueoyesj 38 1 What what WP cord-000248-zueoyesj 38 2 is be VBZ cord-000248-zueoyesj 38 3 needed need VBN cord-000248-zueoyesj 38 4 is be VBZ cord-000248-zueoyesj 38 5 a a DT cord-000248-zueoyesj 38 6 higher high JJR cord-000248-zueoyesj 38 7 level level NN cord-000248-zueoyesj 38 8 unifying unify VBG cord-000248-zueoyesj 38 9 genotypical genotypical JJ cord-000248-zueoyesj 38 10 characterization characterization NN cord-000248-zueoyesj 38 11 , , , cord-000248-zueoyesj 38 12 from from IN cord-000248-zueoyesj 38 13 which which WDT cord-000248-zueoyesj 38 14 individual individual JJ cord-000248-zueoyesj 38 15 disregulated disregulate VBN cord-000248-zueoyesj 38 16 processes process NNS cord-000248-zueoyesj 38 17 can can MD cord-000248-zueoyesj 38 18 be be VB cord-000248-zueoyesj 38 19 identified identify VBN cord-000248-zueoyesj 38 20 in in IN cord-000248-zueoyesj 38 21 a a DT cord-000248-zueoyesj 38 22 quantitative quantitative JJ cord-000248-zueoyesj 38 23 way way NN cord-000248-zueoyesj 38 24 using use VBG cord-000248-zueoyesj 38 25 the the DT cord-000248-zueoyesj 38 26 existing exist VBG cord-000248-zueoyesj 38 27 high high JJ cord-000248-zueoyesj 38 28 - - HYPH cord-000248-zueoyesj 38 29 throughput throughput NN cord-000248-zueoyesj 38 30 data datum NNS cord-000248-zueoyesj 38 31 capture capture NN cord-000248-zueoyesj 38 32 methodologies methodology NNS cord-000248-zueoyesj 38 33 . . . cord-000248-zueoyesj 39 1 It -PRON- PRP cord-000248-zueoyesj 39 2 is be VBZ cord-000248-zueoyesj 39 3 clear clear JJ cord-000248-zueoyesj 39 4 that that IN cord-000248-zueoyesj 39 5 a a DT cord-000248-zueoyesj 39 6 unifying unifying JJ cord-000248-zueoyesj 39 7 hallmark hallmark NN cord-000248-zueoyesj 39 8 is be VBZ cord-000248-zueoyesj 39 9 needed need VBN cord-000248-zueoyesj 39 10 if if IN cord-000248-zueoyesj 39 11 we -PRON- PRP cord-000248-zueoyesj 39 12 aim aim VBP cord-000248-zueoyesj 39 13 at at IN cord-000248-zueoyesj 39 14 quantifying quantify VBG cord-000248-zueoyesj 39 15 the the DT cord-000248-zueoyesj 39 16 cell cell NN cord-000248-zueoyesj 39 17 's 's POS cord-000248-zueoyesj 39 18 progression progression NN cord-000248-zueoyesj 39 19 . . . cord-000248-zueoyesj 40 1 It -PRON- PRP cord-000248-zueoyesj 40 2 is be VBZ cord-000248-zueoyesj 40 3 then then RB cord-000248-zueoyesj 40 4 evident evident JJ cord-000248-zueoyesj 40 5 for for IN cord-000248-zueoyesj 40 6 us -PRON- PRP cord-000248-zueoyesj 40 7 that that IN cord-000248-zueoyesj 40 8 a a DT cord-000248-zueoyesj 40 9 unifying unify VBG cord-000248-zueoyesj 40 10 mathematical mathematical JJ cord-000248-zueoyesj 40 11 formalism formalism NN cord-000248-zueoyesj 40 12 is be VBZ cord-000248-zueoyesj 40 13 necessary necessary JJ cord-000248-zueoyesj 40 14 to to TO cord-000248-zueoyesj 40 15 uncover uncover VB cord-000248-zueoyesj 40 16 the the DT cord-000248-zueoyesj 40 17 cell cell NN cord-000248-zueoyesj 40 18 transcriptome transcriptome NN cord-000248-zueoyesj 40 19 's 's POS cord-000248-zueoyesj 40 20 progression progression NN cord-000248-zueoyesj 40 21 from from IN cord-000248-zueoyesj 40 22 a a DT cord-000248-zueoyesj 40 23 normal normal JJ cord-000248-zueoyesj 40 24 to to IN cord-000248-zueoyesj 40 25 a a DT cord-000248-zueoyesj 40 26 more more RBR cord-000248-zueoyesj 40 27 malignant malignant JJ cord-000248-zueoyesj 40 28 phenotype phenotype NN cord-000248-zueoyesj 40 29 . . . cord-000248-zueoyesj 41 1 We -PRON- PRP cord-000248-zueoyesj 41 2 start start VBP cord-000248-zueoyesj 41 3 our -PRON- PRP$ cord-000248-zueoyesj 41 4 quest quest NN cord-000248-zueoyesj 41 5 assuming assume VBG cord-000248-zueoyesj 41 6 an an DT cord-000248-zueoyesj 41 7 implicit implicit JJ cord-000248-zueoyesj 41 8 working work VBG cord-000248-zueoyesj 41 9 hypothesis hypothesis NN cord-000248-zueoyesj 41 10 common common JJ cord-000248-zueoyesj 41 11 to to IN cord-000248-zueoyesj 41 12 many many JJ cord-000248-zueoyesj 41 13 research research NN cord-000248-zueoyesj 41 14 groups group NNS cord-000248-zueoyesj 41 15 around around IN cord-000248-zueoyesj 41 16 the the DT cord-000248-zueoyesj 41 17 world world NN cord-000248-zueoyesj 41 18 : : : cord-000248-zueoyesj 41 19 the the DT cord-000248-zueoyesj 41 20 macroscopic macroscopic JJ cord-000248-zueoyesj 41 21 physiological physiological JJ cord-000248-zueoyesj 41 22 changes change NNS cord-000248-zueoyesj 41 23 ( ( -LRB- cord-000248-zueoyesj 41 24 i.e. i.e. FW cord-000248-zueoyesj 41 25 Hanahan Hanahan NNP cord-000248-zueoyesj 41 26 and and CC cord-000248-zueoyesj 41 27 Weinberg Weinberg NNP cord-000248-zueoyesj 41 28 's 's POS cord-000248-zueoyesj 41 29 ' ' `` cord-000248-zueoyesj 41 30 ' ' `` cord-000248-zueoyesj 41 31 hallmarks hallmark NNS cord-000248-zueoyesj 41 32 ' ' '' cord-000248-zueoyesj 41 33 ' ' '' cord-000248-zueoyesj 41 34 ) ) -RRB- cord-000248-zueoyesj 41 35 must must MD cord-000248-zueoyesj 41 36 also also RB cord-000248-zueoyesj 41 37 correlate correlate VB cord-000248-zueoyesj 41 38 with with IN cord-000248-zueoyesj 41 39 global global JJ cord-000248-zueoyesj 41 40 alterations alteration NNS cord-000248-zueoyesj 41 41 of of IN cord-000248-zueoyesj 41 42 the the DT cord-000248-zueoyesj 41 43 molecular molecular JJ cord-000248-zueoyesj 41 44 profiles profile NNS cord-000248-zueoyesj 41 45 of of IN cord-000248-zueoyesj 41 46 gene gene NN cord-000248-zueoyesj 41 47 transcription transcription NN cord-000248-zueoyesj 41 48 . . . cord-000248-zueoyesj 42 1 It -PRON- PRP cord-000248-zueoyesj 42 2 is be VBZ cord-000248-zueoyesj 42 3 also also RB cord-000248-zueoyesj 42 4 assumed assume VBN cord-000248-zueoyesj 42 5 that that IN cord-000248-zueoyesj 42 6 the the DT cord-000248-zueoyesj 42 7 ' ' `` cord-000248-zueoyesj 42 8 ' ' `` cord-000248-zueoyesj 42 9 hallmark hallmark JJ cord-000248-zueoyesj 42 10 changes change NNS cord-000248-zueoyesj 42 11 ' ' '' cord-000248-zueoyesj 42 12 ' ' '' cord-000248-zueoyesj 42 13 occur occur VBP cord-000248-zueoyesj 42 14 along along IN cord-000248-zueoyesj 42 15 a a DT cord-000248-zueoyesj 42 16 certain certain JJ cord-000248-zueoyesj 42 17 timeline timeline NN cord-000248-zueoyesj 42 18 , , , cord-000248-zueoyesj 42 19 but but CC cord-000248-zueoyesj 42 20 that that IN cord-000248-zueoyesj 42 21 some some DT cord-000248-zueoyesj 42 22 of of IN cord-000248-zueoyesj 42 23 the the DT cord-000248-zueoyesj 42 24 sub sub NN cord-000248-zueoyesj 42 25 - - NNS cord-000248-zueoyesj 42 26 processes process NNS cord-000248-zueoyesj 42 27 discussed discuss VBN cord-000248-zueoyesj 42 28 before before RB cord-000248-zueoyesj 42 29 are be VBP cord-000248-zueoyesj 42 30 concurrent concurrent JJ cord-000248-zueoyesj 42 31 . . . cord-000248-zueoyesj 43 1 These these DT cord-000248-zueoyesj 43 2 processes process NNS cord-000248-zueoyesj 43 3 may may MD cord-000248-zueoyesj 43 4 start start VB cord-000248-zueoyesj 43 5 in in IN cord-000248-zueoyesj 43 6 a a DT cord-000248-zueoyesj 43 7 slow slow JJ cord-000248-zueoyesj 43 8 incremental incremental JJ cord-000248-zueoyesj 43 9 way way NN cord-000248-zueoyesj 43 10 with with IN cord-000248-zueoyesj 43 11 some some DT cord-000248-zueoyesj 43 12 of of IN cord-000248-zueoyesj 43 13 the the DT cord-000248-zueoyesj 43 14 major major JJ cord-000248-zueoyesj 43 15 changes change NNS cord-000248-zueoyesj 43 16 being be VBG cord-000248-zueoyesj 43 17 early early JJ cord-000248-zueoyesj 43 18 events event NNS cord-000248-zueoyesj 43 19 while while IN cord-000248-zueoyesj 43 20 others other NNS cord-000248-zueoyesj 43 21 ( ( -LRB- cord-000248-zueoyesj 43 22 e.g. e.g. RB cord-000248-zueoyesj 43 23 tissue tissue NN cord-000248-zueoyesj 43 24 invasion invasion NN cord-000248-zueoyesj 43 25 and and CC cord-000248-zueoyesj 43 26 metastasis metastasis NN cord-000248-zueoyesj 43 27 ) ) -RRB- cord-000248-zueoyesj 43 28 are be VBP cord-000248-zueoyesj 43 29 likely likely JJ cord-000248-zueoyesj 43 30 later later JJ cord-000248-zueoyesj 43 31 processes process NNS cord-000248-zueoyesj 43 32 triggered trigger VBN cord-000248-zueoyesj 43 33 by by IN cord-000248-zueoyesj 43 34 new new JJ cord-000248-zueoyesj 43 35 events event NNS cord-000248-zueoyesj 43 36 during during IN cord-000248-zueoyesj 43 37 cancer cancer NN cord-000248-zueoyesj 43 38 progression progression NN cord-000248-zueoyesj 43 39 . . . cord-000248-zueoyesj 44 1 The the DT cord-000248-zueoyesj 44 2 timeline timeline NN cord-000248-zueoyesj 44 3 is be VBZ cord-000248-zueoyesj 44 4 not not RB cord-000248-zueoyesj 44 5 explicit explicit JJ cord-000248-zueoyesj 44 6 and and CC cord-000248-zueoyesj 44 7 it -PRON- PRP cord-000248-zueoyesj 44 8 is be VBZ cord-000248-zueoyesj 44 9 also also RB cord-000248-zueoyesj 44 10 likely likely JJ cord-000248-zueoyesj 44 11 that that IN cord-000248-zueoyesj 44 12 cancer cancer NN cord-000248-zueoyesj 44 13 subtypes subtype NNS cord-000248-zueoyesj 44 14 progress progress VBP cord-000248-zueoyesj 44 15 to to IN cord-000248-zueoyesj 44 16 similar similar JJ cord-000248-zueoyesj 44 17 timelines timeline NNS cord-000248-zueoyesj 44 18 . . . cord-000248-zueoyesj 45 1 In in IN cord-000248-zueoyesj 45 2 some some DT cord-000248-zueoyesj 45 3 cases case NNS cord-000248-zueoyesj 45 4 the the DT cord-000248-zueoyesj 45 5 sequence sequence NN cord-000248-zueoyesj 45 6 of of IN cord-000248-zueoyesj 45 7 events event NNS cord-000248-zueoyesj 45 8 are be VBP cord-000248-zueoyesj 45 9 better well RBR cord-000248-zueoyesj 45 10 understood understand VBN cord-000248-zueoyesj 45 11 ( ( -LRB- cord-000248-zueoyesj 45 12 e.g. e.g. RB cord-000248-zueoyesj 45 13 some some DT cord-000248-zueoyesj 45 14 leukaemia leukaemia NN cord-000248-zueoyesj 45 15 subtypes subtype NNS cord-000248-zueoyesj 45 16 [ [ -LRB- cord-000248-zueoyesj 45 17 39 39 CD cord-000248-zueoyesj 45 18 ] ] -RRB- cord-000248-zueoyesj 45 19 ) ) -RRB- cord-000248-zueoyesj 45 20 . . . cord-000248-zueoyesj 46 1 The the DT cord-000248-zueoyesj 46 2 elicitation elicitation NN cord-000248-zueoyesj 46 3 and and CC cord-000248-zueoyesj 46 4 regulation regulation NN cord-000248-zueoyesj 46 5 of of IN cord-000248-zueoyesj 46 6 molecular molecular JJ cord-000248-zueoyesj 46 7 events event NNS cord-000248-zueoyesj 46 8 is be VBZ cord-000248-zueoyesj 46 9 likely likely JJ cord-000248-zueoyesj 46 10 to to TO cord-000248-zueoyesj 46 11 be be VB cord-000248-zueoyesj 46 12 an an DT cord-000248-zueoyesj 46 13 ongoing ongoing JJ cord-000248-zueoyesj 46 14 quest quest NN cord-000248-zueoyesj 46 15 during during IN cord-000248-zueoyesj 46 16 this this DT cord-000248-zueoyesj 46 17 century century NN cord-000248-zueoyesj 46 18 for for IN cord-000248-zueoyesj 46 19 many many JJ cord-000248-zueoyesj 46 20 types type NNS cord-000248-zueoyesj 46 21 of of IN cord-000248-zueoyesj 46 22 cancer cancer NN cord-000248-zueoyesj 46 23 . . . cord-000248-zueoyesj 47 1 It -PRON- PRP cord-000248-zueoyesj 47 2 is be VBZ cord-000248-zueoyesj 47 3 not not RB cord-000248-zueoyesj 47 4 to to TO cord-000248-zueoyesj 47 5 be be VB cord-000248-zueoyesj 47 6 assumed assume VBN cord-000248-zueoyesj 47 7 that that IN cord-000248-zueoyesj 47 8 some some DT cord-000248-zueoyesj 47 9 of of IN cord-000248-zueoyesj 47 10 the the DT cord-000248-zueoyesj 47 11 transitions transition NNS cord-000248-zueoyesj 47 12 of of IN cord-000248-zueoyesj 47 13 the the DT cord-000248-zueoyesj 47 14 transcriptome transcriptome NN cord-000248-zueoyesj 47 15 are be VBP cord-000248-zueoyesj 47 16 gradual gradual JJ cord-000248-zueoyesj 47 17 . . . cord-000248-zueoyesj 48 1 That that DT cord-000248-zueoyesj 48 2 is be VBZ cord-000248-zueoyesj 48 3 a a DT cord-000248-zueoyesj 48 4 hypothesis hypothesis NN cord-000248-zueoyesj 48 5 that that WDT cord-000248-zueoyesj 48 6 is be VBZ cord-000248-zueoyesj 48 7 unnecessary unnecessary JJ cord-000248-zueoyesj 48 8 in in IN cord-000248-zueoyesj 48 9 this this DT cord-000248-zueoyesj 48 10 study study NN cord-000248-zueoyesj 48 11 . . . cord-000248-zueoyesj 49 1 We -PRON- PRP cord-000248-zueoyesj 49 2 envision envision VBP cord-000248-zueoyesj 49 3 that that IN cord-000248-zueoyesj 49 4 the the DT cord-000248-zueoyesj 49 5 progression progression NN cord-000248-zueoyesj 49 6 of of IN cord-000248-zueoyesj 49 7 cancer cancer NN cord-000248-zueoyesj 49 8 may may MD cord-000248-zueoyesj 49 9 have have VB cord-000248-zueoyesj 49 10 ' ' `` cord-000248-zueoyesj 49 11 ' ' `` cord-000248-zueoyesj 49 12 switches switch NNS cord-000248-zueoyesj 49 13 ' ' '' cord-000248-zueoyesj 49 14 ' ' '' cord-000248-zueoyesj 49 15 , , , cord-000248-zueoyesj 49 16 with with IN cord-000248-zueoyesj 49 17 a a DT cord-000248-zueoyesj 49 18 number number NN cord-000248-zueoyesj 49 19 of of IN cord-000248-zueoyesj 49 20 concurrent concurrent JJ cord-000248-zueoyesj 49 21 converging converging JJ cord-000248-zueoyesj 49 22 events event NNS cord-000248-zueoyesj 49 23 leading lead VBG cord-000248-zueoyesj 49 24 to to IN cord-000248-zueoyesj 49 25 macroscopic macroscopic JJ cord-000248-zueoyesj 49 26 observable observable JJ cord-000248-zueoyesj 49 27 changes change NNS cord-000248-zueoyesj 49 28 in in IN cord-000248-zueoyesj 49 29 the the DT cord-000248-zueoyesj 49 30 gene gene NN cord-000248-zueoyesj 49 31 expression expression NN cord-000248-zueoyesj 49 32 profile profile NN cord-000248-zueoyesj 49 33 resulting result VBG cord-000248-zueoyesj 49 34 in in IN cord-000248-zueoyesj 49 35 dramatic dramatic JJ cord-000248-zueoyesj 49 36 variations variation NNS cord-000248-zueoyesj 49 37 of of IN cord-000248-zueoyesj 49 38 expression expression NN cord-000248-zueoyesj 49 39 patterns pattern NNS cord-000248-zueoyesj 49 40 . . . cord-000248-zueoyesj 50 1 For for IN cord-000248-zueoyesj 50 2 instance instance NN cord-000248-zueoyesj 50 3 , , , cord-000248-zueoyesj 50 4 these these DT cord-000248-zueoyesj 50 5 molecular molecular JJ cord-000248-zueoyesj 50 6 switches switch NNS cord-000248-zueoyesj 50 7 could could MD cord-000248-zueoyesj 50 8 not not RB cord-000248-zueoyesj 50 9 be be VB cord-000248-zueoyesj 50 10 characterized characterize VBN cord-000248-zueoyesj 50 11 by by IN cord-000248-zueoyesj 50 12 an an DT cord-000248-zueoyesj 50 13 ' ' `` cord-000248-zueoyesj 50 14 ' ' `` cord-000248-zueoyesj 50 15 oncogene oncogene NN cord-000248-zueoyesj 50 16 ' ' '' cord-000248-zueoyesj 50 17 ' ' '' cord-000248-zueoyesj 50 18 but but CC cord-000248-zueoyesj 50 19 by by IN cord-000248-zueoyesj 50 20 a a DT cord-000248-zueoyesj 50 21 large large JJ cord-000248-zueoyesj 50 22 number number NN cord-000248-zueoyesj 50 23 of of IN cord-000248-zueoyesj 50 24 the the DT cord-000248-zueoyesj 50 25 genes gene NNS cord-000248-zueoyesj 50 26 that that WDT cord-000248-zueoyesj 50 27 have have VBP cord-000248-zueoyesj 50 28 changed change VBN cord-000248-zueoyesj 50 29 its -PRON- PRP$ cord-000248-zueoyesj 50 30 transcriptional transcriptional JJ cord-000248-zueoyesj 50 31 state state NN cord-000248-zueoyesj 50 32 . . . cord-000248-zueoyesj 51 1 These these DT cord-000248-zueoyesj 51 2 abrupt abrupt JJ cord-000248-zueoyesj 51 3 changes change NNS cord-000248-zueoyesj 51 4 may may MD cord-000248-zueoyesj 51 5 be be VB cord-000248-zueoyesj 51 6 triggered trigger VBN cord-000248-zueoyesj 51 7 by by IN cord-000248-zueoyesj 51 8 the the DT cord-000248-zueoyesj 51 9 confluence confluence NN cord-000248-zueoyesj 51 10 of of IN cord-000248-zueoyesj 51 11 several several JJ cord-000248-zueoyesj 51 12 non non JJ cord-000248-zueoyesj 51 13 - - JJ cord-000248-zueoyesj 51 14 linear linear JJ cord-000248-zueoyesj 51 15 interactions interaction NNS cord-000248-zueoyesj 51 16 , , , cord-000248-zueoyesj 51 17 and and CC cord-000248-zueoyesj 51 18 are be VBP cord-000248-zueoyesj 51 19 likely likely JJ cord-000248-zueoyesj 51 20 to to TO cord-000248-zueoyesj 51 21 be be VB cord-000248-zueoyesj 51 22 related relate VBN cord-000248-zueoyesj 51 23 to to IN cord-000248-zueoyesj 51 24 the the DT cord-000248-zueoyesj 51 25 physiological physiological JJ cord-000248-zueoyesj 51 26 hallmarks hallmark NNS cord-000248-zueoyesj 51 27 we -PRON- PRP cord-000248-zueoyesj 51 28 refer refer VBP cord-000248-zueoyesj 51 29 to to IN cord-000248-zueoyesj 51 30 above above RB cord-000248-zueoyesj 51 31 . . . cord-000248-zueoyesj 52 1 The the DT cord-000248-zueoyesj 52 2 presence presence NN cord-000248-zueoyesj 52 3 of of IN cord-000248-zueoyesj 52 4 macroscopic macroscopic JJ cord-000248-zueoyesj 52 5 observable observable JJ cord-000248-zueoyesj 52 6 changes change NNS cord-000248-zueoyesj 52 7 that that WDT cord-000248-zueoyesj 52 8 are be VBP cord-000248-zueoyesj 52 9 computable computable JJ cord-000248-zueoyesj 52 10 from from IN cord-000248-zueoyesj 52 11 a a DT cord-000248-zueoyesj 52 12 large large JJ cord-000248-zueoyesj 52 13 number number NN cord-000248-zueoyesj 52 14 of of IN cord-000248-zueoyesj 52 15 relatively relatively RB cord-000248-zueoyesj 52 16 smaller small JJR cord-000248-zueoyesj 52 17 changes change NNS cord-000248-zueoyesj 52 18 mean mean VBP cord-000248-zueoyesj 52 19 that that IN cord-000248-zueoyesj 52 20 it -PRON- PRP cord-000248-zueoyesj 52 21 may may MD cord-000248-zueoyesj 52 22 be be VB cord-000248-zueoyesj 52 23 possible possible JJ cord-000248-zueoyesj 52 24 to to TO cord-000248-zueoyesj 52 25 find find VB cord-000248-zueoyesj 52 26 an an DT cord-000248-zueoyesj 52 27 objective objective JJ cord-000248-zueoyesj 52 28 mathematical mathematical JJ cord-000248-zueoyesj 52 29 formalism formalism NN cord-000248-zueoyesj 52 30 to to TO cord-000248-zueoyesj 52 31 infer infer VB cord-000248-zueoyesj 52 32 the the DT cord-000248-zueoyesj 52 33 turning turning NN cord-000248-zueoyesj 52 34 point point NN cord-000248-zueoyesj 52 35 at at IN cord-000248-zueoyesj 52 36 which which WDT cord-000248-zueoyesj 52 37 these these DT cord-000248-zueoyesj 52 38 radical radical JJ cord-000248-zueoyesj 52 39 changes change NNS cord-000248-zueoyesj 52 40 occur occur VBP cord-000248-zueoyesj 52 41 . . . cord-000248-zueoyesj 53 1 It -PRON- PRP cord-000248-zueoyesj 53 2 is be VBZ cord-000248-zueoyesj 53 3 then then RB cord-000248-zueoyesj 53 4 evident evident JJ cord-000248-zueoyesj 53 5 that that IN cord-000248-zueoyesj 53 6 computing compute VBG cord-000248-zueoyesj 53 7 the the DT cord-000248-zueoyesj 53 8 Jensen Jensen NNP cord-000248-zueoyesj 53 9 - - HYPH cord-000248-zueoyesj 53 10 Shannon Shannon NNP cord-000248-zueoyesj 53 11 divergences divergence NNS cord-000248-zueoyesj 53 12 , , , cord-000248-zueoyesj 53 13 the the DT cord-000248-zueoyesj 53 14 Normalized Normalized NNP cord-000248-zueoyesj 53 15 Shannon Shannon NNP cord-000248-zueoyesj 53 16 Entropy Entropy NNP cord-000248-zueoyesj 53 17 , , , cord-000248-zueoyesj 53 18 and and CC cord-000248-zueoyesj 53 19 the the DT cord-000248-zueoyesj 53 20 Statistical Statistical NNP cord-000248-zueoyesj 53 21 Complexity Complexity NNP cord-000248-zueoyesj 53 22 of of IN cord-000248-zueoyesj 53 23 samples sample NNS cord-000248-zueoyesj 53 24 reveal reveal VBP cord-000248-zueoyesj 53 25 different different JJ cord-000248-zueoyesj 53 26 global global JJ cord-000248-zueoyesj 53 27 transcriptional transcriptional JJ cord-000248-zueoyesj 53 28 changes change NNS cord-000248-zueoyesj 53 29 . . . cord-000248-zueoyesj 54 1 It -PRON- PRP cord-000248-zueoyesj 54 2 is be VBZ cord-000248-zueoyesj 54 3 , , , cord-000248-zueoyesj 54 4 however however RB cord-000248-zueoyesj 54 5 , , , cord-000248-zueoyesj 54 6 not not RB cord-000248-zueoyesj 54 7 easy easy JJ cord-000248-zueoyesj 54 8 to to TO cord-000248-zueoyesj 54 9 infer infer VB cord-000248-zueoyesj 54 10 if if IN cord-000248-zueoyesj 54 11 these these DT cord-000248-zueoyesj 54 12 changes change NNS cord-000248-zueoyesj 54 13 would would MD cord-000248-zueoyesj 54 14 correlate correlate VB cord-000248-zueoyesj 54 15 with with IN cord-000248-zueoyesj 54 16 a a DT cord-000248-zueoyesj 54 17 gradual gradual JJ cord-000248-zueoyesj 54 18 progression progression NN cord-000248-zueoyesj 54 19 or or CC cord-000248-zueoyesj 54 20 sudden sudden JJ cord-000248-zueoyesj 54 21 changes change NNS cord-000248-zueoyesj 54 22 . . . cord-000248-zueoyesj 55 1 However however RB cord-000248-zueoyesj 55 2 , , , cord-000248-zueoyesj 55 3 one one CD cord-000248-zueoyesj 55 4 valid valid JJ cord-000248-zueoyesj 55 5 mathematical mathematical JJ cord-000248-zueoyesj 55 6 possibility possibility NN cord-000248-zueoyesj 55 7 is be VBZ cord-000248-zueoyesj 55 8 that that IN cord-000248-zueoyesj 55 9 the the DT cord-000248-zueoyesj 55 10 most most RBS cord-000248-zueoyesj 55 11 important important JJ cord-000248-zueoyesj 55 12 ' ' '' cord-000248-zueoyesj 55 13 ' ' '' cord-000248-zueoyesj 55 14 hallmark hallmark NN cord-000248-zueoyesj 55 15 of of IN cord-000248-zueoyesj 55 16 cancer cancer NN cord-000248-zueoyesj 55 17 ' ' '' cord-000248-zueoyesj 55 18 ' ' '' cord-000248-zueoyesj 55 19 , , , cord-000248-zueoyesj 55 20 a a DT cord-000248-zueoyesj 55 21 unifying unifying JJ cord-000248-zueoyesj 55 22 principle principle NN cord-000248-zueoyesj 55 23 above above IN cord-000248-zueoyesj 55 24 all all DT cord-000248-zueoyesj 55 25 , , , cord-000248-zueoyesj 55 26 is be VBZ cord-000248-zueoyesj 55 27 the the DT cord-000248-zueoyesj 55 28 existence existence NN cord-000248-zueoyesj 55 29 of of IN cord-000248-zueoyesj 55 30 a a DT cord-000248-zueoyesj 55 31 measurable measurable JJ cord-000248-zueoyesj 55 32 gradual gradual JJ cord-000248-zueoyesj 55 33 ' ' '' cord-000248-zueoyesj 55 34 ' ' `` cord-000248-zueoyesj 55 35 progression progression NN cord-000248-zueoyesj 55 36 ' ' '' cord-000248-zueoyesj 55 37 ' ' '' cord-000248-zueoyesj 55 38 from from IN cord-000248-zueoyesj 55 39 a a DT cord-000248-zueoyesj 55 40 well well RB cord-000248-zueoyesj 55 41 - - HYPH cord-000248-zueoyesj 55 42 differentiated differentiate VBN cord-000248-zueoyesj 55 43 gene gene NN cord-000248-zueoyesj 55 44 expression expression NN cord-000248-zueoyesj 55 45 profile profile NN cord-000248-zueoyesj 55 46 ( ( -LRB- cord-000248-zueoyesj 55 47 corresponding correspond VBG cord-000248-zueoyesj 55 48 to to IN cord-000248-zueoyesj 55 49 a a DT cord-000248-zueoyesj 55 50 healthy healthy JJ cord-000248-zueoyesj 55 51 tissue tissue NN cord-000248-zueoyesj 55 52 ) ) -RRB- cord-000248-zueoyesj 55 53 . . . cord-000248-zueoyesj 56 1 This this DT cord-000248-zueoyesj 56 2 would would MD cord-000248-zueoyesj 56 3 reveal reveal VB cord-000248-zueoyesj 56 4 the the DT cord-000248-zueoyesj 56 5 timeline timeline NN cord-000248-zueoyesj 56 6 of of IN cord-000248-zueoyesj 56 7 a a DT cord-000248-zueoyesj 56 8 higher high JJR cord-000248-zueoyesj 56 9 level level NN cord-000248-zueoyesj 56 10 process process NN cord-000248-zueoyesj 56 11 that that WDT cord-000248-zueoyesj 56 12 is be VBZ cord-000248-zueoyesj 56 13 observable observable JJ cord-000248-zueoyesj 56 14 and and CC cord-000248-zueoyesj 56 15 measurable measurable JJ cord-000248-zueoyesj 56 16 via via IN cord-000248-zueoyesj 56 17 a a DT cord-000248-zueoyesj 56 18 change change NN cord-000248-zueoyesj 56 19 of of IN cord-000248-zueoyesj 56 20 Normalized Normalized NNP cord-000248-zueoyesj 56 21 Shannon Shannon NNP cord-000248-zueoyesj 56 22 Entropy Entropy NNP cord-000248-zueoyesj 56 23 and and CC cord-000248-zueoyesj 56 24 an an DT cord-000248-zueoyesj 56 25 increment increment NN cord-000248-zueoyesj 56 26 of of IN cord-000248-zueoyesj 56 27 Jensen Jensen NNP cord-000248-zueoyesj 56 28 - - HYPH cord-000248-zueoyesj 56 29 Shannon Shannon NNP cord-000248-zueoyesj 56 30 divergences divergence NNS cord-000248-zueoyesj 56 31 from from IN cord-000248-zueoyesj 56 32 the the DT cord-000248-zueoyesj 56 33 originating originate VBG cord-000248-zueoyesj 56 34 tissue tissue NN cord-000248-zueoyesj 56 35 type type NN cord-000248-zueoyesj 56 36 . . . cord-000248-zueoyesj 57 1 If if IN cord-000248-zueoyesj 57 2 this this DT cord-000248-zueoyesj 57 3 is be VBZ cord-000248-zueoyesj 57 4 the the DT cord-000248-zueoyesj 57 5 case case NN cord-000248-zueoyesj 57 6 , , , cord-000248-zueoyesj 57 7 by by IN cord-000248-zueoyesj 57 8 correlating correlate VBG cord-000248-zueoyesj 57 9 the the DT cord-000248-zueoyesj 57 10 changes change NNS cord-000248-zueoyesj 57 11 in in IN cord-000248-zueoyesj 57 12 Information Information NNP cord-000248-zueoyesj 57 13 Theory Theory NNP cord-000248-zueoyesj 57 14 quantifiers quantifier NNS cord-000248-zueoyesj 57 15 with with IN cord-000248-zueoyesj 57 16 the the DT cord-000248-zueoyesj 57 17 expression expression NN cord-000248-zueoyesj 57 18 of of IN cord-000248-zueoyesj 57 19 the the DT cord-000248-zueoyesj 57 20 genes gene NNS cord-000248-zueoyesj 57 21 we -PRON- PRP cord-000248-zueoyesj 57 22 would would MD cord-000248-zueoyesj 57 23 be be VB cord-000248-zueoyesj 57 24 able able JJ cord-000248-zueoyesj 57 25 to to TO cord-000248-zueoyesj 57 26 not not RB cord-000248-zueoyesj 57 27 only only RB cord-000248-zueoyesj 57 28 uncover uncover VB cord-000248-zueoyesj 57 29 useful useful JJ cord-000248-zueoyesj 57 30 biomarkers biomarker NNS cord-000248-zueoyesj 57 31 to to TO cord-000248-zueoyesj 57 32 track track VB cord-000248-zueoyesj 57 33 this this DT cord-000248-zueoyesj 57 34 progression progression NN cord-000248-zueoyesj 57 35 but but CC cord-000248-zueoyesj 57 36 to to TO cord-000248-zueoyesj 57 37 explain explain VB cord-000248-zueoyesj 57 38 the the DT cord-000248-zueoyesj 57 39 ' ' `` cord-000248-zueoyesj 57 40 ' ' `` cord-000248-zueoyesj 57 41 hallmarks hallmark NNS cord-000248-zueoyesj 57 42 ' ' '' cord-000248-zueoyesj 57 43 ' ' '' cord-000248-zueoyesj 57 44 in in IN cord-000248-zueoyesj 57 45 an an DT cord-000248-zueoyesj 57 46 ordered order VBN cord-000248-zueoyesj 57 47 timeline timeline NN cord-000248-zueoyesj 57 48 . . . cord-000248-zueoyesj 58 1 The the DT cord-000248-zueoyesj 58 2 timeline timeline NN cord-000248-zueoyesj 58 3 also also RB cord-000248-zueoyesj 58 4 yields yield VBZ cord-000248-zueoyesj 58 5 clinical clinical JJ cord-000248-zueoyesj 58 6 and and CC cord-000248-zueoyesj 58 7 translational translational JJ cord-000248-zueoyesj 58 8 important important JJ cord-000248-zueoyesj 58 9 outcomes outcome NNS cord-000248-zueoyesj 58 10 . . . cord-000248-zueoyesj 59 1 Such such JJ cord-000248-zueoyesj 59 2 analytical analytical JJ cord-000248-zueoyesj 59 3 methodology methodology NN cord-000248-zueoyesj 59 4 will will MD cord-000248-zueoyesj 59 5 naturally naturally RB cord-000248-zueoyesj 59 6 produce produce VB cord-000248-zueoyesj 59 7 ' ' '' cord-000248-zueoyesj 59 8 ' ' '' cord-000248-zueoyesj 59 9 a a DT cord-000248-zueoyesj 59 10 continuous continuous JJ cord-000248-zueoyesj 59 11 staging staging NN cord-000248-zueoyesj 59 12 ' ' '' cord-000248-zueoyesj 59 13 ' ' '' cord-000248-zueoyesj 59 14 of of IN cord-000248-zueoyesj 59 15 the the DT cord-000248-zueoyesj 59 16 cancer cancer NN cord-000248-zueoyesj 59 17 samples sample NNS cord-000248-zueoyesj 59 18 , , , cord-000248-zueoyesj 59 19 based base VBN cord-000248-zueoyesj 59 20 on on IN cord-000248-zueoyesj 59 21 a a DT cord-000248-zueoyesj 59 22 solid solid JJ cord-000248-zueoyesj 59 23 foundations foundation NNS cord-000248-zueoyesj 59 24 of of IN cord-000248-zueoyesj 59 25 Information Information NNP cord-000248-zueoyesj 59 26 Theory Theory NNP cord-000248-zueoyesj 59 27 , , , cord-000248-zueoyesj 59 28 based base VBN cord-000248-zueoyesj 59 29 on on IN cord-000248-zueoyesj 59 30 the the DT cord-000248-zueoyesj 59 31 knowledge knowledge NN cord-000248-zueoyesj 59 32 of of IN cord-000248-zueoyesj 59 33 transcriptional transcriptional JJ cord-000248-zueoyesj 59 34 profile profile NN cord-000248-zueoyesj 59 35 of of IN cord-000248-zueoyesj 59 36 healthy healthy JJ cord-000248-zueoyesj 59 37 cells cell NNS cord-000248-zueoyesj 59 38 as as IN cord-000248-zueoyesj 59 39 reference reference NN cord-000248-zueoyesj 59 40 to to TO cord-000248-zueoyesj 59 41 measure measure VB cord-000248-zueoyesj 59 42 divergences divergence NNS cord-000248-zueoyesj 59 43 . . . cord-000248-zueoyesj 60 1 In in IN cord-000248-zueoyesj 60 2 addition addition NN cord-000248-zueoyesj 60 3 , , , cord-000248-zueoyesj 60 4 as as IN cord-000248-zueoyesj 60 5 a a DT cord-000248-zueoyesj 60 6 mathematical mathematical JJ cord-000248-zueoyesj 60 7 methodology methodology NN cord-000248-zueoyesj 60 8 , , , cord-000248-zueoyesj 60 9 it -PRON- PRP cord-000248-zueoyesj 60 10 can can MD cord-000248-zueoyesj 60 11 be be VB cord-000248-zueoyesj 60 12 applied apply VBN cord-000248-zueoyesj 60 13 to to IN cord-000248-zueoyesj 60 14 other other JJ cord-000248-zueoyesj 60 15 high high JJ cord-000248-zueoyesj 60 16 - - HYPH cord-000248-zueoyesj 60 17 throughput throughput NN cord-000248-zueoyesj 60 18 technologies technology NNS cord-000248-zueoyesj 60 19 for for IN cord-000248-zueoyesj 60 20 which which WDT cord-000248-zueoyesj 60 21 a a DT cord-000248-zueoyesj 60 22 probability probability NN cord-000248-zueoyesj 60 23 distribution distribution NN cord-000248-zueoyesj 60 24 function function NN cord-000248-zueoyesj 60 25 of of IN cord-000248-zueoyesj 60 26 observed observed JJ cord-000248-zueoyesj 60 27 abundances abundance NNS cord-000248-zueoyesj 60 28 has have VBZ cord-000248-zueoyesj 60 29 been be VBN cord-000248-zueoyesj 60 30 computed compute VBN cord-000248-zueoyesj 60 31 . . . cord-000248-zueoyesj 61 1 With with IN cord-000248-zueoyesj 61 2 these these DT cord-000248-zueoyesj 61 3 ideas idea NNS cord-000248-zueoyesj 61 4 in in IN cord-000248-zueoyesj 61 5 mind mind NN cord-000248-zueoyesj 61 6 , , , cord-000248-zueoyesj 61 7 we -PRON- PRP cord-000248-zueoyesj 61 8 provide provide VBP cord-000248-zueoyesj 61 9 a a DT cord-000248-zueoyesj 61 10 ' ' `` cord-000248-zueoyesj 61 11 ' ' `` cord-000248-zueoyesj 61 12 transcriptomic transcriptomic NNP cord-000248-zueoyesj 61 13 - - HYPH cord-000248-zueoyesj 61 14 driven drive VBN cord-000248-zueoyesj 61 15 ' ' '' cord-000248-zueoyesj 61 16 ' ' '' cord-000248-zueoyesj 61 17 method method NN cord-000248-zueoyesj 61 18 revealing reveal VBG cord-000248-zueoyesj 61 19 important important JJ cord-000248-zueoyesj 61 20 biomarkers biomarker NNS cord-000248-zueoyesj 61 21 for for IN cord-000248-zueoyesj 61 22 cancer cancer NN cord-000248-zueoyesj 61 23 progression progression NN cord-000248-zueoyesj 61 24 a a DT cord-000248-zueoyesj 61 25 direction direction NN cord-000248-zueoyesj 61 26 of of IN cord-000248-zueoyesj 61 27 time time NN cord-000248-zueoyesj 61 28 for for IN cord-000248-zueoyesj 61 29 which which WDT cord-000248-zueoyesj 61 30 they -PRON- PRP cord-000248-zueoyesj 61 31 are be VBP cord-000248-zueoyesj 61 32 presented present VBN cord-000248-zueoyesj 61 33 . . . cord-000248-zueoyesj 62 1 The the DT cord-000248-zueoyesj 62 2 method method NN cord-000248-zueoyesj 62 3 , , , cord-000248-zueoyesj 62 4 however however RB cord-000248-zueoyesj 62 5 , , , cord-000248-zueoyesj 62 6 is be VBZ cord-000248-zueoyesj 62 7 generalizable generalizable JJ cord-000248-zueoyesj 62 8 to to IN cord-000248-zueoyesj 62 9 other other JJ cord-000248-zueoyesj 62 10 type type NN cord-000248-zueoyesj 62 11 of of IN cord-000248-zueoyesj 62 12 high high JJ cord-000248-zueoyesj 62 13 - - HYPH cord-000248-zueoyesj 62 14 throughtput throughtput NN cord-000248-zueoyesj 62 15 techonologies techonologie NNS cord-000248-zueoyesj 62 16 ( ( -LRB- cord-000248-zueoyesj 62 17 e.g. e.g. IN cord-000248-zueoyesj 62 18 proteomic proteomic JJ cord-000248-zueoyesj 62 19 studies study NNS cord-000248-zueoyesj 62 20 ) ) -RRB- cord-000248-zueoyesj 62 21 . . . cord-000248-zueoyesj 63 1 We -PRON- PRP cord-000248-zueoyesj 63 2 have have VBP cord-000248-zueoyesj 63 3 chosen choose VBN cord-000248-zueoyesj 63 4 two two CD cord-000248-zueoyesj 63 5 types type NNS cord-000248-zueoyesj 63 6 of of IN cord-000248-zueoyesj 63 7 cancers cancer NNS cord-000248-zueoyesj 63 8 to to TO cord-000248-zueoyesj 63 9 study study VB cord-000248-zueoyesj 63 10 which which WDT cord-000248-zueoyesj 63 11 are be VBP cord-000248-zueoyesj 63 12 almost almost RB cord-000248-zueoyesj 63 13 at at IN cord-000248-zueoyesj 63 14 the the DT cord-000248-zueoyesj 63 15 antipodes antipode NNS cord-000248-zueoyesj 63 16 in in IN cord-000248-zueoyesj 63 17 terms term NNS cord-000248-zueoyesj 63 18 of of IN cord-000248-zueoyesj 63 19 progression progression NN cord-000248-zueoyesj 63 20 rates rate NNS cord-000248-zueoyesj 63 21 : : : cord-000248-zueoyesj 63 22 prostate prostate NN cord-000248-zueoyesj 63 23 cancer cancer NN cord-000248-zueoyesj 63 24 and and CC cord-000248-zueoyesj 63 25 melanoma melanoma NN cord-000248-zueoyesj 63 26 . . . cord-000248-zueoyesj 64 1 Prostate prostate NN cord-000248-zueoyesj 64 2 cancer cancer NN cord-000248-zueoyesj 64 3 progresses progress VBZ cord-000248-zueoyesj 64 4 very very RB cord-000248-zueoyesj 64 5 slowly slowly RB cord-000248-zueoyesj 64 6 . . . cord-000248-zueoyesj 65 1 Pathological pathological JJ cord-000248-zueoyesj 65 2 samples sample NNS cord-000248-zueoyesj 65 3 are be VBP cord-000248-zueoyesj 65 4 common common JJ cord-000248-zueoyesj 65 5 in in IN cord-000248-zueoyesj 65 6 autopsies autopsy NNS cord-000248-zueoyesj 65 7 of of IN cord-000248-zueoyesj 65 8 men man NNS cord-000248-zueoyesj 65 9 as as RB cord-000248-zueoyesj 65 10 young young JJ cord-000248-zueoyesj 65 11 as as IN cord-000248-zueoyesj 65 12 20 20 CD cord-000248-zueoyesj 65 13 years year NNS cord-000248-zueoyesj 65 14 old old JJ cord-000248-zueoyesj 65 15 . . . cord-000248-zueoyesj 66 1 By by IN cord-000248-zueoyesj 66 2 the the DT cord-000248-zueoyesj 66 3 age age NN cord-000248-zueoyesj 66 4 of of IN cord-000248-zueoyesj 66 5 70 70 CD cord-000248-zueoyesj 66 6 more more JJR cord-000248-zueoyesj 66 7 than than IN cord-000248-zueoyesj 66 8 80 80 CD cord-000248-zueoyesj 66 9 % % NN cord-000248-zueoyesj 66 10 of of IN cord-000248-zueoyesj 66 11 men man NNS cord-000248-zueoyesj 66 12 have have VBP cord-000248-zueoyesj 66 13 these these DT cord-000248-zueoyesj 66 14 alterations alteration NNS cord-000248-zueoyesj 66 15 , , , cord-000248-zueoyesj 66 16 a a DT cord-000248-zueoyesj 66 17 fact fact NN cord-000248-zueoyesj 66 18 that that IN cord-000248-zueoyesj 66 19 already already RB cord-000248-zueoyesj 66 20 shows show VBZ cord-000248-zueoyesj 66 21 a a DT cord-000248-zueoyesj 66 22 relationship relationship NN cord-000248-zueoyesj 66 23 of of IN cord-000248-zueoyesj 66 24 this this DT cord-000248-zueoyesj 66 25 cancer cancer NN cord-000248-zueoyesj 66 26 type type NN cord-000248-zueoyesj 66 27 with with IN cord-000248-zueoyesj 66 28 increasing increase VBG cord-000248-zueoyesj 66 29 age age NN cord-000248-zueoyesj 66 30 . . . cord-000248-zueoyesj 67 1 The the DT cord-000248-zueoyesj 67 2 clinical clinical JJ cord-000248-zueoyesj 67 3 management management NN cord-000248-zueoyesj 67 4 of of IN cord-000248-zueoyesj 67 5 prostate prostate NN cord-000248-zueoyesj 67 6 cancer cancer NN cord-000248-zueoyesj 67 7 requires require VBZ cord-000248-zueoyesj 67 8 the the DT cord-000248-zueoyesj 67 9 identification identification NN cord-000248-zueoyesj 67 10 of of IN cord-000248-zueoyesj 67 11 the the DT cord-000248-zueoyesj 67 12 so so RB cord-000248-zueoyesj 67 13 - - HYPH cord-000248-zueoyesj 67 14 called call VBN cord-000248-zueoyesj 67 15 Gleason Gleason NNP cord-000248-zueoyesj 67 16 patterns pattern NNS cord-000248-zueoyesj 67 17 in in IN cord-000248-zueoyesj 67 18 the the DT cord-000248-zueoyesj 67 19 biopsies biopsy NNS cord-000248-zueoyesj 67 20 [ [ -LRB- cord-000248-zueoyesj 67 21 40 40 CD cord-000248-zueoyesj 67 22 ] ] -RRB- cord-000248-zueoyesj 67 23 , , , cord-000248-zueoyesj 67 24 which which WDT cord-000248-zueoyesj 67 25 after after IN cord-000248-zueoyesj 67 26 almost almost RB cord-000248-zueoyesj 67 27 fifty fifty CD cord-000248-zueoyesj 67 28 years year NNS cord-000248-zueoyesj 67 29 is be VBZ cord-000248-zueoyesj 67 30 still still RB cord-000248-zueoyesj 67 31 ' ' `` cord-000248-zueoyesj 67 32 ' ' '' cord-000248-zueoyesj 67 33 the the DT cord-000248-zueoyesj 67 34 sole sole JJ cord-000248-zueoyesj 67 35 prostatic prostatic JJ cord-000248-zueoyesj 67 36 carcinoma carcinoma NN cord-000248-zueoyesj 67 37 grading grading NN cord-000248-zueoyesj 67 38 system system NN cord-000248-zueoyesj 67 39 recommended recommend VBN cord-000248-zueoyesj 67 40 by by IN cord-000248-zueoyesj 67 41 the the DT cord-000248-zueoyesj 67 42 World World NNP cord-000248-zueoyesj 67 43 Health Health NNP cord-000248-zueoyesj 67 44 Organization Organization NNP cord-000248-zueoyesj 67 45 ' ' '' cord-000248-zueoyesj 67 46 ' ' '' cord-000248-zueoyesj 67 47 . . . cord-000248-zueoyesj 68 1 However however RB cord-000248-zueoyesj 68 2 , , , cord-000248-zueoyesj 68 3 undergrading undergrading NN cord-000248-zueoyesj 68 4 , , , cord-000248-zueoyesj 68 5 underdiagnosis underdiagnosis NNP cord-000248-zueoyesj 68 6 , , , cord-000248-zueoyesj 68 7 interobserver interobserver NN cord-000248-zueoyesj 68 8 reproducibility reproducibility NN cord-000248-zueoyesj 68 9 and and CC cord-000248-zueoyesj 68 10 variable variable JJ cord-000248-zueoyesj 68 11 trends trend NNS cord-000248-zueoyesj 68 12 in in IN cord-000248-zueoyesj 68 13 grading grading NN cord-000248-zueoyesj 68 14 have have VBP cord-000248-zueoyesj 68 15 been be VBN cord-000248-zueoyesj 68 16 observed observe VBN cord-000248-zueoyesj 68 17 as as IN cord-000248-zueoyesj 68 18 major major JJ cord-000248-zueoyesj 68 19 problems problem NNS cord-000248-zueoyesj 68 20 [ [ -LRB- cord-000248-zueoyesj 68 21 41 41 CD cord-000248-zueoyesj 68 22 , , , cord-000248-zueoyesj 68 23 42 42 CD cord-000248-zueoyesj 68 24 ] ] -RRB- cord-000248-zueoyesj 68 25 . . . cord-000248-zueoyesj 69 1 Melanoma melanoma NN cord-000248-zueoyesj 69 2 , , , cord-000248-zueoyesj 69 3 on on IN cord-000248-zueoyesj 69 4 the the DT cord-000248-zueoyesj 69 5 other other JJ cord-000248-zueoyesj 69 6 hand hand NN cord-000248-zueoyesj 69 7 , , , cord-000248-zueoyesj 69 8 differs differ VBZ cord-000248-zueoyesj 69 9 from from IN cord-000248-zueoyesj 69 10 prostate prostate NN cord-000248-zueoyesj 69 11 cancer cancer NN cord-000248-zueoyesj 69 12 in in IN cord-000248-zueoyesj 69 13 its -PRON- PRP$ cord-000248-zueoyesj 69 14 rapid rapid JJ cord-000248-zueoyesj 69 15 progression progression NN cord-000248-zueoyesj 69 16 [ [ -LRB- cord-000248-zueoyesj 69 17 43 43 CD cord-000248-zueoyesj 69 18 ] ] -RRB- cord-000248-zueoyesj 69 19 and and CC cord-000248-zueoyesj 69 20 it -PRON- PRP cord-000248-zueoyesj 69 21 is be VBZ cord-000248-zueoyesj 69 22 considered consider VBN cord-000248-zueoyesj 69 23 one one CD cord-000248-zueoyesj 69 24 of of IN cord-000248-zueoyesj 69 25 the the DT cord-000248-zueoyesj 69 26 most most RBS cord-000248-zueoyesj 69 27 aggressive aggressive JJ cord-000248-zueoyesj 69 28 types type NNS cord-000248-zueoyesj 69 29 of of IN cord-000248-zueoyesj 69 30 cancer cancer NN cord-000248-zueoyesj 69 31 . . . cord-000248-zueoyesj 70 1 One one CD cord-000248-zueoyesj 70 2 of of IN cord-000248-zueoyesj 70 3 melanoma melanoma NN cord-000248-zueoyesj 70 4 's 's POS cord-000248-zueoyesj 70 5 usual usual JJ cord-000248-zueoyesj 70 6 markers marker NNS cord-000248-zueoyesj 70 7 of of IN cord-000248-zueoyesj 70 8 progression progression NN cord-000248-zueoyesj 70 9 and and CC cord-000248-zueoyesj 70 10 concern concern NN cord-000248-zueoyesj 70 11 ( ( -LRB- cord-000248-zueoyesj 70 12 i.e i.e IN cord-000248-zueoyesj 70 13 thickness thickness NN cord-000248-zueoyesj 70 14 ) ) -RRB- cord-000248-zueoyesj 70 15 is be VBZ cord-000248-zueoyesj 70 16 measured measure VBN cord-000248-zueoyesj 70 17 in in IN cord-000248-zueoyesj 70 18 millimetres millimetre NNS cord-000248-zueoyesj 70 19 , , , cord-000248-zueoyesj 70 20 which which WDT cord-000248-zueoyesj 70 21 gives give VBZ cord-000248-zueoyesj 70 22 a a DT cord-000248-zueoyesj 70 23 rough rough JJ cord-000248-zueoyesj 70 24 idea idea NN cord-000248-zueoyesj 70 25 of of IN cord-000248-zueoyesj 70 26 how how WRB cord-000248-zueoyesj 70 27 devastatingly devastatingly RB cord-000248-zueoyesj 70 28 fast fast JJ cord-000248-zueoyesj 70 29 the the DT cord-000248-zueoyesj 70 30 disease disease NN cord-000248-zueoyesj 70 31 can can MD cord-000248-zueoyesj 70 32 spread spread VB cord-000248-zueoyesj 70 33 . . . cord-000248-zueoyesj 71 1 We -PRON- PRP cord-000248-zueoyesj 71 2 will will MD cord-000248-zueoyesj 71 3 present present VB cord-000248-zueoyesj 71 4 our -PRON- PRP$ cord-000248-zueoyesj 71 5 results result NNS cord-000248-zueoyesj 71 6 starting start VBG cord-000248-zueoyesj 71 7 with with IN cord-000248-zueoyesj 71 8 one one CD cord-000248-zueoyesj 71 9 prostate prostate NN cord-000248-zueoyesj 71 10 cancer cancer NN cord-000248-zueoyesj 71 11 dataset dataset NN cord-000248-zueoyesj 71 12 , , , cord-000248-zueoyesj 71 13 followed follow VBN cord-000248-zueoyesj 71 14 by by IN cord-000248-zueoyesj 71 15 another another DT cord-000248-zueoyesj 71 16 in in IN cord-000248-zueoyesj 71 17 melanoma melanoma NN cord-000248-zueoyesj 71 18 , , , cord-000248-zueoyesj 71 19 to to TO cord-000248-zueoyesj 71 20 come come VB cord-000248-zueoyesj 71 21 back back RB cord-000248-zueoyesj 71 22 to to IN cord-000248-zueoyesj 71 23 the the DT cord-000248-zueoyesj 71 24 prostate prostate NN cord-000248-zueoyesj 71 25 cancer cancer NN cord-000248-zueoyesj 71 26 discussion discussion NN cord-000248-zueoyesj 71 27 using use VBG cord-000248-zueoyesj 71 28 another another DT cord-000248-zueoyesj 71 29 highly highly RB cord-000248-zueoyesj 71 30 relevant relevant JJ cord-000248-zueoyesj 71 31 dataset dataset NN cord-000248-zueoyesj 71 32 . . . cord-000248-zueoyesj 72 1 This this DT cord-000248-zueoyesj 72 2 is be VBZ cord-000248-zueoyesj 72 3 a a DT cord-000248-zueoyesj 72 4 departure departure NN cord-000248-zueoyesj 72 5 from from IN cord-000248-zueoyesj 72 6 the the DT cord-000248-zueoyesj 72 7 alternative alternative JJ cord-000248-zueoyesj 72 8 approach approach NN cord-000248-zueoyesj 72 9 in in IN cord-000248-zueoyesj 72 10 which which WDT cord-000248-zueoyesj 72 11 each each DT cord-000248-zueoyesj 72 12 disease disease NN cord-000248-zueoyesj 72 13 is be VBZ cord-000248-zueoyesj 72 14 discussed discuss VBN cord-000248-zueoyesj 72 15 in in IN cord-000248-zueoyesj 72 16 separate separate JJ cord-000248-zueoyesj 72 17 sections section NNS cord-000248-zueoyesj 72 18 . . . cord-000248-zueoyesj 73 1 However however RB cord-000248-zueoyesj 73 2 , , , cord-000248-zueoyesj 73 3 after after IN cord-000248-zueoyesj 73 4 considering consider VBG cord-000248-zueoyesj 73 5 several several JJ cord-000248-zueoyesj 73 6 possibilities possibility NNS cord-000248-zueoyesj 73 7 , , , cord-000248-zueoyesj 73 8 we -PRON- PRP cord-000248-zueoyesj 73 9 are be VBP cord-000248-zueoyesj 73 10 convinced convinced JJ cord-000248-zueoyesj 73 11 that that IN cord-000248-zueoyesj 73 12 our -PRON- PRP$ cord-000248-zueoyesj 73 13 approach approach NN cord-000248-zueoyesj 73 14 is be VBZ cord-000248-zueoyesj 73 15 the the DT cord-000248-zueoyesj 73 16 most most RBS cord-000248-zueoyesj 73 17 appropriate appropriate JJ cord-000248-zueoyesj 73 18 to to TO cord-000248-zueoyesj 73 19 showcase showcase VB cord-000248-zueoyesj 73 20 the the DT cord-000248-zueoyesj 73 21 technique technique NN cord-000248-zueoyesj 73 22 and and CC cord-000248-zueoyesj 73 23 its -PRON- PRP$ cord-000248-zueoyesj 73 24 power power NN cord-000248-zueoyesj 73 25 . . . cord-000248-zueoyesj 74 1 Details detail NNS cord-000248-zueoyesj 74 2 on on IN cord-000248-zueoyesj 74 3 the the DT cord-000248-zueoyesj 74 4 datasets dataset NNS cord-000248-zueoyesj 74 5 and and CC cord-000248-zueoyesj 74 6 methods method NNS cord-000248-zueoyesj 74 7 used use VBN cord-000248-zueoyesj 74 8 are be VBP cord-000248-zueoyesj 74 9 given give VBN cord-000248-zueoyesj 74 10 in in IN cord-000248-zueoyesj 74 11 the the DT cord-000248-zueoyesj 74 12 ' ' `` cord-000248-zueoyesj 74 13 Materials material NNS cord-000248-zueoyesj 74 14 and and CC cord-000248-zueoyesj 74 15 Methods Methods NNPS cord-000248-zueoyesj 74 16 ' ' POS cord-000248-zueoyesj 74 17 section section NN cord-000248-zueoyesj 74 18 of of IN cord-000248-zueoyesj 74 19 this this DT cord-000248-zueoyesj 74 20 paper paper NN cord-000248-zueoyesj 74 21 . . . cord-000248-zueoyesj 75 1 We -PRON- PRP cord-000248-zueoyesj 75 2 also also RB cord-000248-zueoyesj 75 3 refer refer VBP cord-000248-zueoyesj 75 4 to to IN cord-000248-zueoyesj 75 5 the the DT cord-000248-zueoyesj 75 6 original original JJ cord-000248-zueoyesj 75 7 studies study NNS cord-000248-zueoyesj 75 8 and and CC cord-000248-zueoyesj 75 9 manuscripts manuscript NNS cord-000248-zueoyesj 75 10 associated associate VBN cord-000248-zueoyesj 75 11 to to IN cord-000248-zueoyesj 75 12 the the DT cord-000248-zueoyesj 75 13 three three CD cord-000248-zueoyesj 75 14 datasets dataset NNS cord-000248-zueoyesj 75 15 we -PRON- PRP cord-000248-zueoyesj 75 16 analysed analyse VBD cord-000248-zueoyesj 75 17 . . . cord-000248-zueoyesj 76 1 and and CC cord-000248-zueoyesj 76 2 available available JJ cord-000248-zueoyesj 76 3 at at IN cord-000248-zueoyesj 76 4 the the DT cord-000248-zueoyesj 76 5 web web NN cord-000248-zueoyesj 76 6 address address NN cord-000248-zueoyesj 76 7 given give VBN cord-000248-zueoyesj 76 8 above above RB cord-000248-zueoyesj 76 9 ) ) -RRB- cord-000248-zueoyesj 76 10 . . . cord-000248-zueoyesj 77 1 After after IN cord-000248-zueoyesj 77 2 imputation imputation NN cord-000248-zueoyesj 77 3 of of IN cord-000248-zueoyesj 77 4 missing miss VBG cord-000248-zueoyesj 77 5 values value NNS cord-000248-zueoyesj 77 6 , , , cord-000248-zueoyesj 77 7 we -PRON- PRP cord-000248-zueoyesj 77 8 first first RB cord-000248-zueoyesj 77 9 calculated calculate VBD cord-000248-zueoyesj 77 10 the the DT cord-000248-zueoyesj 77 11 Normalized Normalized NNP cord-000248-zueoyesj 77 12 Shannon Shannon NNP cord-000248-zueoyesj 77 13 Entropy Entropy NNP cord-000248-zueoyesj 77 14 and and CC cord-000248-zueoyesj 77 15 the the DT cord-000248-zueoyesj 77 16 MPR MPR NNP cord-000248-zueoyesj 77 17 - - HYPH cord-000248-zueoyesj 77 18 Statistical Statistical NNP cord-000248-zueoyesj 77 19 Complexity Complexity NNP cord-000248-zueoyesj 77 20 for for IN cord-000248-zueoyesj 77 21 the the DT cord-000248-zueoyesj 77 22 each each DT cord-000248-zueoyesj 77 23 sample sample NN cord-000248-zueoyesj 77 24 . . . cord-000248-zueoyesj 78 1 The the DT cord-000248-zueoyesj 78 2 flowing flow VBG cord-000248-zueoyesj 78 3 section section NN cord-000248-zueoyesj 78 4 explains explain VBZ cord-000248-zueoyesj 78 5 the the DT cord-000248-zueoyesj 78 6 context context NN cord-000248-zueoyesj 78 7 in in IN cord-000248-zueoyesj 78 8 which which WDT cord-000248-zueoyesj 78 9 our -PRON- PRP$ cord-000248-zueoyesj 78 10 results result NNS cord-000248-zueoyesj 78 11 were be VBD cord-000248-zueoyesj 78 12 generated generate VBN cord-000248-zueoyesj 78 13 ( ( -LRB- cord-000248-zueoyesj 78 14 refer refer VB cord-000248-zueoyesj 78 15 to to IN cord-000248-zueoyesj 78 16 the the DT cord-000248-zueoyesj 78 17 ' ' `` cord-000248-zueoyesj 78 18 Materials material NNS cord-000248-zueoyesj 78 19 and and CC cord-000248-zueoyesj 78 20 Methods Methods NNPS cord-000248-zueoyesj 78 21 ' ' POS cord-000248-zueoyesj 78 22 section section NN cord-000248-zueoyesj 78 23 for for IN cord-000248-zueoyesj 78 24 detail detail NN cord-000248-zueoyesj 78 25 on on IN cord-000248-zueoyesj 78 26 how how WRB cord-000248-zueoyesj 78 27 our -PRON- PRP$ cord-000248-zueoyesj 78 28 quantities quantity NNS cord-000248-zueoyesj 78 29 are be VBP cord-000248-zueoyesj 78 30 computed compute VBN cord-000248-zueoyesj 78 31 ) ) -RRB- cord-000248-zueoyesj 78 32 . . . cord-000248-zueoyesj 79 1 The the DT cord-000248-zueoyesj 79 2 Normalized Normalized NNP cord-000248-zueoyesj 79 3 Shannon Shannon NNP cord-000248-zueoyesj 79 4 Entropy Entropy NNP cord-000248-zueoyesj 79 5 measure measure NN cord-000248-zueoyesj 79 6 is be VBZ cord-000248-zueoyesj 79 7 widely widely RB cord-000248-zueoyesj 79 8 used use VBN cord-000248-zueoyesj 79 9 in in IN cord-000248-zueoyesj 79 10 ecosystem ecosystem NN cord-000248-zueoyesj 79 11 modelling modelling NN cord-000248-zueoyesj 79 12 to to TO cord-000248-zueoyesj 79 13 quantify quantify VB cord-000248-zueoyesj 79 14 species specie NNS cord-000248-zueoyesj 79 15 diversity diversity NN cord-000248-zueoyesj 79 16 , , , cord-000248-zueoyesj 79 17 where where WRB cord-000248-zueoyesj 79 18 it -PRON- PRP cord-000248-zueoyesj 79 19 is be VBZ cord-000248-zueoyesj 79 20 acknowledge acknowledge VBN cord-000248-zueoyesj 79 21 as as IN cord-000248-zueoyesj 79 22 having have VBG cord-000248-zueoyesj 79 23 great great JJ cord-000248-zueoyesj 79 24 sensitivity sensitivity NN cord-000248-zueoyesj 79 25 to to IN cord-000248-zueoyesj 79 26 relative relative JJ cord-000248-zueoyesj 79 27 abundances abundance NNS cord-000248-zueoyesj 79 28 of of IN cord-000248-zueoyesj 79 29 species specie NNS cord-000248-zueoyesj 79 30 in in IN cord-000248-zueoyesj 79 31 an an DT cord-000248-zueoyesj 79 32 ecosystem ecosystem NN cord-000248-zueoyesj 79 33 [ [ -LRB- cord-000248-zueoyesj 79 34 45 45 CD cord-000248-zueoyesj 79 35 ] ] -RRB- cord-000248-zueoyesj 79 36 . . . cord-000248-zueoyesj 80 1 We -PRON- PRP cord-000248-zueoyesj 80 2 utilise utilise VBP cord-000248-zueoyesj 80 3 the the DT cord-000248-zueoyesj 80 4 same same JJ cord-000248-zueoyesj 80 5 sensitivity sensitivity NN cord-000248-zueoyesj 80 6 to to TO cord-000248-zueoyesj 80 7 differentiate differentiate VB cord-000248-zueoyesj 80 8 a a DT cord-000248-zueoyesj 80 9 samples sample NNS cord-000248-zueoyesj 80 10 in in IN cord-000248-zueoyesj 80 11 cancer cancer NN cord-000248-zueoyesj 80 12 datasets dataset NNS cord-000248-zueoyesj 80 13 . . . cord-000248-zueoyesj 81 1 Figure figure NN cord-000248-zueoyesj 81 2 1 1 CD cord-000248-zueoyesj 81 3 shows show VBZ cord-000248-zueoyesj 81 4 that that IN cord-000248-zueoyesj 81 5 the the DT cord-000248-zueoyesj 81 6 Normalized Normalized NNP cord-000248-zueoyesj 81 7 Shannon Shannon NNP cord-000248-zueoyesj 81 8 Entropy Entropy NNP cord-000248-zueoyesj 81 9 of of IN cord-000248-zueoyesj 81 10 prostate prostate NN cord-000248-zueoyesj 81 11 cancer cancer NN cord-000248-zueoyesj 81 12 tumor tumor NN cord-000248-zueoyesj 81 13 samples sample NNS cord-000248-zueoyesj 81 14 do do VBP cord-000248-zueoyesj 81 15 not not RB cord-000248-zueoyesj 81 16 differ differ VB cord-000248-zueoyesj 81 17 much much RB cord-000248-zueoyesj 81 18 from from IN cord-000248-zueoyesj 81 19 normal normal JJ cord-000248-zueoyesj 81 20 samples sample NNS cord-000248-zueoyesj 81 21 . . . cord-000248-zueoyesj 82 1 This this DT cord-000248-zueoyesj 82 2 is be VBZ cord-000248-zueoyesj 82 3 in in IN cord-000248-zueoyesj 82 4 contrast contrast NN cord-000248-zueoyesj 82 5 to to IN cord-000248-zueoyesj 82 6 lymph lymph NN cord-000248-zueoyesj 82 7 node node NN cord-000248-zueoyesj 82 8 metastasis metastasis NN cord-000248-zueoyesj 82 9 samples sample NNS cord-000248-zueoyesj 82 10 that that WDT cord-000248-zueoyesj 82 11 appear appear VBP cord-000248-zueoyesj 82 12 to to TO cord-000248-zueoyesj 82 13 have have VB cord-000248-zueoyesj 82 14 smaller small JJR cord-000248-zueoyesj 82 15 values value NNS cord-000248-zueoyesj 82 16 of of IN cord-000248-zueoyesj 82 17 Normalized Normalized NNP cord-000248-zueoyesj 82 18 Shannon Shannon NNP cord-000248-zueoyesj 82 19 Entropy Entropy NNP cord-000248-zueoyesj 82 20 . . . cord-000248-zueoyesj 83 1 A a DT cord-000248-zueoyesj 83 2 mathematical mathematical JJ cord-000248-zueoyesj 83 3 interpretation interpretation NN cord-000248-zueoyesj 83 4 of of IN cord-000248-zueoyesj 83 5 this this DT cord-000248-zueoyesj 83 6 result result NN cord-000248-zueoyesj 83 7 is be VBZ cord-000248-zueoyesj 83 8 that that IN cord-000248-zueoyesj 83 9 the the DT cord-000248-zueoyesj 83 10 samples sample NNS cord-000248-zueoyesj 83 11 from from IN cord-000248-zueoyesj 83 12 lymph lymph NN cord-000248-zueoyesj 83 13 node node NN cord-000248-zueoyesj 83 14 metastases metastasis NNS cord-000248-zueoyesj 83 15 have have VBP cord-000248-zueoyesj 83 16 cells cell NNS cord-000248-zueoyesj 83 17 that that WDT cord-000248-zueoyesj 83 18 not not RB cord-000248-zueoyesj 83 19 only only RB cord-000248-zueoyesj 83 20 varied vary VBD cord-000248-zueoyesj 83 21 their -PRON- PRP$ cord-000248-zueoyesj 83 22 transcriptomic transcriptomic JJ cord-000248-zueoyesj 83 23 profile profile NN cord-000248-zueoyesj 83 24 , , , cord-000248-zueoyesj 83 25 they -PRON- PRP cord-000248-zueoyesj 83 26 have have VBP cord-000248-zueoyesj 83 27 also also RB cord-000248-zueoyesj 83 28 ' ' '' cord-000248-zueoyesj 83 29 ' ' '' cord-000248-zueoyesj 83 30 peaked peak VBD cord-000248-zueoyesj 83 31 ' ' '' cord-000248-zueoyesj 83 32 ' ' '' cord-000248-zueoyesj 83 33 the the DT cord-000248-zueoyesj 83 34 distribution distribution NN cord-000248-zueoyesj 83 35 of of IN cord-000248-zueoyesj 83 36 expression expression NN cord-000248-zueoyesj 83 37 values value NNS cord-000248-zueoyesj 83 38 with with IN cord-000248-zueoyesj 83 39 significant significant JJ cord-000248-zueoyesj 83 40 fold fold JJ cord-000248-zueoyesj 83 41 increases increase NNS cord-000248-zueoyesj 83 42 on on IN cord-000248-zueoyesj 83 43 a a DT cord-000248-zueoyesj 83 44 smaller small JJR cord-000248-zueoyesj 83 45 number number NN cord-000248-zueoyesj 83 46 of of IN cord-000248-zueoyesj 83 47 probes probe NNS cord-000248-zueoyesj 83 48 . . . cord-000248-zueoyesj 84 1 This this DT cord-000248-zueoyesj 84 2 explains explain VBZ cord-000248-zueoyesj 84 3 the the DT cord-000248-zueoyesj 84 4 reduction reduction NN cord-000248-zueoyesj 84 5 in in IN cord-000248-zueoyesj 84 6 Normalized Normalized NNP cord-000248-zueoyesj 84 7 Shannon Shannon NNP cord-000248-zueoyesj 84 8 Entropy Entropy NNP cord-000248-zueoyesj 84 9 . . . cord-000248-zueoyesj 85 1 We -PRON- PRP cord-000248-zueoyesj 85 2 note note VBP cord-000248-zueoyesj 85 3 that that IN cord-000248-zueoyesj 85 4 there there EX cord-000248-zueoyesj 85 5 are be VBP cord-000248-zueoyesj 85 6 several several JJ cord-000248-zueoyesj 85 7 mechanisms mechanism NNS cord-000248-zueoyesj 85 8 that that WDT cord-000248-zueoyesj 85 9 can can MD cord-000248-zueoyesj 85 10 explain explain VB cord-000248-zueoyesj 85 11 a a DT cord-000248-zueoyesj 85 12 macroscopically macroscopically RB cord-000248-zueoyesj 85 13 observable observable JJ cord-000248-zueoyesj 85 14 global global JJ cord-000248-zueoyesj 85 15 reduction reduction NN cord-000248-zueoyesj 85 16 of of IN cord-000248-zueoyesj 85 17 transcription transcription NN cord-000248-zueoyesj 85 18 . . . cord-000248-zueoyesj 86 1 For for IN cord-000248-zueoyesj 86 2 instance instance NN cord-000248-zueoyesj 86 3 , , , cord-000248-zueoyesj 86 4 this this DT cord-000248-zueoyesj 86 5 may may MD cord-000248-zueoyesj 86 6 indicate indicate VB cord-000248-zueoyesj 86 7 that that IN cord-000248-zueoyesj 86 8 a a DT cord-000248-zueoyesj 86 9 relatively relatively RB cord-000248-zueoyesj 86 10 large large JJ cord-000248-zueoyesj 86 11 number number NN cord-000248-zueoyesj 86 12 of of IN cord-000248-zueoyesj 86 13 genes gene NNS cord-000248-zueoyesj 86 14 have have VBP cord-000248-zueoyesj 86 15 reduced reduce VBN cord-000248-zueoyesj 86 16 their -PRON- PRP$ cord-000248-zueoyesj 86 17 expression expression NN cord-000248-zueoyesj 86 18 levels level NNS cord-000248-zueoyesj 86 19 by by IN cord-000248-zueoyesj 86 20 genome genome NN cord-000248-zueoyesj 86 21 damage damage NN cord-000248-zueoyesj 86 22 , , , cord-000248-zueoyesj 86 23 changes change NNS cord-000248-zueoyesj 86 24 in in IN cord-000248-zueoyesj 86 25 gene gene NN cord-000248-zueoyesj 86 26 regulation regulation NN cord-000248-zueoyesj 86 27 , , , cord-000248-zueoyesj 86 28 or or CC cord-000248-zueoyesj 86 29 other other JJ cord-000248-zueoyesj 86 30 silencing silencing NN cord-000248-zueoyesj 86 31 processes process NNS cord-000248-zueoyesj 86 32 . . . cord-000248-zueoyesj 87 1 It -PRON- PRP cord-000248-zueoyesj 87 2 is be VBZ cord-000248-zueoyesj 87 3 reassuring reassure VBG cord-000248-zueoyesj 87 4 to to TO cord-000248-zueoyesj 87 5 observe observe VB cord-000248-zueoyesj 87 6 that that IN cord-000248-zueoyesj 87 7 the the DT cord-000248-zueoyesj 87 8 changes change NNS cord-000248-zueoyesj 87 9 of of IN cord-000248-zueoyesj 87 10 the the DT cord-000248-zueoyesj 87 11 most most RBS cord-000248-zueoyesj 87 12 prototypical prototypical JJ cord-000248-zueoyesj 87 13 quantitative quantitative JJ cord-000248-zueoyesj 87 14 measure measure NN cord-000248-zueoyesj 87 15 we -PRON- PRP cord-000248-zueoyesj 87 16 can can MD cord-000248-zueoyesj 87 17 draw draw VB cord-000248-zueoyesj 87 18 from from IN cord-000248-zueoyesj 87 19 Information Information NNP cord-000248-zueoyesj 87 20 Theory Theory NNP cord-000248-zueoyesj 87 21 , , , cord-000248-zueoyesj 87 22 the the DT cord-000248-zueoyesj 87 23 Normalized Normalized NNP cord-000248-zueoyesj 87 24 Shannon Shannon NNP cord-000248-zueoyesj 87 25 Entropy Entropy NNP cord-000248-zueoyesj 87 26 correlate correlate VBP cord-000248-zueoyesj 87 27 well well RB cord-000248-zueoyesj 87 28 with with IN cord-000248-zueoyesj 87 29 the the DT cord-000248-zueoyesj 87 30 transition transition NN cord-000248-zueoyesj 87 31 between between IN cord-000248-zueoyesj 87 32 normal normal JJ cord-000248-zueoyesj 87 33 samples sample NNS cord-000248-zueoyesj 87 34 with with IN cord-000248-zueoyesj 87 35 to to IN cord-000248-zueoyesj 87 36 ones one NNS cord-000248-zueoyesj 87 37 with with IN cord-000248-zueoyesj 87 38 metastases metastasis NNS cord-000248-zueoyesj 87 39 . . . cord-000248-zueoyesj 88 1 However however RB cord-000248-zueoyesj 88 2 , , , cord-000248-zueoyesj 88 3 it -PRON- PRP cord-000248-zueoyesj 88 4 is be VBZ cord-000248-zueoyesj 88 5 also also RB cord-000248-zueoyesj 88 6 evident evident JJ cord-000248-zueoyesj 88 7 from from IN cord-000248-zueoyesj 88 8 that that DT cord-000248-zueoyesj 88 9 normal normal JJ cord-000248-zueoyesj 88 10 samples sample NNS cord-000248-zueoyesj 88 11 do do VBP cord-000248-zueoyesj 88 12 not not RB cord-000248-zueoyesj 88 13 differentiate differentiate VB cord-000248-zueoyesj 88 14 much much JJ cord-000248-zueoyesj 88 15 from from IN cord-000248-zueoyesj 88 16 the the DT cord-000248-zueoyesj 88 17 tumor tumor NN cord-000248-zueoyesj 88 18 group group NN cord-000248-zueoyesj 88 19 ( ( -LRB- cord-000248-zueoyesj 88 20 the the DT cord-000248-zueoyesj 88 21 Normalized Normalized NNP cord-000248-zueoyesj 88 22 Shannon Shannon NNP cord-000248-zueoyesj 88 23 Entropy Entropy NNP cord-000248-zueoyesj 88 24 values value NNS cord-000248-zueoyesj 88 25 do do VBP cord-000248-zueoyesj 88 26 not not RB cord-000248-zueoyesj 88 27 differ differ VB cord-000248-zueoyesj 88 28 much much RB cord-000248-zueoyesj 88 29 ) ) -RRB- cord-000248-zueoyesj 88 30 . . . cord-000248-zueoyesj 89 1 It -PRON- PRP cord-000248-zueoyesj 89 2 is be VBZ cord-000248-zueoyesj 89 3 then then RB cord-000248-zueoyesj 89 4 not not RB cord-000248-zueoyesj 89 5 the the DT cord-000248-zueoyesj 89 6 number number NN cord-000248-zueoyesj 89 7 of of IN cord-000248-zueoyesj 89 8 genes gene NNS cord-000248-zueoyesj 89 9 with with IN cord-000248-zueoyesj 89 10 high high JJ cord-000248-zueoyesj 89 11 expression expression NN cord-000248-zueoyesj 89 12 values value NNS cord-000248-zueoyesj 89 13 , , , cord-000248-zueoyesj 89 14 but but CC cord-000248-zueoyesj 89 15 the the DT cord-000248-zueoyesj 89 16 change change NN cord-000248-zueoyesj 89 17 in in IN cord-000248-zueoyesj 89 18 the the DT cord-000248-zueoyesj 89 19 distribution distribution NN cord-000248-zueoyesj 89 20 of of IN cord-000248-zueoyesj 89 21 expression expression NN cord-000248-zueoyesj 89 22 levels level NNS cord-000248-zueoyesj 89 23 on on IN cord-000248-zueoyesj 89 24 the the DT cord-000248-zueoyesj 89 25 molecular molecular JJ cord-000248-zueoyesj 89 26 profile profile NN cord-000248-zueoyesj 89 27 , , , cord-000248-zueoyesj 89 28 that that WDT cord-000248-zueoyesj 89 29 can can MD cord-000248-zueoyesj 89 30 provide provide VB cord-000248-zueoyesj 89 31 the the DT cord-000248-zueoyesj 89 32 other other JJ cord-000248-zueoyesj 89 33 measure measure NN cord-000248-zueoyesj 89 34 that that WDT cord-000248-zueoyesj 89 35 could could MD cord-000248-zueoyesj 89 36 distinguish distinguish VB cord-000248-zueoyesj 89 37 these these DT cord-000248-zueoyesj 89 38 other other JJ cord-000248-zueoyesj 89 39 samples sample NNS cord-000248-zueoyesj 89 40 . . . cord-000248-zueoyesj 90 1 This this DT cord-000248-zueoyesj 90 2 must must MD cord-000248-zueoyesj 90 3 be be VB cord-000248-zueoyesj 90 4 handled handle VBN cord-000248-zueoyesj 90 5 by by IN cord-000248-zueoyesj 90 6 the the DT cord-000248-zueoyesj 90 7 other other JJ cord-000248-zueoyesj 90 8 statistical statistical JJ cord-000248-zueoyesj 90 9 complexity complexity NN cord-000248-zueoyesj 90 10 measures measure NNS cord-000248-zueoyesj 90 11 to to TO cord-000248-zueoyesj 90 12 be be VB cord-000248-zueoyesj 90 13 discussed discuss VBN cord-000248-zueoyesj 90 14 next next RB cord-000248-zueoyesj 90 15 . . . cord-000248-zueoyesj 91 1 Several several JJ cord-000248-zueoyesj 91 2 statistical statistical JJ cord-000248-zueoyesj 91 3 complexity complexity NN cord-000248-zueoyesj 91 4 measures measure NNS cord-000248-zueoyesj 91 5 can can MD cord-000248-zueoyesj 91 6 be be VB cord-000248-zueoyesj 91 7 defined define VBN cord-000248-zueoyesj 91 8 which which WDT cord-000248-zueoyesj 91 9 aim aim VBP cord-000248-zueoyesj 91 10 to to TO cord-000248-zueoyesj 91 11 clarify clarify VB cord-000248-zueoyesj 91 12 our -PRON- PRP$ cord-000248-zueoyesj 91 13 argument argument NN cord-000248-zueoyesj 91 14 . . . cord-000248-zueoyesj 92 1 We -PRON- PRP cord-000248-zueoyesj 92 2 will will MD cord-000248-zueoyesj 92 3 first first RB cord-000248-zueoyesj 92 4 discuss discuss VB cord-000248-zueoyesj 92 5 the the DT cord-000248-zueoyesj 92 6 results result NNS cord-000248-zueoyesj 92 7 of of IN cord-000248-zueoyesj 92 8 computing compute VBG cord-000248-zueoyesj 92 9 the the DT cord-000248-zueoyesj 92 10 MPR MPR NNP cord-000248-zueoyesj 92 11 - - HYPH cord-000248-zueoyesj 92 12 Statistical Statistical NNP cord-000248-zueoyesj 92 13 Complexity Complexity NNP cord-000248-zueoyesj 92 14 measure measure NN cord-000248-zueoyesj 92 15 ( ( -LRB- cord-000248-zueoyesj 92 16 in in IN cord-000248-zueoyesj 92 17 the the DT cord-000248-zueoyesj 92 18 previous previous JJ cord-000248-zueoyesj 92 19 figure figure NN cord-000248-zueoyesj 92 20 the the DT cord-000248-zueoyesj 92 21 y y NN cord-000248-zueoyesj 92 22 - - HYPH cord-000248-zueoyesj 92 23 coordinates coordinate NNS cord-000248-zueoyesj 92 24 correspond correspond VBP cord-000248-zueoyesj 92 25 to to IN cord-000248-zueoyesj 92 26 the the DT cord-000248-zueoyesj 92 27 MPR MPR NNP cord-000248-zueoyesj 92 28 - - HYPH cord-000248-zueoyesj 92 29 Statistical Statistical NNP cord-000248-zueoyesj 92 30 Complexity Complexity NNP cord-000248-zueoyesj 92 31 values value NNS cord-000248-zueoyesj 92 32 of of IN cord-000248-zueoyesj 92 33 each each DT cord-000248-zueoyesj 92 34 sample sample NN cord-000248-zueoyesj 92 35 ) ) -RRB- cord-000248-zueoyesj 92 36 . . . cord-000248-zueoyesj 93 1 The the DT cord-000248-zueoyesj 93 2 MPR MPR NNP cord-000248-zueoyesj 93 3 - - HYPH cord-000248-zueoyesj 93 4 Statistical Statistical NNP cord-000248-zueoyesj 93 5 Complexity Complexity NNP cord-000248-zueoyesj 93 6 is be VBZ cord-000248-zueoyesj 93 7 proportional proportional JJ cord-000248-zueoyesj 93 8 to to IN cord-000248-zueoyesj 93 9 both both PDT cord-000248-zueoyesj 93 10 the the DT cord-000248-zueoyesj 93 11 Normalized Normalized NNP cord-000248-zueoyesj 93 12 Shannon Shannon NNP cord-000248-zueoyesj 93 13 Entropy Entropy NNP cord-000248-zueoyesj 93 14 associated associate VBD cord-000248-zueoyesj 93 15 to to IN cord-000248-zueoyesj 93 16 the the DT cord-000248-zueoyesj 93 17 transcription transcription NN cord-000248-zueoyesj 93 18 profile profile NN cord-000248-zueoyesj 93 19 and and CC cord-000248-zueoyesj 93 20 the the DT cord-000248-zueoyesj 93 21 Jensen Jensen NNP cord-000248-zueoyesj 93 22 - - HYPH cord-000248-zueoyesj 93 23 Shannon Shannon NNP cord-000248-zueoyesj 93 24 's 's POS cord-000248-zueoyesj 93 25 divergence divergence NN cord-000248-zueoyesj 93 26 between between IN cord-000248-zueoyesj 93 27 that that DT cord-000248-zueoyesj 93 28 probability probability NN cord-000248-zueoyesj 93 29 density density NN cord-000248-zueoyesj 93 30 function function NN cord-000248-zueoyesj 93 31 and and CC cord-000248-zueoyesj 93 32 the the DT cord-000248-zueoyesj 93 33 uniform uniform JJ cord-000248-zueoyesj 93 34 probability probability NN cord-000248-zueoyesj 93 35 distribution distribution NN cord-000248-zueoyesj 93 36 . . . cord-000248-zueoyesj 94 1 Again again RB cord-000248-zueoyesj 94 2 , , , cord-000248-zueoyesj 94 3 we -PRON- PRP cord-000248-zueoyesj 94 4 refer refer VBP cord-000248-zueoyesj 94 5 the the DT cord-000248-zueoyesj 94 6 reader reader NN cord-000248-zueoyesj 94 7 to to IN cord-000248-zueoyesj 94 8 the the DT cord-000248-zueoyesj 94 9 ' ' `` cord-000248-zueoyesj 94 10 Materials material NNS cord-000248-zueoyesj 94 11 and and CC cord-000248-zueoyesj 94 12 Methods Methods NNPS cord-000248-zueoyesj 94 13 ' ' POS cord-000248-zueoyesj 94 14 section section NN cord-000248-zueoyesj 94 15 for for IN cord-000248-zueoyesj 94 16 an an DT cord-000248-zueoyesj 94 17 explanation explanation NN cord-000248-zueoyesj 94 18 of of IN cord-000248-zueoyesj 94 19 how how WRB cord-000248-zueoyesj 94 20 these these DT cord-000248-zueoyesj 94 21 magnitudes magnitude NNS cord-000248-zueoyesj 94 22 are be VBP cord-000248-zueoyesj 94 23 computed compute VBN cord-000248-zueoyesj 94 24 . . . cord-000248-zueoyesj 95 1 Although although IN cord-000248-zueoyesj 95 2 the the DT cord-000248-zueoyesj 95 3 results result NNS cord-000248-zueoyesj 95 4 of of IN cord-000248-zueoyesj 95 5 using use VBG cord-000248-zueoyesj 95 6 the the DT cord-000248-zueoyesj 95 7 MPR MPR NNP cord-000248-zueoyesj 95 8 - - HYPH cord-000248-zueoyesj 95 9 Statistical Statistical NNP cord-000248-zueoyesj 95 10 Complexity Complexity NNP cord-000248-zueoyesj 95 11 might may MD cord-000248-zueoyesj 95 12 not not RB cord-000248-zueoyesj 95 13 seem seem VB cord-000248-zueoyesj 95 14 particularly particularly RB cord-000248-zueoyesj 95 15 impressive impressive JJ cord-000248-zueoyesj 95 16 , , , cord-000248-zueoyesj 95 17 there there EX cord-000248-zueoyesj 95 18 are be VBP cord-000248-zueoyesj 95 19 a a DT cord-000248-zueoyesj 95 20 few few JJ cord-000248-zueoyesj 95 21 reasons reason NNS cord-000248-zueoyesj 95 22 why why WRB cord-000248-zueoyesj 95 23 we -PRON- PRP cord-000248-zueoyesj 95 24 introduce introduce VBP cord-000248-zueoyesj 95 25 them -PRON- PRP cord-000248-zueoyesj 95 26 at at IN cord-000248-zueoyesj 95 27 this this DT cord-000248-zueoyesj 95 28 stage stage NN cord-000248-zueoyesj 95 29 . . . cord-000248-zueoyesj 96 1 We -PRON- PRP cord-000248-zueoyesj 96 2 want want VBP cord-000248-zueoyesj 96 3 to to TO cord-000248-zueoyesj 96 4 illustrate illustrate VB cord-000248-zueoyesj 96 5 a a DT cord-000248-zueoyesj 96 6 fact fact NN cord-000248-zueoyesj 96 7 that that WDT cord-000248-zueoyesj 96 8 can can MD cord-000248-zueoyesj 96 9 already already RB cord-000248-zueoyesj 96 10 be be VB cord-000248-zueoyesj 96 11 observed observe VBN cord-000248-zueoyesj 96 12 when when WRB cord-000248-zueoyesj 96 13 we -PRON- PRP cord-000248-zueoyesj 96 14 employ employ VBP cord-000248-zueoyesj 96 15 this this DT cord-000248-zueoyesj 96 16 measure measure NN cord-000248-zueoyesj 96 17 on on IN cord-000248-zueoyesj 96 18 this this DT cord-000248-zueoyesj 96 19 dataset dataset NN cord-000248-zueoyesj 96 20 . . . cord-000248-zueoyesj 97 1 In in IN cord-000248-zueoyesj 97 2 this this DT cord-000248-zueoyesj 97 3 dataset dataset NN cord-000248-zueoyesj 97 4 , , , cord-000248-zueoyesj 97 5 for for IN cord-000248-zueoyesj 97 6 a a DT cord-000248-zueoyesj 97 7 given give VBN cord-000248-zueoyesj 97 8 entropy entropy NN cord-000248-zueoyesj 97 9 value value NN cord-000248-zueoyesj 97 10 interval interval NN cord-000248-zueoyesj 97 11 , , , cord-000248-zueoyesj 97 12 normal normal JJ cord-000248-zueoyesj 97 13 tissue tissue NN cord-000248-zueoyesj 97 14 samples sample NNS cord-000248-zueoyesj 97 15 tend tend VBP cord-000248-zueoyesj 97 16 to to TO cord-000248-zueoyesj 97 17 have have VB cord-000248-zueoyesj 97 18 relatively relatively RB cord-000248-zueoyesj 97 19 lower low JJR cord-000248-zueoyesj 97 20 MPR MPR NNP cord-000248-zueoyesj 97 21 - - HYPH cord-000248-zueoyesj 97 22 Statistical Statistical NNP cord-000248-zueoyesj 97 23 Complexity Complexity NNP cord-000248-zueoyesj 97 24 values value NNS cord-000248-zueoyesj 97 25 than than IN cord-000248-zueoyesj 97 26 tumor tumor NN cord-000248-zueoyesj 97 27 and and CC cord-000248-zueoyesj 97 28 lymph lymph NN cord-000248-zueoyesj 97 29 node node NN cord-000248-zueoyesj 97 30 metastasis metastasis NN cord-000248-zueoyesj 97 31 . . . cord-000248-zueoyesj 98 1 This this DT cord-000248-zueoyesj 98 2 means mean VBZ cord-000248-zueoyesj 98 3 that that IN cord-000248-zueoyesj 98 4 both both DT cord-000248-zueoyesj 98 5 prostate prostate NN cord-000248-zueoyesj 98 6 cancer cancer NN cord-000248-zueoyesj 98 7 and and CC cord-000248-zueoyesj 98 8 metastases metastasis NNS cord-000248-zueoyesj 98 9 samples sample NNS cord-000248-zueoyesj 98 10 diverge diverge VBP cord-000248-zueoyesj 98 11 from from IN cord-000248-zueoyesj 98 12 a a DT cord-000248-zueoyesj 98 13 ' ' '' cord-000248-zueoyesj 98 14 ' ' `` cord-000248-zueoyesj 98 15 more more JJR cord-000248-zueoyesj 98 16 uniform uniform NN cord-000248-zueoyesj 98 17 ' ' '' cord-000248-zueoyesj 98 18 ' ' '' cord-000248-zueoyesj 98 19 distribution distribution NN cord-000248-zueoyesj 98 20 indicating indicate VBG cord-000248-zueoyesj 98 21 that that IN cord-000248-zueoyesj 98 22 the the DT cord-000248-zueoyesj 98 23 distribution distribution NN cord-000248-zueoyesj 98 24 ' ' '' cord-000248-zueoyesj 98 25 ' ' `` cord-000248-zueoyesj 98 26 peaks peak NNS cord-000248-zueoyesj 98 27 ' ' '' cord-000248-zueoyesj 98 28 ' ' '' cord-000248-zueoyesj 98 29 in in IN cord-000248-zueoyesj 98 30 fewer few JJR cord-000248-zueoyesj 98 31 active active JJ cord-000248-zueoyesj 98 32 genes gene NNS cord-000248-zueoyesj 98 33 . . . cord-000248-zueoyesj 99 1 It -PRON- PRP cord-000248-zueoyesj 99 2 also also RB cord-000248-zueoyesj 99 3 means mean VBZ cord-000248-zueoyesj 99 4 that that IN cord-000248-zueoyesj 99 5 , , , cord-000248-zueoyesj 99 6 in in IN cord-000248-zueoyesj 99 7 terms term NNS cord-000248-zueoyesj 99 8 of of IN cord-000248-zueoyesj 99 9 Jensen Jensen NNP cord-000248-zueoyesj 99 10 - - HYPH cord-000248-zueoyesj 99 11 Shannon Shannon NNP cord-000248-zueoyesj 99 12 's 's POS cord-000248-zueoyesj 99 13 divergence divergence NN cord-000248-zueoyesj 99 14 , , , cord-000248-zueoyesj 99 15 the the DT cord-000248-zueoyesj 99 16 transcriptional transcriptional JJ cord-000248-zueoyesj 99 17 profile profile NN cord-000248-zueoyesj 99 18 of of IN cord-000248-zueoyesj 99 19 a a DT cord-000248-zueoyesj 99 20 normal normal JJ cord-000248-zueoyesj 99 21 prostate prostate NN cord-000248-zueoyesj 99 22 cell cell NN cord-000248-zueoyesj 99 23 sample sample NN cord-000248-zueoyesj 99 24 is be VBZ cord-000248-zueoyesj 99 25 ' ' `` cord-000248-zueoyesj 99 26 ' ' `` cord-000248-zueoyesj 99 27 closer close RBR cord-000248-zueoyesj 99 28 ' ' '' cord-000248-zueoyesj 99 29 ' ' '' cord-000248-zueoyesj 99 30 to to IN cord-000248-zueoyesj 99 31 a a DT cord-000248-zueoyesj 99 32 uniform uniform JJ cord-000248-zueoyesj 99 33 distribution distribution NN cord-000248-zueoyesj 99 34 than than IN cord-000248-zueoyesj 99 35 to to IN cord-000248-zueoyesj 99 36 the the DT cord-000248-zueoyesj 99 37 one one NN cord-000248-zueoyesj 99 38 that that WDT cord-000248-zueoyesj 99 39 is be VBZ cord-000248-zueoyesj 99 40 observed observe VBN cord-000248-zueoyesj 99 41 in in IN cord-000248-zueoyesj 99 42 a a DT cord-000248-zueoyesj 99 43 prostate prostate NN cord-000248-zueoyesj 99 44 cancer cancer NN cord-000248-zueoyesj 99 45 cell cell NN cord-000248-zueoyesj 99 46 sample sample NN cord-000248-zueoyesj 99 47 . . . cord-000248-zueoyesj 100 1 The the DT cord-000248-zueoyesj 100 2 reader reader NN cord-000248-zueoyesj 100 3 will will MD cord-000248-zueoyesj 100 4 readily readily RB cord-000248-zueoyesj 100 5 argue argue VB cord-000248-zueoyesj 100 6 , , , cord-000248-zueoyesj 100 7 and and CC cord-000248-zueoyesj 100 8 with with IN cord-000248-zueoyesj 100 9 reason reason NN cord-000248-zueoyesj 100 10 , , , cord-000248-zueoyesj 100 11 that that IN cord-000248-zueoyesj 100 12 the the DT cord-000248-zueoyesj 100 13 transcriptional transcriptional JJ cord-000248-zueoyesj 100 14 profile profile NN cord-000248-zueoyesj 100 15 of of IN cord-000248-zueoyesj 100 16 a a DT cord-000248-zueoyesj 100 17 normal normal JJ cord-000248-zueoyesj 100 18 cell cell NN cord-000248-zueoyesj 100 19 is be VBZ cord-000248-zueoyesj 100 20 tissue tissue NN cord-000248-zueoyesj 100 21 - - HYPH cord-000248-zueoyesj 100 22 specific specific JJ cord-000248-zueoyesj 100 23 and and CC cord-000248-zueoyesj 100 24 that that IN cord-000248-zueoyesj 100 25 it -PRON- PRP cord-000248-zueoyesj 100 26 hardly hardly RB cord-000248-zueoyesj 100 27 resembles resemble VBZ cord-000248-zueoyesj 100 28 that that DT cord-000248-zueoyesj 100 29 of of IN cord-000248-zueoyesj 100 30 a a DT cord-000248-zueoyesj 100 31 uniform uniform JJ cord-000248-zueoyesj 100 32 distribution distribution NN cord-000248-zueoyesj 100 33 of of IN cord-000248-zueoyesj 100 34 expression expression NN cord-000248-zueoyesj 100 35 values value NNS cord-000248-zueoyesj 100 36 . . . cord-000248-zueoyesj 101 1 That that DT cord-000248-zueoyesj 101 2 is be VBZ cord-000248-zueoyesj 101 3 correct correct JJ cord-000248-zueoyesj 101 4 and and CC cord-000248-zueoyesj 101 5 this this DT cord-000248-zueoyesj 101 6 observation observation NN cord-000248-zueoyesj 101 7 motivates motivate VBZ cord-000248-zueoyesj 101 8 the the DT cord-000248-zueoyesj 101 9 introduction introduction NN cord-000248-zueoyesj 101 10 of of IN cord-000248-zueoyesj 101 11 two two CD cord-000248-zueoyesj 101 12 new new JJ cord-000248-zueoyesj 101 13 statistical statistical JJ cord-000248-zueoyesj 101 14 complexity complexity NN cord-000248-zueoyesj 101 15 measures measure NNS cord-000248-zueoyesj 101 16 . . . cord-000248-zueoyesj 102 1 We -PRON- PRP cord-000248-zueoyesj 102 2 generically generically RB cord-000248-zueoyesj 102 3 call call VBP cord-000248-zueoyesj 102 4 these these DT cord-000248-zueoyesj 102 5 two two CD cord-000248-zueoyesj 102 6 variants variant NNS cord-000248-zueoyesj 102 7 as as IN cord-000248-zueoyesj 102 8 ' ' `` cord-000248-zueoyesj 102 9 M M NNP cord-000248-zueoyesj 102 10 - - HYPH cord-000248-zueoyesj 102 11 complexities complexity NNS cord-000248-zueoyesj 102 12 ' ' '' cord-000248-zueoyesj 102 13 ( ( -LRB- cord-000248-zueoyesj 102 14 with with IN cord-000248-zueoyesj 102 15 ' ' `` cord-000248-zueoyesj 102 16 M M NNP cord-000248-zueoyesj 102 17 ' ' '' cord-000248-zueoyesj 102 18 standing standing NN cord-000248-zueoyesj 102 19 for for IN cord-000248-zueoyesj 102 20 ' ' '' cord-000248-zueoyesj 102 21 ' ' `` cord-000248-zueoyesj 102 22 modified modify VBN cord-000248-zueoyesj 102 23 ' ' '' cord-000248-zueoyesj 102 24 ' ' '' cord-000248-zueoyesj 102 25 ) ) -RRB- cord-000248-zueoyesj 102 26 . . . cord-000248-zueoyesj 103 1 They -PRON- PRP cord-000248-zueoyesj 103 2 have have VBP cord-000248-zueoyesj 103 3 the the DT cord-000248-zueoyesj 103 4 same same JJ cord-000248-zueoyesj 103 5 functional functional JJ cord-000248-zueoyesj 103 6 form form NN cord-000248-zueoyesj 103 7 as as IN cord-000248-zueoyesj 103 8 the the DT cord-000248-zueoyesj 103 9 MPR MPR NNP cord-000248-zueoyesj 103 10 - - HYPH cord-000248-zueoyesj 103 11 Statistical Statistical NNP cord-000248-zueoyesj 103 12 Complexity Complexity NNP cord-000248-zueoyesj 103 13 , , , cord-000248-zueoyesj 103 14 but but CC cord-000248-zueoyesj 103 15 instead instead RB cord-000248-zueoyesj 103 16 of of IN cord-000248-zueoyesj 103 17 computing compute VBG cord-000248-zueoyesj 103 18 the the DT cord-000248-zueoyesj 103 19 Jensen Jensen NNP cord-000248-zueoyesj 103 20 - - HYPH cord-000248-zueoyesj 103 21 Shannon Shannon NNP cord-000248-zueoyesj 103 22 's 's POS cord-000248-zueoyesj 103 23 divergence divergence NN cord-000248-zueoyesj 103 24 from from IN cord-000248-zueoyesj 103 25 a a DT cord-000248-zueoyesj 103 26 uniform uniform JJ cord-000248-zueoyesj 103 27 probability probability NN cord-000248-zueoyesj 103 28 distribution distribution NN cord-000248-zueoyesj 103 29 we -PRON- PRP cord-000248-zueoyesj 103 30 compute compute VBP cord-000248-zueoyesj 103 31 it -PRON- PRP cord-000248-zueoyesj 103 32 against against IN cord-000248-zueoyesj 103 33 an an DT cord-000248-zueoyesj 103 34 ad ad FW cord-000248-zueoyesj 103 35 hoc hoc FW cord-000248-zueoyesj 103 36 probability probability NN cord-000248-zueoyesj 103 37 distribution distribution NN cord-000248-zueoyesj 103 38 functions function NNS cord-000248-zueoyesj 103 39 derived derive VBN cord-000248-zueoyesj 103 40 from from IN cord-000248-zueoyesj 103 41 the the DT cord-000248-zueoyesj 103 42 data datum NNS cord-000248-zueoyesj 103 43 . . . cord-000248-zueoyesj 104 1 In in IN cord-000248-zueoyesj 104 2 this this DT cord-000248-zueoyesj 104 3 sense sense NN cord-000248-zueoyesj 104 4 , , , cord-000248-zueoyesj 104 5 these these DT cord-000248-zueoyesj 104 6 measures measure NNS cord-000248-zueoyesj 104 7 are be VBP cord-000248-zueoyesj 104 8 more more RBR cord-000248-zueoyesj 104 9 supervised supervise VBN cord-000248-zueoyesj 104 10 then then RB cord-000248-zueoyesj 104 11 the the DT cord-000248-zueoyesj 104 12 MPR MPR NNP cord-000248-zueoyesj 104 13 - - HYPH cord-000248-zueoyesj 104 14 Statistical Statistical NNP cord-000248-zueoyesj 104 15 Complexity Complexity NNP cord-000248-zueoyesj 104 16 is be VBZ cord-000248-zueoyesj 104 17 . . . cord-000248-zueoyesj 105 1 Another another DT cord-000248-zueoyesj 105 2 perspective perspective NN cord-000248-zueoyesj 105 3 is be VBZ cord-000248-zueoyesj 105 4 that that IN cord-000248-zueoyesj 105 5 the the DT cord-000248-zueoyesj 105 6 MPR MPR NNP cord-000248-zueoyesj 105 7 - - HYPH cord-000248-zueoyesj 105 8 Statistical Statistical NNP cord-000248-zueoyesj 105 9 Complexity Complexity NNP cord-000248-zueoyesj 105 10 is be VBZ cord-000248-zueoyesj 105 11 a a DT cord-000248-zueoyesj 105 12 special special JJ cord-000248-zueoyesj 105 13 case case NN cord-000248-zueoyesj 105 14 of of IN cord-000248-zueoyesj 105 15 this this DT cord-000248-zueoyesj 105 16 measure measure NN cord-000248-zueoyesj 105 17 in in IN cord-000248-zueoyesj 105 18 which which WDT cord-000248-zueoyesj 105 19 the the DT cord-000248-zueoyesj 105 20 ad ad FW cord-000248-zueoyesj 105 21 hoc hoc FW cord-000248-zueoyesj 105 22 probability probability NN cord-000248-zueoyesj 105 23 distribution distribution NN cord-000248-zueoyesj 105 24 function function NN cord-000248-zueoyesj 105 25 of of IN cord-000248-zueoyesj 105 26 reference reference NN cord-000248-zueoyesj 105 27 is be VBZ cord-000248-zueoyesj 105 28 the the DT cord-000248-zueoyesj 105 29 equiprobability equiprobability NN cord-000248-zueoyesj 105 30 distribution distribution NN cord-000248-zueoyesj 105 31 . . . cord-000248-zueoyesj 106 1 The the DT cord-000248-zueoyesj 106 2 relevance relevance NN cord-000248-zueoyesj 106 3 of of IN cord-000248-zueoyesj 106 4 this this DT cord-000248-zueoyesj 106 5 measure measure NN cord-000248-zueoyesj 106 6 derives derive VBZ cord-000248-zueoyesj 106 7 from from IN cord-000248-zueoyesj 106 8 being be VBG cord-000248-zueoyesj 106 9 a a DT cord-000248-zueoyesj 106 10 general general JJ cord-000248-zueoyesj 106 11 definition definition NN cord-000248-zueoyesj 106 12 that that WDT cord-000248-zueoyesj 106 13 allows allow VBZ cord-000248-zueoyesj 106 14 [ [ -LRB- cord-000248-zueoyesj 106 15 44 44 CD cord-000248-zueoyesj 106 16 ] ] -RRB- cord-000248-zueoyesj 106 17 . . . cord-000248-zueoyesj 107 1 Metastatic metastatic JJ cord-000248-zueoyesj 107 2 samples sample NNS cord-000248-zueoyesj 107 3 have have VBP cord-000248-zueoyesj 107 4 typically typically RB cord-000248-zueoyesj 107 5 lower low JJR cord-000248-zueoyesj 107 6 values value NNS cord-000248-zueoyesj 107 7 of of IN cord-000248-zueoyesj 107 8 Normalized Normalized NNP cord-000248-zueoyesj 107 9 Shannon Shannon NNP cord-000248-zueoyesj 107 10 Entropy Entropy NNP cord-000248-zueoyesj 107 11 than than IN cord-000248-zueoyesj 107 12 normal normal JJ cord-000248-zueoyesj 107 13 samples sample NNS cord-000248-zueoyesj 107 14 and and CC cord-000248-zueoyesj 107 15 prostate prostate NN cord-000248-zueoyesj 107 16 cancer cancer NN cord-000248-zueoyesj 107 17 primary primary JJ cord-000248-zueoyesj 107 18 tumors tumor NNS cord-000248-zueoyesj 107 19 . . . cord-000248-zueoyesj 108 1 The the DT cord-000248-zueoyesj 108 2 reduction reduction NN cord-000248-zueoyesj 108 3 in in IN cord-000248-zueoyesj 108 4 Normalized Normalized NNP cord-000248-zueoyesj 108 5 Shannon Shannon NNP cord-000248-zueoyesj 108 6 Entropy Entropy NNP cord-000248-zueoyesj 108 7 indicates indicate VBZ cord-000248-zueoyesj 108 8 that that IN cord-000248-zueoyesj 108 9 there there EX cord-000248-zueoyesj 108 10 exists exist VBZ cord-000248-zueoyesj 108 11 a a DT cord-000248-zueoyesj 108 12 significant significant JJ cord-000248-zueoyesj 108 13 reduction reduction NN cord-000248-zueoyesj 108 14 on on IN cord-000248-zueoyesj 108 15 the the DT cord-000248-zueoyesj 108 16 expression expression NN cord-000248-zueoyesj 108 17 of of IN cord-000248-zueoyesj 108 18 a a DT cord-000248-zueoyesj 108 19 large large JJ cord-000248-zueoyesj 108 20 number number NN cord-000248-zueoyesj 108 21 of of IN cord-000248-zueoyesj 108 22 genes gene NNS cord-000248-zueoyesj 108 23 , , , cord-000248-zueoyesj 108 24 or or CC cord-000248-zueoyesj 108 25 that that IN cord-000248-zueoyesj 108 26 the the DT cord-000248-zueoyesj 108 27 gene gene NN cord-000248-zueoyesj 108 28 profile profile NN cord-000248-zueoyesj 108 29 of of IN cord-000248-zueoyesj 108 30 metastatic metastatic JJ cord-000248-zueoyesj 108 31 samples sample NNS cord-000248-zueoyesj 108 32 has have VBZ cord-000248-zueoyesj 108 33 a a DT cord-000248-zueoyesj 108 34 more more RBR cord-000248-zueoyesj 108 35 ' ' '' cord-000248-zueoyesj 108 36 ' ' '' cord-000248-zueoyesj 108 37 peaked peak VBD cord-000248-zueoyesj 108 38 ' ' '' cord-000248-zueoyesj 108 39 ' ' '' cord-000248-zueoyesj 108 40 distribution distribution NN cord-000248-zueoyesj 108 41 ( ( -LRB- cord-000248-zueoyesj 108 42 due due IN cord-000248-zueoyesj 108 43 to to IN cord-000248-zueoyesj 108 44 the the DT cord-000248-zueoyesj 108 45 upregulation upregulation NN cord-000248-zueoyesj 108 46 of of IN cord-000248-zueoyesj 108 47 a a DT cord-000248-zueoyesj 108 48 selected select VBN cord-000248-zueoyesj 108 49 subset subset NN cord-000248-zueoyesj 108 50 of of IN cord-000248-zueoyesj 108 51 genes gene NNS cord-000248-zueoyesj 108 52 ) ) -RRB- cord-000248-zueoyesj 108 53 . . . cord-000248-zueoyesj 109 1 Both both DT cord-000248-zueoyesj 109 2 possibilities possibility NNS cord-000248-zueoyesj 109 3 just just RB cord-000248-zueoyesj 109 4 cited cite VBN cord-000248-zueoyesj 109 5 are be VBP cord-000248-zueoyesj 109 6 not not RB cord-000248-zueoyesj 109 7 mutually mutually RB cord-000248-zueoyesj 109 8 exclusive exclusive JJ cord-000248-zueoyesj 109 9 . . . cord-000248-zueoyesj 110 1 We -PRON- PRP cord-000248-zueoyesj 110 2 also also RB cord-000248-zueoyesj 110 3 note note VBP cord-000248-zueoyesj 110 4 that that IN cord-000248-zueoyesj 110 5 neither neither CC cord-000248-zueoyesj 110 6 the the DT cord-000248-zueoyesj 110 7 Normalized Normalized NNP cord-000248-zueoyesj 110 8 Shannon Shannon NNP cord-000248-zueoyesj 110 9 Entropy Entropy NNP cord-000248-zueoyesj 110 10 , , , cord-000248-zueoyesj 110 11 nor nor CC cord-000248-zueoyesj 110 12 the the DT cord-000248-zueoyesj 110 13 MPR MPR NNP cord-000248-zueoyesj 110 14 - - HYPH cord-000248-zueoyesj 110 15 Statistical Statistical NNP cord-000248-zueoyesj 110 16 Complexity Complexity NNP cord-000248-zueoyesj 110 17 ( ( -LRB- cord-000248-zueoyesj 110 18 as as IN cord-000248-zueoyesj 110 19 a a DT cord-000248-zueoyesj 110 20 single single JJ cord-000248-zueoyesj 110 21 unsupervised unsupervised JJ cord-000248-zueoyesj 110 22 quantifier quantifier NN cord-000248-zueoyesj 110 23 ) ) -RRB- cord-000248-zueoyesj 110 24 , , , cord-000248-zueoyesj 110 25 can can MD cord-000248-zueoyesj 110 26 help help VB cord-000248-zueoyesj 110 27 differentiate differentiate VB cord-000248-zueoyesj 110 28 between between IN cord-000248-zueoyesj 110 29 tumor tumor NN cord-000248-zueoyesj 110 30 and and CC cord-000248-zueoyesj 110 31 normal normal JJ cord-000248-zueoyesj 110 32 samples sample NNS cord-000248-zueoyesj 110 33 , , , cord-000248-zueoyesj 110 34 indicating indicate VBG cord-000248-zueoyesj 110 35 that that IN cord-000248-zueoyesj 110 36 other other JJ cord-000248-zueoyesj 110 37 Information information NN cord-000248-zueoyesj 110 38 Theory Theory NNP cord-000248-zueoyesj 110 39 quantifiers quantifier NNS cord-000248-zueoyesj 110 40 are be VBP cord-000248-zueoyesj 110 41 required require VBN cord-000248-zueoyesj 110 42 for for IN cord-000248-zueoyesj 110 43 this this DT cord-000248-zueoyesj 110 44 discrimination discrimination NN cord-000248-zueoyesj 110 45 . . . cord-000248-zueoyesj 111 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 112 1 /journal.pone.0012262.g001 /journal.pone.0012262.g001 : cord-000248-zueoyesj 112 2 accommodating accommodate VBG cord-000248-zueoyesj 112 3 several several JJ cord-000248-zueoyesj 112 4 different different JJ cord-000248-zueoyesj 112 5 reference reference NN cord-000248-zueoyesj 112 6 states state NNS cord-000248-zueoyesj 112 7 . . . cord-000248-zueoyesj 113 1 We -PRON- PRP cord-000248-zueoyesj 113 2 will will MD cord-000248-zueoyesj 113 3 use use VB cord-000248-zueoyesj 113 4 it -PRON- PRP cord-000248-zueoyesj 113 5 to to TO cord-000248-zueoyesj 113 6 measure measure VB cord-000248-zueoyesj 113 7 divergences divergence NNS cord-000248-zueoyesj 113 8 to to IN cord-000248-zueoyesj 113 9 the the DT cord-000248-zueoyesj 113 10 ' ' `` cord-000248-zueoyesj 113 11 ' ' `` cord-000248-zueoyesj 113 12 initial initial NN cord-000248-zueoyesj 113 13 ' ' '' cord-000248-zueoyesj 113 14 ' ' '' cord-000248-zueoyesj 113 15 and and CC cord-000248-zueoyesj 113 16 ' ' `` cord-000248-zueoyesj 113 17 ' ' `` cord-000248-zueoyesj 113 18 final final JJ cord-000248-zueoyesj 113 19 ' ' '' cord-000248-zueoyesj 113 20 ' ' '' cord-000248-zueoyesj 113 21 transcriptomic transcriptomic JJ cord-000248-zueoyesj 113 22 states state NNS cord-000248-zueoyesj 113 23 ( ( -LRB- cord-000248-zueoyesj 113 24 two two CD cord-000248-zueoyesj 113 25 states state NNS cord-000248-zueoyesj 113 26 of of IN cord-000248-zueoyesj 113 27 reference reference NN cord-000248-zueoyesj 113 28 ) ) -RRB- cord-000248-zueoyesj 113 29 . . . cord-000248-zueoyesj 114 1 Taken take VBN cord-000248-zueoyesj 114 2 as as IN cord-000248-zueoyesj 114 3 computed compute VBN cord-000248-zueoyesj 114 4 averages average NNS cord-000248-zueoyesj 114 5 over over IN cord-000248-zueoyesj 114 6 normal normal JJ cord-000248-zueoyesj 114 7 samples sample NNS cord-000248-zueoyesj 114 8 , , , cord-000248-zueoyesj 114 9 and and CC cord-000248-zueoyesj 114 10 respectively respectively RB cord-000248-zueoyesj 114 11 metastatic metastatic JJ cord-000248-zueoyesj 114 12 ones one NNS cord-000248-zueoyesj 114 13 , , , cord-000248-zueoyesj 114 14 these these DT cord-000248-zueoyesj 114 15 measures measure NNS cord-000248-zueoyesj 114 16 will will MD cord-000248-zueoyesj 114 17 allow allow VB cord-000248-zueoyesj 114 18 tracking track VBG cord-000248-zueoyesj 114 19 the the DT cord-000248-zueoyesj 114 20 processes process NNS cord-000248-zueoyesj 114 21 of of IN cord-000248-zueoyesj 114 22 differentiation differentiation NN cord-000248-zueoyesj 114 23 of of IN cord-000248-zueoyesj 114 24 a a DT cord-000248-zueoyesj 114 25 cancer cancer NN cord-000248-zueoyesj 114 26 cell cell NN cord-000248-zueoyesj 114 27 from from IN cord-000248-zueoyesj 114 28 a a DT cord-000248-zueoyesj 114 29 particular particular JJ cord-000248-zueoyesj 114 30 tissue tissue NN cord-000248-zueoyesj 114 31 type type NN cord-000248-zueoyesj 114 32 . . . cord-000248-zueoyesj 115 1 For for IN cord-000248-zueoyesj 115 2 example example NN cord-000248-zueoyesj 115 3 , , , cord-000248-zueoyesj 115 4 using use VBG cord-000248-zueoyesj 115 5 Lapointe Lapointe NNP cord-000248-zueoyesj 115 6 et et FW cord-000248-zueoyesj 115 7 al al NNP cord-000248-zueoyesj 115 8 . . NNP cord-000248-zueoyesj 115 9 's 's POS cord-000248-zueoyesj 115 10 dataset dataset NN cord-000248-zueoyesj 115 11 , , , cord-000248-zueoyesj 115 12 the the DT cord-000248-zueoyesj 115 13 M M NNP cord-000248-zueoyesj 115 14 - - HYPH cord-000248-zueoyesj 115 15 Normal normal JJ cord-000248-zueoyesj 115 16 statistical statistical JJ cord-000248-zueoyesj 115 17 complexity complexity NN cord-000248-zueoyesj 115 18 quantifier quantifier NN cord-000248-zueoyesj 115 19 first first RB cord-000248-zueoyesj 115 20 requires require VBZ cord-000248-zueoyesj 115 21 the the DT cord-000248-zueoyesj 115 22 computation computation NN cord-000248-zueoyesj 115 23 of of IN cord-000248-zueoyesj 115 24 the the DT cord-000248-zueoyesj 115 25 probability probability NN cord-000248-zueoyesj 115 26 distribution distribution NN cord-000248-zueoyesj 115 27 function function NN cord-000248-zueoyesj 115 28 of of IN cord-000248-zueoyesj 115 29 the the DT cord-000248-zueoyesj 115 30 average average JJ cord-000248-zueoyesj 115 31 gene gene NN cord-000248-zueoyesj 115 32 expression expression NN cord-000248-zueoyesj 115 33 profile profile NN cord-000248-zueoyesj 115 34 of of IN cord-000248-zueoyesj 115 35 all all DT cord-000248-zueoyesj 115 36 normal normal JJ cord-000248-zueoyesj 115 37 prostate prostate NN cord-000248-zueoyesj 115 38 samples sample NNS cord-000248-zueoyesj 115 39 . . . cord-000248-zueoyesj 116 1 Afterwards afterwards RB cord-000248-zueoyesj 116 2 , , , cord-000248-zueoyesj 116 3 the the DT cord-000248-zueoyesj 116 4 Normalized Normalized NNP cord-000248-zueoyesj 116 5 Shannon Shannon NNP cord-000248-zueoyesj 116 6 Entropy Entropy NNP cord-000248-zueoyesj 116 7 and and CC cord-000248-zueoyesj 116 8 the the DT cord-000248-zueoyesj 116 9 Jensen Jensen NNP cord-000248-zueoyesj 116 10 - - HYPH cord-000248-zueoyesj 116 11 Shannon Shannon NNP cord-000248-zueoyesj 116 12 's 's POS cord-000248-zueoyesj 116 13 divergence divergence NN cord-000248-zueoyesj 116 14 of of IN cord-000248-zueoyesj 116 15 any any DT cord-000248-zueoyesj 116 16 sample sample NN cord-000248-zueoyesj 116 17 profile profile NN cord-000248-zueoyesj 116 18 will will MD cord-000248-zueoyesj 116 19 be be VB cord-000248-zueoyesj 116 20 computed compute VBN cord-000248-zueoyesj 116 21 using use VBG cord-000248-zueoyesj 116 22 the the DT cord-000248-zueoyesj 116 23 divergence divergence NN cord-000248-zueoyesj 116 24 to to IN cord-000248-zueoyesj 116 25 that that DT cord-000248-zueoyesj 116 26 averaged average VBD cord-000248-zueoyesj 116 27 normal normal JJ cord-000248-zueoyesj 116 28 distribution distribution NN cord-000248-zueoyesj 116 29 . . . cord-000248-zueoyesj 117 1 Analogously analogously RB cord-000248-zueoyesj 117 2 , , , cord-000248-zueoyesj 117 3 we -PRON- PRP cord-000248-zueoyesj 117 4 compute compute VBP cord-000248-zueoyesj 117 5 the the DT cord-000248-zueoyesj 117 6 M M NNP cord-000248-zueoyesj 117 7 - - HYPH cord-000248-zueoyesj 117 8 Metastases Metastases NNP cord-000248-zueoyesj 117 9 statistical statistical JJ cord-000248-zueoyesj 117 10 complexity complexity NN cord-000248-zueoyesj 117 11 quantifier quantifier NN cord-000248-zueoyesj 117 12 by by IN cord-000248-zueoyesj 117 13 first first JJ cord-000248-zueoyesj 117 14 calculating calculate VBG cord-000248-zueoyesj 117 15 the the DT cord-000248-zueoyesj 117 16 average average JJ cord-000248-zueoyesj 117 17 profile profile NN cord-000248-zueoyesj 117 18 of of IN cord-000248-zueoyesj 117 19 the the DT cord-000248-zueoyesj 117 20 metastases metastasis NNS cord-000248-zueoyesj 117 21 samples sample NNS cord-000248-zueoyesj 117 22 , , , cord-000248-zueoyesj 117 23 and and CC cord-000248-zueoyesj 117 24 then then RB cord-000248-zueoyesj 117 25 generating generate VBG cord-000248-zueoyesj 117 26 the the DT cord-000248-zueoyesj 117 27 corresponding corresponding JJ cord-000248-zueoyesj 117 28 probability probability NN cord-000248-zueoyesj 117 29 distribution distribution NN cord-000248-zueoyesj 117 30 function function NN cord-000248-zueoyesj 117 31 , , , cord-000248-zueoyesj 117 32 finally finally RB cord-000248-zueoyesj 117 33 computing compute VBG cord-000248-zueoyesj 117 34 the the DT cord-000248-zueoyesj 117 35 Jensen Jensen NNP cord-000248-zueoyesj 117 36 - - HYPH cord-000248-zueoyesj 117 37 Shannon Shannon NNP cord-000248-zueoyesj 117 38 's 's POS cord-000248-zueoyesj 117 39 divergence divergence NN cord-000248-zueoyesj 117 40 with with IN cord-000248-zueoyesj 117 41 that that DT cord-000248-zueoyesj 117 42 profile profile NN cord-000248-zueoyesj 117 43 . . . cord-000248-zueoyesj 118 1 We -PRON- PRP cord-000248-zueoyesj 118 2 refer refer VBP cord-000248-zueoyesj 118 3 to to IN cord-000248-zueoyesj 118 4 the the DT cord-000248-zueoyesj 118 5 ' ' `` cord-000248-zueoyesj 118 6 Materials material NNS cord-000248-zueoyesj 118 7 and and CC cord-000248-zueoyesj 118 8 Methods Methods NNPS cord-000248-zueoyesj 118 9 ' ' POS cord-000248-zueoyesj 118 10 section section NN cord-000248-zueoyesj 118 11 for for IN cord-000248-zueoyesj 118 12 details detail NNS cord-000248-zueoyesj 118 13 of of IN cord-000248-zueoyesj 118 14 the the DT cord-000248-zueoyesj 118 15 calculations calculation NNS cord-000248-zueoyesj 118 16 . . . cord-000248-zueoyesj 119 1 The the DT cord-000248-zueoyesj 119 2 results result NNS cord-000248-zueoyesj 119 3 can can MD cord-000248-zueoyesj 119 4 be be VB cord-000248-zueoyesj 119 5 observed observe VBN cord-000248-zueoyesj 119 6 in in IN cord-000248-zueoyesj 119 7 Figure figure NN cord-000248-zueoyesj 119 8 2 2 CD cord-000248-zueoyesj 119 9 . . . cord-000248-zueoyesj 120 1 On on IN cord-000248-zueoyesj 120 2 the the DT cord-000248-zueoyesj 120 3 x x NN cord-000248-zueoyesj 120 4 - - HYPH cord-000248-zueoyesj 120 5 axis axis NN cord-000248-zueoyesj 120 6 , , , cord-000248-zueoyesj 120 7 the the DT cord-000248-zueoyesj 120 8 lymph lymph NN cord-000248-zueoyesj 120 9 node node NN cord-000248-zueoyesj 120 10 metastases metastasis NNS cord-000248-zueoyesj 120 11 have have VBP cord-000248-zueoyesj 120 12 the the DT cord-000248-zueoyesj 120 13 largest large JJS cord-000248-zueoyesj 120 14 values value NNS cord-000248-zueoyesj 120 15 of of IN cord-000248-zueoyesj 120 16 M M NNP cord-000248-zueoyesj 120 17 - - HYPH cord-000248-zueoyesj 120 18 Normal Normal NNP cord-000248-zueoyesj 120 19 indicating indicate VBG cord-000248-zueoyesj 120 20 a a DT cord-000248-zueoyesj 120 21 divergence divergence NN cord-000248-zueoyesj 120 22 from from IN cord-000248-zueoyesj 120 23 the the DT cord-000248-zueoyesj 120 24 normal normal JJ cord-000248-zueoyesj 120 25 profile profile NN cord-000248-zueoyesj 120 26 . . . cord-000248-zueoyesj 121 1 In in IN cord-000248-zueoyesj 121 2 addition addition NN cord-000248-zueoyesj 121 3 , , , cord-000248-zueoyesj 121 4 the the DT cord-000248-zueoyesj 121 5 M M NNP cord-000248-zueoyesj 121 6 - - HYPH cord-000248-zueoyesj 121 7 metastases metastasis NNS cord-000248-zueoyesj 121 8 values value NNS cord-000248-zueoyesj 121 9 of of IN cord-000248-zueoyesj 121 10 normal normal JJ cord-000248-zueoyesj 121 11 samples sample NNS cord-000248-zueoyesj 121 12 tend tend VBP cord-000248-zueoyesj 121 13 to to TO cord-000248-zueoyesj 121 14 be be VB cord-000248-zueoyesj 121 15 higher high JJR cord-000248-zueoyesj 121 16 than than IN cord-000248-zueoyesj 121 17 most most JJS cord-000248-zueoyesj 121 18 of of IN cord-000248-zueoyesj 121 19 the the DT cord-000248-zueoyesj 121 20 metastasis metastasis NN cord-000248-zueoyesj 121 21 samples sample NNS cord-000248-zueoyesj 121 22 ( ( -LRB- cord-000248-zueoyesj 121 23 with with IN cord-000248-zueoyesj 121 24 the the DT cord-000248-zueoyesj 121 25 exception exception NN cord-000248-zueoyesj 121 26 of of IN cord-000248-zueoyesj 121 27 only only RB cord-000248-zueoyesj 121 28 one one CD cord-000248-zueoyesj 121 29 ) ) -RRB- cord-000248-zueoyesj 121 30 . . . cord-000248-zueoyesj 122 1 Figure figure NN cord-000248-zueoyesj 122 2 2 2 CD cord-000248-zueoyesj 122 3 shows show VBZ cord-000248-zueoyesj 122 4 a a DT cord-000248-zueoyesj 122 5 gradual gradual JJ cord-000248-zueoyesj 122 6 progression progression NN cord-000248-zueoyesj 122 7 of of IN cord-000248-zueoyesj 122 8 the the DT cord-000248-zueoyesj 122 9 samples sample NNS cord-000248-zueoyesj 122 10 positions position NNS cord-000248-zueoyesj 122 11 on on IN cord-000248-zueoyesj 122 12 this this DT cord-000248-zueoyesj 122 13 plane plane NN cord-000248-zueoyesj 122 14 from from IN cord-000248-zueoyesj 122 15 a a DT cord-000248-zueoyesj 122 16 well well RB cord-000248-zueoyesj 122 17 - - HYPH cord-000248-zueoyesj 122 18 differentiated differentiate VBN cord-000248-zueoyesj 122 19 tissue tissue NN cord-000248-zueoyesj 122 20 type type NN cord-000248-zueoyesj 122 21 specific specific JJ cord-000248-zueoyesj 122 22 profile profile NN cord-000248-zueoyesj 122 23 , , , cord-000248-zueoyesj 122 24 first first RB cord-000248-zueoyesj 122 25 to to IN cord-000248-zueoyesj 122 26 a a DT cord-000248-zueoyesj 122 27 more more RBR cord-000248-zueoyesj 122 28 heterogeneous heterogeneous JJ cord-000248-zueoyesj 122 29 primary primary JJ cord-000248-zueoyesj 122 30 tumor tumor NN cord-000248-zueoyesj 122 31 cluster cluster NN cord-000248-zueoyesj 122 32 , , , cord-000248-zueoyesj 122 33 and and CC cord-000248-zueoyesj 122 34 finally finally RB cord-000248-zueoyesj 122 35 to to IN cord-000248-zueoyesj 122 36 an an DT cord-000248-zueoyesj 122 37 even even RB cord-000248-zueoyesj 122 38 less less RBR cord-000248-zueoyesj 122 39 differentiated differentiated JJ cord-000248-zueoyesj 122 40 metastatic metastatic JJ cord-000248-zueoyesj 122 41 profile profile NN cord-000248-zueoyesj 122 42 . . . cord-000248-zueoyesj 123 1 The the DT cord-000248-zueoyesj 123 2 result result NN cord-000248-zueoyesj 123 3 presented present VBN cord-000248-zueoyesj 123 4 in in IN cord-000248-zueoyesj 123 5 Figure figure NN cord-000248-zueoyesj 123 6 2 2 CD cord-000248-zueoyesj 123 7 shows show VBZ cord-000248-zueoyesj 123 8 that that IN cord-000248-zueoyesj 123 9 the the DT cord-000248-zueoyesj 123 10 prostate prostate NN cord-000248-zueoyesj 123 11 cancer cancer NN cord-000248-zueoyesj 123 12 samples sample NNS cord-000248-zueoyesj 123 13 , , , cord-000248-zueoyesj 123 14 which which WDT cord-000248-zueoyesj 123 15 are be VBP cord-000248-zueoyesj 123 16 not not RB cord-000248-zueoyesj 123 17 metastases metastasis NNS cord-000248-zueoyesj 123 18 and and CC cord-000248-zueoyesj 123 19 therefore therefore RB cord-000248-zueoyesj 123 20 could could MD cord-000248-zueoyesj 123 21 have have VB cord-000248-zueoyesj 123 22 been be VBN cord-000248-zueoyesj 123 23 scattered scatter VBN cord-000248-zueoyesj 123 24 anywhere anywhere RB cord-000248-zueoyesj 123 25 on on IN cord-000248-zueoyesj 123 26 the the DT cord-000248-zueoyesj 123 27 plane plane NN cord-000248-zueoyesj 123 28 , , , cord-000248-zueoyesj 123 29 are be VBP cord-000248-zueoyesj 123 30 clustered cluster VBN cord-000248-zueoyesj 123 31 on on IN cord-000248-zueoyesj 123 32 a a DT cord-000248-zueoyesj 123 33 particular particular JJ cord-000248-zueoyesj 123 34 confined confine VBN cord-000248-zueoyesj 123 35 area area NN cord-000248-zueoyesj 123 36 between between IN cord-000248-zueoyesj 123 37 the the DT cord-000248-zueoyesj 123 38 two two CD cord-000248-zueoyesj 123 39 other other JJ cord-000248-zueoyesj 123 40 groups group NNS cord-000248-zueoyesj 123 41 . . . cord-000248-zueoyesj 124 1 We -PRON- PRP cord-000248-zueoyesj 124 2 understand understand VBP cord-000248-zueoyesj 124 3 that that IN cord-000248-zueoyesj 124 4 there there EX cord-000248-zueoyesj 124 5 are be VBP cord-000248-zueoyesj 124 6 reasons reason NNS cord-000248-zueoyesj 124 7 to to TO cord-000248-zueoyesj 124 8 be be VB cord-000248-zueoyesj 124 9 sceptical sceptical JJ cord-000248-zueoyesj 124 10 about about IN cord-000248-zueoyesj 124 11 this this DT cord-000248-zueoyesj 124 12 result result NN cord-000248-zueoyesj 124 13 being be VBG cord-000248-zueoyesj 124 14 not not RB cord-000248-zueoyesj 124 15 just just RB cord-000248-zueoyesj 124 16 a a DT cord-000248-zueoyesj 124 17 simple simple JJ cord-000248-zueoyesj 124 18 consequence consequence NN cord-000248-zueoyesj 124 19 of of IN cord-000248-zueoyesj 124 20 the the DT cord-000248-zueoyesj 124 21 gene gene NN cord-000248-zueoyesj 124 22 selection selection NN cord-000248-zueoyesj 124 23 process process NN cord-000248-zueoyesj 124 24 used use VBN cord-000248-zueoyesj 124 25 by by IN cord-000248-zueoyesj 124 26 Lapointe Lapointe NNP cord-000248-zueoyesj 124 27 et et FW cord-000248-zueoyesj 124 28 al al NNP cord-000248-zueoyesj 124 29 . . . cord-000248-zueoyesj 125 1 For for IN cord-000248-zueoyesj 125 2 example example NN cord-000248-zueoyesj 125 3 , , , cord-000248-zueoyesj 125 4 if if IN cord-000248-zueoyesj 125 5 we -PRON- PRP cord-000248-zueoyesj 125 6 assume assume VBP cord-000248-zueoyesj 125 7 that that IN cord-000248-zueoyesj 125 8 the the DT cord-000248-zueoyesj 125 9 5,153 5,153 CD cord-000248-zueoyesj 125 10 probes probe NNS cord-000248-zueoyesj 125 11 singled single VBN cord-000248-zueoyesj 125 12 out out RP cord-000248-zueoyesj 125 13 by by IN cord-000248-zueoyesj 125 14 Lapointe Lapointe NNP cord-000248-zueoyesj 125 15 et et FW cord-000248-zueoyesj 125 16 al al NNP cord-000248-zueoyesj 125 17 . . . cord-000248-zueoyesj 126 1 in in IN cord-000248-zueoyesj 126 2 their -PRON- PRP$ cord-000248-zueoyesj 126 3 figure figure NN cord-000248-zueoyesj 126 4 one one CD cord-000248-zueoyesj 126 5 of of IN cord-000248-zueoyesj 126 6 Ref Ref NNP cord-000248-zueoyesj 126 7 . . . cord-000248-zueoyesj 127 1 [ [ -LRB- cord-000248-zueoyesj 127 2 44 44 CD cord-000248-zueoyesj 127 3 ] ] -RRB- cord-000248-zueoyesj 128 1 ( ( -LRB- cord-000248-zueoyesj 128 2 and and CC cord-000248-zueoyesj 128 3 that that DT cord-000248-zueoyesj 128 4 constitute constitute VBP cord-000248-zueoyesj 128 5 our -PRON- PRP$ cord-000248-zueoyesj 128 6 original original JJ cord-000248-zueoyesj 128 7 data datum NNS cord-000248-zueoyesj 128 8 ) ) -RRB- cord-000248-zueoyesj 128 9 have have VBP cord-000248-zueoyesj 128 10 been be VBN cord-000248-zueoyesj 128 11 selected select VBN cord-000248-zueoyesj 128 12 with with IN cord-000248-zueoyesj 128 13 a a DT cord-000248-zueoyesj 128 14 supervised supervise VBN cord-000248-zueoyesj 128 15 method method NN cord-000248-zueoyesj 128 16 that that WDT cord-000248-zueoyesj 128 17 try try VBP cord-000248-zueoyesj 128 18 to to TO cord-000248-zueoyesj 128 19 distinguish distinguish VB cord-000248-zueoyesj 128 20 between between IN cord-000248-zueoyesj 128 21 normal normal JJ cord-000248-zueoyesj 128 22 and and CC cord-000248-zueoyesj 128 23 metastases metastasis NNS cord-000248-zueoyesj 128 24 , , , cord-000248-zueoyesj 128 25 then then RB cord-000248-zueoyesj 128 26 the the DT cord-000248-zueoyesj 128 27 relative relative JJ cord-000248-zueoyesj 128 28 position position NN cord-000248-zueoyesj 128 29 of of IN cord-000248-zueoyesj 128 30 normal normal JJ cord-000248-zueoyesj 128 31 and and CC cord-000248-zueoyesj 128 32 metastases metastasis NNS cord-000248-zueoyesj 128 33 samples sample NNS cord-000248-zueoyesj 128 34 is be VBZ cord-000248-zueoyesj 128 35 perhaps perhaps RB cord-000248-zueoyesj 128 36 something something NN cord-000248-zueoyesj 128 37 to to TO cord-000248-zueoyesj 128 38 be be VB cord-000248-zueoyesj 128 39 expected expect VBN cord-000248-zueoyesj 128 40 . . . cord-000248-zueoyesj 129 1 However however RB cord-000248-zueoyesj 129 2 , , , cord-000248-zueoyesj 129 3 even even RB cord-000248-zueoyesj 129 4 under under IN cord-000248-zueoyesj 129 5 that that DT cord-000248-zueoyesj 129 6 assumption assumption NN cord-000248-zueoyesj 129 7 , , , cord-000248-zueoyesj 129 8 what what WP cord-000248-zueoyesj 129 9 is be VBZ cord-000248-zueoyesj 129 10 not not RB cord-000248-zueoyesj 129 11 expected expect VBN cord-000248-zueoyesj 129 12 is be VBZ cord-000248-zueoyesj 129 13 the the DT cord-000248-zueoyesj 129 14 position position NN cord-000248-zueoyesj 129 15 of of IN cord-000248-zueoyesj 129 16 all all DT cord-000248-zueoyesj 129 17 primary primary JJ cord-000248-zueoyesj 129 18 tumor tumor NN cord-000248-zueoyesj 129 19 prostate prostate NN cord-000248-zueoyesj 129 20 cancer cancer NN cord-000248-zueoyesj 129 21 samples sample NNS cord-000248-zueoyesj 129 22 , , , cord-000248-zueoyesj 129 23 linking link VBG cord-000248-zueoyesj 129 24 the the DT cord-000248-zueoyesj 129 25 normal normal JJ cord-000248-zueoyesj 129 26 cluster cluster NN cord-000248-zueoyesj 129 27 of of IN cord-000248-zueoyesj 129 28 samples sample NNS cord-000248-zueoyesj 129 29 with with IN cord-000248-zueoyesj 129 30 the the DT cord-000248-zueoyesj 129 31 metastases metastasis NNS cord-000248-zueoyesj 129 32 one one CD cord-000248-zueoyesj 129 33 . . . cord-000248-zueoyesj 130 1 Note note VB cord-000248-zueoyesj 130 2 that that IN cord-000248-zueoyesj 130 3 the the DT cord-000248-zueoyesj 130 4 definition definition NN cord-000248-zueoyesj 130 5 of of IN cord-000248-zueoyesj 130 6 both both CC cord-000248-zueoyesj 130 7 the the DT cord-000248-zueoyesj 130 8 M M NNP cord-000248-zueoyesj 130 9 - - HYPH cord-000248-zueoyesj 130 10 Normal Normal NNP cord-000248-zueoyesj 130 11 and and CC cord-000248-zueoyesj 130 12 M M NNP cord-000248-zueoyesj 130 13 - - HYPH cord-000248-zueoyesj 130 14 Metastases Metastases NNP cord-000248-zueoyesj 130 15 measures measure NNS cord-000248-zueoyesj 130 16 do do VBP cord-000248-zueoyesj 130 17 not not RB cord-000248-zueoyesj 130 18 use use VB cord-000248-zueoyesj 130 19 any any DT cord-000248-zueoyesj 130 20 information information NN cord-000248-zueoyesj 130 21 from from IN cord-000248-zueoyesj 130 22 the the DT cord-000248-zueoyesj 130 23 primary primary JJ cord-000248-zueoyesj 130 24 tumor tumor NN cord-000248-zueoyesj 130 25 prostate prostate NN cord-000248-zueoyesj 130 26 cancer cancer NN cord-000248-zueoyesj 130 27 samples sample NNS cord-000248-zueoyesj 130 28 , , , cord-000248-zueoyesj 130 29 so so IN cord-000248-zueoyesj 130 30 the the DT cord-000248-zueoyesj 130 31 location location NN cord-000248-zueoyesj 130 32 of of IN cord-000248-zueoyesj 130 33 these these DT cord-000248-zueoyesj 130 34 samples sample NNS cord-000248-zueoyesj 130 35 between between IN cord-000248-zueoyesj 130 36 the the DT cord-000248-zueoyesj 130 37 normal normal JJ cord-000248-zueoyesj 130 38 cluster cluster NN cord-000248-zueoyesj 130 39 and and CC cord-000248-zueoyesj 130 40 the the DT cord-000248-zueoyesj 130 41 metastases metastasis NNS cord-000248-zueoyesj 130 42 , , , cord-000248-zueoyesj 130 43 bridging bridge VBG cord-000248-zueoyesj 130 44 them -PRON- PRP cord-000248-zueoyesj 130 45 naturally naturally RB cord-000248-zueoyesj 130 46 is be VBZ cord-000248-zueoyesj 130 47 something something NN cord-000248-zueoyesj 130 48 to to TO cord-000248-zueoyesj 130 49 highlight highlight VB cord-000248-zueoyesj 130 50 . . . cord-000248-zueoyesj 131 1 Together together RB cord-000248-zueoyesj 131 2 with with IN cord-000248-zueoyesj 131 3 Figure figure NN cord-000248-zueoyesj 131 4 1 1 CD cord-000248-zueoyesj 131 5 , , , cord-000248-zueoyesj 131 6 it -PRON- PRP cord-000248-zueoyesj 131 7 gives give VBZ cord-000248-zueoyesj 131 8 evidence evidence NN cord-000248-zueoyesj 131 9 that that WDT cord-000248-zueoyesj 131 10 supports support VBZ cord-000248-zueoyesj 131 11 the the DT cord-000248-zueoyesj 131 12 working work VBG cord-000248-zueoyesj 131 13 hypothesis hypothesis NN cord-000248-zueoyesj 131 14 that that IN cord-000248-zueoyesj 131 15 a a DT cord-000248-zueoyesj 131 16 gradual gradual JJ cord-000248-zueoyesj 131 17 ' ' '' cord-000248-zueoyesj 131 18 ' ' `` cord-000248-zueoyesj 131 19 progression progression NN cord-000248-zueoyesj 131 20 ' ' '' cord-000248-zueoyesj 131 21 ' ' '' cord-000248-zueoyesj 131 22 occurs occur NNS cord-000248-zueoyesj 131 23 , , , cord-000248-zueoyesj 131 24 from from IN cord-000248-zueoyesj 131 25 the the DT cord-000248-zueoyesj 131 26 normal normal JJ cord-000248-zueoyesj 131 27 tissue tissue NN cord-000248-zueoyesj 131 28 specific specific JJ cord-000248-zueoyesj 131 29 profile profile NN cord-000248-zueoyesj 131 30 to to IN cord-000248-zueoyesj 131 31 the the DT cord-000248-zueoyesj 131 32 metastasis metastasis NN cord-000248-zueoyesj 131 33 one one CD cord-000248-zueoyesj 131 34 . . . cord-000248-zueoyesj 132 1 Indeed indeed RB cord-000248-zueoyesj 132 2 , , , cord-000248-zueoyesj 132 3 following follow VBG cord-000248-zueoyesj 132 4 our -PRON- PRP$ cord-000248-zueoyesj 132 5 line line NN cord-000248-zueoyesj 132 6 of of IN cord-000248-zueoyesj 132 7 argument argument NN cord-000248-zueoyesj 132 8 , , , cord-000248-zueoyesj 132 9 Figure figure NN cord-000248-zueoyesj 132 10 2 2 CD cord-000248-zueoyesj 132 11 has have VBZ cord-000248-zueoyesj 132 12 even even RB cord-000248-zueoyesj 132 13 more more JJR cord-000248-zueoyesj 132 14 relevance relevance NN cord-000248-zueoyesj 132 15 when when WRB cord-000248-zueoyesj 132 16 we -PRON- PRP cord-000248-zueoyesj 132 17 highlight highlight VBP cord-000248-zueoyesj 132 18 the the DT cord-000248-zueoyesj 132 19 fact fact NN cord-000248-zueoyesj 132 20 that that IN cord-000248-zueoyesj 132 21 the the DT cord-000248-zueoyesj 132 22 5,153 5,153 CD cord-000248-zueoyesj 132 23 probes probe NNS cord-000248-zueoyesj 132 24 have have VBP cord-000248-zueoyesj 132 25 not not RB cord-000248-zueoyesj 132 26 been be VBN cord-000248-zueoyesj 132 27 selected select VBN cord-000248-zueoyesj 132 28 with with IN cord-000248-zueoyesj 132 29 a a DT cord-000248-zueoyesj 132 30 supervised supervise VBN cord-000248-zueoyesj 132 31 method method NN cord-000248-zueoyesj 132 32 . . . cord-000248-zueoyesj 133 1 The the DT cord-000248-zueoyesj 133 2 authors author NNS cord-000248-zueoyesj 133 3 say say VBP cord-000248-zueoyesj 133 4 that that IN cord-000248-zueoyesj 133 5 the the DT cord-000248-zueoyesj 133 6 only only JJ cord-000248-zueoyesj 133 7 selection selection NN cord-000248-zueoyesj 133 8 criteria criterion NNS cord-000248-zueoyesj 133 9 was be VBD cord-000248-zueoyesj 133 10 to to TO cord-000248-zueoyesj 133 11 single single VB cord-000248-zueoyesj 133 12 out out RP cord-000248-zueoyesj 133 13 the the DT cord-000248-zueoyesj 133 14 5,153 5,153 CD cord-000248-zueoyesj 133 15 cDNAs cDNAs NNPS cord-000248-zueoyesj 133 16 whose whose WP$ cord-000248-zueoyesj 133 17 expression expression NN cord-000248-zueoyesj 133 18 varied vary VBD cord-000248-zueoyesj 133 19 most most RBS cord-000248-zueoyesj 133 20 across across IN cord-000248-zueoyesj 133 21 samples sample NNS cord-000248-zueoyesj 133 22 . . . cord-000248-zueoyesj 134 1 In in IN cord-000248-zueoyesj 134 2 the the DT cord-000248-zueoyesj 134 3 supplementary supplementary JJ cord-000248-zueoyesj 134 4 notes note NNS cord-000248-zueoyesj 134 5 of of IN cord-000248-zueoyesj 134 6 their -PRON- PRP$ cord-000248-zueoyesj 134 7 paper paper NN cord-000248-zueoyesj 134 8 the the DT cord-000248-zueoyesj 134 9 authors author NNS cord-000248-zueoyesj 134 10 say say VBP cord-000248-zueoyesj 134 11 : : : cord-000248-zueoyesj 134 12 ' ' '' cord-000248-zueoyesj 134 13 ' ' '' cord-000248-zueoyesj 134 14 We -PRON- PRP cord-000248-zueoyesj 134 15 included include VBD cord-000248-zueoyesj 134 16 for for IN cord-000248-zueoyesj 134 17 subsequent subsequent JJ cord-000248-zueoyesj 134 18 analysis analysis NN cord-000248-zueoyesj 134 19 only only RB cord-000248-zueoyesj 134 20 well well RB cord-000248-zueoyesj 134 21 measured measure VBN cord-000248-zueoyesj 134 22 genes gene NNS cord-000248-zueoyesj 134 23 whose whose WP$ cord-000248-zueoyesj 134 24 expression expression NN cord-000248-zueoyesj 134 25 varied vary VBN cord-000248-zueoyesj 134 26 , , , cord-000248-zueoyesj 134 27 as as IN cord-000248-zueoyesj 134 28 determined determine VBN cord-000248-zueoyesj 134 29 by by IN cord-000248-zueoyesj 134 30 ( ( -LRB- cord-000248-zueoyesj 134 31 1 1 CD cord-000248-zueoyesj 134 32 ) ) -RRB- cord-000248-zueoyesj 134 33 signal signal JJ cord-000248-zueoyesj 134 34 intensity intensity NN cord-000248-zueoyesj 134 35 over over IN cord-000248-zueoyesj 134 36 background background NN cord-000248-zueoyesj 134 37 .1.5-fold .1.5-fold . cord-000248-zueoyesj 135 1 in in IN cord-000248-zueoyesj 135 2 both both DT cord-000248-zueoyesj 135 3 test test NN cord-000248-zueoyesj 135 4 and and CC cord-000248-zueoyesj 135 5 reference reference NN cord-000248-zueoyesj 135 6 channels channel NNS cord-000248-zueoyesj 135 7 in in IN cord-000248-zueoyesj 135 8 at at RB cord-000248-zueoyesj 135 9 least least RBS cord-000248-zueoyesj 135 10 75 75 CD cord-000248-zueoyesj 135 11 % % NN cord-000248-zueoyesj 135 12 of of IN cord-000248-zueoyesj 135 13 samples sample NNS cord-000248-zueoyesj 135 14 , , , cord-000248-zueoyesj 135 15 and and CC cord-000248-zueoyesj 135 16 ( ( -LRB- cord-000248-zueoyesj 135 17 2 2 LS cord-000248-zueoyesj 135 18 ) ) -RRB- cord-000248-zueoyesj 135 19 3-fold 3-fold CD cord-000248-zueoyesj 135 20 ratio ratio NN cord-000248-zueoyesj 135 21 variation variation NN cord-000248-zueoyesj 135 22 from from IN cord-000248-zueoyesj 135 23 the the DT cord-000248-zueoyesj 135 24 mean mean NN cord-000248-zueoyesj 135 25 in in IN cord-000248-zueoyesj 135 26 at at RB cord-000248-zueoyesj 135 27 least least RBS cord-000248-zueoyesj 135 28 two two CD cord-000248-zueoyesj 135 29 samples sample NNS cord-000248-zueoyesj 135 30 ; ; : cord-000248-zueoyesj 135 31 5,153 5,153 CD cord-000248-zueoyesj 135 32 genes gene NNS cord-000248-zueoyesj 135 33 met meet VBD cord-000248-zueoyesj 135 34 these these DT cord-000248-zueoyesj 135 35 criteria criterion NNS cord-000248-zueoyesj 135 36 . . . cord-000248-zueoyesj 135 37 ' ' '' cord-000248-zueoyesj 135 38 ' ' '' cord-000248-zueoyesj 136 1 As as IN cord-000248-zueoyesj 136 2 a a DT cord-000248-zueoyesj 136 3 consequence consequence NN cord-000248-zueoyesj 136 4 , , , cord-000248-zueoyesj 136 5 Figure figure NN cord-000248-zueoyesj 136 6 2 2 CD cord-000248-zueoyesj 136 7 has have VBZ cord-000248-zueoyesj 136 8 been be VBN cord-000248-zueoyesj 136 9 generated generate VBN cord-000248-zueoyesj 136 10 without without IN cord-000248-zueoyesj 136 11 class class NN cord-000248-zueoyesj 136 12 selection selection NN cord-000248-zueoyesj 136 13 bias bias NN cord-000248-zueoyesj 136 14 only only RB cord-000248-zueoyesj 136 15 using use VBG cord-000248-zueoyesj 136 16 the the DT cord-000248-zueoyesj 136 17 genes gene NNS cord-000248-zueoyesj 136 18 that that WDT cord-000248-zueoyesj 136 19 have have VBP cord-000248-zueoyesj 136 20 the the DT cord-000248-zueoyesj 136 21 most most RBS cord-000248-zueoyesj 136 22 varied varied JJ cord-000248-zueoyesj 136 23 expression expression NN cord-000248-zueoyesj 136 24 pattern pattern NN cord-000248-zueoyesj 136 25 . . . cord-000248-zueoyesj 137 1 We -PRON- PRP cord-000248-zueoyesj 137 2 now now RB cord-000248-zueoyesj 137 3 turn turn VBP cord-000248-zueoyesj 137 4 to to IN cord-000248-zueoyesj 137 5 another another DT cord-000248-zueoyesj 137 6 aspect aspect NN cord-000248-zueoyesj 137 7 of of IN cord-000248-zueoyesj 137 8 the the DT cord-000248-zueoyesj 137 9 statistical statistical JJ cord-000248-zueoyesj 137 10 complexity complexity NN cord-000248-zueoyesj 137 11 and and CC cord-000248-zueoyesj 137 12 entropy entropy NN cord-000248-zueoyesj 137 13 analysis analysis NN cord-000248-zueoyesj 137 14 . . . cord-000248-zueoyesj 138 1 We -PRON- PRP cord-000248-zueoyesj 138 2 note note VBP cord-000248-zueoyesj 138 3 that that IN cord-000248-zueoyesj 138 4 Figure figure NN cord-000248-zueoyesj 138 5 2 2 CD cord-000248-zueoyesj 138 6 shows show VBZ cord-000248-zueoyesj 138 7 that that IN cord-000248-zueoyesj 138 8 the the DT cord-000248-zueoyesj 138 9 metastases metastasis NNS cord-000248-zueoyesj 138 10 samples sample NNS cord-000248-zueoyesj 138 11 have have VBP cord-000248-zueoyesj 138 12 a a DT cord-000248-zueoyesj 138 13 clear clear JJ cord-000248-zueoyesj 138 14 reduction reduction NN cord-000248-zueoyesj 138 15 on on IN cord-000248-zueoyesj 138 16 Normalized Normalized NNP cord-000248-zueoyesj 138 17 Shannon Shannon NNP cord-000248-zueoyesj 138 18 Entropy Entropy NNP cord-000248-zueoyesj 138 19 in in IN cord-000248-zueoyesj 138 20 comparison comparison NN cord-000248-zueoyesj 138 21 with with IN cord-000248-zueoyesj 138 22 the the DT cord-000248-zueoyesj 138 23 values value NNS cord-000248-zueoyesj 138 24 observed observe VBN cord-000248-zueoyesj 138 25 for for IN cord-000248-zueoyesj 138 26 the the DT cord-000248-zueoyesj 138 27 normal normal JJ cord-000248-zueoyesj 138 28 samples sample NNS cord-000248-zueoyesj 138 29 . . . cord-000248-zueoyesj 139 1 At at IN cord-000248-zueoyesj 139 2 the the DT cord-000248-zueoyesj 139 3 same same JJ cord-000248-zueoyesj 139 4 time time NN cord-000248-zueoyesj 139 5 , , , cord-000248-zueoyesj 139 6 metastases metastasis NNS cord-000248-zueoyesj 139 7 samples sample NNS cord-000248-zueoyesj 139 8 , , , cord-000248-zueoyesj 139 9 as as IN cord-000248-zueoyesj 139 10 expected expect VBN cord-000248-zueoyesj 139 11 , , , cord-000248-zueoyesj 139 12 have have VBP cord-000248-zueoyesj 139 13 higher high JJR cord-000248-zueoyesj 139 14 Mnormal Mnormal NNP cord-000248-zueoyesj 139 15 complexity complexity NN cord-000248-zueoyesj 139 16 than than IN cord-000248-zueoyesj 139 17 the the DT cord-000248-zueoyesj 139 18 normal normal JJ cord-000248-zueoyesj 139 19 samples sample NNS cord-000248-zueoyesj 139 20 ( ( -LRB- cord-000248-zueoyesj 139 21 Figure figure NN cord-000248-zueoyesj 139 22 2 2 CD cord-000248-zueoyesj 139 23 ) ) -RRB- cord-000248-zueoyesj 139 24 . . . cord-000248-zueoyesj 140 1 It -PRON- PRP cord-000248-zueoyesj 140 2 is be VBZ cord-000248-zueoyesj 140 3 then then RB cord-000248-zueoyesj 140 4 interesting interesting JJ cord-000248-zueoyesj 140 5 to to TO cord-000248-zueoyesj 140 6 evaluate evaluate VB cord-000248-zueoyesj 140 7 the the DT cord-000248-zueoyesj 140 8 value value NN cord-000248-zueoyesj 140 9 of of IN cord-000248-zueoyesj 140 10 the the DT cord-000248-zueoyesj 140 11 Jensen Jensen NNP cord-000248-zueoyesj 140 12 - - HYPH cord-000248-zueoyesj 140 13 Shannon Shannon NNP cord-000248-zueoyesj 140 14 divergence divergence NN cord-000248-zueoyesj 140 15 of of IN cord-000248-zueoyesj 140 16 these these DT cord-000248-zueoyesj 140 17 samples sample NNS cord-000248-zueoyesj 140 18 and and CC cord-000248-zueoyesj 140 19 to to TO cord-000248-zueoyesj 140 20 identify identify VB cord-000248-zueoyesj 140 21 the the DT cord-000248-zueoyesj 140 22 genes gene NNS cord-000248-zueoyesj 140 23 that that WDT cord-000248-zueoyesj 140 24 most most RBS cord-000248-zueoyesj 140 25 correlate correlate VBP cord-000248-zueoyesj 140 26 with with IN cord-000248-zueoyesj 140 27 the the DT cord-000248-zueoyesj 140 28 variations variation NNS cord-000248-zueoyesj 140 29 of of IN cord-000248-zueoyesj 140 30 Jensen Jensen NNP cord-000248-zueoyesj 140 31 - - HYPH cord-000248-zueoyesj 140 32 Shannon Shannon NNP cord-000248-zueoyesj 140 33 divergence divergence NN cord-000248-zueoyesj 140 34 to to TO cord-000248-zueoyesj 140 35 quantify quantify VB cord-000248-zueoyesj 140 36 one one CD cord-000248-zueoyesj 140 37 of of IN cord-000248-zueoyesj 140 38 the the DT cord-000248-zueoyesj 140 39 factors factor NNS cord-000248-zueoyesj 140 40 that that WDT cord-000248-zueoyesj 140 41 is be VBZ cord-000248-zueoyesj 140 42 related relate VBN cord-000248-zueoyesj 140 43 to to IN cord-000248-zueoyesj 140 44 the the DT cord-000248-zueoyesj 140 45 statistical statistical JJ cord-000248-zueoyesj 140 46 complexity complexity NN cord-000248-zueoyesj 140 47 changes change NNS cord-000248-zueoyesj 140 48 . . . cord-000248-zueoyesj 141 1 We -PRON- PRP cord-000248-zueoyesj 141 2 have have VBP cord-000248-zueoyesj 141 3 computed compute VBN cord-000248-zueoyesj 141 4 the the DT cord-000248-zueoyesj 141 5 correlation correlation NN cord-000248-zueoyesj 141 6 of of IN cord-000248-zueoyesj 141 7 the the DT cord-000248-zueoyesj 141 8 gene gene NN cord-000248-zueoyesj 141 9 expression expression NN cord-000248-zueoyesj 141 10 profile profile NN cord-000248-zueoyesj 141 11 corresponding correspond VBG cord-000248-zueoyesj 141 12 to to IN cord-000248-zueoyesj 141 13 each each DT cord-000248-zueoyesj 141 14 of of IN cord-000248-zueoyesj 141 15 the the DT cord-000248-zueoyesj 141 16 5,123 5,123 CD cord-000248-zueoyesj 141 17 probes probe NNS cord-000248-zueoyesj 141 18 . . . cord-000248-zueoyesj 142 1 For for IN cord-000248-zueoyesj 142 2 each each DT cord-000248-zueoyesj 142 3 of of IN cord-000248-zueoyesj 142 4 the the DT cord-000248-zueoyesj 142 5 5,123 5,123 CD cord-000248-zueoyesj 142 6 probes probe NNS cord-000248-zueoyesj 142 7 , , , cord-000248-zueoyesj 142 8 we -PRON- PRP cord-000248-zueoyesj 142 9 computed compute VBD cord-000248-zueoyesj 142 10 both both CC cord-000248-zueoyesj 142 11 the the DT cord-000248-zueoyesj 142 12 Pearson Pearson NNP cord-000248-zueoyesj 142 13 correlation correlation NN cord-000248-zueoyesj 142 14 ( ( -LRB- cord-000248-zueoyesj 142 15 x x NN cord-000248-zueoyesj 142 16 - - NN cord-000248-zueoyesj 142 17 axis axis NN cord-000248-zueoyesj 142 18 of of IN cord-000248-zueoyesj 142 19 Figure figure NN cord-000248-zueoyesj 142 20 3 3 CD cord-000248-zueoyesj 142 21 ) ) -RRB- cord-000248-zueoyesj 142 22 and and CC cord-000248-zueoyesj 142 23 the the DT cord-000248-zueoyesj 142 24 Spearman Spearman NNP cord-000248-zueoyesj 142 25 correlation correlation NN cord-000248-zueoyesj 142 26 ( ( -LRB- cord-000248-zueoyesj 142 27 y y NN cord-000248-zueoyesj 142 28 - - HYPH cord-000248-zueoyesj 142 29 axis axis NN cord-000248-zueoyesj 142 30 of of IN cord-000248-zueoyesj 142 31 Figure figure NN cord-000248-zueoyesj 142 32 3 3 CD cord-000248-zueoyesj 142 33 ) ) -RRB- cord-000248-zueoyesj 142 34 of of IN cord-000248-zueoyesj 142 35 each each DT cord-000248-zueoyesj 142 36 probe probe NN cord-000248-zueoyesj 142 37 profile profile NN cord-000248-zueoyesj 142 38 with with IN cord-000248-zueoyesj 142 39 the the DT cord-000248-zueoyesj 142 40 Jensen Jensen NNP cord-000248-zueoyesj 142 41 - - HYPH cord-000248-zueoyesj 142 42 Shannon Shannon NNP cord-000248-zueoyesj 142 43 divergence divergence NN cord-000248-zueoyesj 142 44 having have VBG cord-000248-zueoyesj 142 45 as as IN cord-000248-zueoyesj 142 46 probability probability NN cord-000248-zueoyesj 142 47 distribution distribution NN cord-000248-zueoyesj 142 48 of of IN cord-000248-zueoyesj 142 49 reference reference NN cord-000248-zueoyesj 142 50 that that DT cord-000248-zueoyesj 142 51 of of IN cord-000248-zueoyesj 142 52 a a DT cord-000248-zueoyesj 142 53 metastasis metastasis NN cord-000248-zueoyesj 142 54 profile profile NN cord-000248-zueoyesj 142 55 ( ( -LRB- cord-000248-zueoyesj 142 56 these these DT cord-000248-zueoyesj 142 57 values value NNS cord-000248-zueoyesj 142 58 are be VBP cord-000248-zueoyesj 142 59 called call VBN cord-000248-zueoyesj 142 60 JSM2-Pearson JSM2-Pearson NNP cord-000248-zueoyesj 142 61 and and CC cord-000248-zueoyesj 142 62 JSM2-Spearman JSM2-Spearman NNP cord-000248-zueoyesj 142 63 in in IN cord-000248-zueoyesj 142 64 the the DT cord-000248-zueoyesj 142 65 accompanying accompany VBG cord-000248-zueoyesj 142 66 Excel Excel NNP cord-000248-zueoyesj 142 67 file file NN cord-000248-zueoyesj 142 68 provided provide VBN cord-000248-zueoyesj 142 69 ) ) -RRB- cord-000248-zueoyesj 142 70 . . . cord-000248-zueoyesj 143 1 With with IN cord-000248-zueoyesj 143 2 this this DT cord-000248-zueoyesj 143 3 data datum NNS cord-000248-zueoyesj 143 4 , , , cord-000248-zueoyesj 143 5 we -PRON- PRP cord-000248-zueoyesj 143 6 have have VBP cord-000248-zueoyesj 143 7 produced produce VBN cord-000248-zueoyesj 143 8 Figure Figure NNP cord-000248-zueoyesj 143 9 3 3 CD cord-000248-zueoyesj 143 10 , , , cord-000248-zueoyesj 143 11 a a DT cord-000248-zueoyesj 143 12 scatter scatter NN cord-000248-zueoyesj 143 13 plot plot NN cord-000248-zueoyesj 143 14 of of IN cord-000248-zueoyesj 143 15 the the DT cord-000248-zueoyesj 143 16 values value NNS cord-000248-zueoyesj 143 17 associated associate VBN cord-000248-zueoyesj 143 18 to to IN cord-000248-zueoyesj 143 19 each each DT cord-000248-zueoyesj 143 20 probe probe NN cord-000248-zueoyesj 143 21 . . . cord-000248-zueoyesj 144 1 In in IN cord-000248-zueoyesj 144 2 this this DT cord-000248-zueoyesj 144 3 figure figure NN cord-000248-zueoyesj 144 4 , , , cord-000248-zueoyesj 144 5 there there EX cord-000248-zueoyesj 144 6 are be VBP cord-000248-zueoyesj 144 7 two two CD cord-000248-zueoyesj 144 8 probes probe NNS cord-000248-zueoyesj 144 9 that that WDT cord-000248-zueoyesj 144 10 are be VBP cord-000248-zueoyesj 144 11 immediately immediately RB cord-000248-zueoyesj 144 12 recognizable recognizable JJ cord-000248-zueoyesj 144 13 by by IN cord-000248-zueoyesj 144 14 any any DT cord-000248-zueoyesj 144 15 cancer cancer NN cord-000248-zueoyesj 144 16 researcher researcher NN cord-000248-zueoyesj 144 17 , , , cord-000248-zueoyesj 144 18 and and CC cord-000248-zueoyesj 144 19 in in IN cord-000248-zueoyesj 144 20 particular particular JJ cord-000248-zueoyesj 144 21 for for IN cord-000248-zueoyesj 144 22 those those DT cord-000248-zueoyesj 144 23 in in IN cord-000248-zueoyesj 144 24 prostate prostate NN cord-000248-zueoyesj 144 25 cancer cancer NN cord-000248-zueoyesj 144 26 : : : cord-000248-zueoyesj 145 1 KLK3 KLK3 NNP cord-000248-zueoyesj 145 2 / / SYM cord-000248-zueoyesj 145 3 PSA PSA NNP cord-000248-zueoyesj 145 4 ( ( -LRB- cord-000248-zueoyesj 145 5 Prostate Prostate NNP cord-000248-zueoyesj 145 6 Specific Specific NNP cord-000248-zueoyesj 145 7 Antigen Antigen NNP cord-000248-zueoyesj 145 8 ) ) -RRB- cord-000248-zueoyesj 145 9 and and CC cord-000248-zueoyesj 145 10 FOS FOS NNP cord-000248-zueoyesj 145 11 . . . cord-000248-zueoyesj 146 1 The the DT cord-000248-zueoyesj 146 2 interpretation interpretation NN cord-000248-zueoyesj 146 3 of of IN cord-000248-zueoyesj 146 4 these these DT cord-000248-zueoyesj 146 5 scatter scatter NN cord-000248-zueoyesj 146 6 plots plot NNS cord-000248-zueoyesj 146 7 is be VBZ cord-000248-zueoyesj 146 8 not not RB cord-000248-zueoyesj 146 9 immediate immediate JJ cord-000248-zueoyesj 146 10 and and CC cord-000248-zueoyesj 146 11 needs need VBZ cord-000248-zueoyesj 146 12 an an DT cord-000248-zueoyesj 146 13 introductory introductory JJ cord-000248-zueoyesj 146 14 explanation explanation NN cord-000248-zueoyesj 146 15 . . . cord-000248-zueoyesj 147 1 Each each DT cord-000248-zueoyesj 147 2 dot dot NN cord-000248-zueoyesj 147 3 corresponds correspond VBZ cord-000248-zueoyesj 147 4 to to IN cord-000248-zueoyesj 147 5 one one CD cord-000248-zueoyesj 147 6 probe probe NN cord-000248-zueoyesj 147 7 of of IN cord-000248-zueoyesj 147 8 the the DT cord-000248-zueoyesj 147 9 array array NN cord-000248-zueoyesj 147 10 . . . cord-000248-zueoyesj 148 1 For for IN cord-000248-zueoyesj 148 2 example example NN cord-000248-zueoyesj 148 3 , , , cord-000248-zueoyesj 148 4 a a DT cord-000248-zueoyesj 148 5 dot dot NN cord-000248-zueoyesj 148 6 that that WDT cord-000248-zueoyesj 148 7 is be VBZ cord-000248-zueoyesj 148 8 very very RB cord-000248-zueoyesj 148 9 close close JJ cord-000248-zueoyesj 148 10 to to IN cord-000248-zueoyesj 148 11 the the DT cord-000248-zueoyesj 148 12 origin origin NN cord-000248-zueoyesj 148 13 of of IN cord-000248-zueoyesj 148 14 coordinates coordinate NNS cord-000248-zueoyesj 148 15 ( ( -LRB- cord-000248-zueoyesj 148 16 0,0 0,0 NFP cord-000248-zueoyesj 148 17 ) ) -RRB- cord-000248-zueoyesj 148 18 indicates indicate VBZ cord-000248-zueoyesj 148 19 a a DT cord-000248-zueoyesj 148 20 probe probe NN cord-000248-zueoyesj 148 21 such such JJ cord-000248-zueoyesj 148 22 that that IN cord-000248-zueoyesj 148 23 its -PRON- PRP$ cord-000248-zueoyesj 148 24 pattern pattern NN cord-000248-zueoyesj 148 25 of of IN cord-000248-zueoyesj 148 26 gene gene NN cord-000248-zueoyesj 148 27 expression expression NN cord-000248-zueoyesj 148 28 ( ( -LRB- cord-000248-zueoyesj 148 29 across across IN cord-000248-zueoyesj 148 30 all all DT cord-000248-zueoyesj 148 31 samples sample NNS cord-000248-zueoyesj 148 32 ) ) -RRB- cord-000248-zueoyesj 148 33 is be VBZ cord-000248-zueoyesj 148 34 not not RB cord-000248-zueoyesj 148 35 correlated correlate VBN cord-000248-zueoyesj 148 36 with with IN cord-000248-zueoyesj 148 37 the the DT cord-000248-zueoyesj 148 38 Jensen Jensen NNP cord-000248-zueoyesj 148 39 - - HYPH cord-000248-zueoyesj 148 40 Shannon Shannon NNP cord-000248-zueoyesj 148 41 divergence divergence NN cord-000248-zueoyesj 148 42 to to IN cord-000248-zueoyesj 148 43 the the DT cord-000248-zueoyesj 148 44 average average JJ cord-000248-zueoyesj 148 45 profile profile NN cord-000248-zueoyesj 148 46 of of IN cord-000248-zueoyesj 148 47 a a DT cord-000248-zueoyesj 148 48 metastasis metastasis NN cord-000248-zueoyesj 148 49 pattern pattern NN cord-000248-zueoyesj 148 50 . . . cord-000248-zueoyesj 149 1 It -PRON- PRP cord-000248-zueoyesj 149 2 is be VBZ cord-000248-zueoyesj 149 3 , , , cord-000248-zueoyesj 149 4 in in IN cord-000248-zueoyesj 149 5 essence essence NN cord-000248-zueoyesj 149 6 , , , cord-000248-zueoyesj 149 7 a a DT cord-000248-zueoyesj 149 8 probe probe NN cord-000248-zueoyesj 149 9 which which WDT cord-000248-zueoyesj 149 10 is be VBZ cord-000248-zueoyesj 149 11 highly highly RB cord-000248-zueoyesj 149 12 uninteresting uninteresting JJ cord-000248-zueoyesj 149 13 in in IN cord-000248-zueoyesj 149 14 this this DT cord-000248-zueoyesj 149 15 regard regard NN cord-000248-zueoyesj 149 16 . . . cord-000248-zueoyesj 150 1 Probes probe NNS cord-000248-zueoyesj 150 2 that that WDT cord-000248-zueoyesj 150 3 have have VBP cord-000248-zueoyesj 150 4 a a DT cord-000248-zueoyesj 150 5 high high JJ cord-000248-zueoyesj 150 6 correlation correlation NN cord-000248-zueoyesj 150 7 , , , cord-000248-zueoyesj 150 8 across across IN cord-000248-zueoyesj 150 9 all all DT cord-000248-zueoyesj 150 10 samples sample NNS cord-000248-zueoyesj 150 11 , , , cord-000248-zueoyesj 150 12 either either CC cord-000248-zueoyesj 150 13 positive positive JJ cord-000248-zueoyesj 150 14 or or CC cord-000248-zueoyesj 150 15 negative negative JJ cord-000248-zueoyesj 150 16 with with IN cord-000248-zueoyesj 150 17 the the DT cord-000248-zueoyesj 150 18 Jensen Jensen NNP cord-000248-zueoyesj 150 19 - - HYPH cord-000248-zueoyesj 150 20 Shannon Shannon NNP cord-000248-zueoyesj 150 21 divergence divergence NN cord-000248-zueoyesj 150 22 to to IN cord-000248-zueoyesj 150 23 the the DT cord-000248-zueoyesj 150 24 average average JJ cord-000248-zueoyesj 150 25 profile profile NN cord-000248-zueoyesj 150 26 of of IN cord-000248-zueoyesj 150 27 a a DT cord-000248-zueoyesj 150 28 metastasis metastasis NN cord-000248-zueoyesj 150 29 pattern pattern NN cord-000248-zueoyesj 150 30 are be VBP cord-000248-zueoyesj 150 31 highly highly RB cord-000248-zueoyesj 150 32 informative informative JJ cord-000248-zueoyesj 150 33 . . . cord-000248-zueoyesj 151 1 They -PRON- PRP cord-000248-zueoyesj 151 2 ' ' VBD cord-000248-zueoyesj 151 3 ' ' `` cord-000248-zueoyesj 151 4 co co JJ cord-000248-zueoyesj 151 5 - - VB cord-000248-zueoyesj 151 6 express express JJ cord-000248-zueoyesj 151 7 ' ' '' cord-000248-zueoyesj 151 8 ' ' '' cord-000248-zueoyesj 151 9 with with IN cord-000248-zueoyesj 151 10 this this DT cord-000248-zueoyesj 151 11 measure measure NN cord-000248-zueoyesj 151 12 . . . cord-000248-zueoyesj 152 1 Although although IN cord-000248-zueoyesj 152 2 we -PRON- PRP cord-000248-zueoyesj 152 3 provide provide VBP cord-000248-zueoyesj 152 4 in in IN cord-000248-zueoyesj 152 5 the the DT cord-000248-zueoyesj 152 6 supplementary supplementary JJ cord-000248-zueoyesj 152 7 material material NN cord-000248-zueoyesj 152 8 the the DT cord-000248-zueoyesj 152 9 information information NN cord-000248-zueoyesj 152 10 corresponding correspond VBG cord-000248-zueoyesj 152 11 to to IN cord-000248-zueoyesj 152 12 all all DT cord-000248-zueoyesj 152 13 probes probe NNS cord-000248-zueoyesj 152 14 , , , cord-000248-zueoyesj 152 15 we -PRON- PRP cord-000248-zueoyesj 152 16 will will MD cord-000248-zueoyesj 152 17 discuss discuss VB cord-000248-zueoyesj 152 18 just just RB cord-000248-zueoyesj 152 19 a a DT cord-000248-zueoyesj 152 20 few few JJ cord-000248-zueoyesj 152 21 of of IN cord-000248-zueoyesj 152 22 them -PRON- PRP cord-000248-zueoyesj 152 23 . . . cord-000248-zueoyesj 153 1 This this DT cord-000248-zueoyesj 153 2 will will MD cord-000248-zueoyesj 153 3 allow allow VB cord-000248-zueoyesj 153 4 the the DT cord-000248-zueoyesj 153 5 reader reader NN cord-000248-zueoyesj 153 6 to to TO cord-000248-zueoyesj 153 7 understand understand VB cord-000248-zueoyesj 153 8 these these DT cord-000248-zueoyesj 153 9 plots plot NNS cord-000248-zueoyesj 153 10 and and CC cord-000248-zueoyesj 153 11 will will MD cord-000248-zueoyesj 153 12 put put VB cord-000248-zueoyesj 153 13 our -PRON- PRP$ cord-000248-zueoyesj 153 14 results result NNS cord-000248-zueoyesj 153 15 in in IN cord-000248-zueoyesj 153 16 the the DT cord-000248-zueoyesj 153 17 perspective perspective NN cord-000248-zueoyesj 153 18 with with IN cord-000248-zueoyesj 153 19 current current JJ cord-000248-zueoyesj 153 20 research research NN cord-000248-zueoyesj 153 21 in in IN cord-000248-zueoyesj 153 22 prostate prostate NN cord-000248-zueoyesj 153 23 cancer cancer NN cord-000248-zueoyesj 153 24 . . . cord-000248-zueoyesj 154 1 We -PRON- PRP cord-000248-zueoyesj 154 2 particularly particularly RB cord-000248-zueoyesj 154 3 highlight highlight VBP cord-000248-zueoyesj 154 4 the the DT cord-000248-zueoyesj 154 5 position position NN cord-000248-zueoyesj 154 6 of of IN cord-000248-zueoyesj 154 7 KLK3/ KLK3/ NNP cord-000248-zueoyesj 154 8 PSA PSA NNP cord-000248-zueoyesj 154 9 , , , cord-000248-zueoyesj 154 10 FOS FOS NNP cord-000248-zueoyesj 154 11 and and CC cord-000248-zueoyesj 154 12 CCL2 CCL2 NNP cord-000248-zueoyesj 154 13 . . . cord-000248-zueoyesj 155 1 To to IN cord-000248-zueoyesj 155 2 our -PRON- PRP$ cord-000248-zueoyesj 155 3 surprise surprise NN cord-000248-zueoyesj 155 4 , , , cord-000248-zueoyesj 155 5 we -PRON- PRP cord-000248-zueoyesj 155 6 have have VBP cord-000248-zueoyesj 155 7 found find VBN cord-000248-zueoyesj 155 8 which which WDT cord-000248-zueoyesj 155 9 is be VBZ cord-000248-zueoyesj 155 10 perhaps perhaps RB cord-000248-zueoyesj 155 11 the the DT cord-000248-zueoyesj 155 12 most most RBS cord-000248-zueoyesj 155 13 famous famous JJ cord-000248-zueoyesj 155 14 biomarker biomarker NN cord-000248-zueoyesj 155 15 in in IN cord-000248-zueoyesj 155 16 prostate prostate NN cord-000248-zueoyesj 155 17 cancer cancer NN cord-000248-zueoyesj 155 18 KLK3/ KLK3/ NNP cord-000248-zueoyesj 155 19 PSA PSA NNP cord-000248-zueoyesj 155 20 ( ( -LRB- cord-000248-zueoyesj 155 21 Kallikrein Kallikrein NNP cord-000248-zueoyesj 155 22 - - HYPH cord-000248-zueoyesj 155 23 related relate VBN cord-000248-zueoyesj 155 24 peptidase peptidase NN cord-000248-zueoyesj 155 25 3 3 CD cord-000248-zueoyesj 155 26 ) ) -RRB- cord-000248-zueoyesj 155 27 , , , cord-000248-zueoyesj 155 28 probe probe NN cord-000248-zueoyesj 155 29 G_914588 G_914588 NNP cord-000248-zueoyesj 155 30 ( ( -LRB- cord-000248-zueoyesj 155 31 correlations correlation NNS cord-000248-zueoyesj 155 32 of of IN cord-000248-zueoyesj 155 33 20.9312 20.9312 CD cord-000248-zueoyesj 155 34 and and CC cord-000248-zueoyesj 155 35 20.9000 20.9000 CD cord-000248-zueoyesj 155 36 respectively respectively RB cord-000248-zueoyesj 155 37 ) ) -RRB- cord-000248-zueoyesj 155 38 . . . cord-000248-zueoyesj 156 1 FOS FOS NNP cord-000248-zueoyesj 156 2 and and CC cord-000248-zueoyesj 156 3 KLK3/ KLK3/ NNP cord-000248-zueoyesj 156 4 PSA PSA NNP cord-000248-zueoyesj 156 5 are be VBP cord-000248-zueoyesj 156 6 the the DT cord-000248-zueoyesj 156 7 second second JJ cord-000248-zueoyesj 156 8 and and CC cord-000248-zueoyesj 156 9 the the DT cord-000248-zueoyesj 156 10 fourth fourth JJ cord-000248-zueoyesj 156 11 most most RBS cord-000248-zueoyesj 156 12 negatively negatively RB cord-000248-zueoyesj 156 13 correlated correlate VBN cord-000248-zueoyesj 156 14 probes probe NNS cord-000248-zueoyesj 156 15 in in IN cord-000248-zueoyesj 156 16 this this DT cord-000248-zueoyesj 156 17 ranking ranking NN cord-000248-zueoyesj 156 18 of of IN cord-000248-zueoyesj 156 19 all all PDT cord-000248-zueoyesj 156 20 the the DT cord-000248-zueoyesj 156 21 genes gene NNS cord-000248-zueoyesj 156 22 in in IN cord-000248-zueoyesj 156 23 the the DT cord-000248-zueoyesj 156 24 microarray microarray NN cord-000248-zueoyesj 156 25 . . . cord-000248-zueoyesj 157 1 With with IN cord-000248-zueoyesj 157 2 opposite opposite JJ cord-000248-zueoyesj 157 3 signs sign NNS cord-000248-zueoyesj 157 4 for for IN cord-000248-zueoyesj 157 5 correlations correlation NNS cord-000248-zueoyesj 157 6 are be VBP cord-000248-zueoyesj 157 7 CDKN2D cdkn2d NN cord-000248-zueoyesj 157 8 , , , cord-000248-zueoyesj 157 9 FOXM1 FOXM1 NNP cord-000248-zueoyesj 157 10 , , , cord-000248-zueoyesj 157 11 and and CC cord-000248-zueoyesj 157 12 BRCA2 brca2 NN cord-000248-zueoyesj 157 13 . . . cord-000248-zueoyesj 158 1 The the DT cord-000248-zueoyesj 158 2 following follow VBG cord-000248-zueoyesj 158 3 is be VBZ cord-000248-zueoyesj 158 4 a a DT cord-000248-zueoyesj 158 5 discussion discussion NN cord-000248-zueoyesj 158 6 of of IN cord-000248-zueoyesj 158 7 a a DT cord-000248-zueoyesj 158 8 selection selection NN cord-000248-zueoyesj 158 9 of of IN cord-000248-zueoyesj 158 10 probes probe NNS cord-000248-zueoyesj 158 11 ( ( -LRB- cord-000248-zueoyesj 158 12 highlighted highlight VBN cord-000248-zueoyesj 158 13 in in IN cord-000248-zueoyesj 158 14 Figure Figure NNP cord-000248-zueoyesj 158 15 3 3 CD cord-000248-zueoyesj 158 16 ) ) -RRB- cord-000248-zueoyesj 158 17 in in IN cord-000248-zueoyesj 158 18 the the DT cord-000248-zueoyesj 158 19 context context NN cord-000248-zueoyesj 158 20 of of IN cord-000248-zueoyesj 158 21 prostate prostate NN cord-000248-zueoyesj 158 22 cancer cancer NN cord-000248-zueoyesj 158 23 . . . cord-000248-zueoyesj 159 1 CDKN2D cdkn2d NN cord-000248-zueoyesj 160 1 ( ( -LRB- cord-000248-zueoyesj 160 2 Cyclin Cyclin NNP cord-000248-zueoyesj 160 3 - - HYPH cord-000248-zueoyesj 160 4 dependent dependent JJ cord-000248-zueoyesj 160 5 kinase kinase NN cord-000248-zueoyesj 160 6 inhibitor inhibitor NN cord-000248-zueoyesj 160 7 2D 2d NN cord-000248-zueoyesj 160 8 , , , cord-000248-zueoyesj 160 9 p19 p19 NN cord-000248-zueoyesj 160 10 , , , cord-000248-zueoyesj 160 11 inhibits inhibit VBZ cord-000248-zueoyesj 160 12 CDK4 CDK4 NNP cord-000248-zueoyesj 160 13 ) ) -RRB- cord-000248-zueoyesj 160 14 . . . cord-000248-zueoyesj 161 1 One one CD cord-000248-zueoyesj 161 2 of of IN cord-000248-zueoyesj 161 3 the the DT cord-000248-zueoyesj 161 4 genes gene NNS cord-000248-zueoyesj 161 5 that that WDT cord-000248-zueoyesj 161 6 has have VBZ cord-000248-zueoyesj 161 7 strong strong JJ cord-000248-zueoyesj 161 8 positive positive JJ cord-000248-zueoyesj 161 9 correlations correlation NNS cord-000248-zueoyesj 161 10 is be VBZ cord-000248-zueoyesj 161 11 CDKN2D cdkn2d NN cord-000248-zueoyesj 161 12 , , , cord-000248-zueoyesj 162 1 ( ( -LRB- cord-000248-zueoyesj 162 2 Cyclin Cyclin NNP cord-000248-zueoyesj 162 3 - - HYPH cord-000248-zueoyesj 162 4 dependent dependent JJ cord-000248-zueoyesj 162 5 kinase kinase NN cord-000248-zueoyesj 162 6 inhibitor inhibitor NN cord-000248-zueoyesj 162 7 2D 2d NN cord-000248-zueoyesj 162 8 , , , cord-000248-zueoyesj 162 9 p19 p19 NN cord-000248-zueoyesj 162 10 , , , cord-000248-zueoyesj 162 11 inhibits inhibit VBZ cord-000248-zueoyesj 162 12 CDK4 CDK4 NNP cord-000248-zueoyesj 162 13 ) ) -RRB- cord-000248-zueoyesj 163 1 ( ( -LRB- cord-000248-zueoyesj 163 2 Pearson Pearson NNP cord-000248-zueoyesj 163 3 correlation correlation NN cord-000248-zueoyesj 163 4 of of IN cord-000248-zueoyesj 163 5 0.7543 0.7543 CD cord-000248-zueoyesj 163 6 , , , cord-000248-zueoyesj 163 7 Spearman Spearman NNP cord-000248-zueoyesj 163 8 correlation correlation NN cord-000248-zueoyesj 163 9 0.6833 0.6833 CD cord-000248-zueoyesj 163 10 ) ) -RRB- cord-000248-zueoyesj 163 11 , , , cord-000248-zueoyesj 163 12 probe probe VBP cord-000248-zueoyesj 163 13 G_145503 G_145503 NNP cord-000248-zueoyesj 163 14 . . . cord-000248-zueoyesj 164 1 A a DT cord-000248-zueoyesj 164 2 gene gene NN cord-000248-zueoyesj 164 3 that that WDT cord-000248-zueoyesj 164 4 shows show VBZ cord-000248-zueoyesj 164 5 a a DT cord-000248-zueoyesj 164 6 positive positive JJ cord-000248-zueoyesj 164 7 correlation correlation NN cord-000248-zueoyesj 164 8 with with IN cord-000248-zueoyesj 164 9 the the DT cord-000248-zueoyesj 164 10 divergence divergence NN cord-000248-zueoyesj 164 11 of of IN cord-000248-zueoyesj 164 12 a a DT cord-000248-zueoyesj 164 13 metastasis metastasis NN cord-000248-zueoyesj 164 14 profile profile NN cord-000248-zueoyesj 164 15 indicates indicate VBZ cord-000248-zueoyesj 164 16 a a DT cord-000248-zueoyesj 164 17 gene gene NN cord-000248-zueoyesj 164 18 that that WDT cord-000248-zueoyesj 164 19 has have VBZ cord-000248-zueoyesj 164 20 a a DT cord-000248-zueoyesj 164 21 putative putative JJ cord-000248-zueoyesj 164 22 reduced reduce VBN cord-000248-zueoyesj 164 23 expression expression NN cord-000248-zueoyesj 164 24 on on IN cord-000248-zueoyesj 164 25 these these DT cord-000248-zueoyesj 164 26 samples sample NNS cord-000248-zueoyesj 164 27 . . . cord-000248-zueoyesj 165 1 CDKN2D cdkn2d NN cord-000248-zueoyesj 165 2 is be VBZ cord-000248-zueoyesj 165 3 a a DT cord-000248-zueoyesj 165 4 known know VBN cord-000248-zueoyesj 165 5 regulator regulator NN cord-000248-zueoyesj 165 6 of of IN cord-000248-zueoyesj 165 7 cell cell NN cord-000248-zueoyesj 165 8 growth growth NN cord-000248-zueoyesj 165 9 regulator regulator NN cord-000248-zueoyesj 165 10 and and CC cord-000248-zueoyesj 165 11 controls control VBZ cord-000248-zueoyesj 165 12 cell cell NN cord-000248-zueoyesj 165 13 cycle cycle NN cord-000248-zueoyesj 165 14 G1 G1 NNP cord-000248-zueoyesj 165 15 progression progression NN cord-000248-zueoyesj 165 16 [ [ -LRB- cord-000248-zueoyesj 165 17 46 46 CD cord-000248-zueoyesj 165 18 , , , cord-000248-zueoyesj 165 19 47 47 CD cord-000248-zueoyesj 165 20 ] ] -RRB- cord-000248-zueoyesj 165 21 . . . cord-000248-zueoyesj 166 1 Loss loss NN cord-000248-zueoyesj 166 2 of of IN cord-000248-zueoyesj 166 3 CDKN2D cdkn2d NN cord-000248-zueoyesj 166 4 in in IN cord-000248-zueoyesj 166 5 cancer cancer NN cord-000248-zueoyesj 166 6 cells cell NNS cord-000248-zueoyesj 166 7 is be VBZ cord-000248-zueoyesj 166 8 one one CD cord-000248-zueoyesj 166 9 event event NN cord-000248-zueoyesj 166 10 which which WDT cord-000248-zueoyesj 166 11 is be VBZ cord-000248-zueoyesj 166 12 generally generally RB cord-000248-zueoyesj 166 13 associated associate VBN cord-000248-zueoyesj 166 14 to to IN cord-000248-zueoyesj 166 15 a a DT cord-000248-zueoyesj 166 16 more more RBR cord-000248-zueoyesj 166 17 malignant malignant JJ cord-000248-zueoyesj 166 18 phenotype phenotype NN cord-000248-zueoyesj 166 19 . . . cord-000248-zueoyesj 167 1 FOXM1 foxm1 UH cord-000248-zueoyesj 167 2 . . . cord-000248-zueoyesj 168 1 Another another DT cord-000248-zueoyesj 168 2 probe probe NN cord-000248-zueoyesj 168 3 that that WDT cord-000248-zueoyesj 168 4 presents present VBZ cord-000248-zueoyesj 168 5 positive positive JJ cord-000248-zueoyesj 168 6 correlations correlation NNS cord-000248-zueoyesj 168 7 is be VBZ cord-000248-zueoyesj 168 8 FOXM1 foxm1 XX cord-000248-zueoyesj 169 1 ( ( -LRB- cord-000248-zueoyesj 169 2 Forkhead Forkhead NNP cord-000248-zueoyesj 169 3 box box NN cord-000248-zueoyesj 169 4 M1 M1 NNP cord-000248-zueoyesj 169 5 ) ) -RRB- cord-000248-zueoyesj 169 6 , , , cord-000248-zueoyesj 169 7 with with IN cord-000248-zueoyesj 169 8 Pearson Pearson NNP cord-000248-zueoyesj 169 9 correlation correlation NN cord-000248-zueoyesj 169 10 of of IN cord-000248-zueoyesj 169 11 0.7039 0.7039 CD cord-000248-zueoyesj 169 12 and and CC cord-000248-zueoyesj 169 13 Spearman Spearman NNP cord-000248-zueoyesj 169 14 correlation correlation NN cord-000248-zueoyesj 169 15 0.7500 0.7500 CD cord-000248-zueoyesj 169 16 ) ) -RRB- cord-000248-zueoyesj 169 17 , , , cord-000248-zueoyesj 169 18 probe probe VBP cord-000248-zueoyesj 169 19 G_564803 G_564803 NNP cord-000248-zueoyesj 169 20 . . . cord-000248-zueoyesj 170 1 It -PRON- PRP cord-000248-zueoyesj 170 2 has have VBZ cord-000248-zueoyesj 170 3 been be VBN cord-000248-zueoyesj 170 4 recently recently RB cord-000248-zueoyesj 170 5 shown show VBN cord-000248-zueoyesj 170 6 that that IN cord-000248-zueoyesj 170 7 the the DT cord-000248-zueoyesj 170 8 depletion depletion NN cord-000248-zueoyesj 170 9 of of IN cord-000248-zueoyesj 170 10 FOXM1 foxm1 NN cord-000248-zueoyesj 170 11 still still RB cord-000248-zueoyesj 170 12 allows allow VBZ cord-000248-zueoyesj 170 13 cells cell NNS cord-000248-zueoyesj 170 14 to to TO cord-000248-zueoyesj 170 15 enter enter VB cord-000248-zueoyesj 170 16 mitosis mitosis NN cord-000248-zueoyesj 170 17 but but CC cord-000248-zueoyesj 170 18 they -PRON- PRP cord-000248-zueoyesj 170 19 are be VBP cord-000248-zueoyesj 170 20 unable unable JJ cord-000248-zueoyesj 170 21 to to TO cord-000248-zueoyesj 170 22 complete complete VB cord-000248-zueoyesj 170 23 cell cell NN cord-000248-zueoyesj 170 24 division division NN cord-000248-zueoyesj 170 25 . . . cord-000248-zueoyesj 171 1 As as IN cord-000248-zueoyesj 171 2 a a DT cord-000248-zueoyesj 171 3 consequence consequence NN cord-000248-zueoyesj 171 4 this this DT cord-000248-zueoyesj 171 5 leads lead VBZ cord-000248-zueoyesj 171 6 to to IN cord-000248-zueoyesj 171 7 mitotic mitotic JJ cord-000248-zueoyesj 171 8 catastrophe catastrophe NN cord-000248-zueoyesj 171 9 or or CC cord-000248-zueoyesj 171 10 endoreduplication endoreduplication NN cord-000248-zueoyesj 171 11 [ [ -LRB- cord-000248-zueoyesj 171 12 48 48 CD cord-000248-zueoyesj 171 13 ] ] -RRB- cord-000248-zueoyesj 171 14 . . . cord-000248-zueoyesj 172 1 FOXM1 FOXM1 NNP cord-000248-zueoyesj 172 2 is be VBZ cord-000248-zueoyesj 172 3 considered consider VBN cord-000248-zueoyesj 172 4 a a DT cord-000248-zueoyesj 172 5 key key JJ cord-000248-zueoyesj 172 6 regulator regulator NN cord-000248-zueoyesj 172 7 of of IN cord-000248-zueoyesj 172 8 a a DT cord-000248-zueoyesj 172 9 transcriptional transcriptional JJ cord-000248-zueoyesj 172 10 cluster cluster NN cord-000248-zueoyesj 172 11 which which WDT cord-000248-zueoyesj 172 12 is be VBZ cord-000248-zueoyesj 172 13 that that DT cord-000248-zueoyesj 172 14 is be VBZ cord-000248-zueoyesj 172 15 essential essential JJ cord-000248-zueoyesj 172 16 for for IN cord-000248-zueoyesj 172 17 proper proper JJ cord-000248-zueoyesj 172 18 execution execution NN cord-000248-zueoyesj 172 19 of of IN cord-000248-zueoyesj 172 20 the the DT cord-000248-zueoyesj 172 21 mitotic mitotic JJ cord-000248-zueoyesj 172 22 program program NN cord-000248-zueoyesj 172 23 and and CC cord-000248-zueoyesj 172 24 the the DT cord-000248-zueoyesj 172 25 control control NN cord-000248-zueoyesj 172 26 of of IN cord-000248-zueoyesj 172 27 chromosomal chromosomal JJ cord-000248-zueoyesj 172 28 stability stability NN cord-000248-zueoyesj 172 29 [ [ -LRB- cord-000248-zueoyesj 172 30 49 49 CD cord-000248-zueoyesj 172 31 ] ] -RRB- cord-000248-zueoyesj 172 32 . . . cord-000248-zueoyesj 173 1 BRCA2 BRCA2 NNP cord-000248-zueoyesj 174 1 -(Breast -(Breast NNP cord-000248-zueoyesj 175 1 cancer cancer NN cord-000248-zueoyesj 175 2 2 2 CD cord-000248-zueoyesj 175 3 , , , cord-000248-zueoyesj 175 4 early early JJ cord-000248-zueoyesj 175 5 onset onset NN cord-000248-zueoyesj 175 6 ) ) -RRB- cord-000248-zueoyesj 175 7 . . . cord-000248-zueoyesj 176 1 Another another DT cord-000248-zueoyesj 176 2 gene gene NN cord-000248-zueoyesj 176 3 with with IN cord-000248-zueoyesj 176 4 positive positive JJ cord-000248-zueoyesj 176 5 correlations correlation NNS cord-000248-zueoyesj 176 6 is be VBZ cord-000248-zueoyesj 176 7 BRCA2 brca2 XX cord-000248-zueoyesj 177 1 ( ( -LRB- cord-000248-zueoyesj 177 2 Breast breast NN cord-000248-zueoyesj 177 3 cancer cancer NN cord-000248-zueoyesj 177 4 2 2 CD cord-000248-zueoyesj 177 5 , , , cord-000248-zueoyesj 177 6 early early JJ cord-000248-zueoyesj 177 7 onset onset NN cord-000248-zueoyesj 177 8 ) ) -RRB- cord-000248-zueoyesj 177 9 , , , cord-000248-zueoyesj 177 10 probe probe NN cord-000248-zueoyesj 177 11 G_193736 G_193736 NNP cord-000248-zueoyesj 177 12 , , , cord-000248-zueoyesj 177 13 with with IN cord-000248-zueoyesj 177 14 Pearson Pearson NNP cord-000248-zueoyesj 177 15 correlation correlation NN cord-000248-zueoyesj 177 16 of of IN cord-000248-zueoyesj 177 17 0.8161 0.8161 CD cord-000248-zueoyesj 177 18 and and CC cord-000248-zueoyesj 177 19 Spearman Spearman NNP cord-000248-zueoyesj 177 20 correlation correlation NN cord-000248-zueoyesj 177 21 0.7333 0.7333 CD cord-000248-zueoyesj 177 22 ) ) -RRB- cord-000248-zueoyesj 177 23 . . . cord-000248-zueoyesj 178 1 While while IN cord-000248-zueoyesj 178 2 the the DT cord-000248-zueoyesj 178 3 loss loss NN cord-000248-zueoyesj 178 4 of of IN cord-000248-zueoyesj 178 5 BRCA2 brca2 NN cord-000248-zueoyesj 178 6 function function NN cord-000248-zueoyesj 178 7 and and CC cord-000248-zueoyesj 178 8 its -PRON- PRP$ cord-000248-zueoyesj 178 9 consequences consequence NNS cord-000248-zueoyesj 178 10 in in IN cord-000248-zueoyesj 178 11 prostate prostate NN cord-000248-zueoyesj 178 12 cancer cancer NN cord-000248-zueoyesj 178 13 is be VBZ cord-000248-zueoyesj 178 14 being be VBG cord-000248-zueoyesj 178 15 reconsidered reconsider VBN cord-000248-zueoyesj 178 16 [ [ -LRB- cord-000248-zueoyesj 178 17 50 50 CD cord-000248-zueoyesj 178 18 , , , cord-000248-zueoyesj 178 19 51 51 CD cord-000248-zueoyesj 178 20 , , , cord-000248-zueoyesj 178 21 52 52 CD cord-000248-zueoyesj 178 22 , , , cord-000248-zueoyesj 178 23 53 53 CD cord-000248-zueoyesj 178 24 ] ] -RRB- cord-000248-zueoyesj 178 25 , , , cord-000248-zueoyesj 178 26 BRCA2 brca2 NN cord-000248-zueoyesj 178 27 is be VBZ cord-000248-zueoyesj 178 28 generally generally RB cord-000248-zueoyesj 178 29 regarded regard VBN cord-000248-zueoyesj 178 30 as as IN cord-000248-zueoyesj 178 31 a a DT cord-000248-zueoyesj 178 32 ' ' '' cord-000248-zueoyesj 178 33 ' ' `` cord-000248-zueoyesj 178 34 tumor tumor NN cord-000248-zueoyesj 178 35 suppressor suppressor NN cord-000248-zueoyesj 178 36 ' ' '' cord-000248-zueoyesj 178 37 ' ' '' cord-000248-zueoyesj 178 38 , , , cord-000248-zueoyesj 178 39 with with IN cord-000248-zueoyesj 178 40 an an DT cord-000248-zueoyesj 178 41 established establish VBN cord-000248-zueoyesj 178 42 role role NN cord-000248-zueoyesj 178 43 in in IN cord-000248-zueoyesj 178 44 maintaining maintain VBG cord-000248-zueoyesj 178 45 genomic genomic JJ cord-000248-zueoyesj 178 46 stability stability NN cord-000248-zueoyesj 178 47 via via IN cord-000248-zueoyesj 178 48 its -PRON- PRP$ cord-000248-zueoyesj 178 49 function function NN cord-000248-zueoyesj 178 50 in in IN cord-000248-zueoyesj 178 51 the the DT cord-000248-zueoyesj 178 52 homologous homologous JJ cord-000248-zueoyesj 178 53 recombination recombination NN cord-000248-zueoyesj 178 54 pathway pathway NN cord-000248-zueoyesj 178 55 for for IN cord-000248-zueoyesj 178 56 double double JJ cord-000248-zueoyesj 178 57 - - HYPH cord-000248-zueoyesj 178 58 strand strand NN cord-000248-zueoyesj 178 59 DNA dna NN cord-000248-zueoyesj 178 60 repair repair NN cord-000248-zueoyesj 178 61 . . . cord-000248-zueoyesj 179 1 This this DT cord-000248-zueoyesj 179 2 result result NN cord-000248-zueoyesj 179 3 is be VBZ cord-000248-zueoyesj 179 4 supporting support VBG cord-000248-zueoyesj 179 5 its -PRON- PRP$ cord-000248-zueoyesj 179 6 proposed propose VBN cord-000248-zueoyesj 179 7 function function NN cord-000248-zueoyesj 179 8 . . . cord-000248-zueoyesj 180 1 Loss loss NN cord-000248-zueoyesj 180 2 of of IN cord-000248-zueoyesj 180 3 BRCA2 brca2 NN cord-000248-zueoyesj 180 4 function function NN cord-000248-zueoyesj 180 5 is be VBZ cord-000248-zueoyesj 180 6 thus thus RB cord-000248-zueoyesj 180 7 a a DT cord-000248-zueoyesj 180 8 warning warning NN cord-000248-zueoyesj 180 9 sign sign NN cord-000248-zueoyesj 180 10 of of IN cord-000248-zueoyesj 180 11 the the DT cord-000248-zueoyesj 180 12 existence existence NN cord-000248-zueoyesj 180 13 of of IN cord-000248-zueoyesj 180 14 error error NN cord-000248-zueoyesj 180 15 prone prone JJ cord-000248-zueoyesj 180 16 cell cell NN cord-000248-zueoyesj 180 17 processes process NNS cord-000248-zueoyesj 180 18 . . . cord-000248-zueoyesj 181 1 In in IN cord-000248-zueoyesj 181 2 prostate prostate NN cord-000248-zueoyesj 181 3 cancer cancer NN cord-000248-zueoyesj 181 4 BRCA2 brca2 NN cord-000248-zueoyesj 181 5 has have VBZ cord-000248-zueoyesj 181 6 been be VBN cord-000248-zueoyesj 181 7 associated associate VBN cord-000248-zueoyesj 181 8 to to IN cord-000248-zueoyesj 181 9 promotion promotion NN cord-000248-zueoyesj 181 10 of of IN cord-000248-zueoyesj 181 11 invasion invasion NN cord-000248-zueoyesj 181 12 through through IN cord-000248-zueoyesj 181 13 upregulation upregulation NN cord-000248-zueoyesj 181 14 of of IN cord-000248-zueoyesj 181 15 MMP9 MMP9 NNP cord-000248-zueoyesj 181 16 [ [ -LRB- cord-000248-zueoyesj 181 17 54 54 CD cord-000248-zueoyesj 181 18 ] ] -RRB- cord-000248-zueoyesj 181 19 . . . cord-000248-zueoyesj 182 1 BRCA2 BRCA2 NNP cord-000248-zueoyesj 183 1 loss loss NN cord-000248-zueoyesj 183 2 of of IN cord-000248-zueoyesj 183 3 function function NN cord-000248-zueoyesj 183 4 due due IN cord-000248-zueoyesj 183 5 to to IN cord-000248-zueoyesj 183 6 mutations mutation NNS cord-000248-zueoyesj 183 7 is be VBZ cord-000248-zueoyesj 183 8 linked link VBN cord-000248-zueoyesj 183 9 to to IN cord-000248-zueoyesj 183 10 poor poor JJ cord-000248-zueoyesj 183 11 survival survival NN cord-000248-zueoyesj 183 12 in in IN cord-000248-zueoyesj 183 13 prostate prostate NN cord-000248-zueoyesj 183 14 cancer cancer NN cord-000248-zueoyesj 183 15 [ [ -LRB- cord-000248-zueoyesj 183 16 55 55 CD cord-000248-zueoyesj 183 17 ] ] -RRB- cord-000248-zueoyesj 183 18 and and CC cord-000248-zueoyesj 183 19 rare rare JJ cord-000248-zueoyesj 183 20 germline germline NN cord-000248-zueoyesj 183 21 mutations mutation NNS cord-000248-zueoyesj 183 22 have have VBP cord-000248-zueoyesj 183 23 been be VBN cord-000248-zueoyesj 183 24 associated associate VBN cord-000248-zueoyesj 183 25 with with IN cord-000248-zueoyesj 183 26 early early JJ cord-000248-zueoyesj 183 27 - - HYPH cord-000248-zueoyesj 183 28 onset onset NN cord-000248-zueoyesj 183 29 of of IN cord-000248-zueoyesj 183 30 prostate prostate NN cord-000248-zueoyesj 183 31 cancer cancer NN cord-000248-zueoyesj 183 32 [ [ -LRB- cord-000248-zueoyesj 183 33 56 56 CD cord-000248-zueoyesj 183 34 ] ] -RRB- cord-000248-zueoyesj 183 35 . . . cord-000248-zueoyesj 184 1 CCL2 CCL2 NNP cord-000248-zueoyesj 184 2 / / SYM cord-000248-zueoyesj 184 3 MCP-1 MCP-1 NNP cord-000248-zueoyesj 184 4 ( ( -LRB- cord-000248-zueoyesj 184 5 chemokine chemokine NN cord-000248-zueoyesj 184 6 ( ( -LRB- cord-000248-zueoyesj 184 7 C C NNP cord-000248-zueoyesj 184 8 - - HYPH cord-000248-zueoyesj 184 9 C C NNP cord-000248-zueoyesj 184 10 motif motif NN cord-000248-zueoyesj 184 11 ) ) -RRB- cord-000248-zueoyesj 184 12 ligand ligand NN cord-000248-zueoyesj 184 13 2 2 CD cord-000248-zueoyesj 184 14 ) ) -RRB- cord-000248-zueoyesj 184 15 . . . cord-000248-zueoyesj 185 1 Bone bone NN cord-000248-zueoyesj 185 2 is be VBZ cord-000248-zueoyesj 185 3 one one CD cord-000248-zueoyesj 185 4 of of IN cord-000248-zueoyesj 185 5 the the DT cord-000248-zueoyesj 185 6 most most RBS cord-000248-zueoyesj 185 7 common common JJ cord-000248-zueoyesj 185 8 sites site NNS cord-000248-zueoyesj 185 9 of of IN cord-000248-zueoyesj 185 10 prostate prostate NN cord-000248-zueoyesj 185 11 cancer cancer NN cord-000248-zueoyesj 185 12 metastasis metastasis NN cord-000248-zueoyesj 185 13 ; ; : cord-000248-zueoyesj 185 14 close close RB cord-000248-zueoyesj 185 15 to to IN cord-000248-zueoyesj 185 16 85 85 CD cord-000248-zueoyesj 185 17 % % NN cord-000248-zueoyesj 185 18 of of IN cord-000248-zueoyesj 185 19 men man NNS cord-000248-zueoyesj 185 20 who who WP cord-000248-zueoyesj 185 21 die die VBP cord-000248-zueoyesj 185 22 of of IN cord-000248-zueoyesj 185 23 prostate prostate NN cord-000248-zueoyesj 185 24 cancer cancer NN cord-000248-zueoyesj 185 25 have have VBP cord-000248-zueoyesj 185 26 bone bone NN cord-000248-zueoyesj 185 27 metastasis metastasis NN cord-000248-zueoyesj 185 28 [ [ -LRB- cord-000248-zueoyesj 185 29 57 57 CD cord-000248-zueoyesj 185 30 ] ] -RRB- cord-000248-zueoyesj 185 31 . . . cord-000248-zueoyesj 186 1 The the DT cord-000248-zueoyesj 186 2 successful successful JJ cord-000248-zueoyesj 186 3 metastatic metastatic JJ cord-000248-zueoyesj 186 4 process process NN cord-000248-zueoyesj 186 5 to to IN cord-000248-zueoyesj 186 6 bone bone NN cord-000248-zueoyesj 186 7 follows follow VBZ cord-000248-zueoyesj 186 8 from from IN cord-000248-zueoyesj 186 9 the the DT cord-000248-zueoyesj 186 10 activation activation NN cord-000248-zueoyesj 186 11 of of IN cord-000248-zueoyesj 186 12 osteoclasts osteoclast NNS cord-000248-zueoyesj 186 13 with with IN cord-000248-zueoyesj 186 14 bone bone NN cord-000248-zueoyesj 186 15 resorption resorption NN cord-000248-zueoyesj 186 16 , , , cord-000248-zueoyesj 186 17 which which WDT cord-000248-zueoyesj 186 18 in in IN cord-000248-zueoyesj 186 19 turns turn VBZ cord-000248-zueoyesj 186 20 leads lead VBZ cord-000248-zueoyesj 186 21 to to IN cord-000248-zueoyesj 186 22 the the DT cord-000248-zueoyesj 186 23 release release NN cord-000248-zueoyesj 186 24 of of IN cord-000248-zueoyesj 186 25 different different JJ cord-000248-zueoyesj 186 26 growth growth NN cord-000248-zueoyesj 186 27 factors factor NNS cord-000248-zueoyesj 186 28 from from IN cord-000248-zueoyesj 186 29 the the DT cord-000248-zueoyesj 186 30 bone bone NN cord-000248-zueoyesj 186 31 matrix matrix NN cord-000248-zueoyesj 186 32 [ [ -LRB- cord-000248-zueoyesj 186 33 58 58 CD cord-000248-zueoyesj 186 34 ] ] -RRB- cord-000248-zueoyesj 186 35 . . . cord-000248-zueoyesj 187 1 CCL2 CCL2 NNP cord-000248-zueoyesj 187 2 has have VBZ cord-000248-zueoyesj 187 3 been be VBN cord-000248-zueoyesj 187 4 previously previously RB cord-000248-zueoyesj 187 5 reported report VBN cord-000248-zueoyesj 187 6 as as IN cord-000248-zueoyesj 187 7 expressed express VBN cord-000248-zueoyesj 187 8 in in IN cord-000248-zueoyesj 187 9 human human JJ cord-000248-zueoyesj 187 10 bone bone NN cord-000248-zueoyesj 187 11 marrow marrow NN cord-000248-zueoyesj 187 12 endothelial endothelial JJ cord-000248-zueoyesj 187 13 cells cell NNS cord-000248-zueoyesj 187 14 ; ; : cord-000248-zueoyesj 187 15 the the DT cord-000248-zueoyesj 187 16 CCL2 CCL2 NNP cord-000248-zueoyesj 187 17 stimulation stimulation NN cord-000248-zueoyesj 187 18 promotes promote VBZ cord-000248-zueoyesj 187 19 prostate prostate NN cord-000248-zueoyesj 187 20 cancer cancer NN cord-000248-zueoyesj 187 21 cell cell NN cord-000248-zueoyesj 187 22 migration migration NN cord-000248-zueoyesj 187 23 and and CC cord-000248-zueoyesj 187 24 proliferation proliferation NN cord-000248-zueoyesj 187 25 [ [ -LRB- cord-000248-zueoyesj 187 26 57 57 CD cord-000248-zueoyesj 187 27 , , , cord-000248-zueoyesj 187 28 59 59 CD cord-000248-zueoyesj 187 29 ] ] -RRB- cord-000248-zueoyesj 187 30 and and CC cord-000248-zueoyesj 187 31 it -PRON- PRP cord-000248-zueoyesj 187 32 has have VBZ cord-000248-zueoyesj 187 33 been be VBN cord-000248-zueoyesj 187 34 proposed propose VBN cord-000248-zueoyesj 187 35 as as IN cord-000248-zueoyesj 187 36 a a DT cord-000248-zueoyesj 187 37 paracrine paracrine NN cord-000248-zueoyesj 187 38 and and CC cord-000248-zueoyesj 187 39 autocrine autocrine NN cord-000248-zueoyesj 187 40 factor factor NN cord-000248-zueoyesj 187 41 for for IN cord-000248-zueoyesj 187 42 invasion invasion NN cord-000248-zueoyesj 187 43 and and CC cord-000248-zueoyesj 187 44 growth growth NN cord-000248-zueoyesj 187 45 of of IN cord-000248-zueoyesj 187 46 prostate prostate NN cord-000248-zueoyesj 187 47 cancer cancer NN cord-000248-zueoyesj 187 48 [ [ -LRB- cord-000248-zueoyesj 187 49 60 60 CD cord-000248-zueoyesj 187 50 ] ] -RRB- cord-000248-zueoyesj 187 51 . . . cord-000248-zueoyesj 188 1 As as IN cord-000248-zueoyesj 188 2 a a DT cord-000248-zueoyesj 188 3 consequence consequence NN cord-000248-zueoyesj 188 4 of of IN cord-000248-zueoyesj 188 5 this this DT cord-000248-zueoyesj 188 6 central central JJ cord-000248-zueoyesj 188 7 role role NN cord-000248-zueoyesj 188 8 in in IN cord-000248-zueoyesj 188 9 the the DT cord-000248-zueoyesj 188 10 tumor tumor NN cord-000248-zueoyesj 188 11 microenvironment microenvironment NN cord-000248-zueoyesj 188 12 , , , cord-000248-zueoyesj 188 13 CCL2 CCL2 NNP cord-000248-zueoyesj 188 14 is be VBZ cord-000248-zueoyesj 188 15 being be VBG cord-000248-zueoyesj 188 16 the the DT cord-000248-zueoyesj 188 17 object object NN cord-000248-zueoyesj 188 18 of of IN cord-000248-zueoyesj 188 19 several several JJ cord-000248-zueoyesj 188 20 studies study NNS cord-000248-zueoyesj 188 21 and and CC cord-000248-zueoyesj 188 22 is be VBZ cord-000248-zueoyesj 188 23 included include VBN cord-000248-zueoyesj 188 24 in in IN cord-000248-zueoyesj 188 25 the the DT cord-000248-zueoyesj 188 26 list list NN cord-000248-zueoyesj 188 27 of of IN cord-000248-zueoyesj 188 28 potential potential JJ cord-000248-zueoyesj 188 29 targets target NNS cord-000248-zueoyesj 188 30 for for IN cord-000248-zueoyesj 188 31 novel novel JJ cord-000248-zueoyesj 188 32 therapies therapy NNS cord-000248-zueoyesj 188 33 [ [ -LRB- cord-000248-zueoyesj 188 34 60 60 CD cord-000248-zueoyesj 188 35 , , , cord-000248-zueoyesj 188 36 61 61 CD cord-000248-zueoyesj 188 37 , , , cord-000248-zueoyesj 188 38 62 62 CD cord-000248-zueoyesj 188 39 , , , cord-000248-zueoyesj 188 40 63 63 CD cord-000248-zueoyesj 188 41 , , , cord-000248-zueoyesj 188 42 64 64 CD cord-000248-zueoyesj 188 43 , , , cord-000248-zueoyesj 188 44 65 65 CD cord-000248-zueoyesj 188 45 , , , cord-000248-zueoyesj 188 46 66 66 CD cord-000248-zueoyesj 188 47 , , , cord-000248-zueoyesj 188 48 67 67 CD cord-000248-zueoyesj 188 49 , , , cord-000248-zueoyesj 188 50 68 68 CD cord-000248-zueoyesj 188 51 , , , cord-000248-zueoyesj 188 52 69 69 CD cord-000248-zueoyesj 188 53 ] ] -RRB- cord-000248-zueoyesj 188 54 . . . cord-000248-zueoyesj 189 1 FOS FOS NNP cord-000248-zueoyesj 189 2 ( ( -LRB- cord-000248-zueoyesj 189 3 V v NN cord-000248-zueoyesj 189 4 - - HYPH cord-000248-zueoyesj 189 5 fos fos NNP cord-000248-zueoyesj 189 6 FBJ FBJ NNP cord-000248-zueoyesj 189 7 murine murine JJ cord-000248-zueoyesj 189 8 osteosarcoma osteosarcoma NN cord-000248-zueoyesj 189 9 viral viral JJ cord-000248-zueoyesj 189 10 oncogene oncogene NN cord-000248-zueoyesj 189 11 homolog homolog NN cord-000248-zueoyesj 189 12 ) ) -RRB- cord-000248-zueoyesj 189 13 . . . cord-000248-zueoyesj 190 1 A a DT cord-000248-zueoyesj 190 2 probe probe NN cord-000248-zueoyesj 190 3 for for IN cord-000248-zueoyesj 190 4 FOS FOS NNP cord-000248-zueoyesj 190 5 ( ( -LRB- cord-000248-zueoyesj 190 6 G_811015 G_811015 NNPS cord-000248-zueoyesj 190 7 ; ; : cord-000248-zueoyesj 190 8 correlations correlation NNS cord-000248-zueoyesj 190 9 of of IN cord-000248-zueoyesj 190 10 20.9380 20.9380 CD cord-000248-zueoyesj 190 11 and and CC cord-000248-zueoyesj 190 12 20.9500 20.9500 CD cord-000248-zueoyesj 190 13 computed compute VBN cord-000248-zueoyesj 190 14 with with IN cord-000248-zueoyesj 190 15 Pearson Pearson NNP cord-000248-zueoyesj 190 16 and and CC cord-000248-zueoyesj 190 17 Spearman Spearman NNP cord-000248-zueoyesj 190 18 ) ) -RRB- cord-000248-zueoyesj 190 19 has have VBZ cord-000248-zueoyesj 190 20 a a DT cord-000248-zueoyesj 190 21 similar similar JJ cord-000248-zueoyesj 190 22 correlation correlation NN cord-000248-zueoyesj 190 23 than than IN cord-000248-zueoyesj 190 24 KLK3 KLK3 NNP cord-000248-zueoyesj 190 25 / / SYM cord-000248-zueoyesj 190 26 PSA PSA NNP cord-000248-zueoyesj 190 27 . . . cord-000248-zueoyesj 191 1 The the DT cord-000248-zueoyesj 191 2 high high JJ cord-000248-zueoyesj 191 3 rank rank NN cord-000248-zueoyesj 191 4 of of IN cord-000248-zueoyesj 191 5 FOS FOS NNP cord-000248-zueoyesj 191 6 was be VBD cord-000248-zueoyesj 191 7 unexpected unexpected JJ cord-000248-zueoyesj 191 8 , , , cord-000248-zueoyesj 191 9 but but CC cord-000248-zueoyesj 191 10 perhaps perhaps RB cord-000248-zueoyesj 191 11 it -PRON- PRP cord-000248-zueoyesj 191 12 is be VBZ cord-000248-zueoyesj 191 13 less less JJR cord-000248-zueoyesj 191 14 of of IN cord-000248-zueoyesj 191 15 a a DT cord-000248-zueoyesj 191 16 surprise surprise NN cord-000248-zueoyesj 191 17 for for IN cord-000248-zueoyesj 191 18 some some DT cord-000248-zueoyesj 191 19 experienced experienced JJ cord-000248-zueoyesj 191 20 researchers researcher NNS cord-000248-zueoyesj 191 21 in in IN cord-000248-zueoyesj 191 22 prostate prostate NN cord-000248-zueoyesj 191 23 cancer cancer NN cord-000248-zueoyesj 191 24 as as IN cord-000248-zueoyesj 191 25 its -PRON- PRP$ cord-000248-zueoyesj 191 26 role role NN cord-000248-zueoyesj 191 27 has have VBZ cord-000248-zueoyesj 191 28 been be VBN cord-000248-zueoyesj 191 29 highlighted highlight VBN cord-000248-zueoyesj 191 30 in in IN cord-000248-zueoyesj 191 31 the the DT cord-000248-zueoyesj 191 32 past past NN cord-000248-zueoyesj 191 33 [ [ -LRB- cord-000248-zueoyesj 191 34 70 70 CD cord-000248-zueoyesj 191 35 , , , cord-000248-zueoyesj 191 36 71 71 CD cord-000248-zueoyesj 191 37 , , , cord-000248-zueoyesj 191 38 72 72 CD cord-000248-zueoyesj 191 39 ] ] -RRB- cord-000248-zueoyesj 191 40 . . . cord-000248-zueoyesj 192 1 Amplification amplification NN cord-000248-zueoyesj 192 2 of of IN cord-000248-zueoyesj 192 3 members member NNS cord-000248-zueoyesj 192 4 of of IN cord-000248-zueoyesj 192 5 the the DT cord-000248-zueoyesj 192 6 MAPK MAPK NNP cord-000248-zueoyesj 192 7 pathway pathway NN cord-000248-zueoyesj 192 8 was be VBD cord-000248-zueoyesj 192 9 associated associate VBN cord-000248-zueoyesj 192 10 with with IN cord-000248-zueoyesj 192 11 androgen androgen NN cord-000248-zueoyesj 192 12 independent independent JJ cord-000248-zueoyesj 192 13 prostate prostate NN cord-000248-zueoyesj 192 14 cancer cancer NN cord-000248-zueoyesj 192 15 , , , cord-000248-zueoyesj 192 16 and and CC cord-000248-zueoyesj 192 17 co co NN cord-000248-zueoyesj 192 18 - - NN cord-000248-zueoyesj 192 19 expression expression NN cord-000248-zueoyesj 192 20 of of IN cord-000248-zueoyesj 192 21 RAF1 RAF1 NNP cord-000248-zueoyesj 192 22 , , , cord-000248-zueoyesj 192 23 ERBB2 ERBB2 NNS cord-000248-zueoyesj 192 24 / / SYM cord-000248-zueoyesj 192 25 HER2 HER2 NNP cord-000248-zueoyesj 192 26 and and CC cord-000248-zueoyesj 192 27 c c NN cord-000248-zueoyesj 192 28 - - : cord-000248-zueoyesj 192 29 FOS FOS NNP cord-000248-zueoyesj 192 30 would would MD cord-000248-zueoyesj 192 31 lead lead VB cord-000248-zueoyesj 192 32 to to IN cord-000248-zueoyesj 192 33 this this DT cord-000248-zueoyesj 192 34 phenotype phenotype NN cord-000248-zueoyesj 192 35 [ [ -LRB- cord-000248-zueoyesj 192 36 73 73 CD cord-000248-zueoyesj 192 37 ] ] -RRB- cord-000248-zueoyesj 192 38 . . . cord-000248-zueoyesj 193 1 We -PRON- PRP cord-000248-zueoyesj 193 2 will will MD cord-000248-zueoyesj 193 3 not not RB cord-000248-zueoyesj 193 4 discuss discuss VB cord-000248-zueoyesj 193 5 in in IN cord-000248-zueoyesj 193 6 depth depth NN cord-000248-zueoyesj 193 7 the the DT cord-000248-zueoyesj 193 8 known know VBN cord-000248-zueoyesj 193 9 relationships relationship NNS cord-000248-zueoyesj 193 10 between between IN cord-000248-zueoyesj 193 11 FOS FOS NNP cord-000248-zueoyesj 193 12 , , , cord-000248-zueoyesj 193 13 Lamin Lamin NNP cord-000248-zueoyesj 193 14 A A NNP cord-000248-zueoyesj 193 15 / / SYM cord-000248-zueoyesj 193 16 C c NN cord-000248-zueoyesj 193 17 and and CC cord-000248-zueoyesj 193 18 prostate prostate NN cord-000248-zueoyesj 193 19 cancer cancer NN cord-000248-zueoyesj 193 20 . . . cord-000248-zueoyesj 194 1 We -PRON- PRP cord-000248-zueoyesj 194 2 leave leave VBP cord-000248-zueoyesj 194 3 this this DT cord-000248-zueoyesj 194 4 discussion discussion NN cord-000248-zueoyesj 194 5 for for IN cord-000248-zueoyesj 194 6 later later RBR cord-000248-zueoyesj 194 7 , , , cord-000248-zueoyesj 194 8 as as IN cord-000248-zueoyesj 194 9 Lamin Lamin NNP cord-000248-zueoyesj 194 10 A A NNP cord-000248-zueoyesj 194 11 / / SYM cord-000248-zueoyesj 194 12 C C NNP cord-000248-zueoyesj 194 13 will will MD cord-000248-zueoyesj 194 14 also also RB cord-000248-zueoyesj 194 15 appear appear VB cord-000248-zueoyesj 194 16 in in IN cord-000248-zueoyesj 194 17 our -PRON- PRP$ cord-000248-zueoyesj 194 18 study study NN cord-000248-zueoyesj 194 19 of of IN cord-000248-zueoyesj 194 20 the the DT cord-000248-zueoyesj 194 21 other other JJ cord-000248-zueoyesj 194 22 prostate prostate NN cord-000248-zueoyesj 194 23 cancer cancer NN cord-000248-zueoyesj 194 24 dataset dataset NN cord-000248-zueoyesj 194 25 studied study VBD cord-000248-zueoyesj 194 26 in in IN cord-000248-zueoyesj 194 27 this this DT cord-000248-zueoyesj 194 28 paper paper NN cord-000248-zueoyesj 194 29 . . . cord-000248-zueoyesj 195 1 Lamin Lamin NNP cord-000248-zueoyesj 195 2 A A NNP cord-000248-zueoyesj 195 3 / / SYM cord-000248-zueoyesj 195 4 C C NNP cord-000248-zueoyesj 195 5 appears appear VBZ cord-000248-zueoyesj 195 6 as as IN cord-000248-zueoyesj 195 7 a a DT cord-000248-zueoyesj 195 8 member member NN cord-000248-zueoyesj 195 9 of of IN cord-000248-zueoyesj 195 10 a a DT cord-000248-zueoyesj 195 11 set set NN cord-000248-zueoyesj 195 12 of of IN cord-000248-zueoyesj 195 13 genes gene NNS cord-000248-zueoyesj 195 14 with with IN cord-000248-zueoyesj 195 15 reduced reduce VBN cord-000248-zueoyesj 195 16 expression expression NN cord-000248-zueoyesj 195 17 for for IN cord-000248-zueoyesj 195 18 higher high JJR cord-000248-zueoyesj 195 19 grade grade NN cord-000248-zueoyesj 195 20 primary primary JJ cord-000248-zueoyesj 195 21 prostate prostate NN cord-000248-zueoyesj 195 22 cancer cancer NN cord-000248-zueoyesj 195 23 samples sample NNS cord-000248-zueoyesj 195 24 ( ( -LRB- cord-000248-zueoyesj 195 25 note note NN cord-000248-zueoyesj 195 26 that that IN cord-000248-zueoyesj 195 27 the the DT cord-000248-zueoyesj 195 28 current current JJ cord-000248-zueoyesj 195 29 analysis analysis NN cord-000248-zueoyesj 195 30 that that WDT cord-000248-zueoyesj 195 31 gave give VBD cord-000248-zueoyesj 195 32 FOS FOS NNP cord-000248-zueoyesj 195 33 as as IN cord-000248-zueoyesj 195 34 a a DT cord-000248-zueoyesj 195 35 biomarker biomarker NN cord-000248-zueoyesj 195 36 is be VBZ cord-000248-zueoyesj 195 37 on on IN cord-000248-zueoyesj 195 38 lymph lymph NN cord-000248-zueoyesj 195 39 node node NN cord-000248-zueoyesj 195 40 metastatic metastatic JJ cord-000248-zueoyesj 195 41 samples sample NNS cord-000248-zueoyesj 195 42 like like IN cord-000248-zueoyesj 195 43 here here RB cord-000248-zueoyesj 195 44 ) ) -RRB- cord-000248-zueoyesj 195 45 . . . cord-000248-zueoyesj 196 1 However however RB cord-000248-zueoyesj 196 2 , , , cord-000248-zueoyesj 196 3 we -PRON- PRP cord-000248-zueoyesj 196 4 would would MD cord-000248-zueoyesj 196 5 like like VB cord-000248-zueoyesj 196 6 to to TO cord-000248-zueoyesj 196 7 point point VB cord-000248-zueoyesj 196 8 out out RP cord-000248-zueoyesj 196 9 a a DT cord-000248-zueoyesj 196 10 connection connection NN cord-000248-zueoyesj 196 11 that that WDT cord-000248-zueoyesj 196 12 is be VBZ cord-000248-zueoyesj 196 13 currently currently RB cord-000248-zueoyesj 196 14 hypothesized hypothesize VBN cord-000248-zueoyesj 196 15 between between IN cord-000248-zueoyesj 196 16 Lamin Lamin NNP cord-000248-zueoyesj 196 17 A A NNP cord-000248-zueoyesj 196 18 / / SYM cord-000248-zueoyesj 196 19 C C NNP cord-000248-zueoyesj 196 20 and and CC cord-000248-zueoyesj 196 21 FOS FOS NNP cord-000248-zueoyesj 196 22 , , , cord-000248-zueoyesj 196 23 the the DT cord-000248-zueoyesj 196 24 gene gene NN cord-000248-zueoyesj 196 25 we -PRON- PRP cord-000248-zueoyesj 196 26 have have VBP cord-000248-zueoyesj 196 27 just just RB cord-000248-zueoyesj 196 28 discussed discuss VBN cord-000248-zueoyesj 196 29 . . . cord-000248-zueoyesj 197 1 Ivorra Ivorra NNP cord-000248-zueoyesj 197 2 et et NNP cord-000248-zueoyesj 197 3 al al NNP cord-000248-zueoyesj 197 4 . . NNP cord-000248-zueoyesj 197 5 have have VBP cord-000248-zueoyesj 197 6 recently recently RB cord-000248-zueoyesj 197 7 proposed propose VBN cord-000248-zueoyesj 197 8 that that IN cord-000248-zueoyesj 197 9 ' ' '' cord-000248-zueoyesj 197 10 ' ' `` cord-000248-zueoyesj 197 11 lamin lamin NN cord-000248-zueoyesj 197 12 A a DT cord-000248-zueoyesj 197 13 overexpression overexpression NN cord-000248-zueoyesj 197 14 causes cause VBZ cord-000248-zueoyesj 197 15 growth growth NN cord-000248-zueoyesj 197 16 arrest arrest NN cord-000248-zueoyesj 197 17 , , , cord-000248-zueoyesj 197 18 and and CC cord-000248-zueoyesj 197 19 ectopic ectopic JJ cord-000248-zueoyesj 197 20 c c NN cord-000248-zueoyesj 197 21 - - : cord-000248-zueoyesj 197 22 Fos Fos NNP cord-000248-zueoyesj 197 23 partially partially RB cord-000248-zueoyesj 197 24 overcomes overcome VBZ cord-000248-zueoyesj 197 25 lamin lamin NNP cord-000248-zueoyesj 197 26 A A NNP cord-000248-zueoyesj 197 27 / / SYM cord-000248-zueoyesj 197 28 C c NN cord-000248-zueoyesj 197 29 - - HYPH cord-000248-zueoyesj 197 30 induced induce VBN cord-000248-zueoyesj 197 31 cell cell NN cord-000248-zueoyesj 197 32 cycle cycle NN cord-000248-zueoyesj 197 33 alterations alteration NNS cord-000248-zueoyesj 197 34 . . . cord-000248-zueoyesj 198 1 We -PRON- PRP cord-000248-zueoyesj 198 2 propose propose VBP cord-000248-zueoyesj 198 3 lamin lamin NNP cord-000248-zueoyesj 198 4 A A NNP cord-000248-zueoyesj 198 5 / / SYM cord-000248-zueoyesj 198 6 C C NNP cord-000248-zueoyesj 198 7 - - HYPH cord-000248-zueoyesj 198 8 mediated mediate VBN cord-000248-zueoyesj 198 9 c c NN cord-000248-zueoyesj 198 10 - - : cord-000248-zueoyesj 198 11 Fos Fos NNP cord-000248-zueoyesj 198 12 sequestration sequestration NN cord-000248-zueoyesj 198 13 at at IN cord-000248-zueoyesj 198 14 the the DT cord-000248-zueoyesj 198 15 nuclear nuclear JJ cord-000248-zueoyesj 198 16 envelope envelope NN cord-000248-zueoyesj 198 17 as as IN cord-000248-zueoyesj 198 18 a a DT cord-000248-zueoyesj 198 19 novel novel JJ cord-000248-zueoyesj 198 20 mechanism mechanism NN cord-000248-zueoyesj 198 21 of of IN cord-000248-zueoyesj 198 22 transcriptional transcriptional JJ cord-000248-zueoyesj 198 23 and and CC cord-000248-zueoyesj 198 24 cell cell NN cord-000248-zueoyesj 198 25 cycle cycle NN cord-000248-zueoyesj 198 26 control control NN cord-000248-zueoyesj 198 27 ' ' '' cord-000248-zueoyesj 198 28 ' ' '' cord-000248-zueoyesj 198 29 [ [ -LRB- cord-000248-zueoyesj 198 30 74 74 CD cord-000248-zueoyesj 198 31 ] ] -RRB- cord-000248-zueoyesj 198 32 . . . cord-000248-zueoyesj 199 1 In in IN cord-000248-zueoyesj 199 2 addition addition NN cord-000248-zueoyesj 199 3 : : : cord-000248-zueoyesj 199 4 ' ' '' cord-000248-zueoyesj 199 5 ' ' '' cord-000248-zueoyesj 199 6 c c NN cord-000248-zueoyesj 199 7 - - : cord-000248-zueoyesj 199 8 Fos Fos NNP cord-000248-zueoyesj 199 9 accumulation accumulation NN cord-000248-zueoyesj 199 10 within within IN cord-000248-zueoyesj 199 11 the the DT cord-000248-zueoyesj 199 12 extraction extraction NN cord-000248-zueoyesj 199 13 - - HYPH cord-000248-zueoyesj 199 14 resistant resistant JJ cord-000248-zueoyesj 199 15 nuclear nuclear JJ cord-000248-zueoyesj 199 16 fraction fraction NN cord-000248-zueoyesj 199 17 ( ( -LRB- cord-000248-zueoyesj 199 18 ERNF ERNF NNP cord-000248-zueoyesj 199 19 ) ) -RRB- cord-000248-zueoyesj 199 20 and and CC cord-000248-zueoyesj 199 21 its -PRON- PRP$ cord-000248-zueoyesj 199 22 interaction interaction NN cord-000248-zueoyesj 199 23 with with IN cord-000248-zueoyesj 199 24 lamin lamin NNP cord-000248-zueoyesj 199 25 A A NNP cord-000248-zueoyesj 199 26 are be VBP cord-000248-zueoyesj 199 27 reduced reduce VBN cord-000248-zueoyesj 199 28 and and CC cord-000248-zueoyesj 199 29 enhanced enhance VBN cord-000248-zueoyesj 199 30 by by IN cord-000248-zueoyesj 199 31 gain gain NN cord-000248-zueoyesj 199 32 - - HYPH cord-000248-zueoyesj 199 33 of of NN cord-000248-zueoyesj 199 34 and and CC cord-000248-zueoyesj 199 35 lossof lossof NNP cord-000248-zueoyesj 199 36 ERK1/2 ERK1/2 NNP cord-000248-zueoyesj 199 37 activity activity NN cord-000248-zueoyesj 199 38 , , , cord-000248-zueoyesj 199 39 respectively respectively RB cord-000248-zueoyesj 199 40 . . . cord-000248-zueoyesj 199 41 ' ' '' cord-000248-zueoyesj 199 42 ' ' '' cord-000248-zueoyesj 200 1 [ [ -LRB- cord-000248-zueoyesj 200 2 75 75 CD cord-000248-zueoyesj 200 3 ] ] -RRB- cord-000248-zueoyesj 200 4 . . . cord-000248-zueoyesj 201 1 These these DT cord-000248-zueoyesj 201 2 novel novel JJ cord-000248-zueoyesj 201 3 interactions interaction NNS cord-000248-zueoyesj 201 4 between between IN cord-000248-zueoyesj 201 5 LMNA LMNA NNP cord-000248-zueoyesj 201 6 and and CC cord-000248-zueoyesj 201 7 FOS FOS NNP cord-000248-zueoyesj 201 8 , , , cord-000248-zueoyesj 201 9 their -PRON- PRP$ cord-000248-zueoyesj 201 10 putative putative JJ cord-000248-zueoyesj 201 11 role role NN cord-000248-zueoyesj 201 12 in in IN cord-000248-zueoyesj 201 13 prostate prostate NN cord-000248-zueoyesj 201 14 cancer cancer NN cord-000248-zueoyesj 201 15 metastasis metastasis NN cord-000248-zueoyesj 201 16 and and CC cord-000248-zueoyesj 201 17 their -PRON- PRP$ cord-000248-zueoyesj 201 18 seemingly seemingly RB cord-000248-zueoyesj 201 19 different different JJ cord-000248-zueoyesj 201 20 behaviours behaviour NNS cord-000248-zueoyesj 201 21 in in IN cord-000248-zueoyesj 202 1 prostate prostate NN cord-000248-zueoyesj 202 2 cancer cancer NN cord-000248-zueoyesj 202 3 lymph lymph NN cord-000248-zueoyesj 202 4 node node NN cord-000248-zueoyesj 202 5 metastases metastasis NNS cord-000248-zueoyesj 202 6 warrant warrant VBP cord-000248-zueoyesj 202 7 further further JJ cord-000248-zueoyesj 202 8 investigation investigation NN cord-000248-zueoyesj 202 9 . . . cord-000248-zueoyesj 203 1 SOX9 SOX9 NNP cord-000248-zueoyesj 203 2 ( ( -LRB- cord-000248-zueoyesj 203 3 SRY sry UH cord-000248-zueoyesj 203 4 ( ( -LRB- cord-000248-zueoyesj 203 5 sex sex NN cord-000248-zueoyesj 203 6 determining determine VBG cord-000248-zueoyesj 203 7 region region NN cord-000248-zueoyesj 203 8 Y)-box Y)-box NNP cord-000248-zueoyesj 203 9 9 9 CD cord-000248-zueoyesj 203 10 ) ) -RRB- cord-000248-zueoyesj 203 11 . . . cord-000248-zueoyesj 204 1 This this DT cord-000248-zueoyesj 204 2 transcription transcription NN cord-000248-zueoyesj 204 3 factor factor NN cord-000248-zueoyesj 204 4 has have VBZ cord-000248-zueoyesj 204 5 been be VBN cord-000248-zueoyesj 204 6 recently recently RB cord-000248-zueoyesj 204 7 identified identify VBN cord-000248-zueoyesj 204 8 as as IN cord-000248-zueoyesj 204 9 having have VBG cord-000248-zueoyesj 204 10 an an DT cord-000248-zueoyesj 204 11 importat importat JJ cord-000248-zueoyesj 204 12 role role NN cord-000248-zueoyesj 204 13 during during IN cord-000248-zueoyesj 204 14 embryogenesis embryogenesis NN cord-000248-zueoyesj 204 15 and and CC cord-000248-zueoyesj 204 16 in in IN cord-000248-zueoyesj 204 17 the the DT cord-000248-zueoyesj 204 18 early early JJ cord-000248-zueoyesj 204 19 stages stage NNS cord-000248-zueoyesj 204 20 of of IN cord-000248-zueoyesj 204 21 prostate prostate NN cord-000248-zueoyesj 204 22 development development NN cord-000248-zueoyesj 204 23 [ [ -LRB- cord-000248-zueoyesj 204 24 76 76 CD cord-000248-zueoyesj 204 25 , , , cord-000248-zueoyesj 204 26 77 77 CD cord-000248-zueoyesj 204 27 ] ] -RRB- cord-000248-zueoyesj 204 28 and and CC cord-000248-zueoyesj 204 29 in in IN cord-000248-zueoyesj 204 30 testis testis NN cord-000248-zueoyesj 204 31 determination determination NN cord-000248-zueoyesj 204 32 [ [ -LRB- cord-000248-zueoyesj 204 33 78 78 CD cord-000248-zueoyesj 204 34 ] ] -RRB- cord-000248-zueoyesj 204 35 , , , cord-000248-zueoyesj 204 36 processes process VBZ cord-000248-zueoyesj 204 37 that that WDT cord-000248-zueoyesj 204 38 link link VBP cord-000248-zueoyesj 204 39 SOX9 sox9 CD cord-000248-zueoyesj 204 40 upregulation upregulation NN cord-000248-zueoyesj 204 41 to to IN cord-000248-zueoyesj 204 42 cancer cancer NN cord-000248-zueoyesj 204 43 development development NN cord-000248-zueoyesj 204 44 [ [ -LRB- cord-000248-zueoyesj 204 45 79 79 CD cord-000248-zueoyesj 204 46 ] ] -RRB- cord-000248-zueoyesj 204 47 . . . cord-000248-zueoyesj 205 1 Basal basal JJ cord-000248-zueoyesj 205 2 epithelial epithelial JJ cord-000248-zueoyesj 205 3 cells cell NNS cord-000248-zueoyesj 205 4 do do VBP cord-000248-zueoyesj 205 5 express express VB cord-000248-zueoyesj 205 6 SOX9 SOX9 NNP cord-000248-zueoyesj 205 7 in in IN cord-000248-zueoyesj 205 8 a a DT cord-000248-zueoyesj 205 9 normal normal JJ cord-000248-zueoyesj 205 10 prostate prostate NN cord-000248-zueoyesj 205 11 . . . cord-000248-zueoyesj 206 1 While while IN cord-000248-zueoyesj 206 2 there there EX cord-000248-zueoyesj 206 3 exists exist VBZ cord-000248-zueoyesj 206 4 no no DT cord-000248-zueoyesj 206 5 detectable detectable JJ cord-000248-zueoyesj 206 6 expression expression NN cord-000248-zueoyesj 206 7 in in IN cord-000248-zueoyesj 206 8 lumina lumina NNP cord-000248-zueoyesj 206 9 epithelial epithelial JJ cord-000248-zueoyesj 206 10 cells cell NNS cord-000248-zueoyesj 206 11 , , , cord-000248-zueoyesj 206 12 SOX9 SOX9 NNP cord-000248-zueoyesj 206 13 has have VBZ cord-000248-zueoyesj 206 14 already already RB cord-000248-zueoyesj 206 15 been be VBN cord-000248-zueoyesj 206 16 reported report VBN cord-000248-zueoyesj 206 17 as as IN cord-000248-zueoyesj 206 18 ' ' '' cord-000248-zueoyesj 206 19 ' ' '' cord-000248-zueoyesj 206 20 expressed express VBN cord-000248-zueoyesj 206 21 in in IN cord-000248-zueoyesj 206 22 primary primary JJ cord-000248-zueoyesj 206 23 prostate prostate NN cord-000248-zueoyesj 206 24 cancer cancer NN cord-000248-zueoyesj 206 25 in in IN cord-000248-zueoyesj 206 26 vivo vivo NN cord-000248-zueoyesj 206 27 , , , cord-000248-zueoyesj 206 28 at at IN cord-000248-zueoyesj 206 29 a a DT cord-000248-zueoyesj 206 30 higher high JJR cord-000248-zueoyesj 206 31 frequency frequency NN cord-000248-zueoyesj 206 32 in in IN cord-000248-zueoyesj 206 33 recurrent recurrent JJ cord-000248-zueoyesj 206 34 prostate prostate NN cord-000248-zueoyesj 206 35 cancer cancer NN cord-000248-zueoyesj 206 36 and and CC cord-000248-zueoyesj 206 37 in in IN cord-000248-zueoyesj 206 38 prostate prostate NN cord-000248-zueoyesj 206 39 cancer cancer NN cord-000248-zueoyesj 206 40 cell cell NN cord-000248-zueoyesj 206 41 lines line NNS cord-000248-zueoyesj 206 42 ( ( -LRB- cord-000248-zueoyesj 206 43 LNCaP lncap NN cord-000248-zueoyesj 206 44 , , , cord-000248-zueoyesj 206 45 CWR22 CWR22 NNP cord-000248-zueoyesj 206 46 , , , cord-000248-zueoyesj 206 47 PC3 PC3 NNP cord-000248-zueoyesj 206 48 , , , cord-000248-zueoyesj 206 49 and and CC cord-000248-zueoyesj 206 50 DU145 du145 FW cord-000248-zueoyesj 206 51 ) ) -RRB- cord-000248-zueoyesj 206 52 ' ' '' cord-000248-zueoyesj 206 53 ' ' '' cord-000248-zueoyesj 206 54 [ [ -LRB- cord-000248-zueoyesj 206 55 80 80 CD cord-000248-zueoyesj 206 56 ] ] -RRB- cord-000248-zueoyesj 206 57 . . . cord-000248-zueoyesj 207 1 Wang Wang NNP cord-000248-zueoyesj 207 2 et et NNP cord-000248-zueoyesj 207 3 al al NNP cord-000248-zueoyesj 207 4 . . . cord-000248-zueoyesj 208 1 , , , cord-000248-zueoyesj 208 2 also also RB cord-000248-zueoyesj 208 3 in in IN cord-000248-zueoyesj 208 4 [ [ -LRB- cord-000248-zueoyesj 208 5 80 80 CD cord-000248-zueoyesj 208 6 ] ] -RRB- cord-000248-zueoyesj 208 7 add add VBP cord-000248-zueoyesj 208 8 that that DT cord-000248-zueoyesj 208 9 : : : cord-000248-zueoyesj 208 10 '' '' '' cord-000248-zueoyesj 209 1 Significantly significantly RB cord-000248-zueoyesj 209 2 , , , cord-000248-zueoyesj 209 3 down down IN cord-000248-zueoyesj 209 4 - - HYPH cord-000248-zueoyesj 209 5 regulation regulation NN cord-000248-zueoyesj 209 6 of of IN cord-000248-zueoyesj 209 7 SOX9 SOX9 NNP cord-000248-zueoyesj 209 8 by by IN cord-000248-zueoyesj 209 9 siRNA siRNA NNP cord-000248-zueoyesj 209 10 in in IN cord-000248-zueoyesj 209 11 prostate prostate NN cord-000248-zueoyesj 209 12 cancer cancer NN cord-000248-zueoyesj 209 13 cells cell NNS cord-000248-zueoyesj 209 14 reduced reduce VBN cord-000248-zueoyesj 209 15 endogenous endogenous JJ cord-000248-zueoyesj 209 16 AR AR NNP cord-000248-zueoyesj 209 17 protein protein NN cord-000248-zueoyesj 209 18 levels level NNS cord-000248-zueoyesj 209 19 , , , cord-000248-zueoyesj 209 20 and and CC cord-000248-zueoyesj 209 21 cell cell NN cord-000248-zueoyesj 209 22 growth growth NN cord-000248-zueoyesj 209 23 indicating indicate VBG cord-000248-zueoyesj 209 24 that that IN cord-000248-zueoyesj 209 25 SOX9 SOX9 NNP cord-000248-zueoyesj 209 26 contributes contribute VBZ cord-000248-zueoyesj 209 27 to to IN cord-000248-zueoyesj 209 28 AR AR NNP cord-000248-zueoyesj 209 29 regulation regulation NN cord-000248-zueoyesj 209 30 and and CC cord-000248-zueoyesj 209 31 decreased decrease VBD cord-000248-zueoyesj 209 32 cellular cellular JJ cord-000248-zueoyesj 209 33 proliferation proliferation NN cord-000248-zueoyesj 209 34 . . . cord-000248-zueoyesj 210 1 These these DT cord-000248-zueoyesj 210 2 results result NNS cord-000248-zueoyesj 210 3 indicate indicate VBP cord-000248-zueoyesj 210 4 that that IN cord-000248-zueoyesj 210 5 SOX9 SOX9 NNP cord-000248-zueoyesj 210 6 in in IN cord-000248-zueoyesj 210 7 prostate prostate NN cord-000248-zueoyesj 210 8 basal basal NN cord-000248-zueoyesj 210 9 cells cell NNS cord-000248-zueoyesj 210 10 supports support VBZ cord-000248-zueoyesj 210 11 the the DT cord-000248-zueoyesj 210 12 development development NN cord-000248-zueoyesj 210 13 and and CC cord-000248-zueoyesj 210 14 maintenance maintenance NN cord-000248-zueoyesj 210 15 of of IN cord-000248-zueoyesj 210 16 the the DT cord-000248-zueoyesj 210 17 luminal luminal JJ cord-000248-zueoyesj 210 18 epithelium epithelium NN cord-000248-zueoyesj 210 19 and and CC cord-000248-zueoyesj 210 20 that that IN cord-000248-zueoyesj 210 21 a a DT cord-000248-zueoyesj 210 22 subset subset NN cord-000248-zueoyesj 210 23 of of IN cord-000248-zueoyesj 210 24 prostate prostate NN cord-000248-zueoyesj 210 25 cancer cancer NN cord-000248-zueoyesj 210 26 cells cell NNS cord-000248-zueoyesj 210 27 may may MD cord-000248-zueoyesj 210 28 escape escape VB cord-000248-zueoyesj 210 29 basal basal NN cord-000248-zueoyesj 210 30 cell cell NN cord-000248-zueoyesj 210 31 requirements requirement NNS cord-000248-zueoyesj 210 32 through through IN cord-000248-zueoyesj 210 33 SOX9 SOX9 NNP cord-000248-zueoyesj 210 34 expression expression NN cord-000248-zueoyesj 210 35 . . . cord-000248-zueoyesj 210 36 ' ' '' cord-000248-zueoyesj 210 37 ' ' '' cord-000248-zueoyesj 211 1 An an DT cord-000248-zueoyesj 211 2 increased increase VBN cord-000248-zueoyesj 211 3 value value NN cord-000248-zueoyesj 211 4 of of IN cord-000248-zueoyesj 211 5 SOX9 SOX9 NNP cord-000248-zueoyesj 211 6 expression expression NN cord-000248-zueoyesj 211 7 in in IN cord-000248-zueoyesj 211 8 advanced advanced JJ cord-000248-zueoyesj 211 9 prostate prostate NN cord-000248-zueoyesj 211 10 cancer cancer NN cord-000248-zueoyesj 211 11 has have VBZ cord-000248-zueoyesj 211 12 been be VBN cord-000248-zueoyesj 211 13 associated associate VBN cord-000248-zueoyesj 211 14 to to IN cord-000248-zueoyesj 211 15 tumor tumor NN cord-000248-zueoyesj 211 16 progression progression NN cord-000248-zueoyesj 211 17 and and CC cord-000248-zueoyesj 211 18 the the DT cord-000248-zueoyesj 211 19 epithelial epithelial NN cord-000248-zueoyesj 211 20 - - HYPH cord-000248-zueoyesj 211 21 mesenchymal mesenchymal JJ cord-000248-zueoyesj 211 22 transition transition NN cord-000248-zueoyesj 211 23 [ [ -LRB- cord-000248-zueoyesj 211 24 81 81 CD cord-000248-zueoyesj 211 25 ] ] -RRB- cord-000248-zueoyesj 211 26 . . . cord-000248-zueoyesj 212 1 SOX9 SOX9 NNP cord-000248-zueoyesj 212 2 expression expression NN cord-000248-zueoyesj 212 3 has have VBZ cord-000248-zueoyesj 212 4 been be VBN cord-000248-zueoyesj 212 5 associated associate VBN cord-000248-zueoyesj 212 6 with with IN cord-000248-zueoyesj 212 7 a a DT cord-000248-zueoyesj 212 8 putative putative JJ cord-000248-zueoyesj 212 9 subgroup subgroup NN cord-000248-zueoyesj 212 10 of of IN cord-000248-zueoyesj 212 11 prostate prostate NN cord-000248-zueoyesj 212 12 cancer cancer NN cord-000248-zueoyesj 212 13 [ [ -LRB- cord-000248-zueoyesj 212 14 82 82 CD cord-000248-zueoyesj 212 15 ] ] -RRB- cord-000248-zueoyesj 212 16 , , , cord-000248-zueoyesj 212 17 associated associate VBN cord-000248-zueoyesj 212 18 to to IN cord-000248-zueoyesj 212 19 lymph lymph NN cord-000248-zueoyesj 212 20 - - HYPH cord-000248-zueoyesj 212 21 node node NN cord-000248-zueoyesj 212 22 metastasis metastasis NN cord-000248-zueoyesj 212 23 ( ( -LRB- cord-000248-zueoyesj 212 24 as as RB cord-000248-zueoyesj 212 25 seems seem VBZ cord-000248-zueoyesj 212 26 to to TO cord-000248-zueoyesj 212 27 be be VB cord-000248-zueoyesj 212 28 the the DT cord-000248-zueoyesj 212 29 case case NN cord-000248-zueoyesj 212 30 in in IN cord-000248-zueoyesj 212 31 this this DT cord-000248-zueoyesj 212 32 dataset dataset NN cord-000248-zueoyesj 212 33 ) ) -RRB- cord-000248-zueoyesj 212 34 and and CC cord-000248-zueoyesj 212 35 has have VBZ cord-000248-zueoyesj 212 36 a a DT cord-000248-zueoyesj 212 37 know know NN cord-000248-zueoyesj 212 38 role role NN cord-000248-zueoyesj 212 39 in in IN cord-000248-zueoyesj 212 40 chondrogenic chondrogenic JJ cord-000248-zueoyesj 212 41 differentiation differentiation NN cord-000248-zueoyesj 212 42 processes process NNS cord-000248-zueoyesj 212 43 [ [ -LRB- cord-000248-zueoyesj 212 44 83 83 CD cord-000248-zueoyesj 212 45 ] ] -RRB- cord-000248-zueoyesj 212 46 . . . cord-000248-zueoyesj 213 1 KLK3 KLK3 NNP cord-000248-zueoyesj 213 2 / / SYM cord-000248-zueoyesj 213 3 PSA PSA NNP cord-000248-zueoyesj 213 4 -(Kallikrein -(kallikrein RB cord-000248-zueoyesj 213 5 - - HYPH cord-000248-zueoyesj 213 6 related relate VBN cord-000248-zueoyesj 213 7 peptidase peptidase NN cord-000248-zueoyesj 213 8 3)/Prostate 3)/prostate CD cord-000248-zueoyesj 213 9 Specific specific JJ cord-000248-zueoyesj 213 10 Antigen Antigen NNP cord-000248-zueoyesj 213 11 . . . cord-000248-zueoyesj 214 1 To to TO cord-000248-zueoyesj 214 2 finalize finalize VB cord-000248-zueoyesj 214 3 our -PRON- PRP$ cord-000248-zueoyesj 214 4 initial initial JJ cord-000248-zueoyesj 214 5 discussion discussion NN cord-000248-zueoyesj 214 6 on on IN cord-000248-zueoyesj 214 7 this this DT cord-000248-zueoyesj 214 8 dataset dataset NN cord-000248-zueoyesj 214 9 , , , cord-000248-zueoyesj 214 10 we -PRON- PRP cord-000248-zueoyesj 214 11 address address VBP cord-000248-zueoyesj 214 12 KLK3 KLK3 NNP cord-000248-zueoyesj 214 13 . . . cord-000248-zueoyesj 215 1 The the DT cord-000248-zueoyesj 215 2 high high JJ cord-000248-zueoyesj 215 3 ranking ranking NN cord-000248-zueoyesj 215 4 of of IN cord-000248-zueoyesj 215 5 KLK3 KLK3 NNP cord-000248-zueoyesj 215 6 / / SYM cord-000248-zueoyesj 215 7 PSA PSA NNP cord-000248-zueoyesj 215 8 in in IN cord-000248-zueoyesj 215 9 our -PRON- PRP$ cord-000248-zueoyesj 215 10 list list NN cord-000248-zueoyesj 215 11 is be VBZ cord-000248-zueoyesj 215 12 perhaps perhaps RB cord-000248-zueoyesj 215 13 one one CD cord-000248-zueoyesj 215 14 of of IN cord-000248-zueoyesj 215 15 the the DT cord-000248-zueoyesj 215 16 most most RBS cord-000248-zueoyesj 215 17 remarkable remarkable JJ cord-000248-zueoyesj 215 18 retrodictive retrodictive JJ cord-000248-zueoyesj 215 19 outcomes outcome NNS cord-000248-zueoyesj 215 20 of of IN cord-000248-zueoyesj 215 21 our -PRON- PRP$ cord-000248-zueoyesj 215 22 approach approach NN cord-000248-zueoyesj 215 23 . . . cord-000248-zueoyesj 216 1 KLK3 KLK3 NNP cord-000248-zueoyesj 216 2 / / SYM cord-000248-zueoyesj 216 3 PSA PSA NNP cord-000248-zueoyesj 216 4 ( ( -LRB- cord-000248-zueoyesj 216 5 also also RB cord-000248-zueoyesj 216 6 known know VBN cord-000248-zueoyesj 216 7 as as IN cord-000248-zueoyesj 216 8 Prostate Prostate NNP cord-000248-zueoyesj 216 9 Specific Specific NNP cord-000248-zueoyesj 216 10 Antigen Antigen NNP cord-000248-zueoyesj 216 11 ) ) -RRB- cord-000248-zueoyesj 216 12 is be VBZ cord-000248-zueoyesj 216 13 a a DT cord-000248-zueoyesj 216 14 conspiquous conspiquous JJ cord-000248-zueoyesj 216 15 member member NN cord-000248-zueoyesj 216 16 of of IN cord-000248-zueoyesj 216 17 our -PRON- PRP$ cord-000248-zueoyesj 216 18 top top JJ cord-000248-zueoyesj 216 19 rank rank NN cord-000248-zueoyesj 216 20 list list NN cord-000248-zueoyesj 216 21 . . . cord-000248-zueoyesj 217 1 It -PRON- PRP cord-000248-zueoyesj 217 2 is be VBZ cord-000248-zueoyesj 217 3 perhaps perhaps RB cord-000248-zueoyesj 217 4 the the DT cord-000248-zueoyesj 217 5 best good JJS cord-000248-zueoyesj 217 6 blood blood NN cord-000248-zueoyesj 217 7 biomarker biomarker NN cord-000248-zueoyesj 217 8 for for IN cord-000248-zueoyesj 217 9 prostate prostate NN cord-000248-zueoyesj 217 10 cancer cancer NN cord-000248-zueoyesj 217 11 screening screening NN cord-000248-zueoyesj 217 12 . . . cord-000248-zueoyesj 218 1 Its -PRON- PRP$ cord-000248-zueoyesj 218 2 relevance relevance NN cord-000248-zueoyesj 218 3 and and CC cord-000248-zueoyesj 218 4 popularity popularity NN cord-000248-zueoyesj 218 5 as as IN cord-000248-zueoyesj 218 6 a a DT cord-000248-zueoyesj 218 7 target target NN cord-000248-zueoyesj 218 8 of of IN cord-000248-zueoyesj 218 9 studies study NNS cord-000248-zueoyesj 218 10 is be VBZ cord-000248-zueoyesj 218 11 so so RB cord-000248-zueoyesj 218 12 wide wide JJ cord-000248-zueoyesj 218 13 that that IN cord-000248-zueoyesj 218 14 it -PRON- PRP cord-000248-zueoyesj 218 15 makes make VBZ cord-000248-zueoyesj 218 16 unfeasible unfeasible JJ cord-000248-zueoyesj 218 17 any any DT cord-000248-zueoyesj 218 18 serious serious JJ cord-000248-zueoyesj 218 19 attempt attempt NN cord-000248-zueoyesj 218 20 to to TO cord-000248-zueoyesj 218 21 uncover uncover VB cord-000248-zueoyesj 218 22 its -PRON- PRP$ cord-000248-zueoyesj 218 23 relevance relevance NN cord-000248-zueoyesj 218 24 in in IN cord-000248-zueoyesj 218 25 the the DT cord-000248-zueoyesj 218 26 prostate prostate NN cord-000248-zueoyesj 218 27 cancer cancer NN cord-000248-zueoyesj 218 28 literature literature NN cord-000248-zueoyesj 218 29 . . . cord-000248-zueoyesj 219 1 A a DT cord-000248-zueoyesj 219 2 search search NN cord-000248-zueoyesj 219 3 using use VBG cord-000248-zueoyesj 219 4 PubMed PubMed NNP cord-000248-zueoyesj 219 5 using use VBG cord-000248-zueoyesj 219 6 the the DT cord-000248-zueoyesj 219 7 keyword keyword NN cord-000248-zueoyesj 219 8 ' ' `` cord-000248-zueoyesj 219 9 KLK3 KLK3 NNP cord-000248-zueoyesj 219 10 ' ' '' cord-000248-zueoyesj 219 11 ( ( -LRB- cord-000248-zueoyesj 219 12 and and CC cord-000248-zueoyesj 219 13 the the DT cord-000248-zueoyesj 219 14 other other JJ cord-000248-zueoyesj 219 15 alias alias NNP cord-000248-zueoyesj 219 16 names name NNS cord-000248-zueoyesj 219 17 of of IN cord-000248-zueoyesj 219 18 this this DT cord-000248-zueoyesj 219 19 gene gene NN cord-000248-zueoyesj 219 20 ) ) -RRB- cord-000248-zueoyesj 219 21 reveals reveal VBZ cord-000248-zueoyesj 219 22 a a DT cord-000248-zueoyesj 219 23 total total NN cord-000248-zueoyesj 219 24 of of IN cord-000248-zueoyesj 219 25 11,429 11,429 CD cord-000248-zueoyesj 219 26 published publish VBN cord-000248-zueoyesj 219 27 papers paper NNS cord-000248-zueoyesj 219 28 . . . cord-000248-zueoyesj 220 1 Of of RB cord-000248-zueoyesj 220 2 course course RB cord-000248-zueoyesj 220 3 , , , cord-000248-zueoyesj 220 4 many many JJ cord-000248-zueoyesj 220 5 of of IN cord-000248-zueoyesj 220 6 these these DT cord-000248-zueoyesj 220 7 publications publication NNS cord-000248-zueoyesj 220 8 relate relate VBP cord-000248-zueoyesj 220 9 to to IN cord-000248-zueoyesj 220 10 its -PRON- PRP$ cord-000248-zueoyesj 220 11 role role NN cord-000248-zueoyesj 220 12 for for IN cord-000248-zueoyesj 220 13 early early JJ cord-000248-zueoyesj 220 14 screening screening NN cord-000248-zueoyesj 220 15 , , , cord-000248-zueoyesj 220 16 but but CC cord-000248-zueoyesj 220 17 in in IN cord-000248-zueoyesj 220 18 this this DT cord-000248-zueoyesj 220 19 study study NN cord-000248-zueoyesj 220 20 we -PRON- PRP cord-000248-zueoyesj 220 21 are be VBP cord-000248-zueoyesj 220 22 uncovering uncover VBG cord-000248-zueoyesj 220 23 its -PRON- PRP$ cord-000248-zueoyesj 220 24 role role NN cord-000248-zueoyesj 220 25 as as IN cord-000248-zueoyesj 220 26 a a DT cord-000248-zueoyesj 220 27 tissue tissue NN cord-000248-zueoyesj 220 28 biomarker biomarker NN cord-000248-zueoyesj 220 29 . . . cord-000248-zueoyesj 221 1 Our -PRON- PRP$ cord-000248-zueoyesj 221 2 results result NNS cord-000248-zueoyesj 221 3 echoes echo VBZ cord-000248-zueoyesj 221 4 a a DT cord-000248-zueoyesj 221 5 recent recent JJ cord-000248-zueoyesj 221 6 contribution contribution NN cord-000248-zueoyesj 221 7 by by IN cord-000248-zueoyesj 221 8 S. S. NNP cord-000248-zueoyesj 221 9 Miyano Miyano NNP cord-000248-zueoyesj 221 10 's 's POS cord-000248-zueoyesj 221 11 and and CC cord-000248-zueoyesj 221 12 his -PRON- PRP$ cord-000248-zueoyesj 221 13 collaborators collaborator NNS cord-000248-zueoyesj 221 14 [ [ -LRB- cord-000248-zueoyesj 221 15 84 84 CD cord-000248-zueoyesj 221 16 ] ] -RRB- cord-000248-zueoyesj 221 17 on on IN cord-000248-zueoyesj 221 18 a a DT cord-000248-zueoyesj 221 19 massive massive JJ cord-000248-zueoyesj 221 20 meta meta NN cord-000248-zueoyesj 221 21 - - HYPH cord-000248-zueoyesj 221 22 analysis analysis NN cord-000248-zueoyesj 221 23 of of IN cord-000248-zueoyesj 221 24 microarray microarray NN cord-000248-zueoyesj 221 25 datasets dataset NNS cord-000248-zueoyesj 221 26 . . . cord-000248-zueoyesj 222 1 It -PRON- PRP cord-000248-zueoyesj 222 2 is be VBZ cord-000248-zueoyesj 222 3 also also RB cord-000248-zueoyesj 222 4 in in IN cord-000248-zueoyesj 222 5 line line NN cord-000248-zueoyesj 222 6 with with IN cord-000248-zueoyesj 222 7 results result NNS cord-000248-zueoyesj 222 8 from from IN cord-000248-zueoyesj 222 9 clinical clinical JJ cord-000248-zueoyesj 222 10 studies study NNS cord-000248-zueoyesj 222 11 that that WDT cord-000248-zueoyesj 222 12 indicate indicate VBP cord-000248-zueoyesj 222 13 that that IN cord-000248-zueoyesj 222 14 a a DT cord-000248-zueoyesj 222 15 5-year 5-year CD cord-000248-zueoyesj 222 16 PSA PSA NNP cord-000248-zueoyesj 222 17 value value NN cord-000248-zueoyesj 222 18 is be VBZ cord-000248-zueoyesj 222 19 useful useful JJ cord-000248-zueoyesj 222 20 for for IN cord-000248-zueoyesj 222 21 predicting predict VBG cord-000248-zueoyesj 222 22 prostate prostate NN cord-000248-zueoyesj 222 23 cancer cancer NN cord-000248-zueoyesj 222 24 recurrence recurrence NN cord-000248-zueoyesj 222 25 . . . cord-000248-zueoyesj 223 1 [ [ -LRB- cord-000248-zueoyesj 223 2 85 85 CD cord-000248-zueoyesj 223 3 ] ] -RRB- cord-000248-zueoyesj 223 4 . . . cord-000248-zueoyesj 224 1 Certainly certainly RB cord-000248-zueoyesj 224 2 the the DT cord-000248-zueoyesj 224 3 dynamics dynamic NNS cord-000248-zueoyesj 224 4 of of IN cord-000248-zueoyesj 224 5 PSA PSA NNP cord-000248-zueoyesj 224 6 , , , cord-000248-zueoyesj 224 7 now now RB cord-000248-zueoyesj 224 8 perhaps perhaps RB cord-000248-zueoyesj 224 9 with with IN cord-000248-zueoyesj 224 10 FOS FOS NNP cord-000248-zueoyesj 224 11 and and CC cord-000248-zueoyesj 224 12 SOX9 SOX9 NNP cord-000248-zueoyesj 224 13 added add VBD cord-000248-zueoyesj 224 14 to to IN cord-000248-zueoyesj 224 15 the the DT cord-000248-zueoyesj 224 16 set set NN cord-000248-zueoyesj 224 17 of of IN cord-000248-zueoyesj 224 18 biomarkers biomarker NNS cord-000248-zueoyesj 224 19 of of IN cord-000248-zueoyesj 224 20 interest interest NN cord-000248-zueoyesj 224 21 , , , cord-000248-zueoyesj 224 22 warrant warrant VBP cord-000248-zueoyesj 224 23 further further JJ cord-000248-zueoyesj 224 24 investigation investigation NN cord-000248-zueoyesj 224 25 for for IN cord-000248-zueoyesj 224 26 patient patient JJ cord-000248-zueoyesj 224 27 population population NN cord-000248-zueoyesj 224 28 stratification stratification NN cord-000248-zueoyesj 224 29 after after IN cord-000248-zueoyesj 224 30 initial initial JJ cord-000248-zueoyesj 224 31 treatment treatment NN cord-000248-zueoyesj 224 32 . . . cord-000248-zueoyesj 225 1 The the DT cord-000248-zueoyesj 225 2 biomarkers biomarker NNS cord-000248-zueoyesj 225 3 discussed discuss VBN cord-000248-zueoyesj 225 4 in in IN cord-000248-zueoyesj 225 5 this this DT cord-000248-zueoyesj 225 6 section section NN cord-000248-zueoyesj 225 7 warrant warrant VBP cord-000248-zueoyesj 225 8 further further JJ cord-000248-zueoyesj 225 9 investigation investigation NN cord-000248-zueoyesj 225 10 in in IN cord-000248-zueoyesj 225 11 prediction prediction NN cord-000248-zueoyesj 225 12 of of IN cord-000248-zueoyesj 225 13 lymph lymph NN cord-000248-zueoyesj 225 14 - - HYPH cord-000248-zueoyesj 225 15 node node NN cord-000248-zueoyesj 225 16 metastasis metastasis NN cord-000248-zueoyesj 225 17 and and CC cord-000248-zueoyesj 225 18 clinical clinical JJ cord-000248-zueoyesj 225 19 management management NN cord-000248-zueoyesj 225 20 of of IN cord-000248-zueoyesj 225 21 prostate prostate NN cord-000248-zueoyesj 225 22 cancer cancer NN cord-000248-zueoyesj 225 23 [ [ -LRB- cord-000248-zueoyesj 225 24 86 86 CD cord-000248-zueoyesj 225 25 , , , cord-000248-zueoyesj 225 26 87 87 CD cord-000248-zueoyesj 225 27 , , , cord-000248-zueoyesj 225 28 88 88 CD cord-000248-zueoyesj 225 29 , , , cord-000248-zueoyesj 225 30 89 89 CD cord-000248-zueoyesj 225 31 , , , cord-000248-zueoyesj 225 32 90 90 CD cord-000248-zueoyesj 225 33 , , , cord-000248-zueoyesj 225 34 91 91 CD cord-000248-zueoyesj 225 35 , , , cord-000248-zueoyesj 225 36 92 92 CD cord-000248-zueoyesj 225 37 , , , cord-000248-zueoyesj 225 38 93 93 CD cord-000248-zueoyesj 225 39 , , , cord-000248-zueoyesj 225 40 94 94 CD cord-000248-zueoyesj 225 41 , , , cord-000248-zueoyesj 225 42 95 95 CD cord-000248-zueoyesj 225 43 , , , cord-000248-zueoyesj 225 44 96 96 CD cord-000248-zueoyesj 225 45 , , , cord-000248-zueoyesj 225 46 97 97 CD cord-000248-zueoyesj 225 47 , , , cord-000248-zueoyesj 225 48 98 98 CD cord-000248-zueoyesj 225 49 , , , cord-000248-zueoyesj 225 50 99 99 CD cord-000248-zueoyesj 225 51 , , , cord-000248-zueoyesj 225 52 100 100 CD cord-000248-zueoyesj 225 53 , , , cord-000248-zueoyesj 225 54 101 101 CD cord-000248-zueoyesj 225 55 , , , cord-000248-zueoyesj 225 56 102 102 CD cord-000248-zueoyesj 225 57 , , , cord-000248-zueoyesj 225 58 103 103 CD cord-000248-zueoyesj 225 59 , , , cord-000248-zueoyesj 225 60 104 104 CD cord-000248-zueoyesj 225 61 , , , cord-000248-zueoyesj 225 62 105 105 CD cord-000248-zueoyesj 225 63 , , , cord-000248-zueoyesj 225 64 106 106 CD cord-000248-zueoyesj 225 65 , , , cord-000248-zueoyesj 225 66 107 107 CD cord-000248-zueoyesj 225 67 , , , cord-000248-zueoyesj 225 68 108 108 CD cord-000248-zueoyesj 225 69 , , , cord-000248-zueoyesj 225 70 109 109 CD cord-000248-zueoyesj 225 71 ] ] -RRB- cord-000248-zueoyesj 225 72 . . . cord-000248-zueoyesj 226 1 We -PRON- PRP cord-000248-zueoyesj 226 2 refer refer VBP cord-000248-zueoyesj 226 3 the the DT cord-000248-zueoyesj 226 4 reader reader NN cord-000248-zueoyesj 226 5 to to IN cord-000248-zueoyesj 226 6 the the DT cord-000248-zueoyesj 226 7 Supplementary Supplementary NNP cord-000248-zueoyesj 226 8 Material Material NNP cord-000248-zueoyesj 226 9 to to TO cord-000248-zueoyesj 226 10 have have VB cord-000248-zueoyesj 226 11 a a DT cord-000248-zueoyesj 226 12 complete complete JJ cord-000248-zueoyesj 226 13 list list NN cord-000248-zueoyesj 226 14 of of IN cord-000248-zueoyesj 226 15 probes probe NNS cord-000248-zueoyesj 226 16 and and CC cord-000248-zueoyesj 226 17 their -PRON- PRP$ cord-000248-zueoyesj 226 18 correlations correlation NNS cord-000248-zueoyesj 226 19 with with IN cord-000248-zueoyesj 226 20 the the DT cord-000248-zueoyesj 226 21 Information Information NNP cord-000248-zueoyesj 226 22 Theory Theory NNP cord-000248-zueoyesj 226 23 quantifiers quantifier NNS cord-000248-zueoyesj 226 24 . . . cord-000248-zueoyesj 227 1 The the DT cord-000248-zueoyesj 227 2 following following JJ cord-000248-zueoyesj 227 3 sections section NNS cord-000248-zueoyesj 227 4 present present VBP cord-000248-zueoyesj 227 5 the the DT cord-000248-zueoyesj 227 6 results result NNS cord-000248-zueoyesj 227 7 that that WDT cord-000248-zueoyesj 227 8 we -PRON- PRP cord-000248-zueoyesj 227 9 obtained obtain VBD cord-000248-zueoyesj 227 10 with with IN cord-000248-zueoyesj 227 11 a a DT cord-000248-zueoyesj 227 12 melanoma melanoma NN cord-000248-zueoyesj 227 13 dataset dataset NN cord-000248-zueoyesj 227 14 . . . cord-000248-zueoyesj 228 1 Our -PRON- PRP$ cord-000248-zueoyesj 228 2 aim aim NN cord-000248-zueoyesj 228 3 is be VBZ cord-000248-zueoyesj 228 4 to to TO cord-000248-zueoyesj 228 5 observe observe VB cord-000248-zueoyesj 228 6 if if IN cord-000248-zueoyesj 228 7 variations variation NNS cord-000248-zueoyesj 228 8 of of IN cord-000248-zueoyesj 228 9 the the DT cord-000248-zueoyesj 228 10 Normalized Normalized NNP cord-000248-zueoyesj 228 11 Shannon Shannon NNP cord-000248-zueoyesj 228 12 Entropy Entropy NNP cord-000248-zueoyesj 228 13 and and CC cord-000248-zueoyesj 228 14 the the DT cord-000248-zueoyesj 228 15 statistical statistical JJ cord-000248-zueoyesj 228 16 complexity complexity NN cord-000248-zueoyesj 228 17 measures measure NNS cord-000248-zueoyesj 228 18 , , , cord-000248-zueoyesj 228 19 MPR mpr NN cord-000248-zueoyesj 228 20 - - HYPH cord-000248-zueoyesj 228 21 complexity complexity NN cord-000248-zueoyesj 228 22 and and CC cord-000248-zueoyesj 228 23 the the DT cord-000248-zueoyesj 228 24 modified modify VBN cord-000248-zueoyesj 228 25 forms form NNS cord-000248-zueoyesj 228 26 M M NNP cord-000248-zueoyesj 228 27 - - HYPH cord-000248-zueoyesj 228 28 normal normal JJ cord-000248-zueoyesj 228 29 and and CC cord-000248-zueoyesj 228 30 M m NN cord-000248-zueoyesj 228 31 - - HYPH cord-000248-zueoyesj 228 32 metastases metastasis NNS cord-000248-zueoyesj 228 33 , , , cord-000248-zueoyesj 228 34 provide provide VB cord-000248-zueoyesj 228 35 interesting interesting JJ cord-000248-zueoyesj 228 36 results result NNS cord-000248-zueoyesj 228 37 in in IN cord-000248-zueoyesj 228 38 a a DT cord-000248-zueoyesj 228 39 different different JJ cord-000248-zueoyesj 228 40 disease disease NN cord-000248-zueoyesj 228 41 and and CC cord-000248-zueoyesj 228 42 experimental experimental JJ cord-000248-zueoyesj 228 43 setting setting NN cord-000248-zueoyesj 228 44 . . . cord-000248-zueoyesj 229 1 In in IN cord-000248-zueoyesj 229 2 this this DT cord-000248-zueoyesj 229 3 case case NN cord-000248-zueoyesj 229 4 we -PRON- PRP cord-000248-zueoyesj 229 5 have have VBP cord-000248-zueoyesj 229 6 selected select VBN cord-000248-zueoyesj 229 7 a a DT cord-000248-zueoyesj 229 8 gene gene NN cord-000248-zueoyesj 229 9 expression expression NN cord-000248-zueoyesj 229 10 dataset dataset NN cord-000248-zueoyesj 229 11 from from IN cord-000248-zueoyesj 229 12 Haqq Haqq NNP cord-000248-zueoyesj 229 13 et et FW cord-000248-zueoyesj 229 14 al al NNP cord-000248-zueoyesj 229 15 . . . cord-000248-zueoyesj 230 1 [ [ -LRB- cord-000248-zueoyesj 230 2 110 110 CD cord-000248-zueoyesj 230 3 ] ] -RRB- cord-000248-zueoyesj 230 4 containing contain VBG cord-000248-zueoyesj 230 5 information information NN cord-000248-zueoyesj 230 6 of of IN cord-000248-zueoyesj 230 7 14,772 14,772 CD cord-000248-zueoyesj 230 8 cDNAs cdna NNS cord-000248-zueoyesj 230 9 in in IN cord-000248-zueoyesj 230 10 37 37 CD cord-000248-zueoyesj 230 11 samples sample NNS cord-000248-zueoyesj 230 12 ( ( -LRB- cord-000248-zueoyesj 230 13 Figure figure VB cord-000248-zueoyesj 230 14 two two CD cord-000248-zueoyesj 230 15 from from IN cord-000248-zueoyesj 230 16 the the DT cord-000248-zueoyesj 230 17 [ [ -LRB- cord-000248-zueoyesj 230 18 110 110 CD cord-000248-zueoyesj 230 19 ] ] -RRB- cord-000248-zueoyesj 230 20 ) ) -RRB- cord-000248-zueoyesj 230 21 . . . cord-000248-zueoyesj 231 1 The the DT cord-000248-zueoyesj 231 2 37 37 CD cord-000248-zueoyesj 231 3 samples sample NNS cord-000248-zueoyesj 231 4 include include VBP cord-000248-zueoyesj 231 5 3 3 CD cord-000248-zueoyesj 231 6 normal normal JJ cord-000248-zueoyesj 231 7 skin skin NN cord-000248-zueoyesj 231 8 , , , cord-000248-zueoyesj 231 9 9 9 CD cord-000248-zueoyesj 231 10 nevi nevus NNS cord-000248-zueoyesj 231 11 , , , cord-000248-zueoyesj 231 12 6 6 CD cord-000248-zueoyesj 231 13 primary primary JJ cord-000248-zueoyesj 231 14 melanoma melanoma NN cord-000248-zueoyesj 231 15 and and CC cord-000248-zueoyesj 231 16 19 19 CD cord-000248-zueoyesj 231 17 melanoma melanoma NN cord-000248-zueoyesj 231 18 metastases metastasis NNS cord-000248-zueoyesj 231 19 . . . cord-000248-zueoyesj 232 1 This this DT cord-000248-zueoyesj 232 2 datasets dataset NNS cord-000248-zueoyesj 232 3 has have VBZ cord-000248-zueoyesj 232 4 more more JJR cord-000248-zueoyesj 232 5 phenotypical phenotypical JJ cord-000248-zueoyesj 232 6 characteristics characteristic NNS cord-000248-zueoyesj 232 7 for for IN cord-000248-zueoyesj 232 8 the the DT cord-000248-zueoyesj 232 9 group group NN cord-000248-zueoyesj 232 10 of of IN cord-000248-zueoyesj 232 11 samples sample NNS cord-000248-zueoyesj 232 12 . . . cord-000248-zueoyesj 233 1 After after IN cord-000248-zueoyesj 233 2 an an DT cord-000248-zueoyesj 233 3 initial initial JJ cord-000248-zueoyesj 233 4 process process NN cord-000248-zueoyesj 233 5 of of IN cord-000248-zueoyesj 233 6 data datum NNS cord-000248-zueoyesj 233 7 cleaning cleaning NN cord-000248-zueoyesj 233 8 , , , cord-000248-zueoyesj 233 9 we -PRON- PRP cord-000248-zueoyesj 233 10 removed remove VBD cord-000248-zueoyesj 233 11 35 35 CD cord-000248-zueoyesj 233 12 probes probe NNS cord-000248-zueoyesj 233 13 which which WDT cord-000248-zueoyesj 233 14 had have VBD cord-000248-zueoyesj 233 15 an an DT cord-000248-zueoyesj 233 16 unsually unsually RB cord-000248-zueoyesj 233 17 high high JJ cord-000248-zueoyesj 233 18 expression expression NN cord-000248-zueoyesj 233 19 value value NN cord-000248-zueoyesj 233 20 on on IN cord-000248-zueoyesj 233 21 only only RB cord-000248-zueoyesj 233 22 a a DT cord-000248-zueoyesj 233 23 few few JJ cord-000248-zueoyesj 233 24 samples sample NNS cord-000248-zueoyesj 233 25 , , , cord-000248-zueoyesj 233 26 in in IN cord-000248-zueoyesj 233 27 some some DT cord-000248-zueoyesj 233 28 cases case NNS cord-000248-zueoyesj 233 29 on on IN cord-000248-zueoyesj 233 30 a a DT cord-000248-zueoyesj 233 31 single single JJ cord-000248-zueoyesj 233 32 one one CD cord-000248-zueoyesj 233 33 . . . cord-000248-zueoyesj 234 1 The the DT cord-000248-zueoyesj 234 2 dataset dataset NN cord-000248-zueoyesj 234 3 we -PRON- PRP cord-000248-zueoyesj 234 4 work work VBP cord-000248-zueoyesj 234 5 with with IN cord-000248-zueoyesj 234 6 from from IN cord-000248-zueoyesj 234 7 original original JJ cord-000248-zueoyesj 234 8 contributed contribute VBN cord-000248-zueoyesj 234 9 by by IN cord-000248-zueoyesj 234 10 Haqq Haqq NNP cord-000248-zueoyesj 234 11 et et FW cord-000248-zueoyesj 234 12 al.consists al.consists NNP cord-000248-zueoyesj 234 13 of of IN cord-000248-zueoyesj 234 14 14,737 14,737 CD cord-000248-zueoyesj 234 15 probes probe NNS cord-000248-zueoyesj 234 16 . . . cord-000248-zueoyesj 235 1 First first RB cord-000248-zueoyesj 235 2 , , , cord-000248-zueoyesj 235 3 we -PRON- PRP cord-000248-zueoyesj 235 4 computed compute VBD cord-000248-zueoyesj 235 5 the the DT cord-000248-zueoyesj 235 6 Normalized Normalized NNP cord-000248-zueoyesj 235 7 Shannon Shannon NNP cord-000248-zueoyesj 235 8 Entropy Entropy NNP cord-000248-zueoyesj 235 9 and and CC cord-000248-zueoyesj 235 10 the the DT cord-000248-zueoyesj 235 11 MPR MPR NNP cord-000248-zueoyesj 235 12 - - HYPH cord-000248-zueoyesj 235 13 Statistical Statistical NNP cord-000248-zueoyesj 235 14 Complexity Complexity NNP cord-000248-zueoyesj 235 15 for for IN cord-000248-zueoyesj 235 16 each each DT cord-000248-zueoyesj 235 17 sample sample NN cord-000248-zueoyesj 235 18 ( ( -LRB- cord-000248-zueoyesj 235 19 refer refer VB cord-000248-zueoyesj 235 20 to to IN cord-000248-zueoyesj 235 21 the the DT cord-000248-zueoyesj 235 22 ' ' `` cord-000248-zueoyesj 235 23 Materials material NNS cord-000248-zueoyesj 235 24 and and CC cord-000248-zueoyesj 235 25 Methods Methods NNPS cord-000248-zueoyesj 235 26 ' ' POS cord-000248-zueoyesj 235 27 section section NN cord-000248-zueoyesj 235 28 for for IN cord-000248-zueoyesj 235 29 a a DT cord-000248-zueoyesj 235 30 detailed detailed JJ cord-000248-zueoyesj 235 31 presentation presentation NN cord-000248-zueoyesj 235 32 of of IN cord-000248-zueoyesj 235 33 these these DT cord-000248-zueoyesj 235 34 calculations calculation NNS cord-000248-zueoyesj 235 35 ) ) -RRB- cord-000248-zueoyesj 235 36 . . . cord-000248-zueoyesj 236 1 Figure figure NN cord-000248-zueoyesj 236 2 4 4 CD cord-000248-zueoyesj 236 3 shows show VBZ cord-000248-zueoyesj 236 4 the the DT cord-000248-zueoyesj 236 5 values value NNS cord-000248-zueoyesj 236 6 of of IN cord-000248-zueoyesj 236 7 these these DT cord-000248-zueoyesj 236 8 quantifiers quantifier NNS cord-000248-zueoyesj 236 9 for for IN cord-000248-zueoyesj 236 10 each each DT cord-000248-zueoyesj 236 11 sample sample NN cord-000248-zueoyesj 236 12 . . . cord-000248-zueoyesj 237 1 We -PRON- PRP cord-000248-zueoyesj 237 2 first first RB cord-000248-zueoyesj 237 3 observe observe VBP cord-000248-zueoyesj 237 4 an an DT cord-000248-zueoyesj 237 5 important important JJ cord-000248-zueoyesj 237 6 difference difference NN cord-000248-zueoyesj 237 7 between between IN cord-000248-zueoyesj 237 8 Figure figure NN cord-000248-zueoyesj 237 9 1 1 CD cord-000248-zueoyesj 237 10 and and CC cord-000248-zueoyesj 237 11 Figure Figure NNP cord-000248-zueoyesj 237 12 4 4 CD cord-000248-zueoyesj 237 13 . . . cord-000248-zueoyesj 238 1 In in IN cord-000248-zueoyesj 238 2 this this DT cord-000248-zueoyesj 238 3 melanoma melanoma NN cord-000248-zueoyesj 238 4 dataset dataset NN cord-000248-zueoyesj 238 5 , , , cord-000248-zueoyesj 238 6 neither neither CC cord-000248-zueoyesj 238 7 the the DT cord-000248-zueoyesj 238 8 use use NN cord-000248-zueoyesj 238 9 of of IN cord-000248-zueoyesj 238 10 the the DT cord-000248-zueoyesj 238 11 Normalized Normalized NNP cord-000248-zueoyesj 238 12 Shannon Shannon NNP cord-000248-zueoyesj 238 13 Entropy Entropy NNP cord-000248-zueoyesj 238 14 nor nor CC cord-000248-zueoyesj 238 15 the the DT cord-000248-zueoyesj 238 16 MPR MPR NNP cord-000248-zueoyesj 238 17 - - HYPH cord-000248-zueoyesj 238 18 complexity complexity NN cord-000248-zueoyesj 238 19 helps help VBZ cord-000248-zueoyesj 238 20 to to TO cord-000248-zueoyesj 238 21 discriminate discriminate VB cord-000248-zueoyesj 238 22 between between IN cord-000248-zueoyesj 238 23 normal normal JJ cord-000248-zueoyesj 238 24 skin skin NN cord-000248-zueoyesj 238 25 , , , cord-000248-zueoyesj 238 26 nevi nevus NNS cord-000248-zueoyesj 238 27 , , , cord-000248-zueoyesj 238 28 primary primary JJ cord-000248-zueoyesj 238 29 and and CC cord-000248-zueoyesj 238 30 metastastic metastastic JJ cord-000248-zueoyesj 238 31 melanomas melanoma NNS cord-000248-zueoyesj 238 32 . . . cord-000248-zueoyesj 239 1 Nevertheless nevertheless RB cord-000248-zueoyesj 239 2 , , , cord-000248-zueoyesj 239 3 we -PRON- PRP cord-000248-zueoyesj 239 4 decided decide VBD cord-000248-zueoyesj 239 5 to to TO cord-000248-zueoyesj 239 6 present present VB cord-000248-zueoyesj 239 7 this this DT cord-000248-zueoyesj 239 8 figure figure NN cord-000248-zueoyesj 239 9 for for IN cord-000248-zueoyesj 239 10 methodological methodological JJ cord-000248-zueoyesj 239 11 reasons reason NNS cord-000248-zueoyesj 239 12 . . . cord-000248-zueoyesj 240 1 We -PRON- PRP cord-000248-zueoyesj 240 2 envision envision VBP cord-000248-zueoyesj 240 3 that that IN cord-000248-zueoyesj 240 4 some some DT cord-000248-zueoyesj 240 5 researchers researcher NNS cord-000248-zueoyesj 240 6 will will MD cord-000248-zueoyesj 240 7 calculate calculate VB cord-000248-zueoyesj 240 8 the the DT cord-000248-zueoyesj 240 9 Normalized Normalized NNP cord-000248-zueoyesj 240 10 Shannon Shannon NNP cord-000248-zueoyesj 240 11 Entropy Entropy NNP cord-000248-zueoyesj 240 12 and and CC cord-000248-zueoyesj 240 13 MPR MPR NNP cord-000248-zueoyesj 240 14 - - HYPH cord-000248-zueoyesj 240 15 complexity complexity NN cord-000248-zueoyesj 240 16 using use VBG cord-000248-zueoyesj 240 17 all all PDT cord-000248-zueoyesj 240 18 the the DT cord-000248-zueoyesj 240 19 probes probe NNS cord-000248-zueoyesj 240 20 . . . cord-000248-zueoyesj 241 1 We -PRON- PRP cord-000248-zueoyesj 241 2 note note VBP cord-000248-zueoyesj 241 3 that that IN cord-000248-zueoyesj 241 4 in in IN cord-000248-zueoyesj 241 5 Figure figure NN cord-000248-zueoyesj 241 6 one one CD cord-000248-zueoyesj 241 7 of of IN cord-000248-zueoyesj 241 8 Haqq Haqq NNP cord-000248-zueoyesj 241 9 et et NNP cord-000248-zueoyesj 241 10 al al NNP cord-000248-zueoyesj 241 11 's 's POS cord-000248-zueoyesj 241 12 original original JJ cord-000248-zueoyesj 241 13 paper paper NN cord-000248-zueoyesj 241 14 , , , cord-000248-zueoyesj 241 15 the the DT cord-000248-zueoyesj 241 16 whole whole JJ cord-000248-zueoyesj 241 17 probe probe NN cord-000248-zueoyesj 241 18 set set NN cord-000248-zueoyesj 241 19 was be VBD cord-000248-zueoyesj 241 20 previously previously RB cord-000248-zueoyesj 241 21 filtered filter VBN cord-000248-zueoyesj 241 22 by by IN cord-000248-zueoyesj 241 23 selecting select VBG cord-000248-zueoyesj 241 24 those those DT cord-000248-zueoyesj 241 25 which which WDT cord-000248-zueoyesj 241 26 vary vary VBP cord-000248-zueoyesj 241 27 across across IN cord-000248-zueoyesj 241 28 samples sample NNS cord-000248-zueoyesj 241 29 , , , cord-000248-zueoyesj 241 30 thus thus RB cord-000248-zueoyesj 241 31 indicating indicate VBG cord-000248-zueoyesj 241 32 that that IN cord-000248-zueoyesj 241 33 they -PRON- PRP cord-000248-zueoyesj 241 34 may may MD cord-000248-zueoyesj 241 35 have have VB cord-000248-zueoyesj 241 36 information information NN cord-000248-zueoyesj 241 37 about about IN cord-000248-zueoyesj 241 38 disease disease NN cord-000248-zueoyesj 241 39 subtypes subtype NNS cord-000248-zueoyesj 241 40 ( ( -LRB- cord-000248-zueoyesj 241 41 although although IN cord-000248-zueoyesj 241 42 the the DT cord-000248-zueoyesj 241 43 phenotypic phenotypic JJ cord-000248-zueoyesj 241 44 types type NNS cord-000248-zueoyesj 241 45 were be VBD cord-000248-zueoyesj 241 46 not not RB cord-000248-zueoyesj 241 47 biasing bias VBG cord-000248-zueoyesj 241 48 the the DT cord-000248-zueoyesj 241 49 selection selection NN cord-000248-zueoyesj 241 50 ) ) -RRB- cord-000248-zueoyesj 241 51 . . . cord-000248-zueoyesj 242 1 In in IN cord-000248-zueoyesj 242 2 this this DT cord-000248-zueoyesj 242 3 case case NN cord-000248-zueoyesj 242 4 we -PRON- PRP cord-000248-zueoyesj 242 5 want want VBP cord-000248-zueoyesj 242 6 to to TO cord-000248-zueoyesj 242 7 illustrate illustrate VB cord-000248-zueoyesj 242 8 both both CC cord-000248-zueoyesj 242 9 the the DT cord-000248-zueoyesj 242 10 Normalized Normalized NNP cord-000248-zueoyesj 242 11 Shannon Shannon NNP cord-000248-zueoyesj 242 12 Entropy Entropy NNP cord-000248-zueoyesj 242 13 and and CC cord-000248-zueoyesj 242 14 MPR MPR NNP cord-000248-zueoyesj 242 15 - - HYPH cord-000248-zueoyesj 242 16 complexity complexity NN cord-000248-zueoyesj 242 17 calculated calculate VBN cord-000248-zueoyesj 242 18 using use VBG cord-000248-zueoyesj 242 19 all all PDT cord-000248-zueoyesj 242 20 the the DT cord-000248-zueoyesj 242 21 probes probe NNS cord-000248-zueoyesj 242 22 does do VBZ cord-000248-zueoyesj 242 23 not not RB cord-000248-zueoyesj 242 24 give give VB cord-000248-zueoyesj 242 25 the the DT cord-000248-zueoyesj 242 26 expected expect VBN cord-000248-zueoyesj 242 27 benefits benefit NNS cord-000248-zueoyesj 242 28 . . . cord-000248-zueoyesj 243 1 We -PRON- PRP cord-000248-zueoyesj 243 2 will will MD cord-000248-zueoyesj 243 3 now now RB cord-000248-zueoyesj 243 4 see see VB cord-000248-zueoyesj 243 5 the the DT cord-000248-zueoyesj 243 6 benefits benefit NNS cord-000248-zueoyesj 243 7 of of IN cord-000248-zueoyesj 243 8 using use VBG cord-000248-zueoyesj 243 9 the the DT cord-000248-zueoyesj 243 10 M M NNP cord-000248-zueoyesj 243 11 - - HYPH cord-000248-zueoyesj 243 12 complexities complexity NNS cord-000248-zueoyesj 243 13 . . . cord-000248-zueoyesj 244 1 As as IN cord-000248-zueoyesj 244 2 we -PRON- PRP cord-000248-zueoyesj 244 3 did do VBD cord-000248-zueoyesj 244 4 for for IN cord-000248-zueoyesj 244 5 prostate prostate NN cord-000248-zueoyesj 244 6 cancer cancer NN cord-000248-zueoyesj 244 7 ( ( -LRB- cord-000248-zueoyesj 244 8 see see VB cord-000248-zueoyesj 244 9 Figure Figure NNP cord-000248-zueoyesj 244 10 2 2 CD cord-000248-zueoyesj 244 11 ) ) -RRB- cord-000248-zueoyesj 244 12 , , , cord-000248-zueoyesj 244 13 we -PRON- PRP cord-000248-zueoyesj 244 14 aim aim VBP cord-000248-zueoyesj 244 15 at at IN cord-000248-zueoyesj 244 16 identifying identify VBG cord-000248-zueoyesj 244 17 if if IN cord-000248-zueoyesj 244 18 the the DT cord-000248-zueoyesj 244 19 use use NN cord-000248-zueoyesj 244 20 of of IN cord-000248-zueoyesj 244 21 the the DT cord-000248-zueoyesj 244 22 modified modify VBN cord-000248-zueoyesj 244 23 forms form NNS cord-000248-zueoyesj 244 24 of of IN cord-000248-zueoyesj 244 25 the the DT cord-000248-zueoyesj 244 26 statistical statistical JJ cord-000248-zueoyesj 244 27 complexity complexity NN cord-000248-zueoyesj 244 28 ( ( -LRB- cord-000248-zueoyesj 244 29 the the DT cord-000248-zueoyesj 244 30 M M NNP cord-000248-zueoyesj 244 31 - - HYPH cord-000248-zueoyesj 244 32 complexities complexity NNS cord-000248-zueoyesj 244 33 ) ) -RRB- cord-000248-zueoyesj 244 34 could could MD cord-000248-zueoyesj 244 35 give give VB cord-000248-zueoyesj 244 36 some some DT cord-000248-zueoyesj 244 37 insight insight NN cord-000248-zueoyesj 244 38 where where WRB cord-000248-zueoyesj 244 39 the the DT cord-000248-zueoyesj 244 40 Normalized Normalized NNP cord-000248-zueoyesj 244 41 Shannon Shannon NNP cord-000248-zueoyesj 244 42 Entropy Entropy NNP cord-000248-zueoyesj 244 43 and and CC cord-000248-zueoyesj 244 44 MPR MPR NNP cord-000248-zueoyesj 244 45 - - HYPH cord-000248-zueoyesj 244 46 complexity complexity NN cord-000248-zueoyesj 244 47 measures measure NNS cord-000248-zueoyesj 244 48 fail fail VBP cord-000248-zueoyesj 244 49 . . . cord-000248-zueoyesj 245 1 To to TO cord-000248-zueoyesj 245 2 compute compute VB cord-000248-zueoyesj 245 3 the the DT cord-000248-zueoyesj 245 4 M M NNP cord-000248-zueoyesj 245 5 - - HYPH cord-000248-zueoyesj 245 6 normal normal JJ cord-000248-zueoyesj 245 7 measure measure NN cord-000248-zueoyesj 245 8 , , , cord-000248-zueoyesj 245 9 we -PRON- PRP cord-000248-zueoyesj 245 10 need need VBP cord-000248-zueoyesj 245 11 to to TO cord-000248-zueoyesj 245 12 define define VB cord-000248-zueoyesj 245 13 the the DT cord-000248-zueoyesj 245 14 average average JJ cord-000248-zueoyesj 245 15 gene gene NN cord-000248-zueoyesj 245 16 expression expression NN cord-000248-zueoyesj 245 17 profile profile NN cord-000248-zueoyesj 245 18 for for IN cord-000248-zueoyesj 245 19 a a DT cord-000248-zueoyesj 245 20 normal normal JJ cord-000248-zueoyesj 245 21 cell cell NN cord-000248-zueoyesj 245 22 ( ( -LRB- cord-000248-zueoyesj 245 23 which which WDT cord-000248-zueoyesj 245 24 we -PRON- PRP cord-000248-zueoyesj 245 25 call call VBP cord-000248-zueoyesj 245 26 P P NNP cord-000248-zueoyesj 245 27 ave ave NNP cord-000248-zueoyesj 245 28 ) ) -RRB- cord-000248-zueoyesj 245 29 . . . cord-000248-zueoyesj 246 1 We -PRON- PRP cord-000248-zueoyesj 246 2 thus thus RB cord-000248-zueoyesj 246 3 resort resort VBP cord-000248-zueoyesj 246 4 to to IN cord-000248-zueoyesj 246 5 the the DT cord-000248-zueoyesj 246 6 three three CD cord-000248-zueoyesj 246 7 normal normal JJ cord-000248-zueoyesj 246 8 skin skin NN cord-000248-zueoyesj 246 9 profiles profile NNS cord-000248-zueoyesj 246 10 and and CC cord-000248-zueoyesj 246 11 we -PRON- PRP cord-000248-zueoyesj 246 12 produce produce VBP cord-000248-zueoyesj 246 13 the the DT cord-000248-zueoyesj 246 14 average average NN cord-000248-zueoyesj 246 15 based base VBN cord-000248-zueoyesj 246 16 on on IN cord-000248-zueoyesj 246 17 these these DT cord-000248-zueoyesj 246 18 profiles profile NNS cord-000248-zueoyesj 246 19 ( ( -LRB- cord-000248-zueoyesj 246 20 details detail NNS cord-000248-zueoyesj 246 21 for for IN cord-000248-zueoyesj 246 22 computing compute VBG cord-000248-zueoyesj 246 23 the the DT cord-000248-zueoyesj 246 24 average average JJ cord-000248-zueoyesj 246 25 profiles profile NNS cord-000248-zueoyesj 246 26 are be VBP cord-000248-zueoyesj 246 27 given give VBN cord-000248-zueoyesj 246 28 in in IN cord-000248-zueoyesj 246 29 the the DT cord-000248-zueoyesj 246 30 ' ' `` cord-000248-zueoyesj 246 31 Materials material NNS cord-000248-zueoyesj 246 32 and and CC cord-000248-zueoyesj 246 33 Methods Methods NNPS cord-000248-zueoyesj 246 34 ' ' POS cord-000248-zueoyesj 246 35 section section NN cord-000248-zueoyesj 246 36 ) ) -RRB- cord-000248-zueoyesj 246 37 . . . cord-000248-zueoyesj 247 1 We -PRON- PRP cord-000248-zueoyesj 247 2 call call VBP cord-000248-zueoyesj 247 3 M M NNP cord-000248-zueoyesj 247 4 - - NN cord-000248-zueoyesj 247 5 skin skin NN cord-000248-zueoyesj 247 6 the the DT cord-000248-zueoyesj 247 7 resulting result VBG cord-000248-zueoyesj 247 8 measure measure NN cord-000248-zueoyesj 247 9 that that WDT cord-000248-zueoyesj 247 10 relies rely VBZ cord-000248-zueoyesj 247 11 on on IN cord-000248-zueoyesj 247 12 this this DT cord-000248-zueoyesj 247 13 profile profile NN cord-000248-zueoyesj 247 14 . . . cord-000248-zueoyesj 248 1 Analogously analogously RB cord-000248-zueoyesj 248 2 , , , cord-000248-zueoyesj 248 3 we -PRON- PRP cord-000248-zueoyesj 248 4 need need VBP cord-000248-zueoyesj 248 5 to to TO cord-000248-zueoyesj 248 6 compute compute VB cord-000248-zueoyesj 248 7 a a DT cord-000248-zueoyesj 248 8 pattern pattern NN cord-000248-zueoyesj 248 9 for for IN cord-000248-zueoyesj 248 10 M m NN cord-000248-zueoyesj 248 11 - - HYPH cord-000248-zueoyesj 248 12 metastasis metastasis NN cord-000248-zueoyesj 248 13 , , , cord-000248-zueoyesj 248 14 and and CC cord-000248-zueoyesj 248 15 we -PRON- PRP cord-000248-zueoyesj 248 16 proceed proceed VBP cord-000248-zueoyesj 248 17 to to TO cord-000248-zueoyesj 248 18 calculate calculate VB cord-000248-zueoyesj 248 19 the the DT cord-000248-zueoyesj 248 20 P p NN cord-000248-zueoyesj 248 21 ave ave NNP cord-000248-zueoyesj 248 22 profile profile NN cord-000248-zueoyesj 248 23 averaging average VBG cord-000248-zueoyesj 248 24 over over IN cord-000248-zueoyesj 248 25 the the DT cord-000248-zueoyesj 248 26 19 19 CD cord-000248-zueoyesj 248 27 metastases metastasis NNS cord-000248-zueoyesj 248 28 samples sample NNS cord-000248-zueoyesj 248 29 . . . cord-000248-zueoyesj 249 1 The the DT cord-000248-zueoyesj 249 2 result result NN cord-000248-zueoyesj 249 3 is be VBZ cord-000248-zueoyesj 249 4 encouraging encouraging JJ cord-000248-zueoyesj 249 5 , , , cord-000248-zueoyesj 249 6 as as IN cord-000248-zueoyesj 249 7 samples sample NNS cord-000248-zueoyesj 249 8 plotted plot VBN cord-000248-zueoyesj 249 9 in in IN cord-000248-zueoyesj 249 10 the the DT cord-000248-zueoyesj 249 11 ( ( -LRB- cord-000248-zueoyesj 249 12 M m NN cord-000248-zueoyesj 249 13 - - HYPH cord-000248-zueoyesj 249 14 skin skin NN cord-000248-zueoyesj 249 15 , , , cord-000248-zueoyesj 249 16 M M NNP cord-000248-zueoyesj 249 17 - - HYPH cord-000248-zueoyesj 249 18 metastasis)-plane metastasis)-plane NNP cord-000248-zueoyesj 249 19 cluster cluster NN cord-000248-zueoyesj 249 20 in in IN cord-000248-zueoyesj 249 21 groups group NNS cord-000248-zueoyesj 249 22 , , , cord-000248-zueoyesj 249 23 showing show VBG cord-000248-zueoyesj 249 24 an an DT cord-000248-zueoyesj 249 25 important important JJ cord-000248-zueoyesj 249 26 M m NN cord-000248-zueoyesj 249 27 - - HYPH cord-000248-zueoyesj 249 28 skin skin NN cord-000248-zueoyesj 249 29 complexity complexity NN cord-000248-zueoyesj 249 30 transition transition NN cord-000248-zueoyesj 249 31 between between IN cord-000248-zueoyesj 249 32 normal normal JJ cord-000248-zueoyesj 249 33 skin skin NN cord-000248-zueoyesj 249 34 cells cell NNS cord-000248-zueoyesj 249 35 and and CC cord-000248-zueoyesj 249 36 nevi nevus NNS cord-000248-zueoyesj 249 37 . . . cord-000248-zueoyesj 250 1 Most most RBS cord-000248-zueoyesj 250 2 importantly importantly RB cord-000248-zueoyesj 250 3 , , , cord-000248-zueoyesj 250 4 this this DT cord-000248-zueoyesj 250 5 method method NN cord-000248-zueoyesj 250 6 naturally naturally RB cord-000248-zueoyesj 250 7 shows show VBZ cord-000248-zueoyesj 250 8 that that IN cord-000248-zueoyesj 250 9 some some DT cord-000248-zueoyesj 250 10 of of IN cord-000248-zueoyesj 250 11 the the DT cord-000248-zueoyesj 250 12 metastatic metastatic JJ cord-000248-zueoyesj 250 13 samples sample NNS cord-000248-zueoyesj 250 14 have have VBP cord-000248-zueoyesj 250 15 a a DT cord-000248-zueoyesj 250 16 large large JJ cord-000248-zueoyesj 250 17 value value NN cord-000248-zueoyesj 250 18 of of IN cord-000248-zueoyesj 250 19 M m NN cord-000248-zueoyesj 250 20 - - HYPH cord-000248-zueoyesj 250 21 skin skin NN cord-000248-zueoyesj 250 22 complexity complexity NN cord-000248-zueoyesj 250 23 , , , cord-000248-zueoyesj 250 24 so so CC cord-000248-zueoyesj 250 25 we -PRON- PRP cord-000248-zueoyesj 250 26 present present VBP cord-000248-zueoyesj 250 27 the the DT cord-000248-zueoyesj 250 28 results result NNS cord-000248-zueoyesj 250 29 of of IN cord-000248-zueoyesj 250 30 another another DT cord-000248-zueoyesj 250 31 experiment experiment NN cord-000248-zueoyesj 250 32 , , , cord-000248-zueoyesj 250 33 aimed aim VBN cord-000248-zueoyesj 250 34 at at IN cord-000248-zueoyesj 250 35 clarifying clarify VBG cord-000248-zueoyesj 250 36 this this DT cord-000248-zueoyesj 250 37 fact fact NN cord-000248-zueoyesj 250 38 . . . cord-000248-zueoyesj 251 1 In in IN cord-000248-zueoyesj 251 2 their -PRON- PRP$ cord-000248-zueoyesj 251 3 original original JJ cord-000248-zueoyesj 251 4 publication publication NN cord-000248-zueoyesj 251 5 , , , cord-000248-zueoyesj 251 6 Haqq Haqq NNP cord-000248-zueoyesj 251 7 et et NNP cord-000248-zueoyesj 251 8 al al NNP cord-000248-zueoyesj 251 9 . . . cord-000248-zueoyesj 251 10 classified classify VBD cord-000248-zueoyesj 251 11 the the DT cord-000248-zueoyesj 251 12 melanoma melanoma NN cord-000248-zueoyesj 251 13 metastases metastasis NNS cord-000248-zueoyesj 251 14 in in IN cord-000248-zueoyesj 251 15 two two CD cord-000248-zueoyesj 251 16 groups group NNS cord-000248-zueoyesj 251 17 due due JJ cord-000248-zueoyesj 251 18 to to IN cord-000248-zueoyesj 251 19 their -PRON- PRP$ cord-000248-zueoyesj 251 20 molecular molecular JJ cord-000248-zueoyesj 251 21 profiles profile NNS cord-000248-zueoyesj 251 22 : : : cord-000248-zueoyesj 251 23 five five CD cord-000248-zueoyesj 251 24 samples sample NNS cord-000248-zueoyesj 251 25 were be VBD cord-000248-zueoyesj 251 26 classified classify VBN cord-000248-zueoyesj 251 27 as as IN cord-000248-zueoyesj 251 28 ' ' `` cord-000248-zueoyesj 251 29 Type type NN cord-000248-zueoyesj 251 30 I -PRON- PRP cord-000248-zueoyesj 251 31 ' ' '' cord-000248-zueoyesj 251 32 and and CC cord-000248-zueoyesj 251 33 fourteen fourteen CD cord-000248-zueoyesj 251 34 as as IN cord-000248-zueoyesj 251 35 ' ' `` cord-000248-zueoyesj 251 36 Type type NN cord-000248-zueoyesj 251 37 2 2 CD cord-000248-zueoyesj 251 38 ' ' '' cord-000248-zueoyesj 251 39 based base VBN cord-000248-zueoyesj 251 40 on on IN cord-000248-zueoyesj 251 41 a a DT cord-000248-zueoyesj 251 42 hierarchical hierarchical JJ cord-000248-zueoyesj 251 43 clustering clustering NN cord-000248-zueoyesj 251 44 approach approach NN cord-000248-zueoyesj 251 45 . . . cord-000248-zueoyesj 252 1 Our -PRON- PRP$ cord-000248-zueoyesj 252 2 result result NN cord-000248-zueoyesj 252 3 reinforced reinforce VBD cord-000248-zueoyesj 252 4 the the DT cord-000248-zueoyesj 252 5 view view NN cord-000248-zueoyesj 252 6 that that IN cord-000248-zueoyesj 252 7 the the DT cord-000248-zueoyesj 252 8 Type Type NNP cord-000248-zueoyesj 252 9 II II NNP cord-000248-zueoyesj 252 10 melanomas melanoma NNS cord-000248-zueoyesj 252 11 metastasis metastasis NN cord-000248-zueoyesj 252 12 is be VBZ cord-000248-zueoyesj 252 13 a a DT cord-000248-zueoyesj 252 14 pretty pretty RB cord-000248-zueoyesj 252 15 homogeneous homogeneous JJ cord-000248-zueoyesj 252 16 group group NN cord-000248-zueoyesj 252 17 , , , cord-000248-zueoyesj 252 18 we -PRON- PRP cord-000248-zueoyesj 252 19 will will MD cord-000248-zueoyesj 252 20 present present VB cord-000248-zueoyesj 252 21 the the DT cord-000248-zueoyesj 252 22 results result NNS cord-000248-zueoyesj 252 23 on on IN cord-000248-zueoyesj 252 24 the the DT cord-000248-zueoyesj 252 25 ( ( -LRB- cord-000248-zueoyesj 252 26 Mskin Mskin NNP cord-000248-zueoyesj 252 27 , , , cord-000248-zueoyesj 252 28 M M NNP cord-000248-zueoyesj 252 29 - - HYPH cord-000248-zueoyesj 252 30 metastasis metastasis NN cord-000248-zueoyesj 252 31 I)-plane I)-plane NNP cord-000248-zueoyesj 252 32 . . . cord-000248-zueoyesj 253 1 This this DT cord-000248-zueoyesj 253 2 means mean VBZ cord-000248-zueoyesj 253 3 that that IN cord-000248-zueoyesj 253 4 now now RB cord-000248-zueoyesj 253 5 the the DT cord-000248-zueoyesj 253 6 P P NNP cord-000248-zueoyesj 253 7 ave ave NNP cord-000248-zueoyesj 253 8 profile profile NN cord-000248-zueoyesj 253 9 will will MD cord-000248-zueoyesj 253 10 not not RB cord-000248-zueoyesj 253 11 be be VB cord-000248-zueoyesj 253 12 obtained obtain VBN cord-000248-zueoyesj 253 13 by by IN cord-000248-zueoyesj 253 14 averaging average VBG cord-000248-zueoyesj 253 15 over over IN cord-000248-zueoyesj 253 16 the the DT cord-000248-zueoyesj 253 17 19 19 CD cord-000248-zueoyesj 253 18 metastases metastasis NNS cord-000248-zueoyesj 253 19 samples sample NNS cord-000248-zueoyesj 253 20 , , , cord-000248-zueoyesj 253 21 but but CC cord-000248-zueoyesj 253 22 instead instead RB cord-000248-zueoyesj 253 23 using use VBG cord-000248-zueoyesj 253 24 only only RB cord-000248-zueoyesj 253 25 the the DT cord-000248-zueoyesj 253 26 14 14 CD cord-000248-zueoyesj 253 27 samples sample NNS cord-000248-zueoyesj 253 28 which which WDT cord-000248-zueoyesj 253 29 have have VBP cord-000248-zueoyesj 253 30 been be VBN cord-000248-zueoyesj 253 31 labelled label VBN cord-000248-zueoyesj 253 32 as as IN cord-000248-zueoyesj 253 33 ' ' `` cord-000248-zueoyesj 253 34 Type Type NNP cord-000248-zueoyesj 253 35 II II NNP cord-000248-zueoyesj 253 36 ' ' '' cord-000248-zueoyesj 253 37 . . . cord-000248-zueoyesj 254 1 As as IN cord-000248-zueoyesj 254 2 such such JJ cord-000248-zueoyesj 254 3 , , , cord-000248-zueoyesj 254 4 we -PRON- PRP cord-000248-zueoyesj 254 5 aim aim VBP cord-000248-zueoyesj 254 6 at at IN cord-000248-zueoyesj 254 7 revealing reveal VBG cord-000248-zueoyesj 254 8 if if IN cord-000248-zueoyesj 254 9 Type type NN cord-000248-zueoyesj 254 10 I -PRON- PRP cord-000248-zueoyesj 254 11 samples sample NNS cord-000248-zueoyesj 254 12 are be VBP cord-000248-zueoyesj 254 13 indeed indeed RB cord-000248-zueoyesj 254 14 different different JJ cord-000248-zueoyesj 254 15 in in IN cord-000248-zueoyesj 254 16 this this DT cord-000248-zueoyesj 254 17 plane plane NN cord-000248-zueoyesj 254 18 , , , cord-000248-zueoyesj 254 19 and and CC cord-000248-zueoyesj 254 20 if if IN cord-000248-zueoyesj 254 21 other other JJ cord-000248-zueoyesj 254 22 clusters cluster NNS cord-000248-zueoyesj 254 23 are be VBP cord-000248-zueoyesj 254 24 also also RB cord-000248-zueoyesj 254 25 present present JJ cord-000248-zueoyesj 254 26 . . . cord-000248-zueoyesj 255 1 Figure figure NN cord-000248-zueoyesj 255 2 5 5 CD cord-000248-zueoyesj 255 3 presents present VBZ cord-000248-zueoyesj 255 4 the the DT cord-000248-zueoyesj 255 5 results result NNS cord-000248-zueoyesj 255 6 . . . cord-000248-zueoyesj 256 1 The the DT cord-000248-zueoyesj 256 2 first first JJ cord-000248-zueoyesj 256 3 fact fact NN cord-000248-zueoyesj 256 4 worth worth JJ cord-000248-zueoyesj 256 5 commenting comment VBG cord-000248-zueoyesj 256 6 is be VBZ cord-000248-zueoyesj 256 7 the the DT cord-000248-zueoyesj 256 8 pronounced pronounced JJ cord-000248-zueoyesj 256 9 gap gap NN cord-000248-zueoyesj 256 10 between between IN cord-000248-zueoyesj 256 11 normal normal JJ cord-000248-zueoyesj 256 12 skin skin NN cord-000248-zueoyesj 256 13 samples sample NNS cord-000248-zueoyesj 256 14 and and CC cord-000248-zueoyesj 256 15 the the DT cord-000248-zueoyesj 256 16 nevi nevus NNS cord-000248-zueoyesj 256 17 , , , cord-000248-zueoyesj 256 18 primary primary JJ cord-000248-zueoyesj 256 19 , , , cord-000248-zueoyesj 256 20 and and CC cord-000248-zueoyesj 256 21 metastatic metastatic JJ cord-000248-zueoyesj 256 22 melanoma melanoma NN cord-000248-zueoyesj 256 23 samples sample NNS cord-000248-zueoyesj 256 24 as as IN cord-000248-zueoyesj 256 25 revealed reveal VBN cord-000248-zueoyesj 256 26 by by IN cord-000248-zueoyesj 256 27 the the DT cord-000248-zueoyesj 256 28 Mskin Mskin NNP cord-000248-zueoyesj 256 29 measure measure NN cord-000248-zueoyesj 256 30 . . . cord-000248-zueoyesj 257 1 Note note VB cord-000248-zueoyesj 257 2 also also RB cord-000248-zueoyesj 257 3 that that IN cord-000248-zueoyesj 257 4 the the DT cord-000248-zueoyesj 257 5 M M NNP cord-000248-zueoyesj 257 6 - - HYPH cord-000248-zueoyesj 257 7 skin skin NN cord-000248-zueoyesj 257 8 is be VBZ cord-000248-zueoyesj 257 9 based base VBN cord-000248-zueoyesj 257 10 on on IN cord-000248-zueoyesj 257 11 the the DT cord-000248-zueoyesj 257 12 average average JJ cord-000248-zueoyesj 257 13 profile profile NN cord-000248-zueoyesj 257 14 that that DT cord-000248-zueoyesj 257 15 of of IN cord-000248-zueoyesj 257 16 the the DT cord-000248-zueoyesj 257 17 normal normal JJ cord-000248-zueoyesj 257 18 samples sample NNS cord-000248-zueoyesj 257 19 , , , cord-000248-zueoyesj 257 20 which which WDT cord-000248-zueoyesj 257 21 indicates indicate VBZ cord-000248-zueoyesj 257 22 that that IN cord-000248-zueoyesj 257 23 no no DT cord-000248-zueoyesj 257 24 information information NN cord-000248-zueoyesj 257 25 about about IN cord-000248-zueoyesj 257 26 the the DT cord-000248-zueoyesj 257 27 profiles profile NNS cord-000248-zueoyesj 257 28 of of IN cord-000248-zueoyesj 257 29 metastasis metastasis NN cord-000248-zueoyesj 257 30 are be VBP cord-000248-zueoyesj 257 31 used use VBN cord-000248-zueoyesj 257 32 , , , cord-000248-zueoyesj 257 33 yet yet CC cord-000248-zueoyesj 257 34 M m NN cord-000248-zueoyesj 257 35 - - HYPH cord-000248-zueoyesj 257 36 skin skin NN cord-000248-zueoyesj 257 37 reveals reveal VBZ cord-000248-zueoyesj 257 38 that that IN cord-000248-zueoyesj 257 39 increasing increase VBG cord-000248-zueoyesj 257 40 values value NNS cord-000248-zueoyesj 257 41 of of IN cord-000248-zueoyesj 257 42 this this DT cord-000248-zueoyesj 257 43 measure measure NN cord-000248-zueoyesj 257 44 may may MD cord-000248-zueoyesj 257 45 be be VB cord-000248-zueoyesj 257 46 linked link VBN cord-000248-zueoyesj 257 47 with with IN cord-000248-zueoyesj 257 48 a a DT cord-000248-zueoyesj 257 49 ' ' `` cord-000248-zueoyesj 257 50 progression progression NN cord-000248-zueoyesj 257 51 ' ' '' cord-000248-zueoyesj 257 52 from from IN cord-000248-zueoyesj 257 53 nevi nevus NNS cord-000248-zueoyesj 257 54 to to IN cord-000248-zueoyesj 257 55 primary primary JJ cord-000248-zueoyesj 257 56 and and CC cord-000248-zueoyesj 257 57 metastasis metastasis NN cord-000248-zueoyesj 257 58 melanoma melanoma NN cord-000248-zueoyesj 257 59 profiles profile NNS cord-000248-zueoyesj 257 60 . . . cord-000248-zueoyesj 258 1 We -PRON- PRP cord-000248-zueoyesj 258 2 now now RB cord-000248-zueoyesj 258 3 introduce introduce VBP cord-000248-zueoyesj 258 4 another another DT cord-000248-zueoyesj 258 5 useful useful JJ cord-000248-zueoyesj 258 6 technique technique NN cord-000248-zueoyesj 258 7 to to TO cord-000248-zueoyesj 258 8 identify identify VB cord-000248-zueoyesj 258 9 genes gene NNS cord-000248-zueoyesj 258 10 which which WDT cord-000248-zueoyesj 258 11 correlate correlate VBP cord-000248-zueoyesj 258 12 with with IN cord-000248-zueoyesj 258 13 the the DT cord-000248-zueoyesj 258 14 transitions transition NNS cord-000248-zueoyesj 258 15 . . . cord-000248-zueoyesj 259 1 The the DT cord-000248-zueoyesj 259 2 challenge challenge NN cord-000248-zueoyesj 259 3 is be VBZ cord-000248-zueoyesj 259 4 to to TO cord-000248-zueoyesj 259 5 find find VB cord-000248-zueoyesj 259 6 genes gene NNS cord-000248-zueoyesj 259 7 which which WDT cord-000248-zueoyesj 259 8 are be VBP cord-000248-zueoyesj 259 9 related relate VBN cord-000248-zueoyesj 259 10 with with IN cord-000248-zueoyesj 259 11 the the DT cord-000248-zueoyesj 259 12 progression progression NN cord-000248-zueoyesj 259 13 towards towards IN cord-000248-zueoyesj 259 14 metastases metastasis NNS cord-000248-zueoyesj 259 15 profiles profile NNS cord-000248-zueoyesj 259 16 , , , cord-000248-zueoyesj 259 17 even even RB cord-000248-zueoyesj 259 18 when when WRB cord-000248-zueoyesj 259 19 we -PRON- PRP cord-000248-zueoyesj 259 20 recognize recognize VBP cord-000248-zueoyesj 259 21 that that IN cord-000248-zueoyesj 259 22 there there RB cord-000248-zueoyesj 259 23 the the DT cord-000248-zueoyesj 259 24 group group NN cord-000248-zueoyesj 259 25 of of IN cord-000248-zueoyesj 259 26 metastasis metastasis NN cord-000248-zueoyesj 259 27 samples sample NNS cord-000248-zueoyesj 259 28 is be VBZ cord-000248-zueoyesj 259 29 heterogeneous heterogeneous JJ cord-000248-zueoyesj 259 30 ( ( -LRB- cord-000248-zueoyesj 259 31 containing contain VBG cord-000248-zueoyesj 259 32 at at RB cord-000248-zueoyesj 259 33 least least RBS cord-000248-zueoyesj 259 34 two two CD cord-000248-zueoyesj 259 35 groups group NNS cord-000248-zueoyesj 259 36 ) ) -RRB- cord-000248-zueoyesj 259 37 . . . cord-000248-zueoyesj 260 1 Since since IN cord-000248-zueoyesj 260 2 the the DT cord-000248-zueoyesj 260 3 final final JJ cord-000248-zueoyesj 260 4 outcome outcome NN cord-000248-zueoyesj 260 5 of of IN cord-000248-zueoyesj 260 6 Figure Figure NNP cord-000248-zueoyesj 260 7 4 4 CD cord-000248-zueoyesj 260 8 and and CC cord-000248-zueoyesj 260 9 Figure Figure NNP cord-000248-zueoyesj 260 10 5 5 CD cord-000248-zueoyesj 260 11 is be VBZ cord-000248-zueoyesj 260 12 that that IN cord-000248-zueoyesj 260 13 the the DT cord-000248-zueoyesj 260 14 Normalized Normalized NNP cord-000248-zueoyesj 260 15 Shannon Shannon NNP cord-000248-zueoyesj 260 16 Entropy Entropy NNP cord-000248-zueoyesj 260 17 does do VBZ cord-000248-zueoyesj 260 18 not not RB cord-000248-zueoyesj 260 19 help help VB cord-000248-zueoyesj 260 20 much much JJ cord-000248-zueoyesj 260 21 in in IN cord-000248-zueoyesj 260 22 this this DT cord-000248-zueoyesj 260 23 experimental experimental JJ cord-000248-zueoyesj 260 24 scenario scenario NN cord-000248-zueoyesj 260 25 , , , cord-000248-zueoyesj 260 26 we -PRON- PRP cord-000248-zueoyesj 260 27 will will MD cord-000248-zueoyesj 260 28 concentrate concentrate VB cord-000248-zueoyesj 260 29 only only RB cord-000248-zueoyesj 260 30 on on IN cord-000248-zueoyesj 260 31 one one CD cord-000248-zueoyesj 260 32 of of IN cord-000248-zueoyesj 260 33 the the DT cord-000248-zueoyesj 260 34 multiplicative multiplicative JJ cord-000248-zueoyesj 260 35 factors factor NNS cord-000248-zueoyesj 260 36 of of IN cord-000248-zueoyesj 260 37 the the DT cord-000248-zueoyesj 260 38 Mcomplexities Mcomplexities NNPS cord-000248-zueoyesj 260 39 , , , cord-000248-zueoyesj 260 40 the the DT cord-000248-zueoyesj 260 41 Jensen Jensen NNP cord-000248-zueoyesj 260 42 - - HYPH cord-000248-zueoyesj 260 43 Shannon Shannon NNP cord-000248-zueoyesj 260 44 divergence divergence NN cord-000248-zueoyesj 260 45 . . . cord-000248-zueoyesj 261 1 We -PRON- PRP cord-000248-zueoyesj 261 2 compute compute VBP cord-000248-zueoyesj 261 3 two two CD cord-000248-zueoyesj 261 4 P p NN cord-000248-zueoyesj 261 5 ave ave NNP cord-000248-zueoyesj 261 6 profiles profile NNS cord-000248-zueoyesj 261 7 , , , cord-000248-zueoyesj 261 8 one one CD cord-000248-zueoyesj 261 9 with with IN cord-000248-zueoyesj 261 10 the the DT cord-000248-zueoyesj 261 11 normal normal JJ cord-000248-zueoyesj 261 12 skin skin NN cord-000248-zueoyesj 261 13 samples sample NNS cord-000248-zueoyesj 261 14 only only RB cord-000248-zueoyesj 261 15 , , , cord-000248-zueoyesj 261 16 and and CC cord-000248-zueoyesj 261 17 the the DT cord-000248-zueoyesj 261 18 other other JJ cord-000248-zueoyesj 261 19 with with IN cord-000248-zueoyesj 261 20 all all PDT cord-000248-zueoyesj 261 21 the the DT cord-000248-zueoyesj 261 22 metastasis metastasis NN cord-000248-zueoyesj 261 23 samples sample NNS cord-000248-zueoyesj 261 24 ( ( -LRB- cord-000248-zueoyesj 261 25 regardless regardless RB cord-000248-zueoyesj 261 26 their -PRON- PRP$ cord-000248-zueoyesj 261 27 type type NN cord-000248-zueoyesj 261 28 ) ) -RRB- cord-000248-zueoyesj 261 29 . . . cord-000248-zueoyesj 262 1 We -PRON- PRP cord-000248-zueoyesj 262 2 will will MD cord-000248-zueoyesj 262 3 call call VB cord-000248-zueoyesj 262 4 the the DT cord-000248-zueoyesj 262 5 two two CD cord-000248-zueoyesj 262 6 divergences divergence NNS cord-000248-zueoyesj 262 7 JSM0 JSM0 NNP cord-000248-zueoyesj 262 8 and and CC cord-000248-zueoyesj 262 9 JSM5 JSM5 NNP cord-000248-zueoyesj 262 10 respectively respectively RB cord-000248-zueoyesj 262 11 . . . cord-000248-zueoyesj 263 1 We -PRON- PRP cord-000248-zueoyesj 263 2 then then RB cord-000248-zueoyesj 263 3 compute compute VBP cord-000248-zueoyesj 263 4 the the DT cord-000248-zueoyesj 263 5 Spearman Spearman NNP cord-000248-zueoyesj 263 6 correlation correlation NN cord-000248-zueoyesj 263 7 of of IN cord-000248-zueoyesj 263 8 the the DT cord-000248-zueoyesj 263 9 profile profile NN cord-000248-zueoyesj 263 10 of of IN cord-000248-zueoyesj 263 11 all all DT cord-000248-zueoyesj 263 12 gene gene NN cord-000248-zueoyesj 263 13 probes probe NNS cord-000248-zueoyesj 263 14 in in IN cord-000248-zueoyesj 263 15 the the DT cord-000248-zueoyesj 263 16 array array NN cord-000248-zueoyesj 263 17 across across IN cord-000248-zueoyesj 263 18 the the DT cord-000248-zueoyesj 263 19 37 37 CD cord-000248-zueoyesj 263 20 samples sample NNS cord-000248-zueoyesj 263 21 to to IN cord-000248-zueoyesj 263 22 both both CC cord-000248-zueoyesj 263 23 JSM0 JSM0 NNP cord-000248-zueoyesj 263 24 and and CC cord-000248-zueoyesj 263 25 JSM5 JSM5 NNP cord-000248-zueoyesj 263 26 . . . cord-000248-zueoyesj 264 1 We -PRON- PRP cord-000248-zueoyesj 264 2 have have VBP cord-000248-zueoyesj 264 3 listed list VBN cord-000248-zueoyesj 264 4 all all DT cord-000248-zueoyesj 264 5 probes probe NNS cord-000248-zueoyesj 264 6 according accord VBG cord-000248-zueoyesj 264 7 to to IN cord-000248-zueoyesj 264 8 the the DT cord-000248-zueoyesj 264 9 absolute absolute JJ cord-000248-zueoyesj 264 10 value value NN cord-000248-zueoyesj 264 11 of of IN cord-000248-zueoyesj 264 12 the the DT cord-000248-zueoyesj 264 13 difference difference NN cord-000248-zueoyesj 264 14 of of IN cord-000248-zueoyesj 264 15 these these DT cord-000248-zueoyesj 264 16 correlations correlation NNS cord-000248-zueoyesj 264 17 , , , cord-000248-zueoyesj 264 18 i.e. i.e. FW cord-000248-zueoyesj 264 19 Abs abs NN cord-000248-zueoyesj 264 20 . . . cord-000248-zueoyesj 265 1 Diff diff UH cord-000248-zueoyesj 265 2 . . . cord-000248-zueoyesj 266 1 ( ( -LRB- cord-000248-zueoyesj 266 2 probe probe NN cord-000248-zueoyesj 266 3 ) ) -RRB- cord-000248-zueoyesj 266 4 = = NFP cord-000248-zueoyesj 266 5 |JSM0(probe)2JSM5 |JSM0(probe)2JSM5 NNP cord-000248-zueoyesj 267 1 ( ( -LRB- cord-000248-zueoyesj 267 2 probe)| probe)| VBN cord-000248-zueoyesj 267 3 in in IN cord-000248-zueoyesj 267 4 decreasing decrease VBG cord-000248-zueoyesj 267 5 order order NN cord-000248-zueoyesj 267 6 . . . cord-000248-zueoyesj 268 1 The the DT cord-000248-zueoyesj 268 2 results result NNS cord-000248-zueoyesj 268 3 are be VBP cord-000248-zueoyesj 268 4 provided provide VBN cord-000248-zueoyesj 268 5 as as IN cord-000248-zueoyesj 268 6 Haqq-PLoSONE-SupFile.xls Haqq-PLoSONE-SupFile.xls NNP cord-000248-zueoyesj 268 7 , , , cord-000248-zueoyesj 268 8 in in IN cord-000248-zueoyesj 268 9 the the DT cord-000248-zueoyesj 268 10 sheet sheet NN cord-000248-zueoyesj 268 11 labelled label VBN cord-000248-zueoyesj 268 12 ' ' '' cord-000248-zueoyesj 268 13 Results result NNS cord-000248-zueoyesj 268 14 - - HYPH cord-000248-zueoyesj 268 15 correlation correlation NN cord-000248-zueoyesj 268 16 ' ' '' cord-000248-zueoyesj 268 17 . . . cord-000248-zueoyesj 269 1 The the DT cord-000248-zueoyesj 269 2 rationale rationale NN cord-000248-zueoyesj 269 3 is be VBZ cord-000248-zueoyesj 269 4 to to TO cord-000248-zueoyesj 269 5 identify identify VB cord-000248-zueoyesj 269 6 those those DT cord-000248-zueoyesj 269 7 probes probe NNS cord-000248-zueoyesj 269 8 which which WDT cord-000248-zueoyesj 269 9 are be VBP cord-000248-zueoyesj 269 10 highly highly RB cord-000248-zueoyesj 269 11 correlated correlate VBN cord-000248-zueoyesj 269 12 ( ( -LRB- cord-000248-zueoyesj 269 13 both both CC cord-000248-zueoyesj 269 14 positively positively RB cord-000248-zueoyesj 269 15 or or CC cord-000248-zueoyesj 269 16 negatively negatively RB cord-000248-zueoyesj 269 17 ) ) -RRB- cord-000248-zueoyesj 269 18 with with IN cord-000248-zueoyesj 269 19 the the DT cord-000248-zueoyesj 269 20 Jensen Jensen NNP cord-000248-zueoyesj 269 21 - - HYPH cord-000248-zueoyesj 269 22 Shannon Shannon NNP cord-000248-zueoyesj 269 23 divergence divergence NN cord-000248-zueoyesj 269 24 of of IN cord-000248-zueoyesj 269 25 the the DT cord-000248-zueoyesj 269 26 normal normal JJ cord-000248-zueoyesj 269 27 tissue tissue NN cord-000248-zueoyesj 269 28 profile profile NN cord-000248-zueoyesj 269 29 and and CC cord-000248-zueoyesj 269 30 that that IN cord-000248-zueoyesj 269 31 ' ' '' cord-000248-zueoyesj 269 32 ' ' `` cord-000248-zueoyesj 269 33 reverse reverse NN cord-000248-zueoyesj 269 34 signs sign NNS cord-000248-zueoyesj 269 35 ' ' '' cord-000248-zueoyesj 269 36 ' ' '' cord-000248-zueoyesj 269 37 . . . cord-000248-zueoyesj 270 1 For for IN cord-000248-zueoyesj 270 2 instance instance NN cord-000248-zueoyesj 270 3 , , , cord-000248-zueoyesj 270 4 a a DT cord-000248-zueoyesj 270 5 probe probe NN cord-000248-zueoyesj 270 6 for for IN cord-000248-zueoyesj 270 7 the the DT cord-000248-zueoyesj 270 8 TP63 TP63 NNP cord-000248-zueoyesj 270 9 gene gene NN cord-000248-zueoyesj 270 10 ( ( -LRB- cord-000248-zueoyesj 270 11 Tumor tumor NN cord-000248-zueoyesj 270 12 protein protein NN cord-000248-zueoyesj 270 13 p63 p63 NN cord-000248-zueoyesj 270 14 , , , cord-000248-zueoyesj 270 15 keratinocyte keratinocyte NNP cord-000248-zueoyesj 270 16 transcription transcription NN cord-000248-zueoyesj 270 17 factor factor NN cord-000248-zueoyesj 270 18 KET KET NNP cord-000248-zueoyesj 270 19 ) ) -RRB- cord-000248-zueoyesj 270 20 , , , cord-000248-zueoyesj 270 21 AA455929 aa455929 NN cord-000248-zueoyesj 270 22 , , , cord-000248-zueoyesj 270 23 is be VBZ cord-000248-zueoyesj 270 24 ranked rank VBN cord-000248-zueoyesj 270 25 in in IN cord-000248-zueoyesj 270 26 the the DT cord-000248-zueoyesj 270 27 third third JJ cord-000248-zueoyesj 270 28 position position NN cord-000248-zueoyesj 270 29 . . . cord-000248-zueoyesj 271 1 Its -PRON- PRP$ cord-000248-zueoyesj 271 2 correlation correlation NN cord-000248-zueoyesj 271 3 with with IN cord-000248-zueoyesj 271 4 the the DT cord-000248-zueoyesj 271 5 Jensen Jensen NNP cord-000248-zueoyesj 271 6 - - HYPH cord-000248-zueoyesj 271 7 Shannon Shannon NNP cord-000248-zueoyesj 271 8 divergence divergence NN cord-000248-zueoyesj 271 9 of of IN cord-000248-zueoyesj 271 10 the the DT cord-000248-zueoyesj 271 11 normal normal JJ cord-000248-zueoyesj 271 12 skin skin NN cord-000248-zueoyesj 271 13 type type NN cord-000248-zueoyesj 271 14 is be VBZ cord-000248-zueoyesj 271 15 relatively relatively RB cord-000248-zueoyesj 271 16 high high JJ cord-000248-zueoyesj 271 17 and and CC cord-000248-zueoyesj 271 18 negative negative JJ cord-000248-zueoyesj 272 1 ( ( -LRB- cord-000248-zueoyesj 272 2 JSM0 JSM0 NNP cord-000248-zueoyesj 272 3 = = SYM cord-000248-zueoyesj 272 4 20.63632 20.63632 CD cord-000248-zueoyesj 272 5 ) ) -RRB- cord-000248-zueoyesj 273 1 while while IN cord-000248-zueoyesj 273 2 at at IN cord-000248-zueoyesj 273 3 the the DT cord-000248-zueoyesj 273 4 same same JJ cord-000248-zueoyesj 273 5 time time NN cord-000248-zueoyesj 273 6 is be VBZ cord-000248-zueoyesj 273 7 has have VBZ cord-000248-zueoyesj 273 8 a a DT cord-000248-zueoyesj 273 9 positive positive JJ cord-000248-zueoyesj 273 10 correlation correlation NN cord-000248-zueoyesj 273 11 with with IN cord-000248-zueoyesj 273 12 the the DT cord-000248-zueoyesj 273 13 Jensen Jensen NNP cord-000248-zueoyesj 273 14 - - HYPH cord-000248-zueoyesj 273 15 Shannon Shannon NNP cord-000248-zueoyesj 273 16 divergence divergence NN cord-000248-zueoyesj 273 17 of of IN cord-000248-zueoyesj 273 18 the the DT cord-000248-zueoyesj 273 19 metastasis metastasis NN cord-000248-zueoyesj 273 20 profile profile NN cord-000248-zueoyesj 273 21 ( ( -LRB- cord-000248-zueoyesj 273 22 JSM5 JSM5 NNP cord-000248-zueoyesj 273 23 = = SYM cord-000248-zueoyesj 273 24 0.62138 0.62138 CD cord-000248-zueoyesj 273 25 ) ) -RRB- cord-000248-zueoyesj 273 26 . . . cord-000248-zueoyesj 274 1 In in IN cord-000248-zueoyesj 274 2 the the DT cord-000248-zueoyesj 274 3 ranking ranking NN cord-000248-zueoyesj 274 4 , , , cord-000248-zueoyesj 274 5 the the DT cord-000248-zueoyesj 274 6 first first JJ cord-000248-zueoyesj 274 7 probe probe NN cord-000248-zueoyesj 274 8 that that WDT cord-000248-zueoyesj 274 9 presents present VBZ cord-000248-zueoyesj 274 10 the the DT cord-000248-zueoyesj 274 11 opposite opposite JJ cord-000248-zueoyesj 274 12 behaviour behaviour NN cord-000248-zueoyesj 274 13 is be VBZ cord-000248-zueoyesj 274 14 one one CD cord-000248-zueoyesj 274 15 for for IN cord-000248-zueoyesj 274 16 ADA ADA NNP cord-000248-zueoyesj 274 17 ( ( -LRB- cord-000248-zueoyesj 274 18 Adenosine adenosine NN cord-000248-zueoyesj 274 19 deaminase deaminase NNP cord-000248-zueoyesj 274 20 ) ) -RRB- cord-000248-zueoyesj 274 21 , , , cord-000248-zueoyesj 274 22 AA683578 aa683578 NN cord-000248-zueoyesj 274 23 . . . cord-000248-zueoyesj 275 1 Figure figure NN cord-000248-zueoyesj 275 2 6 6 CD cord-000248-zueoyesj 275 3 helps help VBZ cord-000248-zueoyesj 275 4 to to TO cord-000248-zueoyesj 275 5 understand understand VB cord-000248-zueoyesj 275 6 the the DT cord-000248-zueoyesj 275 7 relationship relationship NN cord-000248-zueoyesj 275 8 of of IN cord-000248-zueoyesj 275 9 these these DT cord-000248-zueoyesj 275 10 correlations correlation NNS cord-000248-zueoyesj 275 11 with with IN cord-000248-zueoyesj 275 12 expression expression NN cord-000248-zueoyesj 275 13 . . . cord-000248-zueoyesj 276 1 Not not RB cord-000248-zueoyesj 276 2 only only RB cord-000248-zueoyesj 276 3 are be VBP cord-000248-zueoyesj 276 4 these these DT cord-000248-zueoyesj 276 5 genes gene NNS cord-000248-zueoyesj 276 6 well well RB cord-000248-zueoyesj 276 7 correlated correlate VBN cord-000248-zueoyesj 276 8 with with IN cord-000248-zueoyesj 276 9 the the DT cord-000248-zueoyesj 276 10 divergences divergence NNS cord-000248-zueoyesj 276 11 , , , cord-000248-zueoyesj 276 12 they -PRON- PRP cord-000248-zueoyesj 276 13 also also RB cord-000248-zueoyesj 276 14 seem seem VBP cord-000248-zueoyesj 276 15 to to TO cord-000248-zueoyesj 276 16 be be VB cord-000248-zueoyesj 276 17 good good JJ cord-000248-zueoyesj 276 18 markers marker NNS cord-000248-zueoyesj 276 19 of of IN cord-000248-zueoyesj 276 20 the the DT cord-000248-zueoyesj 276 21 progression progression NN cord-000248-zueoyesj 276 22 from from IN cord-000248-zueoyesj 276 23 one one CD cord-000248-zueoyesj 276 24 tissue tissue NN cord-000248-zueoyesj 276 25 type type NN cord-000248-zueoyesj 276 26 profile profile NN cord-000248-zueoyesj 276 27 to to IN cord-000248-zueoyesj 276 28 the the DT cord-000248-zueoyesj 276 29 metastasis metastasis NN cord-000248-zueoyesj 276 30 profile profile NN cord-000248-zueoyesj 276 31 . . . cord-000248-zueoyesj 277 1 We -PRON- PRP cord-000248-zueoyesj 277 2 will will MD cord-000248-zueoyesj 277 3 now now RB cord-000248-zueoyesj 277 4 discuss discuss VB cord-000248-zueoyesj 277 5 three three CD cord-000248-zueoyesj 277 6 of of IN cord-000248-zueoyesj 277 7 these these DT cord-000248-zueoyesj 277 8 genes gene NNS cord-000248-zueoyesj 277 9 in in IN cord-000248-zueoyesj 277 10 the the DT cord-000248-zueoyesj 277 11 context context NN cord-000248-zueoyesj 277 12 of of IN cord-000248-zueoyesj 277 13 current current JJ cord-000248-zueoyesj 277 14 biological biological JJ cord-000248-zueoyesj 277 15 knowledge knowledge NN cord-000248-zueoyesj 277 16 on on IN cord-000248-zueoyesj 277 17 melanoma melanoma NN cord-000248-zueoyesj 277 18 drivers driver NNS cord-000248-zueoyesj 277 19 and and CC cord-000248-zueoyesj 277 20 metastatic metastatic JJ cord-000248-zueoyesj 277 21 progression progression NN cord-000248-zueoyesj 277 22 . . . cord-000248-zueoyesj 278 1 We -PRON- PRP cord-000248-zueoyesj 278 2 provide provide VBP cord-000248-zueoyesj 278 3 many many JJ cord-000248-zueoyesj 278 4 references reference NNS cord-000248-zueoyesj 278 5 for for IN cord-000248-zueoyesj 278 6 one one CD cord-000248-zueoyesj 278 7 of of IN cord-000248-zueoyesj 278 8 them -PRON- PRP cord-000248-zueoyesj 278 9 , , , cord-000248-zueoyesj 278 10 SPP1 SPP1 NNP cord-000248-zueoyesj 278 11 ( ( -LRB- cord-000248-zueoyesj 278 12 Secreted secreted NN cord-000248-zueoyesj 278 13 phosphoprotein phosphoprotein NN cord-000248-zueoyesj 278 14 1 1 CD cord-000248-zueoyesj 278 15 or or CC cord-000248-zueoyesj 278 16 Osteopontin Osteopontin NNP cord-000248-zueoyesj 278 17 ) ) -RRB- cord-000248-zueoyesj 278 18 . . . cord-000248-zueoyesj 279 1 The the DT cord-000248-zueoyesj 279 2 discussion discussion NN cord-000248-zueoyesj 279 3 on on IN cord-000248-zueoyesj 279 4 this this DT cord-000248-zueoyesj 279 5 gene gene NN cord-000248-zueoyesj 279 6 will will MD cord-000248-zueoyesj 279 7 be be VB cord-000248-zueoyesj 279 8 left leave VBN cord-000248-zueoyesj 279 9 for for IN cord-000248-zueoyesj 279 10 later later RBR cord-000248-zueoyesj 279 11 , , , cord-000248-zueoyesj 279 12 when when WRB cord-000248-zueoyesj 279 13 we -PRON- PRP cord-000248-zueoyesj 279 14 will will MD cord-000248-zueoyesj 279 15 discuss discuss VB cord-000248-zueoyesj 279 16 specifc specifc JJ cord-000248-zueoyesj 279 17 oncosystems oncosystem NNS cord-000248-zueoyesj 279 18 related relate VBN cord-000248-zueoyesj 279 19 to to IN cord-000248-zueoyesj 279 20 cell cell NN cord-000248-zueoyesj 279 21 proliferation proliferation NN cord-000248-zueoyesj 279 22 , , , cord-000248-zueoyesj 279 23 chemotaxis chemotaxis NN cord-000248-zueoyesj 279 24 and and CC cord-000248-zueoyesj 279 25 responses response NNS cord-000248-zueoyesj 279 26 to to IN cord-000248-zueoyesj 279 27 external external JJ cord-000248-zueoyesj 279 28 simulus simulus NN cord-000248-zueoyesj 279 29 . . . cord-000248-zueoyesj 280 1 Figure figure NN cord-000248-zueoyesj 280 2 7 7 CD cord-000248-zueoyesj 280 3 shows show VBZ cord-000248-zueoyesj 280 4 the the DT cord-000248-zueoyesj 280 5 expression expression NN cord-000248-zueoyesj 280 6 of of IN cord-000248-zueoyesj 280 7 ADA ADA NNP cord-000248-zueoyesj 280 8 ( ( -LRB- cord-000248-zueoyesj 280 9 Adenosine adenosine NN cord-000248-zueoyesj 280 10 deaminase deaminase NN cord-000248-zueoyesj 280 11 , , , cord-000248-zueoyesj 280 12 AA683578 aa683578 NN cord-000248-zueoyesj 280 13 ) ) -RRB- cord-000248-zueoyesj 280 14 as as IN cord-000248-zueoyesj 280 15 a a DT cord-000248-zueoyesj 280 16 function function NN cord-000248-zueoyesj 280 17 of of IN cord-000248-zueoyesj 280 18 TP63 TP63 NNP cord-000248-zueoyesj 280 19 ( ( -LRB- cord-000248-zueoyesj 280 20 keratinocyte keratinocyte NNP cord-000248-zueoyesj 280 21 transcription transcription NN cord-000248-zueoyesj 280 22 factor factor NN cord-000248-zueoyesj 280 23 KET KET NNP cord-000248-zueoyesj 280 24 , , , cord-000248-zueoyesj 280 25 AA455929 aa455929 NN cord-000248-zueoyesj 280 26 ) ) -RRB- cord-000248-zueoyesj 280 27 . . . cord-000248-zueoyesj 281 1 All all DT cord-000248-zueoyesj 281 2 normal normal JJ cord-000248-zueoyesj 281 3 skin skin NN cord-000248-zueoyesj 281 4 samples sample NNS cord-000248-zueoyesj 281 5 , , , cord-000248-zueoyesj 281 6 as as RB cord-000248-zueoyesj 281 7 well well RB cord-000248-zueoyesj 281 8 as as IN cord-000248-zueoyesj 281 9 nevi nevus NNS cord-000248-zueoyesj 281 10 and and CC cord-000248-zueoyesj 281 11 a a DT cord-000248-zueoyesj 281 12 couple couple NN cord-000248-zueoyesj 281 13 of of IN cord-000248-zueoyesj 281 14 primary primary JJ cord-000248-zueoyesj 281 15 melanomas melanoma NNS cord-000248-zueoyesj 281 16 have have VBP cord-000248-zueoyesj 281 17 relatively relatively RB cord-000248-zueoyesj 281 18 low low JJ cord-000248-zueoyesj 281 19 values value NNS cord-000248-zueoyesj 281 20 of of IN cord-000248-zueoyesj 281 21 ADA ADA NNP cord-000248-zueoyesj 281 22 but but CC cord-000248-zueoyesj 281 23 they -PRON- PRP cord-000248-zueoyesj 281 24 express express VBP cord-000248-zueoyesj 281 25 TP63 TP63 NNP cord-000248-zueoyesj 281 26 . . . cord-000248-zueoyesj 282 1 There there EX cord-000248-zueoyesj 282 2 is be VBZ cord-000248-zueoyesj 282 3 a a DT cord-000248-zueoyesj 282 4 change change NN cord-000248-zueoyesj 282 5 of of IN cord-000248-zueoyesj 282 6 roles role NNS cord-000248-zueoyesj 282 7 in in IN cord-000248-zueoyesj 282 8 metastatic metastatic JJ cord-000248-zueoyesj 282 9 and and CC cord-000248-zueoyesj 282 10 some some DT cord-000248-zueoyesj 282 11 primary primary JJ cord-000248-zueoyesj 282 12 melanomas melanoma NNS cord-000248-zueoyesj 282 13 , , , cord-000248-zueoyesj 282 14 which which WDT cord-000248-zueoyesj 282 15 have have VBP cord-000248-zueoyesj 282 16 reduced reduce VBN cord-000248-zueoyesj 282 17 TP63 TP63 NNP cord-000248-zueoyesj 282 18 expression expression NN cord-000248-zueoyesj 282 19 but but CC cord-000248-zueoyesj 282 20 increased increase VBN cord-000248-zueoyesj 282 21 values value NNS cord-000248-zueoyesj 282 22 of of IN cord-000248-zueoyesj 282 23 expression expression NN cord-000248-zueoyesj 282 24 of of IN cord-000248-zueoyesj 282 25 ADA ADA NNP cord-000248-zueoyesj 282 26 . . . cord-000248-zueoyesj 283 1 As as IN cord-000248-zueoyesj 283 2 we -PRON- PRP cord-000248-zueoyesj 283 3 will will MD cord-000248-zueoyesj 283 4 later later RB cord-000248-zueoyesj 283 5 see see VB cord-000248-zueoyesj 283 6 , , , cord-000248-zueoyesj 283 7 these these DT cord-000248-zueoyesj 283 8 events event NNS cord-000248-zueoyesj 283 9 correlate correlate VBP cord-000248-zueoyesj 283 10 with with IN cord-000248-zueoyesj 283 11 other other JJ cord-000248-zueoyesj 283 12 major major JJ cord-000248-zueoyesj 283 13 transcriptional transcriptional JJ cord-000248-zueoyesj 283 14 modifications modification NNS cord-000248-zueoyesj 283 15 which which WDT cord-000248-zueoyesj 283 16 involve involve VBP cord-000248-zueoyesj 283 17 dozens dozen NNS cord-000248-zueoyesj 283 18 of of IN cord-000248-zueoyesj 283 19 genes gene NNS cord-000248-zueoyesj 283 20 and and CC cord-000248-zueoyesj 283 21 that that IN cord-000248-zueoyesj 283 22 we -PRON- PRP cord-000248-zueoyesj 283 23 have have VBP cord-000248-zueoyesj 283 24 been be VBN cord-000248-zueoyesj 283 25 able able JJ cord-000248-zueoyesj 283 26 to to TO cord-000248-zueoyesj 283 27 map map VB cord-000248-zueoyesj 283 28 thanks thank NNS cord-000248-zueoyesj 283 29 to to IN cord-000248-zueoyesj 283 30 functional functional JJ cord-000248-zueoyesj 283 31 genomics genomic NNS cord-000248-zueoyesj 283 32 bioinformatics bioinformatics NN cord-000248-zueoyesj 283 33 tools tool NNS cord-000248-zueoyesj 283 34 . . . cord-000248-zueoyesj 284 1 The the DT cord-000248-zueoyesj 284 2 role role NN cord-000248-zueoyesj 284 3 of of IN cord-000248-zueoyesj 284 4 SPP1 SPP1 NNP cord-000248-zueoyesj 284 5 will will MD cord-000248-zueoyesj 284 6 be be VB cord-000248-zueoyesj 284 7 discussed discuss VBN cord-000248-zueoyesj 284 8 in in IN cord-000248-zueoyesj 284 9 that that DT cord-000248-zueoyesj 284 10 context context NN cord-000248-zueoyesj 284 11 after after IN cord-000248-zueoyesj 284 12 some some DT cord-000248-zueoyesj 284 13 references reference NNS cord-000248-zueoyesj 284 14 to to IN cord-000248-zueoyesj 284 15 TP63 TP63 NNP cord-000248-zueoyesj 284 16 , , , cord-000248-zueoyesj 284 17 ADA ADA NNP cord-000248-zueoyesj 284 18 , , , cord-000248-zueoyesj 284 19 and and CC cord-000248-zueoyesj 284 20 PLK1 PLK1 NNP cord-000248-zueoyesj 284 21 which which WDT cord-000248-zueoyesj 284 22 follow follow VBP cord-000248-zueoyesj 284 23 . . . cord-000248-zueoyesj 285 1 TP63 TP63 NNP cord-000248-zueoyesj 285 2 . . . cord-000248-zueoyesj 286 1 The the DT cord-000248-zueoyesj 286 2 product product NN cord-000248-zueoyesj 286 3 of of IN cord-000248-zueoyesj 286 4 this this DT cord-000248-zueoyesj 286 5 gene gene NN cord-000248-zueoyesj 286 6 [ [ -LRB- cord-000248-zueoyesj 286 7 111 111 CD cord-000248-zueoyesj 286 8 , , , cord-000248-zueoyesj 286 9 112 112 CD cord-000248-zueoyesj 286 10 ] ] -RRB- cord-000248-zueoyesj 286 11 belongs belong VBZ cord-000248-zueoyesj 286 12 to to IN cord-000248-zueoyesj 286 13 the the DT cord-000248-zueoyesj 286 14 same same JJ cord-000248-zueoyesj 286 15 protein protein NN cord-000248-zueoyesj 286 16 family family NN cord-000248-zueoyesj 286 17 of of IN cord-000248-zueoyesj 286 18 its -PRON- PRP$ cord-000248-zueoyesj 286 19 more more RBR cord-000248-zueoyesj 286 20 famous famous JJ cord-000248-zueoyesj 286 21 relative relative NN cord-000248-zueoyesj 286 22 , , , cord-000248-zueoyesj 286 23 TP53 TP53 NNP cord-000248-zueoyesj 286 24 , , , cord-000248-zueoyesj 286 25 a a DT cord-000248-zueoyesj 286 26 gene gene NN cord-000248-zueoyesj 286 27 that that WDT cord-000248-zueoyesj 286 28 is be VBZ cord-000248-zueoyesj 286 29 often often RB cord-000248-zueoyesj 286 30 mutated mutate VBN cord-000248-zueoyesj 286 31 in in IN cord-000248-zueoyesj 286 32 human human JJ cord-000248-zueoyesj 286 33 cancers cancer NNS cord-000248-zueoyesj 286 34 [ [ -LRB- cord-000248-zueoyesj 286 35 113 113 CD cord-000248-zueoyesj 286 36 ] ] -RRB- cord-000248-zueoyesj 286 37 and and CC cord-000248-zueoyesj 286 38 highly highly RB cord-000248-zueoyesj 286 39 regarded regard VBN cord-000248-zueoyesj 286 40 as as IN cord-000248-zueoyesj 286 41 a a DT cord-000248-zueoyesj 286 42 key key NN cord-000248-zueoyesj 286 43 ' ' '' cord-000248-zueoyesj 286 44 ' ' `` cord-000248-zueoyesj 286 45 tumor tumor NN cord-000248-zueoyesj 286 46 suppressor suppressor NN cord-000248-zueoyesj 286 47 ' ' '' cord-000248-zueoyesj 286 48 ' ' '' cord-000248-zueoyesj 286 49 . . . cord-000248-zueoyesj 287 1 TP63 TP63 NNP cord-000248-zueoyesj 287 2 's 's POS cord-000248-zueoyesj 287 3 product product NN cord-000248-zueoyesj 287 4 , , , cord-000248-zueoyesj 287 5 p63 p63 CD cord-000248-zueoyesj 287 6 , , , cord-000248-zueoyesj 287 7 is be VBZ cord-000248-zueoyesj 287 8 a a DT cord-000248-zueoyesj 287 9 homologous homologous JJ cord-000248-zueoyesj 287 10 protein protein NN cord-000248-zueoyesj 287 11 to to IN cord-000248-zueoyesj 287 12 p53 p53 NN cord-000248-zueoyesj 287 13 , , , cord-000248-zueoyesj 287 14 which which WDT cord-000248-zueoyesj 287 15 is be VBZ cord-000248-zueoyesj 287 16 considered consider VBN cord-000248-zueoyesj 287 17 to to TO cord-000248-zueoyesj 287 18 be be VB cord-000248-zueoyesj 287 19 phylogenetically phylogenetically RB cord-000248-zueoyesj 287 20 newer new JJR cord-000248-zueoyesj 287 21 [ [ -LRB- cord-000248-zueoyesj 287 22 114 114 CD cord-000248-zueoyesj 287 23 ] ] -RRB- cord-000248-zueoyesj 287 24 and and CC cord-000248-zueoyesj 287 25 also also RB cord-000248-zueoyesj 287 26 regarded regard VBN cord-000248-zueoyesj 287 27 as as IN cord-000248-zueoyesj 287 28 an an DT cord-000248-zueoyesj 287 29 important important JJ cord-000248-zueoyesj 287 30 apoptotic apoptotic JJ cord-000248-zueoyesj 287 31 and and CC cord-000248-zueoyesj 287 32 cell cell NN cord-000248-zueoyesj 287 33 - - HYPH cord-000248-zueoyesj 287 34 cycle cycle NN cord-000248-zueoyesj 287 35 arrest arrest NN cord-000248-zueoyesj 287 36 protein protein NN cord-000248-zueoyesj 287 37 . . . cord-000248-zueoyesj 288 1 Mice mouse NNS cord-000248-zueoyesj 288 2 that that WDT cord-000248-zueoyesj 288 3 lack lack VBP cord-000248-zueoyesj 289 1 TP53 TP53 NNS cord-000248-zueoyesj 289 2 are be VBP cord-000248-zueoyesj 289 3 born bear VBN cord-000248-zueoyesj 289 4 alive alive JJ cord-000248-zueoyesj 289 5 with with IN cord-000248-zueoyesj 289 6 a a DT cord-000248-zueoyesj 289 7 propensity propensity NN cord-000248-zueoyesj 289 8 for for IN cord-000248-zueoyesj 289 9 developing develop VBG cord-000248-zueoyesj 289 10 tumours tumour NNS cord-000248-zueoyesj 289 11 ; ; : cord-000248-zueoyesj 289 12 mice mouse NNS cord-000248-zueoyesj 289 13 that that WDT cord-000248-zueoyesj 289 14 lack lack VBP cord-000248-zueoyesj 289 15 TP63 TP63 NNP cord-000248-zueoyesj 289 16 do do VBP cord-000248-zueoyesj 289 17 not not RB cord-000248-zueoyesj 289 18 appear appear VB cord-000248-zueoyesj 289 19 to to TO cord-000248-zueoyesj 289 20 be be VB cord-000248-zueoyesj 289 21 tumour tumour NN cord-000248-zueoyesj 289 22 prone prone JJ cord-000248-zueoyesj 289 23 , , , cord-000248-zueoyesj 289 24 although although IN cord-000248-zueoyesj 289 25 , , , cord-000248-zueoyesj 289 26 new new JJ cord-000248-zueoyesj 289 27 results result NNS cord-000248-zueoyesj 289 28 are be VBP cord-000248-zueoyesj 289 29 partially partially RB cord-000248-zueoyesj 289 30 contradicting contradict VBG cord-000248-zueoyesj 289 31 earlier early JJR cord-000248-zueoyesj 289 32 findings finding NNS cord-000248-zueoyesj 289 33 [ [ -LRB- cord-000248-zueoyesj 289 34 115 115 CD cord-000248-zueoyesj 289 35 ] ] -RRB- cord-000248-zueoyesj 289 36 . . . cord-000248-zueoyesj 290 1 It -PRON- PRP cord-000248-zueoyesj 290 2 appears appear VBZ cord-000248-zueoyesj 290 3 that that IN cord-000248-zueoyesj 290 4 the the DT cord-000248-zueoyesj 290 5 diverse diverse JJ cord-000248-zueoyesj 290 6 roles role NNS cord-000248-zueoyesj 290 7 of of IN cord-000248-zueoyesj 290 8 the the DT cord-000248-zueoyesj 290 9 isoforms isoform NNS cord-000248-zueoyesj 290 10 of of IN cord-000248-zueoyesj 290 11 the the DT cord-000248-zueoyesj 290 12 p63 p63 NNP cord-000248-zueoyesj 290 13 family family NN cord-000248-zueoyesj 290 14 reveal reveal VBP cord-000248-zueoyesj 290 15 that that IN cord-000248-zueoyesj 290 16 there there EX cord-000248-zueoyesj 290 17 exists exist VBZ cord-000248-zueoyesj 290 18 a a DT cord-000248-zueoyesj 290 19 crosstalk crosstalk NN cord-000248-zueoyesj 290 20 with with IN cord-000248-zueoyesj 290 21 the the DT cord-000248-zueoyesj 290 22 different different JJ cord-000248-zueoyesj 290 23 isoforms isoform NNS cord-000248-zueoyesj 290 24 of of IN cord-000248-zueoyesj 290 25 the the DT cord-000248-zueoyesj 290 26 p53 p53 NN cord-000248-zueoyesj 290 27 family family NN cord-000248-zueoyesj 290 28 that that WDT cord-000248-zueoyesj 290 29 needs need VBZ cord-000248-zueoyesj 290 30 to to TO cord-000248-zueoyesj 290 31 be be VB cord-000248-zueoyesj 290 32 systematically systematically RB cord-000248-zueoyesj 290 33 investigated investigate VBN cord-000248-zueoyesj 290 34 [ [ -LRB- cord-000248-zueoyesj 290 35 116 116 CD cord-000248-zueoyesj 290 36 ] ] -RRB- cord-000248-zueoyesj 290 37 . . . cord-000248-zueoyesj 291 1 It -PRON- PRP cord-000248-zueoyesj 291 2 has have VBZ cord-000248-zueoyesj 291 3 recently recently RB cord-000248-zueoyesj 291 4 been be VBN cord-000248-zueoyesj 291 5 shown show VBN cord-000248-zueoyesj 291 6 that that IN cord-000248-zueoyesj 291 7 p63 p63 NN cord-000248-zueoyesj 291 8 is be VBZ cord-000248-zueoyesj 291 9 a a DT cord-000248-zueoyesj 291 10 key key JJ cord-000248-zueoyesj 291 11 regulator regulator NN cord-000248-zueoyesj 291 12 of of IN cord-000248-zueoyesj 291 13 the the DT cord-000248-zueoyesj 291 14 development development NN cord-000248-zueoyesj 291 15 of of IN cord-000248-zueoyesj 291 16 stratified stratified JJ cord-000248-zueoyesj 291 17 epithelial epithelial JJ cord-000248-zueoyesj 291 18 tissues tissue NNS cord-000248-zueoyesj 291 19 [ [ -LRB- cord-000248-zueoyesj 291 20 113 113 CD cord-000248-zueoyesj 291 21 ] ] -RRB- cord-000248-zueoyesj 291 22 and and CC cord-000248-zueoyesj 291 23 that that IN cord-000248-zueoyesj 291 24 its -PRON- PRP$ cord-000248-zueoyesj 291 25 deletion deletion NN cord-000248-zueoyesj 291 26 results result NNS cord-000248-zueoyesj 291 27 in in IN cord-000248-zueoyesj 291 28 loss loss NN cord-000248-zueoyesj 291 29 of of IN cord-000248-zueoyesj 291 30 stratified stratified JJ cord-000248-zueoyesj 291 31 epithelial epithelial NN cord-000248-zueoyesj 291 32 and and CC cord-000248-zueoyesj 291 33 of of IN cord-000248-zueoyesj 291 34 all all DT cord-000248-zueoyesj 291 35 keratinocytes keratinocyte NNS cord-000248-zueoyesj 291 36 [ [ -LRB- cord-000248-zueoyesj 291 37 117 117 CD cord-000248-zueoyesj 291 38 ] ] -RRB- cord-000248-zueoyesj 291 39 . . . cord-000248-zueoyesj 292 1 Melanocytes melanocyte NNS cord-000248-zueoyesj 292 2 also also RB cord-000248-zueoyesj 292 3 express express VBP cord-000248-zueoyesj 292 4 two two CD cord-000248-zueoyesj 292 5 isoforms isoform NNS cord-000248-zueoyesj 292 6 of of IN cord-000248-zueoyesj 292 7 p63 p63 CD cord-000248-zueoyesj 292 8 [ [ -LRB- cord-000248-zueoyesj 292 9 118 118 CD cord-000248-zueoyesj 292 10 ] ] -RRB- cord-000248-zueoyesj 292 11 , , , cord-000248-zueoyesj 292 12 but but CC cord-000248-zueoyesj 292 13 p63 p63 JJ cord-000248-zueoyesj 292 14 expression expression NN cord-000248-zueoyesj 292 15 is be VBZ cord-000248-zueoyesj 292 16 not not RB cord-000248-zueoyesj 292 17 reported report VBN cord-000248-zueoyesj 292 18 in in IN cord-000248-zueoyesj 292 19 57 57 CD cord-000248-zueoyesj 292 20 out out IN cord-000248-zueoyesj 292 21 of of IN cord-000248-zueoyesj 292 22 59 59 CD cord-000248-zueoyesj 292 23 tumors tumor NNS cord-000248-zueoyesj 292 24 in in IN cord-000248-zueoyesj 292 25 a a DT cord-000248-zueoyesj 292 26 tissue tissue NN cord-000248-zueoyesj 292 27 microarray microarray NN cord-000248-zueoyesj 292 28 study study NN cord-000248-zueoyesj 292 29 performed perform VBN cord-000248-zueoyesj 292 30 by by IN cord-000248-zueoyesj 292 31 Brinck Brinck NNP cord-000248-zueoyesj 292 32 et et NNP cord-000248-zueoyesj 292 33 al al NNP cord-000248-zueoyesj 292 34 . . . cord-000248-zueoyesj 293 1 [ [ -LRB- cord-000248-zueoyesj 293 2 119 119 CD cord-000248-zueoyesj 293 3 ] ] -RRB- cord-000248-zueoyesj 293 4 . . . cord-000248-zueoyesj 294 1 It -PRON- PRP cord-000248-zueoyesj 294 2 is be VBZ cord-000248-zueoyesj 294 3 clear clear JJ cord-000248-zueoyesj 294 4 that that IN cord-000248-zueoyesj 294 5 the the DT cord-000248-zueoyesj 294 6 the the DT cord-000248-zueoyesj 294 7 role role NN cord-000248-zueoyesj 294 8 of of IN cord-000248-zueoyesj 294 9 loss loss NN cord-000248-zueoyesj 294 10 of of IN cord-000248-zueoyesj 294 11 expression expression NN cord-000248-zueoyesj 294 12 of of IN cord-000248-zueoyesj 294 13 TP63 TP63 NNP cord-000248-zueoyesj 294 14 in in IN cord-000248-zueoyesj 294 15 melanoma melanoma NN cord-000248-zueoyesj 294 16 warrants warrant NNS cord-000248-zueoyesj 294 17 further further JJ cord-000248-zueoyesj 294 18 investigation investigation NN cord-000248-zueoyesj 294 19 . . . cord-000248-zueoyesj 295 1 ADA ADA NNP cord-000248-zueoyesj 295 2 -(Adenosine -(Adenosine NNP cord-000248-zueoyesj 295 3 deaminase deaminase NNP cord-000248-zueoyesj 295 4 ) ) -RRB- cord-000248-zueoyesj 295 5 and and CC cord-000248-zueoyesj 295 6 DPP4 DPP4 NNP cord-000248-zueoyesj 295 7 / / SYM cord-000248-zueoyesj 295 8 CD26 CD26 NNP cord-000248-zueoyesj 295 9 ( ( -LRB- cord-000248-zueoyesj 295 10 Dipeptidylpeptidase Dipeptidylpeptidase NNP cord-000248-zueoyesj 295 11 4 4 CD cord-000248-zueoyesj 295 12 , , , cord-000248-zueoyesj 295 13 CD26 CD26 NNP cord-000248-zueoyesj 295 14 , , , cord-000248-zueoyesj 295 15 adenosine adenosine NN cord-000248-zueoyesj 295 16 deaminase deaminase NN cord-000248-zueoyesj 295 17 complexing complexe VBG cord-000248-zueoyesj 295 18 protein protein NN cord-000248-zueoyesj 295 19 2 2 CD cord-000248-zueoyesj 295 20 ) ) -RRB- cord-000248-zueoyesj 295 21 . . . cord-000248-zueoyesj 296 1 A a DT cord-000248-zueoyesj 296 2 link link NN cord-000248-zueoyesj 296 3 between between IN cord-000248-zueoyesj 296 4 TP63 TP63 NNP cord-000248-zueoyesj 296 5 and and CC cord-000248-zueoyesj 296 6 ADA ADA NNP cord-000248-zueoyesj 296 7 has have VBZ cord-000248-zueoyesj 296 8 already already RB cord-000248-zueoyesj 296 9 been be VBN cord-000248-zueoyesj 296 10 reported report VBN cord-000248-zueoyesj 296 11 in in IN cord-000248-zueoyesj 296 12 the the DT cord-000248-zueoyesj 296 13 literature literature NN cord-000248-zueoyesj 296 14 . . . cord-000248-zueoyesj 297 1 ADA ADA NNP cord-000248-zueoyesj 297 2 is be VBZ cord-000248-zueoyesj 297 3 a a DT cord-000248-zueoyesj 297 4 gene gene NN cord-000248-zueoyesj 297 5 involved involve VBN cord-000248-zueoyesj 297 6 in in IN cord-000248-zueoyesj 297 7 cell cell NN cord-000248-zueoyesj 297 8 division division NN cord-000248-zueoyesj 297 9 and and CC cord-000248-zueoyesj 297 10 proliferatation proliferatation NN cord-000248-zueoyesj 297 11 [ [ -LRB- cord-000248-zueoyesj 297 12 120 120 CD cord-000248-zueoyesj 297 13 ] ] -RRB- cord-000248-zueoyesj 297 14 and and CC cord-000248-zueoyesj 297 15 it -PRON- PRP cord-000248-zueoyesj 297 16 has have VBZ cord-000248-zueoyesj 297 17 been be VBN cord-000248-zueoyesj 297 18 suggested suggest VBN cord-000248-zueoyesj 297 19 to to TO cord-000248-zueoyesj 297 20 have have VB cord-000248-zueoyesj 297 21 a a DT cord-000248-zueoyesj 297 22 regulatory regulatory JJ cord-000248-zueoyesj 297 23 role role NN cord-000248-zueoyesj 297 24 in in IN cord-000248-zueoyesj 297 25 dendritic dendritic JJ cord-000248-zueoyesj 297 26 cell cell NN cord-000248-zueoyesj 297 27 innate innate JJ cord-000248-zueoyesj 297 28 immune immune JJ cord-000248-zueoyesj 297 29 responses response NNS cord-000248-zueoyesj 297 30 [ [ -LRB- cord-000248-zueoyesj 297 31 121 121 CD cord-000248-zueoyesj 297 32 ] ] -RRB- cord-000248-zueoyesj 297 33 .Translational .translational JJ cord-000248-zueoyesj 297 34 modification modification NN cord-000248-zueoyesj 297 35 is be VBZ cord-000248-zueoyesj 297 36 also also RB cord-000248-zueoyesj 297 37 a a DT cord-000248-zueoyesj 297 38 function function NN cord-000248-zueoyesj 297 39 of of IN cord-000248-zueoyesj 297 40 p63 p63 CD cord-000248-zueoyesj 297 41 . . . cord-000248-zueoyesj 298 1 Sbisa Sbisa NNP cord-000248-zueoyesj 298 2 et et FW cord-000248-zueoyesj 298 3 al al NNP cord-000248-zueoyesj 298 4 . . NNP cord-000248-zueoyesj 298 5 have have VBP cord-000248-zueoyesj 298 6 proved prove VBN cord-000248-zueoyesj 298 7 that that IN cord-000248-zueoyesj 298 8 ADA ADA NNP cord-000248-zueoyesj 298 9 is be VBZ cord-000248-zueoyesj 298 10 a a DT cord-000248-zueoyesj 298 11 direct direct JJ cord-000248-zueoyesj 298 12 target target NN cord-000248-zueoyesj 298 13 of of IN cord-000248-zueoyesj 298 14 isoforms isoform NNS cord-000248-zueoyesj 298 15 of of IN cord-000248-zueoyesj 298 16 p63 p63 CD cord-000248-zueoyesj 298 17 , , , cord-000248-zueoyesj 298 18 which which WDT cord-000248-zueoyesj 298 19 is be VBZ cord-000248-zueoyesj 298 20 an an DT cord-000248-zueoyesj 298 21 important important JJ cord-000248-zueoyesj 298 22 discovery discovery NN cord-000248-zueoyesj 298 23 as as IN cord-000248-zueoyesj 298 24 ADA ADA NNP cord-000248-zueoyesj 298 25 has have VBZ cord-000248-zueoyesj 298 26 two two CD cord-000248-zueoyesj 298 27 TP53 TP53 NNP cord-000248-zueoyesj 298 28 binding bind VBG cord-000248-zueoyesj 298 29 sites site NNS cord-000248-zueoyesj 298 30 , , , cord-000248-zueoyesj 298 31 leading lead VBG cord-000248-zueoyesj 298 32 to to IN cord-000248-zueoyesj 298 33 a a DT cord-000248-zueoyesj 298 34 complex complex JJ cord-000248-zueoyesj 298 35 metabolic metabolic JJ cord-000248-zueoyesj 298 36 balance balance NN cord-000248-zueoyesj 298 37 due due IN cord-000248-zueoyesj 298 38 to to IN cord-000248-zueoyesj 298 39 the the DT cord-000248-zueoyesj 298 40 different different JJ cord-000248-zueoyesj 298 41 relationships relationship NNS cord-000248-zueoyesj 298 42 between between IN cord-000248-zueoyesj 298 43 this this DT cord-000248-zueoyesj 298 44 trio trio NN cord-000248-zueoyesj 298 45 and and CC cord-000248-zueoyesj 298 46 p21 p21 NN cord-000248-zueoyesj 298 47 yet yet RB cord-000248-zueoyesj 298 48 to to TO cord-000248-zueoyesj 298 49 be be VB cord-000248-zueoyesj 298 50 completely completely RB cord-000248-zueoyesj 298 51 elicitated elicitate VBN cord-000248-zueoyesj 298 52 [ [ -LRB- cord-000248-zueoyesj 298 53 120 120 CD cord-000248-zueoyesj 298 54 , , , cord-000248-zueoyesj 298 55 122 122 CD cord-000248-zueoyesj 298 56 ] ] -RRB- cord-000248-zueoyesj 298 57 . . . cord-000248-zueoyesj 299 1 Several several JJ cord-000248-zueoyesj 299 2 studies study NNS cord-000248-zueoyesj 299 3 indicate indicate VBP cord-000248-zueoyesj 299 4 elevation elevation NN cord-000248-zueoyesj 299 5 of of IN cord-000248-zueoyesj 299 6 adenosine adenosine NN cord-000248-zueoyesj 299 7 deaminase deaminase NNP cord-000248-zueoyesj 299 8 levels level NNS cord-000248-zueoyesj 299 9 in in IN cord-000248-zueoyesj 299 10 sera sera NNP cord-000248-zueoyesj 299 11 of of IN cord-000248-zueoyesj 299 12 breast breast NN cord-000248-zueoyesj 299 13 [ [ -LRB- cord-000248-zueoyesj 299 14 123 123 CD cord-000248-zueoyesj 299 15 ] ] -RRB- cord-000248-zueoyesj 299 16 , , , cord-000248-zueoyesj 299 17 head head NN cord-000248-zueoyesj 299 18 and and CC cord-000248-zueoyesj 299 19 neck neck NN cord-000248-zueoyesj 299 20 [ [ -LRB- cord-000248-zueoyesj 299 21 124 124 CD cord-000248-zueoyesj 299 22 ] ] -RRB- cord-000248-zueoyesj 299 23 , , , cord-000248-zueoyesj 299 24 colorectal colorectal JJ cord-000248-zueoyesj 299 25 [ [ -LRB- cord-000248-zueoyesj 299 26 125 125 CD cord-000248-zueoyesj 299 27 ] ] -RRB- cord-000248-zueoyesj 299 28 , , , cord-000248-zueoyesj 299 29 acute acute JJ cord-000248-zueoyesj 299 30 lymphoblastic lymphoblastic JJ cord-000248-zueoyesj 299 31 leukaemia leukaemia NN cord-000248-zueoyesj 299 32 [ [ -LRB- cord-000248-zueoyesj 299 33 126 126 CD cord-000248-zueoyesj 299 34 ] ] -RRB- cord-000248-zueoyesj 299 35 and and CC cord-000248-zueoyesj 299 36 laryngeal laryngeal NN cord-000248-zueoyesj 299 37 cancers cancer NNS cord-000248-zueoyesj 299 38 [ [ -LRB- cord-000248-zueoyesj 299 39 127 127 CD cord-000248-zueoyesj 299 40 ] ] -RRB- cord-000248-zueoyesj 299 41 . . . cord-000248-zueoyesj 300 1 We -PRON- PRP cord-000248-zueoyesj 300 2 observe observe VBP cord-000248-zueoyesj 300 3 a a DT cord-000248-zueoyesj 300 4 marked marked JJ cord-000248-zueoyesj 300 5 increase increase NN cord-000248-zueoyesj 300 6 of of IN cord-000248-zueoyesj 300 7 expression expression NN cord-000248-zueoyesj 300 8 of of IN cord-000248-zueoyesj 300 9 a a DT cord-000248-zueoyesj 300 10 probe probe NN cord-000248-zueoyesj 300 11 for for IN cord-000248-zueoyesj 300 12 ADA ADA NNP cord-000248-zueoyesj 300 13 with with IN cord-000248-zueoyesj 300 14 melanoma melanoma NN cord-000248-zueoyesj 300 15 progression progression NN cord-000248-zueoyesj 300 16 while while IN cord-000248-zueoyesj 300 17 at at IN cord-000248-zueoyesj 300 18 the the DT cord-000248-zueoyesj 300 19 same same JJ cord-000248-zueoyesj 300 20 time time NN cord-000248-zueoyesj 300 21 we -PRON- PRP cord-000248-zueoyesj 300 22 observe observe VBP cord-000248-zueoyesj 300 23 a a DT cord-000248-zueoyesj 300 24 loss loss NN cord-000248-zueoyesj 300 25 of of IN cord-000248-zueoyesj 300 26 expression expression NN cord-000248-zueoyesj 300 27 of of IN cord-000248-zueoyesj 300 28 a a DT cord-000248-zueoyesj 300 29 probe probe NN cord-000248-zueoyesj 300 30 corresponding correspond VBG cord-000248-zueoyesj 300 31 to to IN cord-000248-zueoyesj 300 32 DPP4 DPP4 NNP cord-000248-zueoyesj 300 33 / / SYM cord-000248-zueoyesj 300 34 CD26 CD26 NNP cord-000248-zueoyesj 300 35 ( ( -LRB- cord-000248-zueoyesj 300 36 Dipeptidylpeptidase Dipeptidylpeptidase NNP cord-000248-zueoyesj 300 37 4 4 CD cord-000248-zueoyesj 300 38 , , , cord-000248-zueoyesj 300 39 CD26 CD26 NNP cord-000248-zueoyesj 300 40 , , , cord-000248-zueoyesj 300 41 adenosine adenosine NN cord-000248-zueoyesj 300 42 deaminase deaminase NN cord-000248-zueoyesj 300 43 complexing complexe VBG cord-000248-zueoyesj 300 44 protein protein NN cord-000248-zueoyesj 300 45 2 2 CD cord-000248-zueoyesj 300 46 ) ) -RRB- cord-000248-zueoyesj 300 47 , , , cord-000248-zueoyesj 300 48 a a DT cord-000248-zueoyesj 300 49 membrane membrane NN cord-000248-zueoyesj 300 50 - - HYPH cord-000248-zueoyesj 300 51 bound bind VBN cord-000248-zueoyesj 300 52 , , , cord-000248-zueoyesj 300 53 proline proline NN cord-000248-zueoyesj 300 54 - - HYPH cord-000248-zueoyesj 300 55 specific specific JJ cord-000248-zueoyesj 300 56 serine serine NN cord-000248-zueoyesj 300 57 protease protease NN cord-000248-zueoyesj 300 58 [ [ -LRB- cord-000248-zueoyesj 300 59 128 128 CD cord-000248-zueoyesj 300 60 ] ] -RRB- cord-000248-zueoyesj 300 61 that that WDT cord-000248-zueoyesj 300 62 has have VBZ cord-000248-zueoyesj 300 63 been be VBN cord-000248-zueoyesj 300 64 attributed attribute VBN cord-000248-zueoyesj 300 65 tumor tumor NN cord-000248-zueoyesj 300 66 suppressor suppressor NN cord-000248-zueoyesj 300 67 functions function NNS cord-000248-zueoyesj 300 68 [ [ -LRB- cord-000248-zueoyesj 300 69 129 129 CD cord-000248-zueoyesj 300 70 ] ] -RRB- cord-000248-zueoyesj 300 71 . . . cord-000248-zueoyesj 301 1 It -PRON- PRP cord-000248-zueoyesj 301 2 has have VBZ cord-000248-zueoyesj 301 3 been be VBN cord-000248-zueoyesj 301 4 previously previously RB cord-000248-zueoyesj 301 5 reported report VBN cord-000248-zueoyesj 301 6 that that IN cord-000248-zueoyesj 301 7 loss loss NN cord-000248-zueoyesj 301 8 of of IN cord-000248-zueoyesj 301 9 DPP4 DPP4 NNP cord-000248-zueoyesj 301 10 immunostaining immunostaining NN cord-000248-zueoyesj 301 11 helps help VBZ cord-000248-zueoyesj 301 12 to to TO cord-000248-zueoyesj 301 13 discriminate discriminate VB cord-000248-zueoyesj 301 14 malignant malignant JJ cord-000248-zueoyesj 301 15 melanomas melanoma NNS cord-000248-zueoyesj 301 16 from from IN cord-000248-zueoyesj 301 17 deep deep JJ cord-000248-zueoyesj 301 18 penetrating penetrating JJ cord-000248-zueoyesj 301 19 nevi nevus NNS cord-000248-zueoyesj 301 20 , , , cord-000248-zueoyesj 301 21 a a DT cord-000248-zueoyesj 301 22 variant variant NN cord-000248-zueoyesj 301 23 of of IN cord-000248-zueoyesj 301 24 benign benign JJ cord-000248-zueoyesj 301 25 melanocytic melanocytic JJ cord-000248-zueoyesj 301 26 nevus nevus NN cord-000248-zueoyesj 301 27 [ [ -LRB- cord-000248-zueoyesj 301 28 130 130 CD cord-000248-zueoyesj 301 29 ] ] -RRB- cord-000248-zueoyesj 301 30 and and CC cord-000248-zueoyesj 301 31 early early JJ cord-000248-zueoyesj 301 32 reports report NNS cord-000248-zueoyesj 301 33 of of IN cord-000248-zueoyesj 301 34 their -PRON- PRP$ cord-000248-zueoyesj 301 35 absence absence NN cord-000248-zueoyesj 301 36 in in IN cord-000248-zueoyesj 301 37 metastatic metastatic JJ cord-000248-zueoyesj 301 38 melanomas melanoma NNS cord-000248-zueoyesj 301 39 exist exist VBP cord-000248-zueoyesj 301 40 [ [ -LRB- cord-000248-zueoyesj 301 41 131 131 CD cord-000248-zueoyesj 301 42 , , , cord-000248-zueoyesj 301 43 132 132 CD cord-000248-zueoyesj 301 44 ] ] -RRB- cord-000248-zueoyesj 301 45 . . . cord-000248-zueoyesj 302 1 As as IN cord-000248-zueoyesj 302 2 deep deep JJ cord-000248-zueoyesj 302 3 penetrating penetrate VBG cord-000248-zueoyesj 302 4 nevi nevus NNS cord-000248-zueoyesj 302 5 can can MD cord-000248-zueoyesj 302 6 mimic mimic VB cord-000248-zueoyesj 302 7 the the DT cord-000248-zueoyesj 302 8 vertical vertical JJ cord-000248-zueoyesj 302 9 growth growth NN cord-000248-zueoyesj 302 10 phase phase NN cord-000248-zueoyesj 302 11 of of IN cord-000248-zueoyesj 302 12 nodular nodular JJ cord-000248-zueoyesj 302 13 malignant malignant JJ cord-000248-zueoyesj 302 14 melanoma melanoma NN cord-000248-zueoyesj 302 15 , , , cord-000248-zueoyesj 302 16 and and CC cord-000248-zueoyesj 302 17 ADA ADA NNP cord-000248-zueoyesj 302 18 could could MD cord-000248-zueoyesj 302 19 potentially potentially RB cord-000248-zueoyesj 302 20 be be VB cord-000248-zueoyesj 302 21 downregulat downregulat JJ cord-000248-zueoyesj 302 22 - - : cord-000248-zueoyesj 302 23 ing e VBG cord-000248-zueoyesj 302 24 DPP4 DPP4 NNP cord-000248-zueoyesj 302 25 [ [ -LRB- cord-000248-zueoyesj 302 26 133 133 CD cord-000248-zueoyesj 302 27 , , , cord-000248-zueoyesj 302 28 134 134 CD cord-000248-zueoyesj 302 29 ] ] -RRB- cord-000248-zueoyesj 303 1 we -PRON- PRP cord-000248-zueoyesj 303 2 believe believe VBP cord-000248-zueoyesj 303 3 that that IN cord-000248-zueoyesj 303 4 the the DT cord-000248-zueoyesj 303 5 elicitation elicitation NN cord-000248-zueoyesj 303 6 of of IN cord-000248-zueoyesj 303 7 the the DT cord-000248-zueoyesj 303 8 complementary complementary JJ cord-000248-zueoyesj 303 9 role role NN cord-000248-zueoyesj 303 10 of of IN cord-000248-zueoyesj 303 11 these these DT cord-000248-zueoyesj 303 12 two two CD cord-000248-zueoyesj 303 13 biomarkers biomarker NNS cord-000248-zueoyesj 303 14 to to TO cord-000248-zueoyesj 303 15 distinguish distinguish VB cord-000248-zueoyesj 303 16 these these DT cord-000248-zueoyesj 303 17 two two CD cord-000248-zueoyesj 303 18 entities entity NNS cord-000248-zueoyesj 303 19 is be VBZ cord-000248-zueoyesj 303 20 necessary necessary JJ cord-000248-zueoyesj 303 21 and and CC cord-000248-zueoyesj 303 22 also also RB cord-000248-zueoyesj 303 23 warrants warrant VBZ cord-000248-zueoyesj 303 24 further further JJ cord-000248-zueoyesj 303 25 clinical clinical JJ cord-000248-zueoyesj 303 26 studies study NNS cord-000248-zueoyesj 303 27 . . . cord-000248-zueoyesj 304 1 PLK1 PLK1 NNP cord-000248-zueoyesj 304 2 ( ( -LRB- cord-000248-zueoyesj 304 3 Polo Polo NNP cord-000248-zueoyesj 304 4 - - HYPH cord-000248-zueoyesj 304 5 like like JJ cord-000248-zueoyesj 304 6 kinase kinase NN cord-000248-zueoyesj 304 7 1 1 CD cord-000248-zueoyesj 304 8 ( ( -LRB- cord-000248-zueoyesj 304 9 Drosophila Drosophila NNP cord-000248-zueoyesj 304 10 ) ) -RRB- cord-000248-zueoyesj 304 11 ) ) -RRB- cord-000248-zueoyesj 304 12 . . . cord-000248-zueoyesj 305 1 Another another DT cord-000248-zueoyesj 305 2 probe probe NN cord-000248-zueoyesj 305 3 for for IN cord-000248-zueoyesj 305 4 gene gene NN cord-000248-zueoyesj 305 5 that that WDT cord-000248-zueoyesj 305 6 ranks rank VBZ cord-000248-zueoyesj 305 7 high high RB cord-000248-zueoyesj 305 8 as as IN cord-000248-zueoyesj 305 9 a a DT cord-000248-zueoyesj 305 10 positive positive JJ cord-000248-zueoyesj 305 11 marker marker NN cord-000248-zueoyesj 305 12 of of IN cord-000248-zueoyesj 305 13 metastasis metastasis NN cord-000248-zueoyesj 305 14 is be VBZ cord-000248-zueoyesj 305 15 PLK1 PLK1 NNP cord-000248-zueoyesj 305 16 , , , cord-000248-zueoyesj 305 17 Polo Polo NNP cord-000248-zueoyesj 305 18 - - HYPH cord-000248-zueoyesj 305 19 like like JJ cord-000248-zueoyesj 305 20 kinase kinase NN cord-000248-zueoyesj 305 21 1 1 CD cord-000248-zueoyesj 305 22 , , , cord-000248-zueoyesj 305 23 Serine Serine NNP cord-000248-zueoyesj 305 24 / / SYM cord-000248-zueoyesj 305 25 Threonine Threonine NNP cord-000248-zueoyesj 305 26 protein protein NN cord-000248-zueoyesj 305 27 kinase kinase VBD cord-000248-zueoyesj 305 28 13 13 CD cord-000248-zueoyesj 305 29 ( ( -LRB- cord-000248-zueoyesj 305 30 AA629262 AA629262 NNP cord-000248-zueoyesj 305 31 ) ) -RRB- cord-000248-zueoyesj 305 32 . . . cord-000248-zueoyesj 306 1 PLK1 PLK1 NNP cord-000248-zueoyesj 306 2 is be VBZ cord-000248-zueoyesj 306 3 a a DT cord-000248-zueoyesj 306 4 centrosomal centrosomal JJ cord-000248-zueoyesj 306 5 kinase kinase NN cord-000248-zueoyesj 306 6 [ [ -LRB- cord-000248-zueoyesj 306 7 135 135 CD cord-000248-zueoyesj 306 8 ] ] -RRB- cord-000248-zueoyesj 306 9 which which WDT cord-000248-zueoyesj 306 10 is be VBZ cord-000248-zueoyesj 306 11 Figure Figure NNP cord-000248-zueoyesj 306 12 7 7 CD cord-000248-zueoyesj 306 13 . . . cord-000248-zueoyesj 307 1 Scatter scatter VB cord-000248-zueoyesj 307 2 plot plot NN cord-000248-zueoyesj 307 3 showing show VBG cord-000248-zueoyesj 307 4 the the DT cord-000248-zueoyesj 307 5 expression expression NN cord-000248-zueoyesj 307 6 of of IN cord-000248-zueoyesj 307 7 the the DT cord-000248-zueoyesj 307 8 probe probe NN cord-000248-zueoyesj 307 9 corresponding correspond VBG cord-000248-zueoyesj 307 10 to to IN cord-000248-zueoyesj 307 11 ADA ADA NNP cord-000248-zueoyesj 307 12 ( ( -LRB- cord-000248-zueoyesj 307 13 Adenosine adenosine NN cord-000248-zueoyesj 307 14 deaminase deaminase NNP cord-000248-zueoyesj 307 15 ) ) -RRB- cord-000248-zueoyesj 307 16 , , , cord-000248-zueoyesj 307 17 AA683578 AA683578 NNP cord-000248-zueoyesj 307 18 ( ( -LRB- cord-000248-zueoyesj 307 19 y y NN cord-000248-zueoyesj 307 20 - - HYPH cord-000248-zueoyesj 307 21 axis axis NN cord-000248-zueoyesj 307 22 ) ) -RRB- cord-000248-zueoyesj 308 1 and and CC cord-000248-zueoyesj 308 2 TP63 TP63 NNP cord-000248-zueoyesj 308 3 ( ( -LRB- cord-000248-zueoyesj 308 4 Tumor tumor NN cord-000248-zueoyesj 308 5 protein protein NN cord-000248-zueoyesj 308 6 p63 p63 CD cord-000248-zueoyesj 308 7 ) ) -RRB- cord-000248-zueoyesj 308 8 , , , cord-000248-zueoyesj 308 9 AA455929 AA455929 VBN cord-000248-zueoyesj 308 10 ( ( -LRB- cord-000248-zueoyesj 308 11 x x NN cord-000248-zueoyesj 308 12 - - NN cord-000248-zueoyesj 308 13 axis axis NN cord-000248-zueoyesj 308 14 ) ) -RRB- cord-000248-zueoyesj 308 15 . . . cord-000248-zueoyesj 309 1 All all PDT cord-000248-zueoyesj 309 2 the the DT cord-000248-zueoyesj 309 3 samples sample NNS cord-000248-zueoyesj 309 4 that that WDT cord-000248-zueoyesj 309 5 have have VBP cord-000248-zueoyesj 309 6 TP63 TP63 NNP cord-000248-zueoyesj 309 7 expression expression NN cord-000248-zueoyesj 309 8 are be VBP cord-000248-zueoyesj 309 9 normal normal JJ cord-000248-zueoyesj 309 10 or or CC cord-000248-zueoyesj 309 11 nevi nevus NNS cord-000248-zueoyesj 309 12 , , , cord-000248-zueoyesj 309 13 with with IN cord-000248-zueoyesj 309 14 two two CD cord-000248-zueoyesj 309 15 primary primary JJ cord-000248-zueoyesj 309 16 melanomas melanoma NNS cord-000248-zueoyesj 309 17 still still RB cord-000248-zueoyesj 309 18 preserving preserve VBG cord-000248-zueoyesj 309 19 TP63 TP63 NNP cord-000248-zueoyesj 309 20 expression expression NN cord-000248-zueoyesj 309 21 but but CC cord-000248-zueoyesj 309 22 with with IN cord-000248-zueoyesj 309 23 higher high JJR cord-000248-zueoyesj 309 24 ADA ADA NNP cord-000248-zueoyesj 309 25 . . . cord-000248-zueoyesj 310 1 The the DT cord-000248-zueoyesj 310 2 trend trend NN cord-000248-zueoyesj 310 3 reverses reverse VBZ cord-000248-zueoyesj 310 4 for for IN cord-000248-zueoyesj 310 5 the the DT cord-000248-zueoyesj 310 6 rest rest NN cord-000248-zueoyesj 310 7 of of IN cord-000248-zueoyesj 310 8 the the DT cord-000248-zueoyesj 310 9 primary primary JJ cord-000248-zueoyesj 310 10 melanoma melanoma NN cord-000248-zueoyesj 310 11 samples sample NNS cord-000248-zueoyesj 310 12 and and CC cord-000248-zueoyesj 310 13 the the DT cord-000248-zueoyesj 310 14 metastatic metastatic JJ cord-000248-zueoyesj 310 15 ones one NNS cord-000248-zueoyesj 310 16 , , , cord-000248-zueoyesj 310 17 which which WDT cord-000248-zueoyesj 310 18 all all DT cord-000248-zueoyesj 310 19 express express VBP cord-000248-zueoyesj 310 20 ADA ADA NNP cord-000248-zueoyesj 310 21 but but CC cord-000248-zueoyesj 310 22 not not RB cord-000248-zueoyesj 310 23 TP63 TP63 NNP cord-000248-zueoyesj 310 24 . . . cord-000248-zueoyesj 311 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 312 1 /journal.pone.0012262.g007 /journal.pone.0012262.g007 . cord-000248-zueoyesj 313 1 Analogously analogously RB cord-000248-zueoyesj 313 2 , , , cord-000248-zueoyesj 313 3 we -PRON- PRP cord-000248-zueoyesj 313 4 compute compute VBP cord-000248-zueoyesj 313 5 the the DT cord-000248-zueoyesj 313 6 Jensen Jensen NNP cord-000248-zueoyesj 313 7 - - HYPH cord-000248-zueoyesj 313 8 Shannon Shannon NNP cord-000248-zueoyesj 313 9 divergence divergence NN cord-000248-zueoyesj 313 10 of of IN cord-000248-zueoyesj 313 11 each each DT cord-000248-zueoyesj 313 12 sample sample NN cord-000248-zueoyesj 313 13 with with IN cord-000248-zueoyesj 313 14 the the DT cord-000248-zueoyesj 313 15 average average JJ cord-000248-zueoyesj 313 16 metastastic metastastic JJ cord-000248-zueoyesj 313 17 profile profile NN cord-000248-zueoyesj 313 18 and and CC cord-000248-zueoyesj 313 19 we -PRON- PRP cord-000248-zueoyesj 313 20 also also RB cord-000248-zueoyesj 313 21 compute compute VBP cord-000248-zueoyesj 313 22 the the DT cord-000248-zueoyesj 313 23 correlation correlation NN cord-000248-zueoyesj 313 24 of of IN cord-000248-zueoyesj 313 25 each each DT cord-000248-zueoyesj 313 26 probe probe NN cord-000248-zueoyesj 313 27 with with IN cord-000248-zueoyesj 313 28 this this DT cord-000248-zueoyesj 313 29 measure measure NN cord-000248-zueoyesj 313 30 ( ( -LRB- cord-000248-zueoyesj 313 31 y y NN cord-000248-zueoyesj 313 32 - - HYPH cord-000248-zueoyesj 313 33 axis axis NN cord-000248-zueoyesj 313 34 ) ) -RRB- cord-000248-zueoyesj 313 35 . . . cord-000248-zueoyesj 314 1 The the DT cord-000248-zueoyesj 314 2 position position NN cord-000248-zueoyesj 314 3 of of IN cord-000248-zueoyesj 314 4 one one CD cord-000248-zueoyesj 314 5 probe probe NN cord-000248-zueoyesj 314 6 corresponding correspond VBG cord-000248-zueoyesj 314 7 to to IN cord-000248-zueoyesj 314 8 the the DT cord-000248-zueoyesj 314 9 TP63 TP63 NNP cord-000248-zueoyesj 314 10 gene gene NN cord-000248-zueoyesj 314 11 ( ( -LRB- cord-000248-zueoyesj 314 12 Tumor tumor NN cord-000248-zueoyesj 314 13 protein protein NN cord-000248-zueoyesj 314 14 p63 p63 NN cord-000248-zueoyesj 314 15 , , , cord-000248-zueoyesj 314 16 keratinocyte keratinocyte NNP cord-000248-zueoyesj 314 17 transcription transcription NN cord-000248-zueoyesj 314 18 factor factor NN cord-000248-zueoyesj 314 19 KET KET NNP cord-000248-zueoyesj 314 20 ) ) -RRB- cord-000248-zueoyesj 314 21 , , , cord-000248-zueoyesj 314 22 AA455929 aa455929 NN cord-000248-zueoyesj 314 23 , , , cord-000248-zueoyesj 314 24 is be VBZ cord-000248-zueoyesj 314 25 highlighted highlight VBN cord-000248-zueoyesj 314 26 . . . cord-000248-zueoyesj 315 1 The the DT cord-000248-zueoyesj 315 2 expression expression NN cord-000248-zueoyesj 315 3 of of IN cord-000248-zueoyesj 315 4 this this DT cord-000248-zueoyesj 315 5 probe probe NN cord-000248-zueoyesj 315 6 has have VBZ cord-000248-zueoyesj 315 7 a a DT cord-000248-zueoyesj 315 8 relatively relatively RB cord-000248-zueoyesj 315 9 high high JJ cord-000248-zueoyesj 315 10 negative negative JJ cord-000248-zueoyesj 315 11 correlation correlation NN cord-000248-zueoyesj 315 12 with with IN cord-000248-zueoyesj 315 13 the the DT cord-000248-zueoyesj 315 14 Jensen Jensen NNP cord-000248-zueoyesj 315 15 - - HYPH cord-000248-zueoyesj 315 16 Shannon Shannon NNP cord-000248-zueoyesj 315 17 divergence divergence NN cord-000248-zueoyesj 315 18 of of IN cord-000248-zueoyesj 315 19 the the DT cord-000248-zueoyesj 315 20 normal normal JJ cord-000248-zueoyesj 315 21 skin skin NN cord-000248-zueoyesj 315 22 type type NN cord-000248-zueoyesj 315 23 ( ( -LRB- cord-000248-zueoyesj 315 24 JSM0-Spearman JSM0-Spearman NNP cord-000248-zueoyesj 315 25 = = SYM cord-000248-zueoyesj 315 26 20.63632 20.63632 CD cord-000248-zueoyesj 315 27 ) ) -RRB- cord-000248-zueoyesj 316 1 while while IN cord-000248-zueoyesj 316 2 at at IN cord-000248-zueoyesj 316 3 the the DT cord-000248-zueoyesj 316 4 same same JJ cord-000248-zueoyesj 316 5 time time NN cord-000248-zueoyesj 316 6 is be VBZ cord-000248-zueoyesj 316 7 has have VBZ cord-000248-zueoyesj 316 8 a a DT cord-000248-zueoyesj 316 9 positive positive JJ cord-000248-zueoyesj 316 10 correlation correlation NN cord-000248-zueoyesj 316 11 with with IN cord-000248-zueoyesj 316 12 the the DT cord-000248-zueoyesj 316 13 Jensen Jensen NNP cord-000248-zueoyesj 316 14 - - HYPH cord-000248-zueoyesj 316 15 Shannon Shannon NNP cord-000248-zueoyesj 316 16 divergence divergence NN cord-000248-zueoyesj 316 17 of of IN cord-000248-zueoyesj 316 18 the the DT cord-000248-zueoyesj 316 19 metastasis metastasis NN cord-000248-zueoyesj 316 20 profile profile NN cord-000248-zueoyesj 316 21 ( ( -LRB- cord-000248-zueoyesj 316 22 JSM5 JSM5 NNP cord-000248-zueoyesj 316 23 = = SYM cord-000248-zueoyesj 316 24 0.62138 0.62138 CD cord-000248-zueoyesj 316 25 ) ) -RRB- cord-000248-zueoyesj 316 26 . . . cord-000248-zueoyesj 317 1 The the DT cord-000248-zueoyesj 317 2 first first JJ cord-000248-zueoyesj 317 3 probe probe NN cord-000248-zueoyesj 317 4 that that WDT cord-000248-zueoyesj 317 5 presents present VBZ cord-000248-zueoyesj 317 6 an an DT cord-000248-zueoyesj 317 7 opposite opposite JJ cord-000248-zueoyesj 317 8 behaviour behaviour NN cord-000248-zueoyesj 317 9 is be VBZ cord-000248-zueoyesj 317 10 one one CD cord-000248-zueoyesj 317 11 for for IN cord-000248-zueoyesj 317 12 ADA ADA NNP cord-000248-zueoyesj 317 13 ( ( -LRB- cord-000248-zueoyesj 317 14 Adenosine adenosine NN cord-000248-zueoyesj 317 15 deaminase deaminase NNP cord-000248-zueoyesj 317 16 ) ) -RRB- cord-000248-zueoyesj 317 17 , , , cord-000248-zueoyesj 317 18 AA683578 aa683578 NN cord-000248-zueoyesj 317 19 . . . cord-000248-zueoyesj 318 1 Probes probe NNS cord-000248-zueoyesj 318 2 for for IN cord-000248-zueoyesj 318 3 SPP1 SPP1 NNS cord-000248-zueoyesj 318 4 ( ( -LRB- cord-000248-zueoyesj 318 5 Secreted secreted NN cord-000248-zueoyesj 318 6 phosphoprotein phosphoprotein NN cord-000248-zueoyesj 318 7 1 1 CD cord-000248-zueoyesj 318 8 or or CC cord-000248-zueoyesj 318 9 Osteopontin Osteopontin NNP cord-000248-zueoyesj 318 10 ) ) -RRB- cord-000248-zueoyesj 318 11 and and CC cord-000248-zueoyesj 318 12 PLK1 PLK1 NNP cord-000248-zueoyesj 318 13 ( ( -LRB- cord-000248-zueoyesj 318 14 Polo Polo NNP cord-000248-zueoyesj 318 15 - - HYPH cord-000248-zueoyesj 318 16 like like JJ cord-000248-zueoyesj 318 17 kinase kinase NN cord-000248-zueoyesj 318 18 1 1 CD cord-000248-zueoyesj 318 19 or or CC cord-000248-zueoyesj 318 20 Drosophila Drosophila NNP cord-000248-zueoyesj 318 21 ) ) -RRB- cord-000248-zueoyesj 318 22 are be VBP cord-000248-zueoyesj 318 23 also also RB cord-000248-zueoyesj 318 24 highlighted highlight VBN cord-000248-zueoyesj 318 25 . . . cord-000248-zueoyesj 319 1 While while IN cord-000248-zueoyesj 319 2 PLK1 PLK1 NNP cord-000248-zueoyesj 319 3 is be VBZ cord-000248-zueoyesj 319 4 currently currently RB cord-000248-zueoyesj 319 5 less less RBR cord-000248-zueoyesj 319 6 recognized recognize VBN cord-000248-zueoyesj 319 7 as as IN cord-000248-zueoyesj 319 8 a a DT cord-000248-zueoyesj 319 9 biomarker biomarker NN cord-000248-zueoyesj 319 10 in in IN cord-000248-zueoyesj 319 11 melanoma melanoma NN cord-000248-zueoyesj 319 12 research research NN cord-000248-zueoyesj 319 13 , , , cord-000248-zueoyesj 319 14 the the DT cord-000248-zueoyesj 319 15 importance importance NN cord-000248-zueoyesj 319 16 of of IN cord-000248-zueoyesj 319 17 SPP1 SPP1 NNS cord-000248-zueoyesj 319 18 in in IN cord-000248-zueoyesj 319 19 cutaneous cutaneous JJ cord-000248-zueoyesj 319 20 pathology pathology NN cord-000248-zueoyesj 319 21 [ [ -LRB- cord-000248-zueoyesj 319 22 315 315 CD cord-000248-zueoyesj 319 23 , , , cord-000248-zueoyesj 319 24 318 318 CD cord-000248-zueoyesj 319 25 , , , cord-000248-zueoyesj 319 26 320 320 CD cord-000248-zueoyesj 319 27 , , , cord-000248-zueoyesj 319 28 321 321 CD cord-000248-zueoyesj 319 29 ] ] -RRB- cord-000248-zueoyesj 319 30 and and CC cord-000248-zueoyesj 319 31 in in IN cord-000248-zueoyesj 319 32 particular particular JJ cord-000248-zueoyesj 319 33 in in IN cord-000248-zueoyesj 319 34 melanoma melanoma NN cord-000248-zueoyesj 319 35 [ [ -LRB- cord-000248-zueoyesj 319 36 208 208 CD cord-000248-zueoyesj 319 37 , , , cord-000248-zueoyesj 319 38 209 209 CD cord-000248-zueoyesj 319 39 , , , cord-000248-zueoyesj 319 40 210 210 CD cord-000248-zueoyesj 319 41 , , , cord-000248-zueoyesj 319 42 211 211 CD cord-000248-zueoyesj 319 43 , , , cord-000248-zueoyesj 319 44 212 212 CD cord-000248-zueoyesj 319 45 , , , cord-000248-zueoyesj 319 46 214 214 CD cord-000248-zueoyesj 319 47 , , , cord-000248-zueoyesj 319 48 215 215 CD cord-000248-zueoyesj 319 49 , , , cord-000248-zueoyesj 319 50 216 216 CD cord-000248-zueoyesj 319 51 , , , cord-000248-zueoyesj 319 52 217 217 CD cord-000248-zueoyesj 319 53 , , , cord-000248-zueoyesj 319 54 218 218 CD cord-000248-zueoyesj 319 55 , , , cord-000248-zueoyesj 319 56 219 219 CD cord-000248-zueoyesj 319 57 , , , cord-000248-zueoyesj 319 58 222 222 CD cord-000248-zueoyesj 319 59 , , , cord-000248-zueoyesj 319 60 226 226 CD cord-000248-zueoyesj 319 61 , , , cord-000248-zueoyesj 319 62 264 264 CD cord-000248-zueoyesj 319 63 , , , cord-000248-zueoyesj 319 64 314 314 CD cord-000248-zueoyesj 319 65 , , , cord-000248-zueoyesj 319 66 315 315 CD cord-000248-zueoyesj 319 67 , , , cord-000248-zueoyesj 319 68 316 316 CD cord-000248-zueoyesj 319 69 , , , cord-000248-zueoyesj 319 70 317 317 CD cord-000248-zueoyesj 319 71 , , , cord-000248-zueoyesj 319 72 319 319 CD cord-000248-zueoyesj 319 73 , , , cord-000248-zueoyesj 319 74 322 322 CD cord-000248-zueoyesj 319 75 , , , cord-000248-zueoyesj 319 76 323 323 CD cord-000248-zueoyesj 319 77 , , , cord-000248-zueoyesj 319 78 324 324 CD cord-000248-zueoyesj 319 79 , , , cord-000248-zueoyesj 319 80 325 325 CD cord-000248-zueoyesj 319 81 , , , cord-000248-zueoyesj 319 82 326 326 CD cord-000248-zueoyesj 319 83 , , , cord-000248-zueoyesj 319 84 327 327 CD cord-000248-zueoyesj 319 85 , , , cord-000248-zueoyesj 319 86 328 328 CD cord-000248-zueoyesj 319 87 , , , cord-000248-zueoyesj 319 88 804 804 CD cord-000248-zueoyesj 319 89 , , , cord-000248-zueoyesj 319 90 805 805 CD cord-000248-zueoyesj 319 91 , , , cord-000248-zueoyesj 319 92 806 806 CD cord-000248-zueoyesj 319 93 , , , cord-000248-zueoyesj 319 94 807 807 CD cord-000248-zueoyesj 319 95 , , , cord-000248-zueoyesj 319 96 808 808 CD cord-000248-zueoyesj 319 97 , , , cord-000248-zueoyesj 319 98 809 809 CD cord-000248-zueoyesj 319 99 ] ] -RRB- cord-000248-zueoyesj 319 100 is be VBZ cord-000248-zueoyesj 319 101 increasing increase VBG cord-000248-zueoyesj 319 102 . . . cord-000248-zueoyesj 320 1 Using use VBG cord-000248-zueoyesj 320 2 a a DT cord-000248-zueoyesj 320 3 5-biomarker 5-biomarker CD cord-000248-zueoyesj 320 4 panel panel NN cord-000248-zueoyesj 320 5 that that WDT cord-000248-zueoyesj 320 6 included include VBD cord-000248-zueoyesj 320 7 SPP1 SPP1 NNP cord-000248-zueoyesj 320 8 , , , cord-000248-zueoyesj 320 9 Kashani Kashani NNP cord-000248-zueoyesj 320 10 - - HYPH cord-000248-zueoyesj 320 11 Sabet Sabet NNP cord-000248-zueoyesj 320 12 et et NNP cord-000248-zueoyesj 320 13 al al NNP cord-000248-zueoyesj 320 14 . . . cord-000248-zueoyesj 321 1 used use VBN cord-000248-zueoyesj 321 2 tissue tissue NN cord-000248-zueoyesj 321 3 microarrays microarray NNS cord-000248-zueoyesj 321 4 on on IN cord-000248-zueoyesj 321 5 693 693 CD cord-000248-zueoyesj 321 6 melanocytic melanocytic JJ cord-000248-zueoyesj 321 7 neoplasms neoplasm NNS cord-000248-zueoyesj 321 8 to to TO cord-000248-zueoyesj 321 9 show show VB cord-000248-zueoyesj 321 10 that that IN cord-000248-zueoyesj 321 11 SPP1 SPP1 NNP cord-000248-zueoyesj 321 12 expression expression NN cord-000248-zueoyesj 321 13 collaborates collaborate VBZ cord-000248-zueoyesj 321 14 significantly significantly RB cord-000248-zueoyesj 321 15 improving improve VBG cord-000248-zueoyesj 321 16 the the DT cord-000248-zueoyesj 321 17 detection detection NN cord-000248-zueoyesj 321 18 of of IN cord-000248-zueoyesj 321 19 high high JJ cord-000248-zueoyesj 321 20 percentage percentage NN cord-000248-zueoyesj 321 21 of of IN cord-000248-zueoyesj 321 22 melanomas melanoma NNS cord-000248-zueoyesj 321 23 arising arise VBG cord-000248-zueoyesj 321 24 in in IN cord-000248-zueoyesj 321 25 a a DT cord-000248-zueoyesj 321 26 nevus nevus NN cord-000248-zueoyesj 321 27 , , , cord-000248-zueoyesj 321 28 Spitz Spitz NNP cord-000248-zueoyesj 321 29 nevi nevus NNS cord-000248-zueoyesj 321 30 , , , cord-000248-zueoyesj 321 31 dysplastic dysplastic JJ cord-000248-zueoyesj 321 32 nevi nevus NNS cord-000248-zueoyesj 321 33 and and CC cord-000248-zueoyesj 321 34 misdiagnosed misdiagnosed JJ cord-000248-zueoyesj 321 35 lesions lesion NNS cord-000248-zueoyesj 321 36 [ [ -LRB- cord-000248-zueoyesj 321 37 253 253 CD cord-000248-zueoyesj 321 38 ] ] -RRB- cord-000248-zueoyesj 321 39 . . . cord-000248-zueoyesj 322 1 Like like IN cord-000248-zueoyesj 322 2 in in IN cord-000248-zueoyesj 322 3 the the DT cord-000248-zueoyesj 322 4 case case NN cord-000248-zueoyesj 322 5 of of IN cord-000248-zueoyesj 322 6 prostate prostate NN cord-000248-zueoyesj 322 7 cancer cancer NN cord-000248-zueoyesj 322 8 ( ( -LRB- cord-000248-zueoyesj 322 9 Figure Figure NNP cord-000248-zueoyesj 322 10 3 3 CD cord-000248-zueoyesj 322 11 , , , cord-000248-zueoyesj 322 12 in in IN cord-000248-zueoyesj 322 13 which which WDT cord-000248-zueoyesj 322 14 KLK3 KLK3 NNP cord-000248-zueoyesj 322 15 / / SYM cord-000248-zueoyesj 322 16 PSA PSA NNP cord-000248-zueoyesj 322 17 -Prostate -Prostate : cord-000248-zueoyesj 322 18 Specific specific JJ cord-000248-zueoyesj 322 19 Antigen Antigen NNP cord-000248-zueoyesj 322 20 was be VBD cord-000248-zueoyesj 322 21 highlighted highlight VBN cord-000248-zueoyesj 322 22 ) ) -RRB- cord-000248-zueoyesj 322 23 , , , cord-000248-zueoyesj 322 24 our -PRON- PRP$ cord-000248-zueoyesj 322 25 method method NN cord-000248-zueoyesj 322 26 allows allow VBZ cord-000248-zueoyesj 322 27 the the DT cord-000248-zueoyesj 322 28 detection detection NN cord-000248-zueoyesj 322 29 of of IN cord-000248-zueoyesj 322 30 important important JJ cord-000248-zueoyesj 322 31 biomarkers biomarker NNS cord-000248-zueoyesj 322 32 with with IN cord-000248-zueoyesj 322 33 a a DT cord-000248-zueoyesj 322 34 high high JJ cord-000248-zueoyesj 322 35 degree degree NN cord-000248-zueoyesj 322 36 of of IN cord-000248-zueoyesj 322 37 concordance concordance NN cord-000248-zueoyesj 322 38 with with IN cord-000248-zueoyesj 322 39 current current JJ cord-000248-zueoyesj 322 40 biological biological JJ cord-000248-zueoyesj 322 41 understanding understanding NN cord-000248-zueoyesj 322 42 of of IN cord-000248-zueoyesj 322 43 metastatic metastatic JJ cord-000248-zueoyesj 322 44 processes process NNS cord-000248-zueoyesj 322 45 . . . cord-000248-zueoyesj 323 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 323 2 / / SYM cord-000248-zueoyesj 323 3 journal.pone.0012262.g006 journal.pone.0012262.g006 NNP cord-000248-zueoyesj 323 4 regarded regard VBD cord-000248-zueoyesj 323 5 as as IN cord-000248-zueoyesj 323 6 being be VBG cord-000248-zueoyesj 323 7 linked link VBN cord-000248-zueoyesj 323 8 to to IN cord-000248-zueoyesj 323 9 centrosome centrosome VB cord-000248-zueoyesj 323 10 maturation maturation NN cord-000248-zueoyesj 323 11 and and CC cord-000248-zueoyesj 323 12 spindle spindle NN cord-000248-zueoyesj 323 13 assembly assembly NN cord-000248-zueoyesj 323 14 [ [ -LRB- cord-000248-zueoyesj 323 15 135 135 CD cord-000248-zueoyesj 323 16 ] ] -RRB- cord-000248-zueoyesj 323 17 . . . cord-000248-zueoyesj 324 1 PLK1 plk1 JJ cord-000248-zueoyesj 324 2 expression expression NN cord-000248-zueoyesj 324 3 has have VBZ cord-000248-zueoyesj 324 4 also also RB cord-000248-zueoyesj 324 5 been be VBN cord-000248-zueoyesj 324 6 singled single VBN cord-000248-zueoyesj 324 7 out out RP cord-000248-zueoyesj 324 8 as as IN cord-000248-zueoyesj 324 9 a a DT cord-000248-zueoyesj 324 10 biomarker biomarker NN cord-000248-zueoyesj 324 11 of of IN cord-000248-zueoyesj 324 12 a a DT cord-000248-zueoyesj 324 13 ' ' '' cord-000248-zueoyesj 324 14 ' ' '' cord-000248-zueoyesj 324 15 death death NN cord-000248-zueoyesj 324 16 - - HYPH cord-000248-zueoyesj 324 17 from from IN cord-000248-zueoyesj 324 18 - - HYPH cord-000248-zueoyesj 324 19 cancer cancer NN cord-000248-zueoyesj 324 20 ' ' '' cord-000248-zueoyesj 324 21 ' ' '' cord-000248-zueoyesj 324 22 signature signature NN cord-000248-zueoyesj 324 23 , , , cord-000248-zueoyesj 324 24 sharing share VBG cord-000248-zueoyesj 324 25 with with IN cord-000248-zueoyesj 324 26 others other NNS cord-000248-zueoyesj 324 27 the the DT cord-000248-zueoyesj 324 28 function function NN cord-000248-zueoyesj 324 29 of of IN cord-000248-zueoyesj 324 30 being be VBG cord-000248-zueoyesj 324 31 an an DT cord-000248-zueoyesj 324 32 activator activator NN cord-000248-zueoyesj 324 33 of of IN cord-000248-zueoyesj 324 34 mitotic mitotic JJ cord-000248-zueoyesj 324 35 spindle spindle NN cord-000248-zueoyesj 324 36 check check NN cord-000248-zueoyesj 324 37 point point NN cord-000248-zueoyesj 324 38 proteins protein NNS cord-000248-zueoyesj 324 39 . . . cord-000248-zueoyesj 325 1 With with IN cord-000248-zueoyesj 325 2 other other JJ cord-000248-zueoyesj 325 3 proteins protein NNS cord-000248-zueoyesj 325 4 it -PRON- PRP cord-000248-zueoyesj 325 5 would would MD cord-000248-zueoyesj 325 6 has have VBZ cord-000248-zueoyesj 325 7 a a DT cord-000248-zueoyesj 325 8 stem stem NN cord-000248-zueoyesj 325 9 cell cell NN cord-000248-zueoyesj 325 10 - - HYPH cord-000248-zueoyesj 325 11 like like JJ cord-000248-zueoyesj 325 12 expression expression NN cord-000248-zueoyesj 325 13 profile profile NN cord-000248-zueoyesj 325 14 phenotypically phenotypically RB cord-000248-zueoyesj 325 15 characterized characterize VBN cord-000248-zueoyesj 325 16 by by IN cord-000248-zueoyesj 325 17 enabling enable VBG cord-000248-zueoyesj 325 18 metastasis metastasis NN cord-000248-zueoyesj 325 19 with with IN cord-000248-zueoyesj 325 20 anoikis anoikis NN cord-000248-zueoyesj 325 21 resistance resistance NN cord-000248-zueoyesj 325 22 and and CC cord-000248-zueoyesj 325 23 disregulated disregulated JJ cord-000248-zueoyesj 325 24 cell cell NN cord-000248-zueoyesj 325 25 - - HYPH cord-000248-zueoyesj 325 26 cycle cycle NN cord-000248-zueoyesj 325 27 control control NN cord-000248-zueoyesj 325 28 [ [ -LRB- cord-000248-zueoyesj 325 29 136 136 CD cord-000248-zueoyesj 325 30 ] ] -RRB- cord-000248-zueoyesj 325 31 . . . cord-000248-zueoyesj 326 1 PLK1 plk1 JJ cord-000248-zueoyesj 326 2 inhibition inhibition NN cord-000248-zueoyesj 326 3 could could MD cord-000248-zueoyesj 326 4 be be VB cord-000248-zueoyesj 326 5 a a DT cord-000248-zueoyesj 326 6 common common JJ cord-000248-zueoyesj 326 7 target target NN cord-000248-zueoyesj 326 8 for for IN cord-000248-zueoyesj 326 9 gastric gastric JJ cord-000248-zueoyesj 326 10 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 326 11 [ [ -LRB- cord-000248-zueoyesj 326 12 137 137 CD cord-000248-zueoyesj 326 13 ] ] -RRB- cord-000248-zueoyesj 326 14 , , , cord-000248-zueoyesj 326 15 bladder bladder NN cord-000248-zueoyesj 326 16 cancer cancer NN cord-000248-zueoyesj 326 17 [ [ -LRB- cord-000248-zueoyesj 326 18 138 138 CD cord-000248-zueoyesj 326 19 ] ] -RRB- cord-000248-zueoyesj 326 20 , , , cord-000248-zueoyesj 326 21 colon colon NN cord-000248-zueoyesj 326 22 cancer cancer NN cord-000248-zueoyesj 326 23 [ [ -LRB- cord-000248-zueoyesj 326 24 139 139 CD cord-000248-zueoyesj 326 25 , , , cord-000248-zueoyesj 326 26 140 140 CD cord-000248-zueoyesj 326 27 ] ] -RRB- cord-000248-zueoyesj 326 28 , , , cord-000248-zueoyesj 326 29 hepatocellular hepatocellular JJ cord-000248-zueoyesj 326 30 carcinoma carcinoma NN cord-000248-zueoyesj 326 31 [ [ -LRB- cord-000248-zueoyesj 326 32 141 141 CD cord-000248-zueoyesj 326 33 ] ] -RRB- cord-000248-zueoyesj 326 34 , , , cord-000248-zueoyesj 326 35 medullary medullary JJ cord-000248-zueoyesj 326 36 thyroid thyroid NN cord-000248-zueoyesj 326 37 carcinoma carcinoma NN cord-000248-zueoyesj 326 38 [ [ -LRB- cord-000248-zueoyesj 326 39 142 142 CD cord-000248-zueoyesj 326 40 ] ] -RRB- cord-000248-zueoyesj 326 41 , , , cord-000248-zueoyesj 326 42 esophageal esophageal JJ cord-000248-zueoyesj 326 43 cancer cancer NN cord-000248-zueoyesj 326 44 [ [ -LRB- cord-000248-zueoyesj 326 45 143 143 CD cord-000248-zueoyesj 326 46 ] ] -RRB- cord-000248-zueoyesj 326 47 , , , cord-000248-zueoyesj 326 48 pancreatic pancreatic JJ cord-000248-zueoyesj 326 49 cancer cancer NN cord-000248-zueoyesj 326 50 [ [ -LRB- cord-000248-zueoyesj 326 51 144 144 CD cord-000248-zueoyesj 326 52 ] ] -RRB- cord-000248-zueoyesj 327 1 and and CC cord-000248-zueoyesj 327 2 in in IN cord-000248-zueoyesj 327 3 some some DT cord-000248-zueoyesj 327 4 types type NNS cord-000248-zueoyesj 327 5 of of IN cord-000248-zueoyesj 327 6 non non JJ cord-000248-zueoyesj 327 7 - - JJ cord-000248-zueoyesj 327 8 Hodgkin Hodgkin NNP cord-000248-zueoyesj 327 9 lymphomas lymphoma NNS cord-000248-zueoyesj 327 10 [ [ -LRB- cord-000248-zueoyesj 327 11 145 145 CD cord-000248-zueoyesj 327 12 ] ] -RRB- cord-000248-zueoyesj 327 13 and and CC cord-000248-zueoyesj 327 14 breast breast NN cord-000248-zueoyesj 327 15 cancer cancer NN cord-000248-zueoyesj 327 16 [ [ -LRB- cord-000248-zueoyesj 327 17 146 146 CD cord-000248-zueoyesj 327 18 ] ] -RRB- cord-000248-zueoyesj 327 19 . . . cord-000248-zueoyesj 328 1 PLK1 PLK1 NNP cord-000248-zueoyesj 328 2 's 's POS cord-000248-zueoyesj 328 3 Spearman Spearman NNP cord-000248-zueoyesj 328 4 correlation correlation NN cord-000248-zueoyesj 328 5 with with IN cord-000248-zueoyesj 328 6 the the DT cord-000248-zueoyesj 328 7 values value NNS cord-000248-zueoyesj 328 8 of of IN cord-000248-zueoyesj 328 9 the the DT cord-000248-zueoyesj 328 10 Jensen Jensen NNP cord-000248-zueoyesj 328 11 - - HYPH cord-000248-zueoyesj 328 12 Shannon Shannon NNP cord-000248-zueoyesj 328 13 divergence divergence NN cord-000248-zueoyesj 328 14 of of IN cord-000248-zueoyesj 328 15 samples sample NNS cord-000248-zueoyesj 328 16 with with IN cord-000248-zueoyesj 328 17 the the DT cord-000248-zueoyesj 328 18 normal normal JJ cord-000248-zueoyesj 328 19 skin skin NN cord-000248-zueoyesj 328 20 profile profile NN cord-000248-zueoyesj 328 21 is be VBZ cord-000248-zueoyesj 328 22 relatively relatively RB cord-000248-zueoyesj 328 23 high high JJ cord-000248-zueoyesj 328 24 ( ( -LRB- cord-000248-zueoyesj 328 25 0.5863 0.5863 CD cord-000248-zueoyesj 328 26 ) ) -RRB- cord-000248-zueoyesj 328 27 . . . cord-000248-zueoyesj 329 1 PLK1 PLK1 NNP cord-000248-zueoyesj 329 2 also also RB cord-000248-zueoyesj 329 3 has have VBZ cord-000248-zueoyesj 329 4 a a DT cord-000248-zueoyesj 329 5 high high JJ cord-000248-zueoyesj 329 6 value value NN cord-000248-zueoyesj 329 7 of of IN cord-000248-zueoyesj 329 8 ( ( -LRB- cord-000248-zueoyesj 329 9 negative negative JJ cord-000248-zueoyesj 329 10 ) ) -RRB- cord-000248-zueoyesj 330 1 Spearman spearman NN cord-000248-zueoyesj 330 2 correlation correlation NN cord-000248-zueoyesj 330 3 with with IN cord-000248-zueoyesj 330 4 the the DT cord-000248-zueoyesj 330 5 values value NNS cord-000248-zueoyesj 330 6 of of IN cord-000248-zueoyesj 330 7 the the DT cord-000248-zueoyesj 330 8 Jensen Jensen NNP cord-000248-zueoyesj 330 9 - - HYPH cord-000248-zueoyesj 330 10 Shannon Shannon NNP cord-000248-zueoyesj 330 11 divergence divergence NN cord-000248-zueoyesj 330 12 of of IN cord-000248-zueoyesj 330 13 samples sample NNS cord-000248-zueoyesj 330 14 with with IN cord-000248-zueoyesj 330 15 the the DT cord-000248-zueoyesj 330 16 average average JJ cord-000248-zueoyesj 330 17 metastatic metastatic JJ cord-000248-zueoyesj 330 18 profile profile NN cord-000248-zueoyesj 330 19 ( ( -LRB- cord-000248-zueoyesj 330 20 20.44571 20.44571 CD cord-000248-zueoyesj 331 1 In in IN cord-000248-zueoyesj 331 2 the the DT cord-000248-zueoyesj 331 3 comparison comparison NN cord-000248-zueoyesj 331 4 , , , cord-000248-zueoyesj 331 5 it -PRON- PRP cord-000248-zueoyesj 331 6 was be VBD cord-000248-zueoyesj 331 7 found find VBN cord-000248-zueoyesj 331 8 that that IN cord-000248-zueoyesj 331 9 metastatic metastatic JJ cord-000248-zueoyesj 331 10 malignant malignant JJ cord-000248-zueoyesj 331 11 melanomas melanoma NNS cord-000248-zueoyesj 331 12 with with IN cord-000248-zueoyesj 331 13 expressed express VBN cord-000248-zueoyesj 331 14 PLK1 PLK1 NNP cord-000248-zueoyesj 331 15 at at IN cord-000248-zueoyesj 331 16 markedly markedly RB cord-000248-zueoyesj 331 17 elevated elevate VBN cord-000248-zueoyesj 331 18 levels level NNS cord-000248-zueoyesj 331 19 ( ( -LRB- cord-000248-zueoyesj 331 20 median median NN cord-000248-zueoyesj 331 21 , , , cord-000248-zueoyesj 331 22 60.00 60.00 CD cord-000248-zueoyesj 331 23 % % NN cord-000248-zueoyesj 331 24 vs. vs. IN cord-000248-zueoyesj 331 25 37.98 37.98 CD cord-000248-zueoyesj 331 26 % % NN cord-000248-zueoyesj 331 27 ; ; : cord-000248-zueoyesj 331 28 p p NN cord-000248-zueoyesj 331 29 - - HYPH cord-000248-zueoyesj 331 30 value,0.000053 value,0.000053 NNP cord-000248-zueoyesj 331 31 ) ) -RRB- cord-000248-zueoyesj 331 32 , , , cord-000248-zueoyesj 331 33 concluding conclude VBG cord-000248-zueoyesj 331 34 that that IN cord-000248-zueoyesj 331 35 PLK1 PLK1 NNP cord-000248-zueoyesj 331 36 is be VBZ cord-000248-zueoyesj 331 37 a a DT cord-000248-zueoyesj 331 38 reliable reliable JJ cord-000248-zueoyesj 331 39 biomarker biomarker NN cord-000248-zueoyesj 331 40 for for IN cord-000248-zueoyesj 331 41 patients patient NNS cord-000248-zueoyesj 331 42 at at IN cord-000248-zueoyesj 331 43 high high JJ cord-000248-zueoyesj 331 44 risk risk NN cord-000248-zueoyesj 331 45 of of IN cord-000248-zueoyesj 331 46 metastases metastasis NNS cord-000248-zueoyesj 331 47 , , , cord-000248-zueoyesj 331 48 even even RB cord-000248-zueoyesj 331 49 when when WRB cord-000248-zueoyesj 331 50 the the DT cord-000248-zueoyesj 331 51 most most RBS cord-000248-zueoyesj 331 52 important important JJ cord-000248-zueoyesj 331 53 prognostic prognostic JJ cord-000248-zueoyesj 331 54 clinical clinical JJ cord-000248-zueoyesj 331 55 factor factor NN cord-000248-zueoyesj 331 56 ( ( -LRB- cord-000248-zueoyesj 331 57 Breslow Breslow NNP cord-000248-zueoyesj 331 58 's 's POS cord-000248-zueoyesj 331 59 maximum maximum JJ cord-000248-zueoyesj 331 60 thickness thickness NN cord-000248-zueoyesj 331 61 of of IN cord-000248-zueoyesj 331 62 the the DT cord-000248-zueoyesj 331 63 primary primary JJ cord-000248-zueoyesj 331 64 malignant malignant JJ cord-000248-zueoyesj 331 65 melanoma melanoma NN cord-000248-zueoyesj 331 66 ) ) -RRB- cord-000248-zueoyesj 331 67 indicates indicate VBZ cord-000248-zueoyesj 331 68 the the DT cord-000248-zueoyesj 331 69 contrary contrary JJ cord-000248-zueoyesj 331 70 [ [ -LRB- cord-000248-zueoyesj 331 71 147 147 CD cord-000248-zueoyesj 331 72 ] ] -RRB- cord-000248-zueoyesj 331 73 . . . cord-000248-zueoyesj 332 1 We -PRON- PRP cord-000248-zueoyesj 332 2 consider consider VBP cord-000248-zueoyesj 332 3 this this DT cord-000248-zueoyesj 332 4 an an DT cord-000248-zueoyesj 332 5 important important JJ cord-000248-zueoyesj 332 6 finding finding NN cord-000248-zueoyesj 332 7 as as IN cord-000248-zueoyesj 332 8 PLK1 PLK1 NNP cord-000248-zueoyesj 332 9 silencing silencing NN cord-000248-zueoyesj 332 10 is be VBZ cord-000248-zueoyesj 332 11 already already RB cord-000248-zueoyesj 332 12 part part NN cord-000248-zueoyesj 332 13 of of IN cord-000248-zueoyesj 332 14 an an DT cord-000248-zueoyesj 332 15 integrated integrated JJ cord-000248-zueoyesj 332 16 oncolytic oncolytic JJ cord-000248-zueoyesj 332 17 adenovirus adenovirus NN cord-000248-zueoyesj 332 18 approach approach NN cord-000248-zueoyesj 332 19 currently currently RB cord-000248-zueoyesj 332 20 being be VBG cord-000248-zueoyesj 332 21 studied study VBN cord-000248-zueoyesj 332 22 in in IN cord-000248-zueoyesj 332 23 mice mice NN cord-000248-zueoyesj 332 24 models model NNS cord-000248-zueoyesj 332 25 of of IN cord-000248-zueoyesj 332 26 orthotopic orthotopic JJ cord-000248-zueoyesj 332 27 gastric gastric JJ cord-000248-zueoyesj 332 28 carcinoma carcinoma NN cord-000248-zueoyesj 332 29 [ [ -LRB- cord-000248-zueoyesj 332 30 148 148 CD cord-000248-zueoyesj 332 31 ] ] -RRB- cord-000248-zueoyesj 332 32 and and CC cord-000248-zueoyesj 332 33 has have VBZ cord-000248-zueoyesj 332 34 promise promise NN cord-000248-zueoyesj 332 35 due due IN cord-000248-zueoyesj 332 36 to to IN cord-000248-zueoyesj 332 37 the the DT cord-000248-zueoyesj 332 38 lack lack NN cord-000248-zueoyesj 332 39 of of IN cord-000248-zueoyesj 332 40 a a DT cord-000248-zueoyesj 332 41 reported report VBN cord-000248-zueoyesj 332 42 measurable measurable JJ cord-000248-zueoyesj 332 43 immune immune JJ cord-000248-zueoyesj 332 44 response response NN cord-000248-zueoyesj 332 45 of of IN cord-000248-zueoyesj 332 46 siRNA siRNA NNP cord-000248-zueoyesj 332 47 - - HYPH cord-000248-zueoyesj 332 48 based base VBN cord-000248-zueoyesj 332 49 therapeutics therapeutic NNS cord-000248-zueoyesj 332 50 [ [ -LRB- cord-000248-zueoyesj 332 51 149 149 CD cord-000248-zueoyesj 332 52 ] ] -RRB- cord-000248-zueoyesj 332 53 . . . cord-000248-zueoyesj 333 1 Another another DT cord-000248-zueoyesj 333 2 positive positive JJ cord-000248-zueoyesj 333 3 note note NN cord-000248-zueoyesj 333 4 is be VBZ cord-000248-zueoyesj 333 5 the the DT cord-000248-zueoyesj 333 6 less less JJR cord-000248-zueoyesj 333 7 sensitivity sensitivity NN cord-000248-zueoyesj 333 8 to to IN cord-000248-zueoyesj 333 9 PLK1 plk1 JJ cord-000248-zueoyesj 333 10 depletion depletion NN cord-000248-zueoyesj 333 11 of of IN cord-000248-zueoyesj 333 12 cells cell NNS cord-000248-zueoyesj 333 13 with with IN cord-000248-zueoyesj 333 14 a a DT cord-000248-zueoyesj 333 15 functional functional JJ cord-000248-zueoyesj 333 16 p53 p53 NN cord-000248-zueoyesj 333 17 [ [ -LRB- cord-000248-zueoyesj 333 18 150 150 CD cord-000248-zueoyesj 333 19 , , , cord-000248-zueoyesj 333 20 151 151 CD cord-000248-zueoyesj 333 21 ] ] -RRB- cord-000248-zueoyesj 333 22 , , , cord-000248-zueoyesj 333 23 and and CC cord-000248-zueoyesj 333 24 can can MD cord-000248-zueoyesj 333 25 help help VB cord-000248-zueoyesj 333 26 to to TO cord-000248-zueoyesj 333 27 sensitize sensitize VB cord-000248-zueoyesj 333 28 cells cell NNS cord-000248-zueoyesj 333 29 to to IN cord-000248-zueoyesj 333 30 chemotherapy chemotherapy NN cord-000248-zueoyesj 333 31 ( ( -LRB- cord-000248-zueoyesj 333 32 as as IN cord-000248-zueoyesj 333 33 observed observe VBN cord-000248-zueoyesj 333 34 in in IN cord-000248-zueoyesj 333 35 lung lung NN cord-000248-zueoyesj 333 36 cancer cancer NN cord-000248-zueoyesj 333 37 [ [ -LRB- cord-000248-zueoyesj 333 38 152 152 CD cord-000248-zueoyesj 333 39 ] ] -RRB- cord-000248-zueoyesj 333 40 ) ) -RRB- cord-000248-zueoyesj 333 41 . . . cord-000248-zueoyesj 334 1 This this DT cord-000248-zueoyesj 334 2 constraint constraint NN cord-000248-zueoyesj 334 3 of of IN cord-000248-zueoyesj 334 4 aneuploid aneuploid JJ cord-000248-zueoyesj 334 5 cancer cancer NN cord-000248-zueoyesj 334 6 cells cell NNS cord-000248-zueoyesj 334 7 to to IN cord-000248-zueoyesj 334 8 PLK1 plk1 JJ cord-000248-zueoyesj 334 9 expression expression NN cord-000248-zueoyesj 334 10 , , , cord-000248-zueoyesj 334 11 particularly particularly RB cord-000248-zueoyesj 334 12 in in IN cord-000248-zueoyesj 334 13 cells cell NNS cord-000248-zueoyesj 334 14 with with IN cord-000248-zueoyesj 334 15 inactivated inactivate VBN cord-000248-zueoyesj 334 16 p53 p53 NN cord-000248-zueoyesj 334 17 [ [ -LRB- cord-000248-zueoyesj 334 18 153 153 CD cord-000248-zueoyesj 334 19 ] ] -RRB- cord-000248-zueoyesj 334 20 , , , cord-000248-zueoyesj 334 21 could could MD cord-000248-zueoyesj 334 22 be be VB cord-000248-zueoyesj 334 23 exploited exploit VBN cord-000248-zueoyesj 334 24 by by IN cord-000248-zueoyesj 334 25 lentivirus lentivirus NN cord-000248-zueoyesj 334 26 - - HYPH cord-000248-zueoyesj 334 27 based base VBN cord-000248-zueoyesj 334 28 RNA RNA NNP cord-000248-zueoyesj 334 29 interference interference NN cord-000248-zueoyesj 334 30 [ [ -LRB- cord-000248-zueoyesj 334 31 154 154 CD cord-000248-zueoyesj 334 32 ] ] -RRB- cord-000248-zueoyesj 334 33 . . . cord-000248-zueoyesj 335 1 Correlation correlation NN cord-000248-zueoyesj 335 2 analysis analysis NN cord-000248-zueoyesj 335 3 with with IN cord-000248-zueoyesj 335 4 Jensen Jensen NNP cord-000248-zueoyesj 335 5 - - HYPH cord-000248-zueoyesj 335 6 Shannon Shannon NNP cord-000248-zueoyesj 335 7 divergences divergence NNS cord-000248-zueoyesj 335 8 reveals reveal VBZ cord-000248-zueoyesj 335 9 biomarkers biomarker NNS cord-000248-zueoyesj 335 10 for for IN cord-000248-zueoyesj 335 11 loss loss NN cord-000248-zueoyesj 335 12 of of IN cord-000248-zueoyesj 335 13 cell cell NN cord-000248-zueoyesj 335 14 adhesion adhesion NN cord-000248-zueoyesj 335 15 , , , cord-000248-zueoyesj 335 16 cell cell NN cord-000248-zueoyesj 335 17 - - HYPH cord-000248-zueoyesj 335 18 cell cell NN cord-000248-zueoyesj 335 19 communication communication NN cord-000248-zueoyesj 335 20 , , , cord-000248-zueoyesj 335 21 impairment impairment NN cord-000248-zueoyesj 335 22 of of IN cord-000248-zueoyesj 335 23 tight tight JJ cord-000248-zueoyesj 335 24 junction junction NN cord-000248-zueoyesj 335 25 mechanisms mechanism NNS cord-000248-zueoyesj 335 26 and and CC cord-000248-zueoyesj 335 27 dysregulation dysregulation NN cord-000248-zueoyesj 335 28 of of IN cord-000248-zueoyesj 335 29 epithelial epithelial JJ cord-000248-zueoyesj 335 30 cell cell NN cord-000248-zueoyesj 335 31 polarity polarity NN cord-000248-zueoyesj 335 32 . . . cord-000248-zueoyesj 336 1 As as IN cord-000248-zueoyesj 336 2 discussed discuss VBN cord-000248-zueoyesj 336 3 before before RB cord-000248-zueoyesj 336 4 , , , cord-000248-zueoyesj 336 5 the the DT cord-000248-zueoyesj 336 6 probe probe NN cord-000248-zueoyesj 336 7 for for IN cord-000248-zueoyesj 336 8 ADA ADA NNP cord-000248-zueoyesj 336 9 ( ( -LRB- cord-000248-zueoyesj 336 10 Adenosine adenosine NN cord-000248-zueoyesj 336 11 deaminase deaminase NNP cord-000248-zueoyesj 336 12 ) ) -RRB- cord-000248-zueoyesj 336 13 is be VBZ cord-000248-zueoyesj 336 14 the the DT cord-000248-zueoyesj 336 15 first first JJ cord-000248-zueoyesj 336 16 that that WDT cord-000248-zueoyesj 336 17 has have VBZ cord-000248-zueoyesj 336 18 a a DT cord-000248-zueoyesj 336 19 different different JJ cord-000248-zueoyesj 336 20 trend trend NN cord-000248-zueoyesj 336 21 . . . cord-000248-zueoyesj 337 1 Since since IN cord-000248-zueoyesj 337 2 we -PRON- PRP cord-000248-zueoyesj 337 3 put put VBP cord-000248-zueoyesj 337 4 all all DT cord-000248-zueoyesj 337 5 metastasis metastasis NN cord-000248-zueoyesj 337 6 samples sample NNS cord-000248-zueoyesj 337 7 together together RB cord-000248-zueoyesj 337 8 in in IN cord-000248-zueoyesj 337 9 the the DT cord-000248-zueoyesj 337 10 same same JJ cord-000248-zueoyesj 337 11 group group NN cord-000248-zueoyesj 337 12 when when WRB cord-000248-zueoyesj 337 13 we -PRON- PRP cord-000248-zueoyesj 337 14 calculated calculate VBD cord-000248-zueoyesj 337 15 the the DT cord-000248-zueoyesj 337 16 average average JJ cord-000248-zueoyesj 337 17 probability probability NN cord-000248-zueoyesj 337 18 profile profile NN cord-000248-zueoyesj 337 19 ( ( -LRB- cord-000248-zueoyesj 337 20 and and CC cord-000248-zueoyesj 337 21 we -PRON- PRP cord-000248-zueoyesj 337 22 have have VBP cord-000248-zueoyesj 337 23 a a DT cord-000248-zueoyesj 337 24 heterogeneous heterogeneous JJ cord-000248-zueoyesj 337 25 group group NN cord-000248-zueoyesj 337 26 ) ) -RRB- cord-000248-zueoyesj 338 1 we -PRON- PRP cord-000248-zueoyesj 338 2 have have VBP cord-000248-zueoyesj 338 3 on on IN cord-000248-zueoyesj 338 4 our -PRON- PRP$ cord-000248-zueoyesj 338 5 ranking ranking JJ cord-000248-zueoyesj 338 6 58 58 CD cord-000248-zueoyesj 338 7 probes probe NNS cord-000248-zueoyesj 338 8 that that WDT cord-000248-zueoyesj 338 9 appear appear VBP cord-000248-zueoyesj 338 10 before before IN cord-000248-zueoyesj 338 11 ADA ADA NNP cord-000248-zueoyesj 339 1 ( ( -LRB- cord-000248-zueoyesj 339 2 we -PRON- PRP cord-000248-zueoyesj 339 3 refer refer VBP cord-000248-zueoyesj 339 4 to to IN cord-000248-zueoyesj 339 5 the the DT cord-000248-zueoyesj 339 6 Supplementary Supplementary NNP cord-000248-zueoyesj 339 7 File File NNP cord-000248-zueoyesj 339 8 Haqq-PLoSONE-SupFile.xls Haqq-PLoSONE-SupFile.xls NNP cord-000248-zueoyesj 339 9 ) ) -RRB- cord-000248-zueoyesj 339 10 . . . cord-000248-zueoyesj 340 1 An an DT cord-000248-zueoyesj 340 2 analysis analysis NN cord-000248-zueoyesj 340 3 using use VBG cord-000248-zueoyesj 340 4 GATHER gather VB cord-000248-zueoyesj 340 5 ( ( -LRB- cord-000248-zueoyesj 340 6 http://gather.genome.duke.edu/ http://gather.genome.duke.edu/ NNP cord-000248-zueoyesj 340 7 ) ) -RRB- cord-000248-zueoyesj 340 8 [ [ -LRB- cord-000248-zueoyesj 340 9 155 155 CD cord-000248-zueoyesj 340 10 ] ] -RRB- cord-000248-zueoyesj 340 11 to to TO cord-000248-zueoyesj 340 12 interpret interpret VB cord-000248-zueoyesj 340 13 the the DT cord-000248-zueoyesj 340 14 collective collective JJ cord-000248-zueoyesj 340 15 influence influence NN cord-000248-zueoyesj 340 16 of of IN cord-000248-zueoyesj 340 17 the the DT cord-000248-zueoyesj 340 18 lack lack NN cord-000248-zueoyesj 340 19 of of IN cord-000248-zueoyesj 340 20 expression expression NN cord-000248-zueoyesj 340 21 of of IN cord-000248-zueoyesj 340 22 all all PDT cord-000248-zueoyesj 340 23 these these DT cord-000248-zueoyesj 340 24 genes gene NNS cord-000248-zueoyesj 340 25 in in IN cord-000248-zueoyesj 340 26 the the DT cord-000248-zueoyesj 340 27 metastasis metastasis NN cord-000248-zueoyesj 340 28 samples sample NNS cord-000248-zueoyesj 340 29 reveals reveal VBZ cord-000248-zueoyesj 340 30 an an DT cord-000248-zueoyesj 340 31 interesting interesting JJ cord-000248-zueoyesj 340 32 new new JJ cord-000248-zueoyesj 340 33 perspective perspective NN cord-000248-zueoyesj 340 34 . . . cord-000248-zueoyesj 341 1 Using use VBG cord-000248-zueoyesj 341 2 Gene Gene NNP cord-000248-zueoyesj 341 3 Ontology Ontology NNP cord-000248-zueoyesj 341 4 , , , cord-000248-zueoyesj 341 5 we -PRON- PRP cord-000248-zueoyesj 341 6 found find VBD cord-000248-zueoyesj 341 7 that that IN cord-000248-zueoyesj 341 8 six six CD cord-000248-zueoyesj 341 9 of of IN cord-000248-zueoyesj 341 10 the the DT cord-000248-zueoyesj 341 11 44 44 CD cord-000248-zueoyesj 341 12 genes gene NNS cord-000248-zueoyesj 341 13 identified identify VBN cord-000248-zueoyesj 341 14 by by IN cord-000248-zueoyesj 341 15 GATHER GATHER NNS cord-000248-zueoyesj 341 16 are be VBP cord-000248-zueoyesj 341 17 related relate VBN cord-000248-zueoyesj 341 18 to to IN cord-000248-zueoyesj 341 19 epidermis epidermis NN cord-000248-zueoyesj 341 20 development development NN cord-000248-zueoyesj 341 21 ( ( -LRB- cord-000248-zueoyesj 341 22 CDSN CDSN NNP cord-000248-zueoyesj 341 23 , , , cord-000248-zueoyesj 341 24 DSP DSP NNP cord-000248-zueoyesj 341 25 , , , cord-000248-zueoyesj 341 26 EVPL EVPL NNP cord-000248-zueoyesj 341 27 , , , cord-000248-zueoyesj 341 28 GJB5 GJB5 NNP cord-000248-zueoyesj 341 29 , , , cord-000248-zueoyesj 341 30 KRT13 KRT13 NNPS cord-000248-zueoyesj 341 31 , , , cord-000248-zueoyesj 341 32 KRT5 KRT5 NNP cord-000248-zueoyesj 341 33 ) ) -RRB- cord-000248-zueoyesj 341 34 , , , cord-000248-zueoyesj 341 35 p p NN cord-000248-zueoyesj 341 36 - - HYPH cord-000248-zueoyesj 341 37 value value NN cord-000248-zueoyesj 341 38 , , , cord-000248-zueoyesj 341 39 0.0001 0.0001 CD cord-000248-zueoyesj 341 40 , , , cord-000248-zueoyesj 341 41 Bayes Bayes NNP cord-000248-zueoyesj 341 42 Factor Factor NNP cord-000248-zueoyesj 341 43 16 16 CD cord-000248-zueoyesj 341 44 , , , cord-000248-zueoyesj 341 45 and and CC cord-000248-zueoyesj 341 46 eight eight CD cord-000248-zueoyesj 341 47 genes gene NNS cord-000248-zueoyesj 341 48 are be VBP cord-000248-zueoyesj 341 49 related relate VBN cord-000248-zueoyesj 341 50 to to IN cord-000248-zueoyesj 341 51 cell cell NN cord-000248-zueoyesj 341 52 adhesion adhesion NN cord-000248-zueoyesj 341 53 ( ( -LRB- cord-000248-zueoyesj 341 54 CDSN CDSN NNP cord-000248-zueoyesj 341 55 , , , cord-000248-zueoyesj 341 56 CLDN1 cldn1 NN cord-000248-zueoyesj 341 57 , , , cord-000248-zueoyesj 341 58 DSG1 DSG1 NNP cord-000248-zueoyesj 341 59 , , , cord-000248-zueoyesj 341 60 DST DST NNP cord-000248-zueoyesj 341 61 , , , cord-000248-zueoyesj 341 62 LGALS7 LGALS7 NNP cord-000248-zueoyesj 341 63 , , , cord-000248-zueoyesj 341 64 LRIG3 LRIG3 NNP cord-000248-zueoyesj 341 65 , , , cord-000248-zueoyesj 341 66 PCDH21 PCDH21 NNP cord-000248-zueoyesj 341 67 , , , cord-000248-zueoyesj 341 68 PKP1 PKP1 NNP cord-000248-zueoyesj 341 69 ) ) -RRB- cord-000248-zueoyesj 341 70 , , , cord-000248-zueoyesj 341 71 p p NN cord-000248-zueoyesj 341 72 - - HYPH cord-000248-zueoyesj 341 73 value,0.0001 value,0.0001 NNP cord-000248-zueoyesj 341 74 , , , cord-000248-zueoyesj 341 75 Bayes Bayes NNP cord-000248-zueoyesj 341 76 Factor Factor NNP cord-000248-zueoyesj 341 77 7 7 CD cord-000248-zueoyesj 341 78 . . . cord-000248-zueoyesj 342 1 ANK1 ank1 DT cord-000248-zueoyesj 342 2 ( ( -LRB- cord-000248-zueoyesj 342 3 Ankyrin Ankyrin NNP cord-000248-zueoyesj 342 4 1 1 CD cord-000248-zueoyesj 342 5 , , , cord-000248-zueoyesj 342 6 erythrocytic erythrocytic NNP cord-000248-zueoyesj 342 7 ) ) -RRB- cord-000248-zueoyesj 342 8 , , , cord-000248-zueoyesj 342 9 AA464755 AA464755 NNP cord-000248-zueoyesj 342 10 was be VBD cord-000248-zueoyesj 342 11 also also RB cord-000248-zueoyesj 342 12 singled single VBN cord-000248-zueoyesj 342 13 out out RP cord-000248-zueoyesj 342 14 as as IN cord-000248-zueoyesj 342 15 by by IN cord-000248-zueoyesj 342 16 our -PRON- PRP$ cord-000248-zueoyesj 342 17 Gene Gene NNP cord-000248-zueoyesj 342 18 Ontology Ontology NNP cord-000248-zueoyesj 342 19 analysis analysis NN cord-000248-zueoyesj 342 20 as as IN cord-000248-zueoyesj 342 21 related relate VBN cord-000248-zueoyesj 342 22 to to IN cord-000248-zueoyesj 342 23 the the DT cord-000248-zueoyesj 342 24 maintenance maintenance NN cord-000248-zueoyesj 342 25 of of IN cord-000248-zueoyesj 342 26 epithelial epithelial JJ cord-000248-zueoyesj 342 27 cell cell NN cord-000248-zueoyesj 342 28 polarity polarity NN cord-000248-zueoyesj 342 29 ( ( -LRB- cord-000248-zueoyesj 342 30 p p NN cord-000248-zueoyesj 342 31 - - HYPH cord-000248-zueoyesj 342 32 value value NN cord-000248-zueoyesj 342 33 = = SYM cord-000248-zueoyesj 342 34 0.002 0.002 CD cord-000248-zueoyesj 342 35 , , , cord-000248-zueoyesj 342 36 Bayes Bayes NNP cord-000248-zueoyesj 342 37 Factor Factor NNP cord-000248-zueoyesj 342 38 3 3 CD cord-000248-zueoyesj 342 39 ) ) -RRB- cord-000248-zueoyesj 342 40 . . . cord-000248-zueoyesj 343 1 The the DT cord-000248-zueoyesj 343 2 use use NN cord-000248-zueoyesj 343 3 of of IN cord-000248-zueoyesj 343 4 another another DT cord-000248-zueoyesj 343 5 profiler profiler NN cord-000248-zueoyesj 343 6 of of IN cord-000248-zueoyesj 343 7 genome genome NN cord-000248-zueoyesj 343 8 signatures signature NNS cord-000248-zueoyesj 343 9 ( ( -LRB- cord-000248-zueoyesj 343 10 g g NN cord-000248-zueoyesj 343 11 : : : cord-000248-zueoyesj 343 12 Profiler profiler NN cord-000248-zueoyesj 343 13 , , , cord-000248-zueoyesj 343 14 [ [ -LRB- cord-000248-zueoyesj 343 15 156 156 CD cord-000248-zueoyesj 343 16 ] ] -RRB- cord-000248-zueoyesj 343 17 ) ) -RRB- cord-000248-zueoyesj 343 18 also also RB cord-000248-zueoyesj 343 19 reinforces reinforce VBZ cord-000248-zueoyesj 343 20 the the DT cord-000248-zueoyesj 343 21 view view NN cord-000248-zueoyesj 343 22 that that IN cord-000248-zueoyesj 343 23 many many JJ cord-000248-zueoyesj 343 24 genes gene NNS cord-000248-zueoyesj 343 25 that that WDT cord-000248-zueoyesj 343 26 have have VBP cord-000248-zueoyesj 343 27 lost lose VBN cord-000248-zueoyesj 343 28 expression expression NN cord-000248-zueoyesj 343 29 are be VBP cord-000248-zueoyesj 343 30 related relate VBN cord-000248-zueoyesj 343 31 to to IN cord-000248-zueoyesj 343 32 ' ' `` cord-000248-zueoyesj 343 33 Epidermis Epidermis NNP cord-000248-zueoyesj 343 34 Development Development NNP cord-000248-zueoyesj 343 35 ' ' '' cord-000248-zueoyesj 343 36 ( ( -LRB- cord-000248-zueoyesj 343 37 COL17A1 COL17A1 NNP cord-000248-zueoyesj 343 38 , , , cord-000248-zueoyesj 343 39 DSP DSP NNP cord-000248-zueoyesj 343 40 , , , cord-000248-zueoyesj 343 41 EVPL EVPL NNP cord-000248-zueoyesj 343 42 , , , cord-000248-zueoyesj 343 43 GJB5 GJB5 NNP cord-000248-zueoyesj 343 44 , , , cord-000248-zueoyesj 343 45 KRT13 KRT13 NNPS cord-000248-zueoyesj 343 46 , , , cord-000248-zueoyesj 343 47 KRT5 KRT5 NNP cord-000248-zueoyesj 343 48 , , , cord-000248-zueoyesj 343 49 LCE1C LCE1C NNS cord-000248-zueoyesj 343 50 , , , cord-000248-zueoyesj 343 51 MAFG MAFG NNP cord-000248-zueoyesj 343 52 , , , cord-000248-zueoyesj 343 53 TGM3 TGM3 NNP cord-000248-zueoyesj 343 54 ) ) -RRB- cord-000248-zueoyesj 343 55 with with IN cord-000248-zueoyesj 343 56 p p NN cord-000248-zueoyesj 343 57 - - HYPH cord-000248-zueoyesj 343 58 value value NN cord-000248-zueoyesj 343 59 = = NFP cord-000248-zueoyesj 343 60 7.78E-11 7.78e-11 CD cord-000248-zueoyesj 343 61 . . . cord-000248-zueoyesj 344 1 Thirteen thirteen CD cord-000248-zueoyesj 344 2 are be VBP cord-000248-zueoyesj 344 3 associated associate VBN cord-000248-zueoyesj 344 4 with with IN cord-000248-zueoyesj 344 5 Gene Gene NNP cord-000248-zueoyesj 344 6 Ontology Ontology NNP cord-000248-zueoyesj 344 7 function function NN cord-000248-zueoyesj 344 8 of of IN cord-000248-zueoyesj 344 9 cell cell NN cord-000248-zueoyesj 344 10 communication communication NN cord-000248-zueoyesj 344 11 ( ( -LRB- cord-000248-zueoyesj 344 12 ANK1 ANK1 NNP cord-000248-zueoyesj 344 13 , , , cord-000248-zueoyesj 344 14 CDSN CDSN NNP cord-000248-zueoyesj 344 15 , , , cord-000248-zueoyesj 344 16 CLDN1 CLDN1 NNP cord-000248-zueoyesj 344 17 , , , cord-000248-zueoyesj 344 18 DSG1 DSG1 NNP cord-000248-zueoyesj 344 19 , , , cord-000248-zueoyesj 344 20 DST DST NNP cord-000248-zueoyesj 344 21 , , , cord-000248-zueoyesj 344 22 GCHFR GCHFR NNP cord-000248-zueoyesj 344 23 , , , cord-000248-zueoyesj 344 24 GJB5 GJB5 NNP cord-000248-zueoyesj 344 25 , , , cord-000248-zueoyesj 344 26 GPR115 GPR115 NNP cord-000248-zueoyesj 344 27 , , , cord-000248-zueoyesj 344 28 LGALS7 LGALS7 NNP cord-000248-zueoyesj 344 29 , , , cord-000248-zueoyesj 344 30 LRIG3 LRIG3 NNP cord-000248-zueoyesj 344 31 , , . cord-000248-zueoyesj 345 1 PCDH21 PCDH21 NNP cord-000248-zueoyesj 345 2 , , , cord-000248-zueoyesj 345 3 PKP1 PKP1 NNP cord-000248-zueoyesj 345 4 , , , cord-000248-zueoyesj 345 5 PTGER3 PTGER3 NNP cord-000248-zueoyesj 345 6 ) ) -RRB- cord-000248-zueoyesj 345 7 , , , cord-000248-zueoyesj 345 8 albeit albeit IN cord-000248-zueoyesj 345 9 with with IN cord-000248-zueoyesj 345 10 a a DT cord-000248-zueoyesj 345 11 pvalue pvalue NN cord-000248-zueoyesj 345 12 of of IN cord-000248-zueoyesj 345 13 only only RB cord-000248-zueoyesj 345 14 0.02 0.02 CD cord-000248-zueoyesj 345 15 . . . cord-000248-zueoyesj 346 1 GCHFR GCHFR NNP cord-000248-zueoyesj 346 2 is be VBZ cord-000248-zueoyesj 346 3 also also RB cord-000248-zueoyesj 346 4 involved involve VBN cord-000248-zueoyesj 346 5 in in IN cord-000248-zueoyesj 346 6 nitric nitric JJ cord-000248-zueoyesj 346 7 oxide oxide NN cord-000248-zueoyesj 346 8 metabolism metabolism NN cord-000248-zueoyesj 346 9 . . . cord-000248-zueoyesj 347 1 If if IN cord-000248-zueoyesj 347 2 we -PRON- PRP cord-000248-zueoyesj 347 3 add add VBP cord-000248-zueoyesj 347 4 to to IN cord-000248-zueoyesj 347 5 the the DT cord-000248-zueoyesj 347 6 list list NN cord-000248-zueoyesj 347 7 of of IN cord-000248-zueoyesj 347 8 44 44 CD cord-000248-zueoyesj 347 9 genes gene NNS cord-000248-zueoyesj 347 10 already already RB cord-000248-zueoyesj 347 11 recognized recognize VBN cord-000248-zueoyesj 347 12 by by IN cord-000248-zueoyesj 347 13 GATHER gather VB cord-000248-zueoyesj 347 14 the the DT cord-000248-zueoyesj 347 15 other other JJ cord-000248-zueoyesj 347 16 77 77 CD cord-000248-zueoyesj 347 17 probes probe NNS cord-000248-zueoyesj 347 18 that that WDT cord-000248-zueoyesj 347 19 after after IN cord-000248-zueoyesj 347 20 ADA ADA NNP cord-000248-zueoyesj 347 21 in in IN cord-000248-zueoyesj 347 22 this this DT cord-000248-zueoyesj 347 23 ranking ranking NN cord-000248-zueoyesj 347 24 have have VBP cord-000248-zueoyesj 347 25 also also RB cord-000248-zueoyesj 347 26 loss loss NN cord-000248-zueoyesj 347 27 of of IN cord-000248-zueoyesj 347 28 expression expression NN cord-000248-zueoyesj 347 29 ( ( -LRB- cord-000248-zueoyesj 347 30 until until IN cord-000248-zueoyesj 347 31 we -PRON- PRP cord-000248-zueoyesj 347 32 found find VBD cord-000248-zueoyesj 347 33 PDXP PDXP NNP cord-000248-zueoyesj 347 34 ( ( -LRB- cord-000248-zueoyesj 347 35 Pyridoxal Pyridoxal NNP cord-000248-zueoyesj 347 36 ( ( -LRB- cord-000248-zueoyesj 347 37 pyridoxine pyridoxine NN cord-000248-zueoyesj 347 38 , , , cord-000248-zueoyesj 347 39 vitamin vitamin NN cord-000248-zueoyesj 347 40 B6 b6 NN cord-000248-zueoyesj 347 41 ) ) -RRB- cord-000248-zueoyesj 347 42 phosphatase phosphatase NN cord-000248-zueoyesj 347 43 ) ) -RRB- cord-000248-zueoyesj 347 44 , , , cord-000248-zueoyesj 347 45 the the DT cord-000248-zueoyesj 347 46 evidence evidence NN cord-000248-zueoyesj 347 47 is be VBZ cord-000248-zueoyesj 347 48 stronger strong JJR cord-000248-zueoyesj 347 49 , , , cord-000248-zueoyesj 347 50 now now RB cord-000248-zueoyesj 347 51 COL7A1 COL7A1 NNP cord-000248-zueoyesj 347 52 , , , cord-000248-zueoyesj 347 53 GJB5 GJB5 NNP cord-000248-zueoyesj 347 54 , , , cord-000248-zueoyesj 347 55 KLK4 KLK4 NNP cord-000248-zueoyesj 347 56 , , , cord-000248-zueoyesj 347 57 and and CC cord-000248-zueoyesj 347 58 KRT1 KRT1 NNP cord-000248-zueoyesj 347 59 also also RB cord-000248-zueoyesj 347 60 is be VBZ cord-000248-zueoyesj 347 61 in in IN cord-000248-zueoyesj 347 62 this this DT cord-000248-zueoyesj 347 63 group group NN cord-000248-zueoyesj 347 64 ( ( -LRB- cord-000248-zueoyesj 347 65 the the DT cord-000248-zueoyesj 347 66 Bayes Bayes NNP cord-000248-zueoyesj 347 67 factor factor NN cord-000248-zueoyesj 347 68 of of IN cord-000248-zueoyesj 347 69 this this DT cord-000248-zueoyesj 347 70 association association NN cord-000248-zueoyesj 347 71 returned return VBD cord-000248-zueoyesj 347 72 by by IN cord-000248-zueoyesj 347 73 Gather Gather NNP cord-000248-zueoyesj 347 74 is be VBZ cord-000248-zueoyesj 347 75 now now RB cord-000248-zueoyesj 347 76 21 21 CD cord-000248-zueoyesj 347 77 for for IN cord-000248-zueoyesj 347 78 the the DT cord-000248-zueoyesj 347 79 GO GO NNP cord-000248-zueoyesj 347 80 term term NN cord-000248-zueoyesj 347 81 ' ' `` cord-000248-zueoyesj 347 82 Epidermis epidermis NN cord-000248-zueoyesj 347 83 development development NN cord-000248-zueoyesj 347 84 ' ' '' cord-000248-zueoyesj 347 85 ) ) -RRB- cord-000248-zueoyesj 347 86 . . . cord-000248-zueoyesj 347 87 ' ' '' cord-000248-zueoyesj 348 1 Cell cell NN cord-000248-zueoyesj 348 2 adhesion adhesion NN cord-000248-zueoyesj 348 3 ' ' '' cord-000248-zueoyesj 348 4 has have VBZ cord-000248-zueoyesj 348 5 now now RB cord-000248-zueoyesj 348 6 13 13 CD cord-000248-zueoyesj 348 7 genes gene NNS cord-000248-zueoyesj 348 8 , , , cord-000248-zueoyesj 348 9 CDSN CDSN NNP cord-000248-zueoyesj 348 10 , , , cord-000248-zueoyesj 348 11 CLDN1 cldn1 NN cord-000248-zueoyesj 348 12 , , , cord-000248-zueoyesj 348 13 COL7A1 COL7A1 NNP cord-000248-zueoyesj 348 14 , , , cord-000248-zueoyesj 348 15 DSC2 DSC2 NNP cord-000248-zueoyesj 348 16 , , , cord-000248-zueoyesj 348 17 DSG1 DSG1 NNP cord-000248-zueoyesj 348 18 , , , cord-000248-zueoyesj 348 19 DST DST NNP cord-000248-zueoyesj 348 20 , , , cord-000248-zueoyesj 348 21 JUP JUP NNP cord-000248-zueoyesj 348 22 , , , cord-000248-zueoyesj 348 23 LGALS7 LGALS7 NNP cord-000248-zueoyesj 348 24 , , , cord-000248-zueoyesj 348 25 LRIG3 LRIG3 NNP cord-000248-zueoyesj 348 26 , , , cord-000248-zueoyesj 348 27 PCDH21 PCDH21 NNP cord-000248-zueoyesj 348 28 , , , cord-000248-zueoyesj 348 29 PKP1 PKP1 NNP cord-000248-zueoyesj 348 30 , , , cord-000248-zueoyesj 349 1 SLIT3 SLIT3 . cord-000248-zueoyesj 350 1 THBS3 THBS3 NNP cord-000248-zueoyesj 351 1 ( ( -LRB- cord-000248-zueoyesj 351 2 p p NN cord-000248-zueoyesj 351 3 - - HYPH cord-000248-zueoyesj 351 4 value,0.001 value,0.001 NNP cord-000248-zueoyesj 351 5 , , , cord-000248-zueoyesj 351 6 Bayes Bayes NNP cord-000248-zueoyesj 351 7 factor factor NN cord-000248-zueoyesj 351 8 10 10 CD cord-000248-zueoyesj 351 9 ) ) -RRB- cord-000248-zueoyesj 351 10 . . . cord-000248-zueoyesj 352 1 These these DT cord-000248-zueoyesj 352 2 results result NNS cord-000248-zueoyesj 352 3 are be VBP cord-000248-zueoyesj 352 4 considered consider VBN cord-000248-zueoyesj 352 5 statistically statistically RB cord-000248-zueoyesj 352 6 very very RB cord-000248-zueoyesj 352 7 relevant relevant JJ cord-000248-zueoyesj 352 8 as as IN cord-000248-zueoyesj 352 9 identifiers identifier NNS cord-000248-zueoyesj 352 10 of of IN cord-000248-zueoyesj 352 11 a a DT cord-000248-zueoyesj 352 12 particular particular JJ cord-000248-zueoyesj 352 13 process process NN cord-000248-zueoyesj 352 14 which which WDT cord-000248-zueoyesj 352 15 seems seem VBZ cord-000248-zueoyesj 352 16 to to TO cord-000248-zueoyesj 352 17 be be VB cord-000248-zueoyesj 352 18 undermined undermine VBN cord-000248-zueoyesj 352 19 by by IN cord-000248-zueoyesj 352 20 this this DT cord-000248-zueoyesj 352 21 collective collective JJ cord-000248-zueoyesj 352 22 loss loss NN cord-000248-zueoyesj 352 23 of of IN cord-000248-zueoyesj 352 24 expression expression NN cord-000248-zueoyesj 352 25 . . . cord-000248-zueoyesj 353 1 If if IN cord-000248-zueoyesj 353 2 we -PRON- PRP cord-000248-zueoyesj 353 3 put put VBP cord-000248-zueoyesj 353 4 all all PDT cord-000248-zueoyesj 353 5 this this DT cord-000248-zueoyesj 353 6 information information NN cord-000248-zueoyesj 353 7 together together RB cord-000248-zueoyesj 353 8 , , , cord-000248-zueoyesj 353 9 we -PRON- PRP cord-000248-zueoyesj 353 10 clearly clearly RB cord-000248-zueoyesj 353 11 observe observe VBP cord-000248-zueoyesj 353 12 a a DT cord-000248-zueoyesj 353 13 pattern pattern NN cord-000248-zueoyesj 353 14 of of IN cord-000248-zueoyesj 353 15 downregulation downregulation NN cord-000248-zueoyesj 353 16 of of IN cord-000248-zueoyesj 353 17 gene gene NN cord-000248-zueoyesj 353 18 expression expression NN cord-000248-zueoyesj 353 19 that that WDT cord-000248-zueoyesj 353 20 is be VBZ cord-000248-zueoyesj 353 21 associated associate VBN cord-000248-zueoyesj 353 22 with with IN cord-000248-zueoyesj 353 23 an an DT cord-000248-zueoyesj 353 24 impairment impairment NN cord-000248-zueoyesj 353 25 of of IN cord-000248-zueoyesj 353 26 epidermis epidermis NN cord-000248-zueoyesj 353 27 development development NN cord-000248-zueoyesj 353 28 and and CC cord-000248-zueoyesj 353 29 the the DT cord-000248-zueoyesj 353 30 maintainance maintainance NN cord-000248-zueoyesj 353 31 of of IN cord-000248-zueoyesj 353 32 its -PRON- PRP$ cord-000248-zueoyesj 353 33 structure structure NN cord-000248-zueoyesj 353 34 ( ( -LRB- cord-000248-zueoyesj 353 35 Figure Figure NNP cord-000248-zueoyesj 353 36 8 8 CD cord-000248-zueoyesj 353 37 and and CC cord-000248-zueoyesj 353 38 Table Table NNP cord-000248-zueoyesj 353 39 1 1 CD cord-000248-zueoyesj 353 40 ) ) -RRB- cord-000248-zueoyesj 353 41 . . . cord-000248-zueoyesj 354 1 This this DT cord-000248-zueoyesj 354 2 is be VBZ cord-000248-zueoyesj 354 3 , , , cord-000248-zueoyesj 354 4 perhaps perhaps RB cord-000248-zueoyesj 354 5 , , , cord-000248-zueoyesj 354 6 an an DT cord-000248-zueoyesj 354 7 instantiation instantiation NN cord-000248-zueoyesj 354 8 of of IN cord-000248-zueoyesj 354 9 one one CD cord-000248-zueoyesj 354 10 of of IN cord-000248-zueoyesj 354 11 the the DT cord-000248-zueoyesj 354 12 ' ' '' cord-000248-zueoyesj 354 13 ' ' `` cord-000248-zueoyesj 354 14 extended extend VBN cord-000248-zueoyesj 354 15 hallmarks hallmark NNS cord-000248-zueoyesj 354 16 of of IN cord-000248-zueoyesj 354 17 cancer cancer NN cord-000248-zueoyesj 354 18 ' ' '' cord-000248-zueoyesj 354 19 ' ' '' cord-000248-zueoyesj 355 1 ( ( -LRB- cord-000248-zueoyesj 355 2 that that DT cord-000248-zueoyesj 355 3 of of IN cord-000248-zueoyesj 355 4 ' ' `` cord-000248-zueoyesj 355 5 ' ' '' cord-000248-zueoyesj 355 6 tissue tissue NN cord-000248-zueoyesj 355 7 dedifferentiation dedifferentiation NN cord-000248-zueoyesj 355 8 ' ' '' cord-000248-zueoyesj 355 9 ' ' '' cord-000248-zueoyesj 355 10 ) ) -RRB- cord-000248-zueoyesj 355 11 . . . cord-000248-zueoyesj 356 1 This this DT cord-000248-zueoyesj 356 2 process process NN cord-000248-zueoyesj 356 3 includes include VBZ cord-000248-zueoyesj 356 4 the the DT cord-000248-zueoyesj 356 5 loss loss NN cord-000248-zueoyesj 356 6 of of IN cord-000248-zueoyesj 356 7 function function NN cord-000248-zueoyesj 356 8 of of IN cord-000248-zueoyesj 356 9 genes gene NNS cord-000248-zueoyesj 356 10 that that WDT cord-000248-zueoyesj 356 11 are be VBP cord-000248-zueoyesj 356 12 essential essential JJ cord-000248-zueoyesj 356 13 for for IN cord-000248-zueoyesj 356 14 the the DT cord-000248-zueoyesj 356 15 maitainance maitainance NN cord-000248-zueoyesj 356 16 of of IN cord-000248-zueoyesj 356 17 tight tight JJ cord-000248-zueoyesj 356 18 junction junction NN cord-000248-zueoyesj 356 19 and and CC cord-000248-zueoyesj 356 20 epithelial epithelial JJ cord-000248-zueoyesj 356 21 cell cell NN cord-000248-zueoyesj 356 22 - - HYPH cord-000248-zueoyesj 356 23 cell cell NN cord-000248-zueoyesj 356 24 communication communication NN cord-000248-zueoyesj 356 25 . . . cord-000248-zueoyesj 357 1 While while IN cord-000248-zueoyesj 357 2 loss loss NN cord-000248-zueoyesj 357 3 of of IN cord-000248-zueoyesj 357 4 epithelial epithelial JJ cord-000248-zueoyesj 357 5 structure structure NN cord-000248-zueoyesj 357 6 is be VBZ cord-000248-zueoyesj 357 7 related relate VBN cord-000248-zueoyesj 357 8 to to IN cord-000248-zueoyesj 357 9 these these DT cord-000248-zueoyesj 357 10 genes gene NNS cord-000248-zueoyesj 357 11 , , , cord-000248-zueoyesj 357 12 we -PRON- PRP cord-000248-zueoyesj 357 13 observe observe VBP cord-000248-zueoyesj 357 14 that that IN cord-000248-zueoyesj 357 15 those those DT cord-000248-zueoyesj 357 16 that that WDT cord-000248-zueoyesj 357 17 increase increase VBP cord-000248-zueoyesj 357 18 expression expression NN cord-000248-zueoyesj 357 19 are be VBP cord-000248-zueoyesj 357 20 associated associate VBN cord-000248-zueoyesj 357 21 to to IN cord-000248-zueoyesj 357 22 other other JJ cord-000248-zueoyesj 357 23 developmental developmental JJ cord-000248-zueoyesj 357 24 processes process NNS cord-000248-zueoyesj 357 25 , , , cord-000248-zueoyesj 357 26 not not RB cord-000248-zueoyesj 357 27 necessarily necessarily RB cord-000248-zueoyesj 357 28 concerted concert VBN cord-000248-zueoyesj 357 29 in in IN cord-000248-zueoyesj 357 30 this this DT cord-000248-zueoyesj 357 31 panel panel NN cord-000248-zueoyesj 357 32 . . . cord-000248-zueoyesj 358 1 Instead instead RB cord-000248-zueoyesj 358 2 they -PRON- PRP cord-000248-zueoyesj 358 3 show show VBP cord-000248-zueoyesj 358 4 a a DT cord-000248-zueoyesj 358 5 pattern pattern NN cord-000248-zueoyesj 358 6 of of IN cord-000248-zueoyesj 358 7 increasing increase VBG cord-000248-zueoyesj 358 8 cell cell NN cord-000248-zueoyesj 358 9 motility motility NN cord-000248-zueoyesj 358 10 , , , cord-000248-zueoyesj 358 11 chemotaxis chemotaxis NN cord-000248-zueoyesj 358 12 and and CC cord-000248-zueoyesj 358 13 positive positive JJ cord-000248-zueoyesj 358 14 regulation regulation NN cord-000248-zueoyesj 358 15 of of IN cord-000248-zueoyesj 358 16 cell cell NN cord-000248-zueoyesj 358 17 proliferation proliferation NN cord-000248-zueoyesj 358 18 . . . cord-000248-zueoyesj 359 1 We -PRON- PRP cord-000248-zueoyesj 359 2 will will MD cord-000248-zueoyesj 359 3 first first RB cord-000248-zueoyesj 359 4 discuss discuss VB cord-000248-zueoyesj 359 5 the the DT cord-000248-zueoyesj 359 6 processes process NNS cord-000248-zueoyesj 359 7 related relate VBN cord-000248-zueoyesj 359 8 to to IN cord-000248-zueoyesj 359 9 the the DT cord-000248-zueoyesj 359 10 loss loss NN cord-000248-zueoyesj 359 11 of of IN cord-000248-zueoyesj 359 12 adhesion adhesion NN cord-000248-zueoyesj 359 13 , , , cord-000248-zueoyesj 359 14 which which WDT cord-000248-zueoyesj 359 15 could could MD cord-000248-zueoyesj 359 16 be be VB cord-000248-zueoyesj 359 17 linked link VBN cord-000248-zueoyesj 359 18 to to IN cord-000248-zueoyesj 359 19 an an DT cord-000248-zueoyesj 359 20 increased increase VBN cord-000248-zueoyesj 359 21 probability probability NN cord-000248-zueoyesj 359 22 of of IN cord-000248-zueoyesj 359 23 metastatic metastatic JJ cord-000248-zueoyesj 359 24 potential potential NN cord-000248-zueoyesj 359 25 of of IN cord-000248-zueoyesj 359 26 these these DT cord-000248-zueoyesj 359 27 cells cell NNS cord-000248-zueoyesj 359 28 . . . cord-000248-zueoyesj 360 1 The the DT cord-000248-zueoyesj 360 2 loss loss NN cord-000248-zueoyesj 360 3 of of IN cord-000248-zueoyesj 360 4 expression expression NN cord-000248-zueoyesj 360 5 of of IN cord-000248-zueoyesj 360 6 Plakophilin Plakophilin NNP cord-000248-zueoyesj 360 7 1 1 CD cord-000248-zueoyesj 360 8 , , , cord-000248-zueoyesj 360 9 Junction Junction NNP cord-000248-zueoyesj 360 10 plakoglobin plakoglobin NN cord-000248-zueoyesj 360 11 , , , cord-000248-zueoyesj 360 12 Desmoplakin Desmoplakin NNP cord-000248-zueoyesj 360 13 and and CC cord-000248-zueoyesj 360 14 Desmoglein Desmoglein NNP cord-000248-zueoyesj 360 15 1 1 CD cord-000248-zueoyesj 360 16 indicate indicate VBP cord-000248-zueoyesj 360 17 deficiencies deficiency NNS cord-000248-zueoyesj 360 18 in in IN cord-000248-zueoyesj 360 19 desmosome desmosome NN cord-000248-zueoyesj 360 20 processes process NNS cord-000248-zueoyesj 360 21 . . . cord-000248-zueoyesj 361 1 In in IN cord-000248-zueoyesj 361 2 general general JJ cord-000248-zueoyesj 361 3 , , , cord-000248-zueoyesj 361 4 this this DT cord-000248-zueoyesj 361 5 panel panel NN cord-000248-zueoyesj 361 6 is be VBZ cord-000248-zueoyesj 361 7 composed compose VBN cord-000248-zueoyesj 361 8 of of IN cord-000248-zueoyesj 361 9 a a DT cord-000248-zueoyesj 361 10 number number NN cord-000248-zueoyesj 361 11 of of IN cord-000248-zueoyesj 361 12 genes gene NNS cord-000248-zueoyesj 361 13 that that WDT cord-000248-zueoyesj 361 14 are be VBP cord-000248-zueoyesj 361 15 losing lose VBG cord-000248-zueoyesj 361 16 expression expression NN cord-000248-zueoyesj 361 17 during during IN cord-000248-zueoyesj 361 18 progression progression NN cord-000248-zueoyesj 361 19 and and CC cord-000248-zueoyesj 361 20 that that WDT cord-000248-zueoyesj 361 21 have have VBP cord-000248-zueoyesj 361 22 Gene Gene NNP cord-000248-zueoyesj 361 23 Ontology Ontology NNP cord-000248-zueoyesj 361 24 annotations annotation NNS cord-000248-zueoyesj 361 25 related relate VBN cord-000248-zueoyesj 361 26 to to IN cord-000248-zueoyesj 361 27 tight tight JJ cord-000248-zueoyesj 361 28 junctions junction NNS cord-000248-zueoyesj 361 29 , , , cord-000248-zueoyesj 361 30 gap gap NN cord-000248-zueoyesj 361 31 junctions junction NNS cord-000248-zueoyesj 361 32 , , , cord-000248-zueoyesj 361 33 adherens adheren NNS cord-000248-zueoyesj 361 34 junctions junction NNS cord-000248-zueoyesj 361 35 and and CC cord-000248-zueoyesj 361 36 desmosomes desmosome NNS cord-000248-zueoyesj 361 37 , , , cord-000248-zueoyesj 361 38 and and CC cord-000248-zueoyesj 361 39 an an DT cord-000248-zueoyesj 361 40 impaired impaired JJ cord-000248-zueoyesj 361 41 set set NN cord-000248-zueoyesj 361 42 of of IN cord-000248-zueoyesj 361 43 processes process NNS cord-000248-zueoyesj 361 44 that that WDT cord-000248-zueoyesj 361 45 link link VBP cord-000248-zueoyesj 361 46 , , , cord-000248-zueoyesj 361 47 via via IN cord-000248-zueoyesj 361 48 intercellular intercellular JJ cord-000248-zueoyesj 361 49 channels channel NNS cord-000248-zueoyesj 361 50 and and CC cord-000248-zueoyesj 361 51 bridges bridge NNS cord-000248-zueoyesj 361 52 , , , cord-000248-zueoyesj 361 53 the the DT cord-000248-zueoyesj 361 54 cells cell NNS cord-000248-zueoyesj 361 55 of of IN cord-000248-zueoyesj 361 56 the the DT cord-000248-zueoyesj 361 57 epidermis epidermis NN cord-000248-zueoyesj 361 58 . . . cord-000248-zueoyesj 362 1 Mutations mutation NNS cord-000248-zueoyesj 362 2 in in IN cord-000248-zueoyesj 362 3 these these DT cord-000248-zueoyesj 362 4 genes gene NNS cord-000248-zueoyesj 362 5 are be VBP cord-000248-zueoyesj 362 6 linked link VBN cord-000248-zueoyesj 362 7 to to IN cord-000248-zueoyesj 362 8 a a DT cord-000248-zueoyesj 362 9 number number NN cord-000248-zueoyesj 362 10 of of IN cord-000248-zueoyesj 362 11 skin skin NN cord-000248-zueoyesj 362 12 genetic genetic JJ cord-000248-zueoyesj 362 13 diseases disease NNS cord-000248-zueoyesj 362 14 [ [ -LRB- cord-000248-zueoyesj 362 15 157 157 CD cord-000248-zueoyesj 362 16 , , , cord-000248-zueoyesj 362 17 158 158 CD cord-000248-zueoyesj 362 18 , , , cord-000248-zueoyesj 362 19 159 159 CD cord-000248-zueoyesj 362 20 , , , cord-000248-zueoyesj 362 21 160 160 CD cord-000248-zueoyesj 362 22 , , , cord-000248-zueoyesj 362 23 161 161 CD cord-000248-zueoyesj 362 24 , , , cord-000248-zueoyesj 362 25 162 162 CD cord-000248-zueoyesj 362 26 , , , cord-000248-zueoyesj 362 27 163 163 CD cord-000248-zueoyesj 362 28 , , , cord-000248-zueoyesj 362 29 164 164 CD cord-000248-zueoyesj 362 30 , , , cord-000248-zueoyesj 362 31 165 165 CD cord-000248-zueoyesj 362 32 , , , cord-000248-zueoyesj 362 33 166 166 CD cord-000248-zueoyesj 362 34 , , , cord-000248-zueoyesj 362 35 167 167 CD cord-000248-zueoyesj 362 36 , , , cord-000248-zueoyesj 362 37 168 168 CD cord-000248-zueoyesj 362 38 , , , cord-000248-zueoyesj 362 39 169 169 CD cord-000248-zueoyesj 362 40 , , , cord-000248-zueoyesj 362 41 170 170 CD cord-000248-zueoyesj 362 42 ] ] -RRB- cord-000248-zueoyesj 363 1 The the DT cord-000248-zueoyesj 363 2 desmosome desmosome NN cord-000248-zueoyesj 363 3 are be VBP cord-000248-zueoyesj 363 4 cell cell NN cord-000248-zueoyesj 363 5 - - HYPH cord-000248-zueoyesj 363 6 cell cell NN cord-000248-zueoyesj 363 7 adhesive adhesive NN cord-000248-zueoyesj 363 8 junctions junction NNS cord-000248-zueoyesj 363 9 which which WDT cord-000248-zueoyesj 363 10 provide provide VBP cord-000248-zueoyesj 363 11 a a DT cord-000248-zueoyesj 363 12 mechanical mechanical JJ cord-000248-zueoyesj 363 13 coupling coupling NN cord-000248-zueoyesj 363 14 between between IN cord-000248-zueoyesj 363 15 cells cell NNS cord-000248-zueoyesj 363 16 . . . cord-000248-zueoyesj 364 1 These these DT cord-000248-zueoyesj 364 2 junctions junction NNS cord-000248-zueoyesj 364 3 are be VBP cord-000248-zueoyesj 364 4 found find VBN cord-000248-zueoyesj 364 5 in in IN cord-000248-zueoyesj 364 6 several several JJ cord-000248-zueoyesj 364 7 epithelial epithelial JJ cord-000248-zueoyesj 364 8 tissues tissue NNS cord-000248-zueoyesj 364 9 and and CC cord-000248-zueoyesj 364 10 the the DT cord-000248-zueoyesj 364 11 decreased decrease VBN cord-000248-zueoyesj 364 12 assembly assembly NN cord-000248-zueoyesj 364 13 of of IN cord-000248-zueoyesj 364 14 the the DT cord-000248-zueoyesj 364 15 desmosome desmosome NN cord-000248-zueoyesj 364 16 has have VBZ cord-000248-zueoyesj 364 17 been be VBN cord-000248-zueoyesj 364 18 shown show VBN cord-000248-zueoyesj 364 19 to to TO cord-000248-zueoyesj 364 20 be be VB cord-000248-zueoyesj 364 21 a a DT cord-000248-zueoyesj 364 22 common common JJ cord-000248-zueoyesj 364 23 feature feature NN cord-000248-zueoyesj 364 24 of of IN cord-000248-zueoyesj 364 25 many many JJ cord-000248-zueoyesj 364 26 epithelial epithelial JJ cord-000248-zueoyesj 364 27 cancers cancer NNS cord-000248-zueoyesj 364 28 [ [ -LRB- cord-000248-zueoyesj 364 29 171 171 CD cord-000248-zueoyesj 364 30 , , , cord-000248-zueoyesj 364 31 172 172 CD cord-000248-zueoyesj 364 32 ] ] -RRB- cord-000248-zueoyesj 364 33 . . . cord-000248-zueoyesj 365 1 Plakoglobin Plakoglobin NNP cord-000248-zueoyesj 365 2 helps help VBZ cord-000248-zueoyesj 365 3 to to TO cord-000248-zueoyesj 365 4 connect connect VB cord-000248-zueoyesj 365 5 transmembrane transmembrane JJ cord-000248-zueoyesj 365 6 elements element NNS cord-000248-zueoyesj 365 7 to to IN cord-000248-zueoyesj 365 8 the the DT cord-000248-zueoyesj 365 9 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 365 10 [ [ -LRB- cord-000248-zueoyesj 365 11 173 173 CD cord-000248-zueoyesj 365 12 ] ] -RRB- cord-000248-zueoyesj 365 13 . . . cord-000248-zueoyesj 366 1 Plakophilin plakophilin JJ cord-000248-zueoyesj 366 2 1 1 CD cord-000248-zueoyesj 366 3 [ [ -LRB- cord-000248-zueoyesj 366 4 174 174 CD cord-000248-zueoyesj 366 5 ] ] -RRB- cord-000248-zueoyesj 366 6 ( ( -LRB- cord-000248-zueoyesj 366 7 PKP1 PKP1 NNP cord-000248-zueoyesj 366 8 , , , cord-000248-zueoyesj 366 9 one one CD cord-000248-zueoyesj 366 10 of of IN cord-000248-zueoyesj 366 11 the the DT cord-000248-zueoyesj 366 12 genes gene NNS cord-000248-zueoyesj 366 13 in in IN cord-000248-zueoyesj 366 14 our -PRON- PRP$ cord-000248-zueoyesj 366 15 panel panel NN cord-000248-zueoyesj 366 16 above above RB cord-000248-zueoyesj 366 17 ) ) -RRB- cord-000248-zueoyesj 366 18 is be VBZ cord-000248-zueoyesj 366 19 a a DT cord-000248-zueoyesj 366 20 desmosomal desmosomal JJ cord-000248-zueoyesj 366 21 plaque plaque NN cord-000248-zueoyesj 366 22 component component NN cord-000248-zueoyesj 366 23 [ [ -LRB- cord-000248-zueoyesj 366 24 175 175 CD cord-000248-zueoyesj 366 25 ] ] -RRB- cord-000248-zueoyesj 366 26 that that WDT cord-000248-zueoyesj 366 27 stabilizes stabilize VBZ cord-000248-zueoyesj 366 28 desmosomal desmosomal JJ cord-000248-zueoyesj 366 29 proteins protein NNS cord-000248-zueoyesj 366 30 at at IN cord-000248-zueoyesj 366 31 the the DT cord-000248-zueoyesj 366 32 plasma plasma NN cord-000248-zueoyesj 366 33 membrane membrane NN cord-000248-zueoyesj 366 34 [ [ -LRB- cord-000248-zueoyesj 366 35 176 176 CD cord-000248-zueoyesj 366 36 , , , cord-000248-zueoyesj 366 37 177 177 CD cord-000248-zueoyesj 366 38 ] ] -RRB- cord-000248-zueoyesj 367 1 and and CC cord-000248-zueoyesj 367 2 , , , cord-000248-zueoyesj 367 3 with with IN cord-000248-zueoyesj 367 4 desmoplakin desmoplakin NNP cord-000248-zueoyesj 367 5 [ [ -LRB- cord-000248-zueoyesj 367 6 178 178 CD cord-000248-zueoyesj 367 7 ] ] -RRB- cord-000248-zueoyesj 367 8 , , , cord-000248-zueoyesj 367 9 recruits recruit VBZ cord-000248-zueoyesj 367 10 filaments filament NNS cord-000248-zueoyesj 367 11 to to IN cord-000248-zueoyesj 367 12 sites site NNS cord-000248-zueoyesj 367 13 of of IN cord-000248-zueoyesj 367 14 cell cell NN cord-000248-zueoyesj 367 15 - - HYPH cord-000248-zueoyesj 367 16 cell cell NN cord-000248-zueoyesj 367 17 contacts contact NNS cord-000248-zueoyesj 367 18 [ [ -LRB- cord-000248-zueoyesj 367 19 179 179 CD cord-000248-zueoyesj 367 20 ] ] -RRB- cord-000248-zueoyesj 367 21 . . . cord-000248-zueoyesj 368 1 As as IN cord-000248-zueoyesj 368 2 a a DT cord-000248-zueoyesj 368 3 consequence consequence NN cord-000248-zueoyesj 368 4 , , , cord-000248-zueoyesj 368 5 it -PRON- PRP cord-000248-zueoyesj 368 6 has have VBZ cord-000248-zueoyesj 368 7 been be VBN cord-000248-zueoyesj 368 8 proposed propose VBN cord-000248-zueoyesj 368 9 that that IN cord-000248-zueoyesj 368 10 the the DT cord-000248-zueoyesj 368 11 lack lack NN cord-000248-zueoyesj 368 12 of of IN cord-000248-zueoyesj 368 13 PKP1 PKP1 NNP cord-000248-zueoyesj 368 14 increases increase VBZ cord-000248-zueoyesj 368 15 keratinocyte keratinocyte NNP cord-000248-zueoyesj 368 16 migration migration NN cord-000248-zueoyesj 368 17 [ [ -LRB- cord-000248-zueoyesj 368 18 180 180 CD cord-000248-zueoyesj 368 19 ] ] -RRB- cord-000248-zueoyesj 368 20 and and CC cord-000248-zueoyesj 368 21 loss loss NN cord-000248-zueoyesj 368 22 of of IN cord-000248-zueoyesj 368 23 PKP1 pkp1 JJ cord-000248-zueoyesj 368 24 expression expression NN cord-000248-zueoyesj 368 25 in in IN cord-000248-zueoyesj 368 26 head head NN cord-000248-zueoyesj 368 27 and and CC cord-000248-zueoyesj 368 28 neck neck NN cord-000248-zueoyesj 368 29 squamous squamous JJ cord-000248-zueoyesj 368 30 cell cell NN cord-000248-zueoyesj 368 31 carcinoma carcinoma NN cord-000248-zueoyesj 368 32 and and CC cord-000248-zueoyesj 368 33 in in IN cord-000248-zueoyesj 368 34 esophageal esophageal JJ cord-000248-zueoyesj 368 35 squamous squamous JJ cord-000248-zueoyesj 368 36 cell cell NN cord-000248-zueoyesj 368 37 carcinoma carcinoma NN cord-000248-zueoyesj 368 38 may may MD cord-000248-zueoyesj 368 39 contribute contribute VB cord-000248-zueoyesj 368 40 to to IN cord-000248-zueoyesj 368 41 an an DT cord-000248-zueoyesj 368 42 invasive invasive JJ cord-000248-zueoyesj 368 43 phenotypic phenotypic JJ cord-000248-zueoyesj 368 44 behaviour behaviour NN cord-000248-zueoyesj 368 45 [ [ -LRB- cord-000248-zueoyesj 368 46 171 171 CD cord-000248-zueoyesj 368 47 ] ] -RRB- cord-000248-zueoyesj 368 48 , , , cord-000248-zueoyesj 368 49 perhaps perhaps RB cord-000248-zueoyesj 368 50 as as IN cord-000248-zueoyesj 368 51 a a DT cord-000248-zueoyesj 368 52 consequence consequence NN cord-000248-zueoyesj 368 53 of of IN cord-000248-zueoyesj 368 54 the the DT cord-000248-zueoyesj 368 55 impaired impaired JJ cord-000248-zueoyesj 368 56 recruitment recruitment NN cord-000248-zueoyesj 368 57 of of IN cord-000248-zueoyesj 368 58 desmoplakin desmoplakin NNP cord-000248-zueoyesj 368 59 . . . cord-000248-zueoyesj 369 1 The the DT cord-000248-zueoyesj 369 2 desmoglein desmoglein NN cord-000248-zueoyesj 369 3 - - HYPH cord-000248-zueoyesj 369 4 specific specific JJ cord-000248-zueoyesj 369 5 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 369 6 region region NN cord-000248-zueoyesj 369 7 ( ( -LRB- cord-000248-zueoyesj 369 8 DSCR DSCR NNP cord-000248-zueoyesj 369 9 ) ) -RRB- cord-000248-zueoyesj 369 10 is be VBZ cord-000248-zueoyesj 369 11 the the DT cord-000248-zueoyesj 369 12 site site NN cord-000248-zueoyesj 369 13 of of IN cord-000248-zueoyesj 369 14 caspase caspase NN cord-000248-zueoyesj 369 15 cleavage cleavage NN cord-000248-zueoyesj 369 16 during during IN cord-000248-zueoyesj 369 17 apopotosis apopotosis NN cord-000248-zueoyesj 369 18 and and CC cord-000248-zueoyesj 369 19 is be VBZ cord-000248-zueoyesj 369 20 a a DT cord-000248-zueoyesj 369 21 conserved conserved JJ cord-000248-zueoyesj 369 22 region region NN cord-000248-zueoyesj 369 23 of of IN cord-000248-zueoyesj 369 24 yet yet RB cord-000248-zueoyesj 369 25 undefined undefined JJ cord-000248-zueoyesj 369 26 function function NN cord-000248-zueoyesj 369 27 and and CC cord-000248-zueoyesj 369 28 unknown unknown JJ cord-000248-zueoyesj 369 29 structure structure NN cord-000248-zueoyesj 369 30 , , , cord-000248-zueoyesj 369 31 but but CC cord-000248-zueoyesj 369 32 it -PRON- PRP cord-000248-zueoyesj 369 33 specifies specify VBZ cord-000248-zueoyesj 369 34 the the DT cord-000248-zueoyesj 369 35 function function NN cord-000248-zueoyesj 369 36 of of IN cord-000248-zueoyesj 369 37 the the DT cord-000248-zueoyesj 369 38 desmoglein desmoglein NNP cord-000248-zueoyesj 369 39 family family NN cord-000248-zueoyesj 369 40 of of IN cord-000248-zueoyesj 369 41 cell cell NN cord-000248-zueoyesj 369 42 adhesion adhesion NN cord-000248-zueoyesj 369 43 molecules molecule NNS cord-000248-zueoyesj 369 44 ( ( -LRB- cord-000248-zueoyesj 369 45 of of IN cord-000248-zueoyesj 369 46 which which WDT cord-000248-zueoyesj 369 47 DSG DSG NNP cord-000248-zueoyesj 369 48 1 1 CD cord-000248-zueoyesj 369 49 is be VBZ cord-000248-zueoyesj 369 50 a a DT cord-000248-zueoyesj 369 51 member member NN cord-000248-zueoyesj 369 52 ) ) -RRB- cord-000248-zueoyesj 369 53 . . . cord-000248-zueoyesj 370 1 It -PRON- PRP cord-000248-zueoyesj 370 2 has have VBZ cord-000248-zueoyesj 370 3 been be VBN cord-000248-zueoyesj 370 4 recently recently RB cord-000248-zueoyesj 370 5 shown show VBN cord-000248-zueoyesj 370 6 that that IN cord-000248-zueoyesj 370 7 the the DT cord-000248-zueoyesj 370 8 DSCR DSCR NNP cord-000248-zueoyesj 370 9 has have VBZ cord-000248-zueoyesj 370 10 a a DT cord-000248-zueoyesj 370 11 weak weak JJ cord-000248-zueoyesj 370 12 interaction interaction NN cord-000248-zueoyesj 370 13 with with IN cord-000248-zueoyesj 370 14 PKP1 PKP1 NNP cord-000248-zueoyesj 370 15 , , , cord-000248-zueoyesj 370 16 Plakophilin Plakophilin NNP cord-000248-zueoyesj 370 17 1 1 CD cord-000248-zueoyesj 370 18 ( ( -LRB- cord-000248-zueoyesj 370 19 ectodermal ectodermal JJ cord-000248-zueoyesj 370 20 dysplasia dysplasia NN cord-000248-zueoyesj 370 21 / / SYM cord-000248-zueoyesj 370 22 skin skin NN cord-000248-zueoyesj 370 23 fragility fragility NN cord-000248-zueoyesj 370 24 syndrome syndrome NN cord-000248-zueoyesj 370 25 ) ) -RRB- cord-000248-zueoyesj 370 26 and and CC cord-000248-zueoyesj 370 27 the the DT cord-000248-zueoyesj 370 28 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 370 29 domain domain NN cord-000248-zueoyesj 370 30 of of IN cord-000248-zueoyesj 370 31 Desmocollin Desmocollin NNP cord-000248-zueoyesj 370 32 1 1 CD cord-000248-zueoyesj 370 33 [ [ -LRB- cord-000248-zueoyesj 370 34 181 181 CD cord-000248-zueoyesj 370 35 ] ] -RRB- cord-000248-zueoyesj 370 36 . . . cord-000248-zueoyesj 371 1 Plakoglobin Plakoglobin NNP cord-000248-zueoyesj 371 2 is be VBZ cord-000248-zueoyesj 371 3 cleaved cleave VBN cord-000248-zueoyesj 371 4 by by IN cord-000248-zueoyesj 371 5 Caspase Caspase NNP cord-000248-zueoyesj 371 6 3 3 CD cord-000248-zueoyesj 371 7 during during IN cord-000248-zueoyesj 371 8 apoptosis apoptosis NN cord-000248-zueoyesj 371 9 [ [ -LRB- cord-000248-zueoyesj 371 10 182 182 CD cord-000248-zueoyesj 371 11 ] ] -RRB- cord-000248-zueoyesj 371 12 . . . cord-000248-zueoyesj 372 1 In in IN cord-000248-zueoyesj 372 2 addition addition NN cord-000248-zueoyesj 372 3 , , , cord-000248-zueoyesj 372 4 Kami Kami NNP cord-000248-zueoyesj 372 5 et et NNP cord-000248-zueoyesj 372 6 al al NNP cord-000248-zueoyesj 372 7 . . . cord-000248-zueoyesj 373 1 in in IN cord-000248-zueoyesj 373 2 Ref ref NN cord-000248-zueoyesj 373 3 [ [ -LRB- cord-000248-zueoyesj 373 4 181 181 CD cord-000248-zueoyesj 373 5 ] ] -RRB- cord-000248-zueoyesj 373 6 also also RB cord-000248-zueoyesj 373 7 report report VBP cord-000248-zueoyesj 373 8 and and CC cord-000248-zueoyesj 373 9 conclude conclude VBP cord-000248-zueoyesj 373 10 that that DT cord-000248-zueoyesj 373 11 : : : cord-000248-zueoyesj 373 12 ' ' '' cord-000248-zueoyesj 373 13 ' ' '' cord-000248-zueoyesj 373 14 desmoglein desmoglein NNP cord-000248-zueoyesj 373 15 1 1 CD cord-000248-zueoyesj 373 16 membrane membrane NN cord-000248-zueoyesj 373 17 proximal proximal JJ cord-000248-zueoyesj 373 18 region region NN cord-000248-zueoyesj 373 19 also also RB cord-000248-zueoyesj 373 20 interacts interact VBZ cord-000248-zueoyesj 373 21 with with IN cord-000248-zueoyesj 373 22 all all DT cord-000248-zueoyesj 373 23 four four CD cord-000248-zueoyesj 373 24 DSCR DSCR NNP cord-000248-zueoyesj 373 25 ligands ligand NNS cord-000248-zueoyesj 373 26 , , , cord-000248-zueoyesj 373 27 strongly strongly RB cord-000248-zueoyesj 373 28 with with IN cord-000248-zueoyesj 373 29 plakoglobin plakoglobin NNP cord-000248-zueoyesj 373 30 and and CC cord-000248-zueoyesj 373 31 plakophilin plakophilin NNP cord-000248-zueoyesj 373 32 and and CC cord-000248-zueoyesj 373 33 more more RBR cord-000248-zueoyesj 373 34 weakly weakly RB cord-000248-zueoyesj 373 35 with with IN cord-000248-zueoyesj 373 36 desmoplakin desmoplakin NNP cord-000248-zueoyesj 373 37 and and CC cord-000248-zueoyesj 373 38 desmocollin desmocollin NNP cord-000248-zueoyesj 373 39 1 1 CD cord-000248-zueoyesj 373 40 . . . cord-000248-zueoyesj 374 1 Thus thus RB cord-000248-zueoyesj 374 2 , , , cord-000248-zueoyesj 374 3 the the DT cord-000248-zueoyesj 374 4 DSCR DSCR NNP cord-000248-zueoyesj 374 5 is be VBZ cord-000248-zueoyesj 374 6 an an DT cord-000248-zueoyesj 374 7 intrinsically intrinsically RB cord-000248-zueoyesj 374 8 disordered disordered JJ cord-000248-zueoyesj 374 9 functional functional JJ cord-000248-zueoyesj 374 10 domain domain NN cord-000248-zueoyesj 374 11 with with IN cord-000248-zueoyesj 374 12 an an DT cord-000248-zueoyesj 374 13 inducible inducible JJ cord-000248-zueoyesj 374 14 structure structure NN cord-000248-zueoyesj 374 15 that that IN cord-000248-zueoyesj 374 16 , , , cord-000248-zueoyesj 374 17 along along IN cord-000248-zueoyesj 374 18 with with IN cord-000248-zueoyesj 374 19 the the DT cord-000248-zueoyesj 374 20 membrane membrane NN cord-000248-zueoyesj 374 21 proximal proximal JJ cord-000248-zueoyesj 374 22 region region NN cord-000248-zueoyesj 374 23 , , , cord-000248-zueoyesj 374 24 forms form VBZ cord-000248-zueoyesj 374 25 a a DT cord-000248-zueoyesj 374 26 flexible flexible JJ cord-000248-zueoyesj 374 27 scaffold scaffold NN cord-000248-zueoyesj 374 28 for for IN cord-000248-zueoyesj 374 29 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 374 30 assembly assembly NN cord-000248-zueoyesj 374 31 at at IN cord-000248-zueoyesj 374 32 the the DT cord-000248-zueoyesj 374 33 desmosome desmosome NN cord-000248-zueoyesj 374 34 ' ' '' cord-000248-zueoyesj 374 35 ' ' '' cord-000248-zueoyesj 374 36 . . . cord-000248-zueoyesj 375 1 As as IN cord-000248-zueoyesj 375 2 previously previously RB cord-000248-zueoyesj 375 3 discussed discuss VBN cord-000248-zueoyesj 375 4 , , , cord-000248-zueoyesj 375 5 all all PDT cord-000248-zueoyesj 375 6 these these DT cord-000248-zueoyesj 375 7 genes gene NNS cord-000248-zueoyesj 375 8 progress progress VBP cord-000248-zueoyesj 375 9 towards towards IN cord-000248-zueoyesj 375 10 a a DT cord-000248-zueoyesj 375 11 loss loss NN cord-000248-zueoyesj 375 12 of of IN cord-000248-zueoyesj 375 13 expression expression NN cord-000248-zueoyesj 375 14 , , , cord-000248-zueoyesj 375 15 and and CC cord-000248-zueoyesj 375 16 they -PRON- PRP cord-000248-zueoyesj 375 17 are be VBP cord-000248-zueoyesj 375 18 highly highly RB cord-000248-zueoyesj 375 19 correlated correlate VBN cord-000248-zueoyesj 375 20 . . . cord-000248-zueoyesj 376 1 Figure figure NN cord-000248-zueoyesj 376 2 9 9 CD cord-000248-zueoyesj 376 3 shows show VBZ cord-000248-zueoyesj 376 4 the the DT cord-000248-zueoyesj 376 5 average average JJ cord-000248-zueoyesj 376 6 expression expression NN cord-000248-zueoyesj 376 7 of of IN cord-000248-zueoyesj 376 8 PKP1 PKP1 NNP cord-000248-zueoyesj 376 9 / / SYM cord-000248-zueoyesj 376 10 Plakophilin Plakophilin NNP cord-000248-zueoyesj 376 11 1 1 CD cord-000248-zueoyesj 376 12 ( ( -LRB- cord-000248-zueoyesj 376 13 ectodermal ectodermal NNS cord-000248-zueoyesj 376 14 dysplasia/ dysplasia/ CD cord-000248-zueoyesj 376 15 skin skin NN cord-000248-zueoyesj 376 16 fragility fragility NN cord-000248-zueoyesj 376 17 syndrome syndrome NN cord-000248-zueoyesj 376 18 ) ) -RRB- cord-000248-zueoyesj 376 19 , , , cord-000248-zueoyesj 376 20 ( ( -LRB- cord-000248-zueoyesj 376 21 NM_000299 NM_000299 NNP cord-000248-zueoyesj 376 22 ) ) -RRB- cord-000248-zueoyesj 376 23 and and CC cord-000248-zueoyesj 376 24 JUP JUP NNP cord-000248-zueoyesj 376 25 , , , cord-000248-zueoyesj 376 26 Junction Junction NNP cord-000248-zueoyesj 376 27 plakoglobin plakoglobin NNP cord-000248-zueoyesj 376 28 , , , cord-000248-zueoyesj 376 29 ( ( -LRB- cord-000248-zueoyesj 376 30 BX648177 bx648177 NN cord-000248-zueoyesj 376 31 ) ) -RRB- cord-000248-zueoyesj 376 32 on on IN cord-000248-zueoyesj 376 33 the the DT cord-000248-zueoyesj 376 34 x x NN cord-000248-zueoyesj 376 35 - - HYPH cord-000248-zueoyesj 376 36 axis axis NN cord-000248-zueoyesj 376 37 against against IN cord-000248-zueoyesj 376 38 that that DT cord-000248-zueoyesj 376 39 of of IN cord-000248-zueoyesj 376 40 DSP DSP NNP cord-000248-zueoyesj 376 41 , , , cord-000248-zueoyesj 376 42 Desmoplakin Desmoplakin NNP cord-000248-zueoyesj 376 43 ( ( -LRB- cord-000248-zueoyesj 376 44 NM_004415 NM_004415 NNP cord-000248-zueoyesj 376 45 Hs.519873 hs.519873 NN cord-000248-zueoyesj 376 46 ) ) -RRB- cord-000248-zueoyesj 376 47 on on IN cord-000248-zueoyesj 376 48 the the DT cord-000248-zueoyesj 376 49 y y NN cord-000248-zueoyesj 376 50 - - HYPH cord-000248-zueoyesj 376 51 axis axis NN cord-000248-zueoyesj 376 52 . . . cord-000248-zueoyesj 377 1 Again again RB cord-000248-zueoyesj 377 2 , , , cord-000248-zueoyesj 377 3 we -PRON- PRP cord-000248-zueoyesj 377 4 see see VBP cord-000248-zueoyesj 377 5 a a DT cord-000248-zueoyesj 377 6 clear clear JJ cord-000248-zueoyesj 377 7 pattern pattern NN cord-000248-zueoyesj 377 8 of of IN cord-000248-zueoyesj 377 9 progressive progressive JJ cord-000248-zueoyesj 377 10 reduction reduction NN cord-000248-zueoyesj 377 11 of of IN cord-000248-zueoyesj 377 12 expression expression NN cord-000248-zueoyesj 377 13 from from IN cord-000248-zueoyesj 377 14 normal normal JJ cord-000248-zueoyesj 377 15 skin skin NN cord-000248-zueoyesj 377 16 and and CC cord-000248-zueoyesj 377 17 nevi nevus NNS cord-000248-zueoyesj 377 18 ( ( -LRB- cord-000248-zueoyesj 377 19 green green JJ cord-000248-zueoyesj 377 20 and and CC cord-000248-zueoyesj 377 21 yellow yellow JJ cord-000248-zueoyesj 377 22 , , , cord-000248-zueoyesj 377 23 respectively respectively RB cord-000248-zueoyesj 377 24 ) ) -RRB- cord-000248-zueoyesj 377 25 , , , cord-000248-zueoyesj 377 26 primary primary JJ cord-000248-zueoyesj 377 27 melanomas melanoma NNS cord-000248-zueoyesj 377 28 ( ( -LRB- cord-000248-zueoyesj 377 29 in in IN cord-000248-zueoyesj 377 30 orange orange NN cord-000248-zueoyesj 377 31 ) ) -RRB- cord-000248-zueoyesj 377 32 and and CC cord-000248-zueoyesj 377 33 melanoma melanoma NN cord-000248-zueoyesj 377 34 metastases metastasis NNS cord-000248-zueoyesj 377 35 ( ( -LRB- cord-000248-zueoyesj 377 36 red red JJ cord-000248-zueoyesj 377 37 ) ) -RRB- cord-000248-zueoyesj 377 38 . . . cord-000248-zueoyesj 378 1 Joint joint JJ cord-000248-zueoyesj 378 2 loss loss NN cord-000248-zueoyesj 378 3 of of IN cord-000248-zueoyesj 378 4 expression expression NN cord-000248-zueoyesj 378 5 of of IN cord-000248-zueoyesj 378 6 Claudin Claudin NNP cord-000248-zueoyesj 378 7 1 1 CD cord-000248-zueoyesj 378 8 and and CC cord-000248-zueoyesj 378 9 members member NNS cord-000248-zueoyesj 378 10 of of IN cord-000248-zueoyesj 378 11 the the DT cord-000248-zueoyesj 378 12 Aquaporin Aquaporin NNP cord-000248-zueoyesj 378 13 family family NN cord-000248-zueoyesj 378 14 are be VBP cord-000248-zueoyesj 378 15 also also RB cord-000248-zueoyesj 378 16 linked link VBN cord-000248-zueoyesj 378 17 to to IN cord-000248-zueoyesj 378 18 a a DT cord-000248-zueoyesj 378 19 transition transition NN cord-000248-zueoyesj 378 20 to to IN cord-000248-zueoyesj 378 21 a a DT cord-000248-zueoyesj 378 22 more more RBR cord-000248-zueoyesj 378 23 malignant malignant JJ cord-000248-zueoyesj 378 24 phenotype phenotype NN cord-000248-zueoyesj 378 25 We -PRON- PRP cord-000248-zueoyesj 378 26 note note VBP cord-000248-zueoyesj 378 27 however however RB cord-000248-zueoyesj 378 28 , , , cord-000248-zueoyesj 378 29 the the DT cord-000248-zueoyesj 378 30 Gene Gene NNP cord-000248-zueoyesj 378 31 Ontology Ontology NNP cord-000248-zueoyesj 378 32 annotation annotation NN cord-000248-zueoyesj 378 33 is be VBZ cord-000248-zueoyesj 378 34 not not RB cord-000248-zueoyesj 378 35 the the DT cord-000248-zueoyesj 378 36 only only JJ cord-000248-zueoyesj 378 37 way way NN cord-000248-zueoyesj 378 38 that that WDT cord-000248-zueoyesj 378 39 we -PRON- PRP cord-000248-zueoyesj 378 40 can can MD cord-000248-zueoyesj 378 41 make make VB cord-000248-zueoyesj 378 42 sense sense NN cord-000248-zueoyesj 378 43 of of IN cord-000248-zueoyesj 378 44 this this DT cord-000248-zueoyesj 378 45 information information NN cord-000248-zueoyesj 378 46 . . . cord-000248-zueoyesj 379 1 A a DT cord-000248-zueoyesj 379 2 detailed detailed JJ cord-000248-zueoyesj 379 3 analysis analysis NN cord-000248-zueoyesj 379 4 of of IN cord-000248-zueoyesj 379 5 that that DT cord-000248-zueoyesj 379 6 list list NN cord-000248-zueoyesj 379 7 of of IN cord-000248-zueoyesj 379 8 58 58 CD cord-000248-zueoyesj 379 9 genes gene NNS cord-000248-zueoyesj 379 10 reveals reveal VBZ cord-000248-zueoyesj 379 11 other other JJ cord-000248-zueoyesj 379 12 proteins protein NNS cord-000248-zueoyesj 379 13 involved involve VBN cord-000248-zueoyesj 379 14 in in IN cord-000248-zueoyesj 379 15 tight tight JJ cord-000248-zueoyesj 379 16 junction junction NN cord-000248-zueoyesj 379 17 , , , cord-000248-zueoyesj 379 18 like like IN cord-000248-zueoyesj 379 19 Aquaporin Aquaporin NNP cord-000248-zueoyesj 379 20 3 3 CD cord-000248-zueoyesj 379 21 ( ( -LRB- cord-000248-zueoyesj 379 22 AQP3 AQP3 NNP cord-000248-zueoyesj 379 23 ) ) -RRB- cord-000248-zueoyesj 379 24 . . . cord-000248-zueoyesj 380 1 Probes probe NNS cord-000248-zueoyesj 380 2 for for IN cord-000248-zueoyesj 380 3 AQP3 AQP3 NNP cord-000248-zueoyesj 380 4 and and CC cord-000248-zueoyesj 380 5 Claudin Claudin NNP cord-000248-zueoyesj 380 6 1 1 CD cord-000248-zueoyesj 380 7 ( ( -LRB- cord-000248-zueoyesj 380 8 CLDN1 CLDN1 NNP cord-000248-zueoyesj 380 9 ) ) -RRB- cord-000248-zueoyesj 380 10 have have VBP cord-000248-zueoyesj 380 11 reduced reduce VBN cord-000248-zueoyesj 380 12 expression expression NN cord-000248-zueoyesj 380 13 with with IN cord-000248-zueoyesj 380 14 the the DT cord-000248-zueoyesj 380 15 progression progression NN cord-000248-zueoyesj 380 16 of of IN cord-000248-zueoyesj 380 17 the the DT cord-000248-zueoyesj 380 18 disease disease NN cord-000248-zueoyesj 380 19 as as IN cord-000248-zueoyesj 380 20 shown show VBN cord-000248-zueoyesj 380 21 in in IN cord-000248-zueoyesj 380 22 Figure Figure NNP cord-000248-zueoyesj 380 23 10 10 CD cord-000248-zueoyesj 380 24 . . . cord-000248-zueoyesj 381 1 AQP3 AQP3 NNP cord-000248-zueoyesj 382 1 ( ( -LRB- cord-000248-zueoyesj 382 2 Gill Gill NNP cord-000248-zueoyesj 382 3 blood blood NN cord-000248-zueoyesj 382 4 group group NN cord-000248-zueoyesj 382 5 ) ) -RRB- cord-000248-zueoyesj 382 6 is be VBZ cord-000248-zueoyesj 382 7 a a DT cord-000248-zueoyesj 382 8 member member NN cord-000248-zueoyesj 382 9 of of IN cord-000248-zueoyesj 382 10 the the DT cord-000248-zueoyesj 382 11 aquaporin aquaporin NNP cord-000248-zueoyesj 382 12 family family NN cord-000248-zueoyesj 382 13 of of IN cord-000248-zueoyesj 382 14 proteins protein NNS cord-000248-zueoyesj 382 15 , , , cord-000248-zueoyesj 382 16 and and CC cord-000248-zueoyesj 382 17 currently currently RB cord-000248-zueoyesj 382 18 is be VBZ cord-000248-zueoyesj 382 19 recognized recognize VBN cord-000248-zueoyesj 382 20 as as IN cord-000248-zueoyesj 382 21 an an DT cord-000248-zueoyesj 382 22 ' ' `` cord-000248-zueoyesj 382 23 aquaglyceroporin aquaglyceroporin FW cord-000248-zueoyesj 382 24 ' ' '' cord-000248-zueoyesj 382 25 [ [ -LRB- cord-000248-zueoyesj 382 26 183 183 CD cord-000248-zueoyesj 382 27 ] ] -RRB- cord-000248-zueoyesj 382 28 of of IN cord-000248-zueoyesj 382 29 great great JJ cord-000248-zueoyesj 382 30 importance importance NN cord-000248-zueoyesj 382 31 to to TO cord-000248-zueoyesj 382 32 maintain maintain VB cord-000248-zueoyesj 382 33 skin skin NN cord-000248-zueoyesj 382 34 hydration hydration NN cord-000248-zueoyesj 382 35 of of IN cord-000248-zueoyesj 382 36 mammals mammal NNS cord-000248-zueoyesj 382 37 epidermis epidermi NNS cord-000248-zueoyesj 382 38 [ [ -LRB- cord-000248-zueoyesj 382 39 184 184 CD cord-000248-zueoyesj 382 40 ] ] -RRB- cord-000248-zueoyesj 382 41 . . . cord-000248-zueoyesj 383 1 Three three CD cord-000248-zueoyesj 383 2 proteins protein NNS cord-000248-zueoyesj 383 3 of of IN cord-000248-zueoyesj 383 4 this this DT cord-000248-zueoyesj 383 5 family family NN cord-000248-zueoyesj 383 6 ( ( -LRB- cord-000248-zueoyesj 383 7 AQP1 AQP1 NNP cord-000248-zueoyesj 383 8 , , , cord-000248-zueoyesj 383 9 AQP3 AQP3 NNP cord-000248-zueoyesj 383 10 , , , cord-000248-zueoyesj 383 11 and and CC cord-000248-zueoyesj 383 12 AQP9 AQP9 NNP cord-000248-zueoyesj 383 13 ) ) -RRB- cord-000248-zueoyesj 383 14 have have VBP cord-000248-zueoyesj 383 15 probes probe NNS cord-000248-zueoyesj 383 16 that that WDT cord-000248-zueoyesj 383 17 seem seem VBP cord-000248-zueoyesj 383 18 correlated correlate VBN cord-000248-zueoyesj 383 19 with with IN cord-000248-zueoyesj 383 20 melanoma melanoma NN cord-000248-zueoyesj 383 21 progression progression NN cord-000248-zueoyesj 383 22 , , , cord-000248-zueoyesj 383 23 all all DT cord-000248-zueoyesj 383 24 losing lose VBG cord-000248-zueoyesj 383 25 their -PRON- PRP$ cord-000248-zueoyesj 383 26 expression expression NN cord-000248-zueoyesj 383 27 in in IN cord-000248-zueoyesj 383 28 the the DT cord-000248-zueoyesj 383 29 process process NN cord-000248-zueoyesj 383 30 of of IN cord-000248-zueoyesj 383 31 going go VBG cord-000248-zueoyesj 383 32 from from IN cord-000248-zueoyesj 383 33 normal normal JJ cord-000248-zueoyesj 383 34 skin skin NN cord-000248-zueoyesj 383 35 to to IN cord-000248-zueoyesj 383 36 metastatic metastatic JJ cord-000248-zueoyesj 383 37 melanoma melanoma NN cord-000248-zueoyesj 383 38 . . . cord-000248-zueoyesj 384 1 AQP3 AQP3 NNP cord-000248-zueoyesj 384 2 water water NN cord-000248-zueoyesj 384 3 channels channel NNS cord-000248-zueoyesj 384 4 have have VBP cord-000248-zueoyesj 384 5 been be VBN cord-000248-zueoyesj 384 6 pointed point VBN cord-000248-zueoyesj 384 7 out out RP cord-000248-zueoyesj 384 8 as as IN cord-000248-zueoyesj 384 9 an an DT cord-000248-zueoyesj 384 10 essential essential JJ cord-000248-zueoyesj 384 11 pathway pathway NN cord-000248-zueoyesj 384 12 for for IN cord-000248-zueoyesj 384 13 volume volume NN cord-000248-zueoyesj 384 14 - - HYPH cord-000248-zueoyesj 384 15 regulatory regulatory JJ cord-000248-zueoyesj 384 16 water water NN cord-000248-zueoyesj 384 17 transport transport NN cord-000248-zueoyesj 384 18 in in IN cord-000248-zueoyesj 384 19 human human JJ cord-000248-zueoyesj 384 20 epithelial epithelial JJ cord-000248-zueoyesj 384 21 cells cell NNS cord-000248-zueoyesj 384 22 [ [ -LRB- cord-000248-zueoyesj 384 23 185 185 CD cord-000248-zueoyesj 384 24 ] ] -RRB- cord-000248-zueoyesj 384 25 . . . cord-000248-zueoyesj 385 1 AQP3 AQP3 NNP cord-000248-zueoyesj 385 2 is be VBZ cord-000248-zueoyesj 385 3 also also RB cord-000248-zueoyesj 385 4 selective selective JJ cord-000248-zueoyesj 385 5 for for IN cord-000248-zueoyesj 385 6 the the DT cord-000248-zueoyesj 385 7 passage passage NN cord-000248-zueoyesj 385 8 of of IN cord-000248-zueoyesj 385 9 glycerol glycerol NN cord-000248-zueoyesj 385 10 and and CC cord-000248-zueoyesj 385 11 urea urea NN cord-000248-zueoyesj 385 12 and and CC cord-000248-zueoyesj 385 13 it -PRON- PRP cord-000248-zueoyesj 385 14 has have VBZ cord-000248-zueoyesj 385 15 been be VBN cord-000248-zueoyesj 385 16 suggested suggest VBN cord-000248-zueoyesj 385 17 that that IN cord-000248-zueoyesj 385 18 osmotic osmotic JJ cord-000248-zueoyesj 385 19 stress stress NN cord-000248-zueoyesj 385 20 up up RB cord-000248-zueoyesj 385 21 - - HYPH cord-000248-zueoyesj 385 22 regulates regulate VBZ cord-000248-zueoyesj 385 23 AQP3 AQP3 NNP cord-000248-zueoyesj 385 24 gene gene NN cord-000248-zueoyesj 385 25 expression expression NN cord-000248-zueoyesj 385 26 in in IN cord-000248-zueoyesj 385 27 cultured cultured JJ cord-000248-zueoyesj 385 28 keratinocytes keratinocyte NNS cord-000248-zueoyesj 385 29 [ [ -LRB- cord-000248-zueoyesj 385 30 186 186 CD cord-000248-zueoyesj 385 31 ] ] -RRB- cord-000248-zueoyesj 385 32 . . . cord-000248-zueoyesj 386 1 AQP3 AQP3 NNP cord-000248-zueoyesj 386 2 was be VBD cord-000248-zueoyesj 386 3 found find VBN cord-000248-zueoyesj 386 4 to to TO cord-000248-zueoyesj 386 5 be be VB cord-000248-zueoyesj 386 6 the the DT cord-000248-zueoyesj 386 7 predominant predominant JJ cord-000248-zueoyesj 386 8 aquaporin aquaporin NN cord-000248-zueoyesj 386 9 in in IN cord-000248-zueoyesj 386 10 human human JJ cord-000248-zueoyesj 386 11 skin skin NN cord-000248-zueoyesj 386 12 which which WDT cord-000248-zueoyesj 386 13 increased increase VBD cord-000248-zueoyesj 386 14 expression expression NN cord-000248-zueoyesj 386 15 and and CC cord-000248-zueoyesj 386 16 altered alter VBN cord-000248-zueoyesj 386 17 cellular cellular JJ cord-000248-zueoyesj 386 18 distribution distribution NN cord-000248-zueoyesj 386 19 of of IN cord-000248-zueoyesj 386 20 AQP3 AQP3 NNP cord-000248-zueoyesj 386 21 in in IN cord-000248-zueoyesj 386 22 eczema eczema NN cord-000248-zueoyesj 386 23 thus thus RB cord-000248-zueoyesj 386 24 contributing contribute VBG cord-000248-zueoyesj 386 25 to to IN cord-000248-zueoyesj 386 26 water water NN cord-000248-zueoyesj 386 27 loss loss NN cord-000248-zueoyesj 386 28 [ [ -LRB- cord-000248-zueoyesj 386 29 187 187 CD cord-000248-zueoyesj 386 30 ] ] -RRB- cord-000248-zueoyesj 386 31 . . . cord-000248-zueoyesj 387 1 The the DT cord-000248-zueoyesj 387 2 putative putative JJ cord-000248-zueoyesj 387 3 involvement involvement NN cord-000248-zueoyesj 387 4 of of IN cord-000248-zueoyesj 387 5 aquaporins aquaporin NNS cord-000248-zueoyesj 387 6 in in IN cord-000248-zueoyesj 387 7 the the DT cord-000248-zueoyesj 387 8 progression progression NN cord-000248-zueoyesj 387 9 of of IN cord-000248-zueoyesj 387 10 melanoma melanoma NN cord-000248-zueoyesj 387 11 , , , cord-000248-zueoyesj 387 12 uncovered uncover VBN cord-000248-zueoyesj 387 13 by by IN cord-000248-zueoyesj 387 14 our -PRON- PRP$ cord-000248-zueoyesj 387 15 method method NN cord-000248-zueoyesj 387 16 in in IN cord-000248-zueoyesj 387 17 our -PRON- PRP$ cord-000248-zueoyesj 387 18 results result NNS cord-000248-zueoyesj 387 19 , , , cord-000248-zueoyesj 387 20 warrants warrant NNS cord-000248-zueoyesj 387 21 further further JJ cord-000248-zueoyesj 387 22 investigation investigation NN cord-000248-zueoyesj 387 23 as as IN cord-000248-zueoyesj 387 24 it -PRON- PRP cord-000248-zueoyesj 387 25 has have VBZ cord-000248-zueoyesj 387 26 been be VBN cord-000248-zueoyesj 387 27 recently recently RB cord-000248-zueoyesj 387 28 shown show VBN cord-000248-zueoyesj 387 29 that that IN cord-000248-zueoyesj 387 30 another another DT cord-000248-zueoyesj 387 31 member member NN cord-000248-zueoyesj 387 32 of of IN cord-000248-zueoyesj 387 33 this this DT cord-000248-zueoyesj 387 34 family family NN cord-000248-zueoyesj 387 35 ( ( -LRB- cord-000248-zueoyesj 387 36 AQP8 AQP8 NNP cord-000248-zueoyesj 387 37 ) ) -RRB- cord-000248-zueoyesj 387 38 also also RB cord-000248-zueoyesj 387 39 facilitates facilitate VBZ cord-000248-zueoyesj 387 40 hydrogen hydrogen NN cord-000248-zueoyesj 387 41 peroxide peroxide NN cord-000248-zueoyesj 387 42 diffusion diffusion NN cord-000248-zueoyesj 387 43 across across IN cord-000248-zueoyesj 387 44 membranes membrane NNS cord-000248-zueoyesj 387 45 [ [ -LRB- cord-000248-zueoyesj 387 46 188 188 CD cord-000248-zueoyesj 387 47 ] ] -RRB- cord-000248-zueoyesj 387 48 . . . cord-000248-zueoyesj 388 1 It -PRON- PRP cord-000248-zueoyesj 388 2 is be VBZ cord-000248-zueoyesj 388 3 suspected suspect VBN cord-000248-zueoyesj 388 4 that that IN cord-000248-zueoyesj 388 5 AQP3 AQP3 NNP cord-000248-zueoyesj 388 6 has have VBZ cord-000248-zueoyesj 388 7 other other JJ cord-000248-zueoyesj 388 8 functions function NNS cord-000248-zueoyesj 388 9 with with IN cord-000248-zueoyesj 388 10 a a DT cord-000248-zueoyesj 388 11 suggestion suggestion NN cord-000248-zueoyesj 388 12 that that IN cord-000248-zueoyesj 388 13 it -PRON- PRP cord-000248-zueoyesj 388 14 is be VBZ cord-000248-zueoyesj 388 15 involved involve VBN cord-000248-zueoyesj 388 16 in in IN cord-000248-zueoyesj 388 17 ultraviolet ultraviolet JJ cord-000248-zueoyesj 388 18 radiation radiation NN cord-000248-zueoyesj 388 19 induced induce VBD cord-000248-zueoyesj 388 20 skin skin NN cord-000248-zueoyesj 388 21 dehydration dehydration NN cord-000248-zueoyesj 388 22 [ [ -LRB- cord-000248-zueoyesj 388 23 189 189 CD cord-000248-zueoyesj 388 24 ] ] -RRB- cord-000248-zueoyesj 388 25 . . . cord-000248-zueoyesj 389 1 There there EX cord-000248-zueoyesj 389 2 is be VBZ cord-000248-zueoyesj 389 3 no no DT cord-000248-zueoyesj 389 4 probe probe NN cord-000248-zueoyesj 389 5 for for IN cord-000248-zueoyesj 389 6 AQP8 AQP8 NNP cord-000248-zueoyesj 389 7 in in IN cord-000248-zueoyesj 389 8 Haqq Haqq NNP cord-000248-zueoyesj 389 9 et et NNP cord-000248-zueoyesj 389 10 al al NNP cord-000248-zueoyesj 389 11 . . NNP cord-000248-zueoyesj 389 12 's 's POS cord-000248-zueoyesj 389 13 dataset dataset NN cord-000248-zueoyesj 389 14 that that IN cord-000248-zueoyesj 389 15 we -PRON- PRP cord-000248-zueoyesj 389 16 could could MD cord-000248-zueoyesj 389 17 scrutinize scrutinize VB cord-000248-zueoyesj 389 18 from from IN cord-000248-zueoyesj 389 19 its -PRON- PRP$ cord-000248-zueoyesj 389 20 trend trend NN cord-000248-zueoyesj 389 21 with with IN cord-000248-zueoyesj 389 22 progression progression NN cord-000248-zueoyesj 389 23 but but CC cord-000248-zueoyesj 389 24 we -PRON- PRP cord-000248-zueoyesj 389 25 note note VBP cord-000248-zueoyesj 389 26 that that IN cord-000248-zueoyesj 389 27 a a DT cord-000248-zueoyesj 389 28 novel novel JJ cord-000248-zueoyesj 389 29 strategy strategy NN cord-000248-zueoyesj 389 30 for for IN cord-000248-zueoyesj 389 31 drug drug NN cord-000248-zueoyesj 389 32 development development NN cord-000248-zueoyesj 389 33 for for IN cord-000248-zueoyesj 389 34 melanoma melanoma NN cord-000248-zueoyesj 389 35 ( ( -LRB- cord-000248-zueoyesj 389 36 i.e. i.e. FW cord-000248-zueoyesj 389 37 Elesclomol Elesclomol NNP cord-000248-zueoyesj 389 38 ) ) -RRB- cord-000248-zueoyesj 389 39 works work VBZ cord-000248-zueoyesj 389 40 by by IN cord-000248-zueoyesj 389 41 inducing induce VBG cord-000248-zueoyesj 389 42 apoptosis apoptosis NN cord-000248-zueoyesj 389 43 via via IN cord-000248-zueoyesj 389 44 a a DT cord-000248-zueoyesj 389 45 mechanism mechanism NN cord-000248-zueoyesj 389 46 of of IN cord-000248-zueoyesj 389 47 elevation elevation NN cord-000248-zueoyesj 389 48 of of IN cord-000248-zueoyesj 389 49 reactive reactive JJ cord-000248-zueoyesj 389 50 oxygen oxygen NN cord-000248-zueoyesj 389 51 species specie NNS cord-000248-zueoyesj 389 52 ( ( -LRB- cord-000248-zueoyesj 389 53 of of IN cord-000248-zueoyesj 389 54 course course NN cord-000248-zueoyesj 389 55 , , , cord-000248-zueoyesj 389 56 including include VBG cord-000248-zueoyesj 389 57 hydrogen hydrogen NN cord-000248-zueoyesj 389 58 peroxide peroxide NN cord-000248-zueoyesj 389 59 in in IN cord-000248-zueoyesj 389 60 cancer cancer NN cord-000248-zueoyesj 389 61 cells cell NNS cord-000248-zueoyesj 389 62 ) ) -RRB- cord-000248-zueoyesj 389 63 thus thus RB cord-000248-zueoyesj 389 64 exploiting exploit VBG cord-000248-zueoyesj 389 65 the the DT cord-000248-zueoyesj 389 66 ' ' `` cord-000248-zueoyesj 389 67 ' ' `` cord-000248-zueoyesj 389 68 Achilles Achilles NNP cord-000248-zueoyesj 389 69 hell hell NN cord-000248-zueoyesj 389 70 of of IN cord-000248-zueoyesj 389 71 cancer cancer NN cord-000248-zueoyesj 389 72 metabolism metabolism NN cord-000248-zueoyesj 389 73 ' ' '' cord-000248-zueoyesj 389 74 ' ' '' cord-000248-zueoyesj 389 75 [ [ -LRB- cord-000248-zueoyesj 389 76 190 190 CD cord-000248-zueoyesj 389 77 ] ] -RRB- cord-000248-zueoyesj 389 78 . . . cord-000248-zueoyesj 390 1 Claudin Claudin NNP cord-000248-zueoyesj 390 2 1 1 CD cord-000248-zueoyesj 390 3 , , , cord-000248-zueoyesj 390 4 CLDN1 CLDN1 NNS cord-000248-zueoyesj 390 5 [ [ -LRB- cord-000248-zueoyesj 390 6 191 191 CD cord-000248-zueoyesj 390 7 ] ] -RRB- cord-000248-zueoyesj 390 8 , , , cord-000248-zueoyesj 390 9 a a DT cord-000248-zueoyesj 390 10 gene gene NN cord-000248-zueoyesj 390 11 which which WDT cord-000248-zueoyesj 390 12 is be VBZ cord-000248-zueoyesj 390 13 reported report VBN cord-000248-zueoyesj 390 14 to to TO cord-000248-zueoyesj 390 15 be be VB cord-000248-zueoyesj 390 16 ' ' '' cord-000248-zueoyesj 390 17 ' ' '' cord-000248-zueoyesj 390 18 normally normally RB cord-000248-zueoyesj 390 19 expressed express VBN cord-000248-zueoyesj 390 20 in in IN cord-000248-zueoyesj 390 21 all all PDT cord-000248-zueoyesj 390 22 the the DT cord-000248-zueoyesj 390 23 living living NN cord-000248-zueoyesj 390 24 layers layer NNS cord-000248-zueoyesj 390 25 of of IN cord-000248-zueoyesj 390 26 the the DT cord-000248-zueoyesj 390 27 epidermis epidermis NN cord-000248-zueoyesj 390 28 ' ' '' cord-000248-zueoyesj 390 29 ' ' '' cord-000248-zueoyesj 390 30 [ [ -LRB- cord-000248-zueoyesj 390 31 192 192 CD cord-000248-zueoyesj 390 32 ] ] -RRB- cord-000248-zueoyesj 390 33 , , , cord-000248-zueoyesj 390 34 in in IN cord-000248-zueoyesj 390 35 concert concert NN cord-000248-zueoyesj 390 36 with with IN cord-000248-zueoyesj 390 37 AQP3 AQP3 NNP cord-000248-zueoyesj 390 38 , , , cord-000248-zueoyesj 390 39 is be VBZ cord-000248-zueoyesj 390 40 a a DT cord-000248-zueoyesj 390 41 key key JJ cord-000248-zueoyesj 390 42 component component NN cord-000248-zueoyesj 390 43 of of IN cord-000248-zueoyesj 390 44 the the DT cord-000248-zueoyesj 390 45 tight tight JJ cord-000248-zueoyesj 390 46 junction junction NN cord-000248-zueoyesj 390 47 complexes complex NNS cord-000248-zueoyesj 390 48 of of IN cord-000248-zueoyesj 390 49 the the DT cord-000248-zueoyesj 390 50 epidermis epidermis NN cord-000248-zueoyesj 390 51 . . . cord-000248-zueoyesj 391 1 Low low JJ cord-000248-zueoyesj 391 2 CLDN1 cldn1 NN cord-000248-zueoyesj 391 3 gene gene NN cord-000248-zueoyesj 391 4 expression expression NN cord-000248-zueoyesj 391 5 was be VBD cord-000248-zueoyesj 391 6 correlated correlate VBN cord-000248-zueoyesj 391 7 with with IN cord-000248-zueoyesj 391 8 shorter short JJR cord-000248-zueoyesj 391 9 overall overall JJ cord-000248-zueoyesj 391 10 survival survival NN cord-000248-zueoyesj 391 11 in in IN cord-000248-zueoyesj 391 12 lung lung NN cord-000248-zueoyesj 391 13 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 391 14 . . . cord-000248-zueoyesj 392 1 Overexpression overexpression NN cord-000248-zueoyesj 392 2 of of IN cord-000248-zueoyesj 392 3 CLDN1 CLDN1 NNS cord-000248-zueoyesj 392 4 was be VBD cord-000248-zueoyesj 392 5 correlated correlate VBN cord-000248-zueoyesj 392 6 with with IN cord-000248-zueoyesj 392 7 suppression suppression NN cord-000248-zueoyesj 392 8 of of IN cord-000248-zueoyesj 392 9 cancer cancer NN cord-000248-zueoyesj 392 10 cell cell NN cord-000248-zueoyesj 392 11 migration migration NN cord-000248-zueoyesj 392 12 , , , cord-000248-zueoyesj 392 13 invasion invasion NN cord-000248-zueoyesj 392 14 and and CC cord-000248-zueoyesj 392 15 metastasis metastasis NN cord-000248-zueoyesj 392 16 [ [ -LRB- cord-000248-zueoyesj 392 17 193 193 CD cord-000248-zueoyesj 392 18 ] ] -RRB- cord-000248-zueoyesj 392 19 . . . cord-000248-zueoyesj 393 1 Hoevel Hoevel NNP cord-000248-zueoyesj 393 2 et et NNP cord-000248-zueoyesj 393 3 al al NNP cord-000248-zueoyesj 393 4 . . . cord-000248-zueoyesj 394 1 report report VB cord-000248-zueoyesj 394 2 that that IN cord-000248-zueoyesj 394 3 re re NN cord-000248-zueoyesj 394 4 - - NN cord-000248-zueoyesj 394 5 expression expression NN cord-000248-zueoyesj 394 6 of of IN cord-000248-zueoyesj 394 7 CLDN1 CLDN1 NNS cord-000248-zueoyesj 394 8 , , , cord-000248-zueoyesj 394 9 in in IN cord-000248-zueoyesj 394 10 breast breast NN cord-000248-zueoyesj 394 11 tumor tumor NN cord-000248-zueoyesj 394 12 spheroids spheroid NNS cord-000248-zueoyesj 394 13 , , , cord-000248-zueoyesj 394 14 induces induce VBZ cord-000248-zueoyesj 394 15 apoptosis apoptosis NN cord-000248-zueoyesj 394 16 and and CC cord-000248-zueoyesj 394 17 they -PRON- PRP cord-000248-zueoyesj 394 18 conclude conclude VBP cord-000248-zueoyesj 394 19 : : : cord-000248-zueoyesj 394 20 '' '' '' cord-000248-zueoyesj 395 1 These these DT cord-000248-zueoyesj 395 2 findings finding NNS cord-000248-zueoyesj 395 3 support support VBP cord-000248-zueoyesj 395 4 a a DT cord-000248-zueoyesj 395 5 potential potential JJ cord-000248-zueoyesj 395 6 role role NN cord-000248-zueoyesj 395 7 of of IN cord-000248-zueoyesj 395 8 the the DT cord-000248-zueoyesj 395 9 tight tight JJ cord-000248-zueoyesj 395 10 junction junction NN cord-000248-zueoyesj 395 11 protein protein NN cord-000248-zueoyesj 395 12 CLDN1 CLDN1 NNS cord-000248-zueoyesj 395 13 in in IN cord-000248-zueoyesj 395 14 restricting restrict VBG cord-000248-zueoyesj 395 15 nutrient nutrient NN cord-000248-zueoyesj 395 16 and and CC cord-000248-zueoyesj 395 17 growth growth NN cord-000248-zueoyesj 395 18 factor factor NN cord-000248-zueoyesj 395 19 supplies supply NNS cord-000248-zueoyesj 395 20 in in IN cord-000248-zueoyesj 395 21 breast breast NN cord-000248-zueoyesj 395 22 cancer cancer NN cord-000248-zueoyesj 395 23 cells cell NNS cord-000248-zueoyesj 395 24 , , , cord-000248-zueoyesj 395 25 and and CC cord-000248-zueoyesj 395 26 they -PRON- PRP cord-000248-zueoyesj 395 27 indicate indicate VBP cord-000248-zueoyesj 395 28 that that IN cord-000248-zueoyesj 395 29 the the DT cord-000248-zueoyesj 395 30 loss loss NN cord-000248-zueoyesj 395 31 of of IN cord-000248-zueoyesj 395 32 the the DT cord-000248-zueoyesj 395 33 cell cell NN cord-000248-zueoyesj 395 34 membrane membrane NN cord-000248-zueoyesj 395 35 localization localization NN cord-000248-zueoyesj 395 36 of of IN cord-000248-zueoyesj 395 37 the the DT cord-000248-zueoyesj 395 38 tight tight JJ cord-000248-zueoyesj 395 39 junction junction NN cord-000248-zueoyesj 395 40 protein protein NN cord-000248-zueoyesj 395 41 CLDN1 CLDN1 NNS cord-000248-zueoyesj 395 42 in in IN cord-000248-zueoyesj 395 43 carcinomas carcinoma NNS cord-000248-zueoyesj 395 44 may may MD cord-000248-zueoyesj 395 45 be be VB cord-000248-zueoyesj 395 46 a a DT cord-000248-zueoyesj 395 47 crucial crucial JJ cord-000248-zueoyesj 395 48 step step NN cord-000248-zueoyesj 395 49 during during IN cord-000248-zueoyesj 395 50 tumor tumor NN cord-000248-zueoyesj 395 51 progression progression NN cord-000248-zueoyesj 395 52 ' ' '' cord-000248-zueoyesj 395 53 ' ' '' cord-000248-zueoyesj 395 54 [ [ -LRB- cord-000248-zueoyesj 395 55 194 194 CD cord-000248-zueoyesj 395 56 ] ] -RRB- cord-000248-zueoyesj 395 57 . . . cord-000248-zueoyesj 396 1 Tokes Tokes NNP cord-000248-zueoyesj 396 2 et et NNP cord-000248-zueoyesj 396 3 al.also al.also NNP cord-000248-zueoyesj 396 4 report report VBP cord-000248-zueoyesj 396 5 that that IN cord-000248-zueoyesj 396 6 malignant malignant JJ cord-000248-zueoyesj 396 7 invasive invasive JJ cord-000248-zueoyesj 396 8 breast breast NN cord-000248-zueoyesj 396 9 tumors tumor NNS cord-000248-zueoyesj 396 10 are be VBP cord-000248-zueoyesj 396 11 negative negative JJ cord-000248-zueoyesj 396 12 Table table NN cord-000248-zueoyesj 396 13 1 1 CD cord-000248-zueoyesj 396 14 . . . cord-000248-zueoyesj 397 1 Gene gene NN cord-000248-zueoyesj 397 2 names name NNS cord-000248-zueoyesj 397 3 and and CC cord-000248-zueoyesj 397 4 probe probe VBP cord-000248-zueoyesj 397 5 accession accession NN cord-000248-zueoyesj 397 6 number number NN cord-000248-zueoyesj 397 7 of of IN cord-000248-zueoyesj 397 8 the the DT cord-000248-zueoyesj 397 9 27 27 CD cord-000248-zueoyesj 397 10 probes probe NNS cord-000248-zueoyesj 397 11 with with IN cord-000248-zueoyesj 397 12 genes gene NNS cord-000248-zueoyesj 397 13 annotated annotate VBN cord-000248-zueoyesj 397 14 with with IN cord-000248-zueoyesj 397 15 functions function NNS cord-000248-zueoyesj 397 16 on on IN cord-000248-zueoyesj 397 17 cell cell NN cord-000248-zueoyesj 397 18 adhesion adhesion NN cord-000248-zueoyesj 397 19 , , , cord-000248-zueoyesj 397 20 cell cell NN cord-000248-zueoyesj 397 21 - - HYPH cord-000248-zueoyesj 397 22 cell cell NN cord-000248-zueoyesj 397 23 communication communication NN cord-000248-zueoyesj 397 24 , , , cord-000248-zueoyesj 397 25 tight tight JJ cord-000248-zueoyesj 397 26 junction junction NN cord-000248-zueoyesj 397 27 mechanisms mechanism NNS cord-000248-zueoyesj 397 28 and and CC cord-000248-zueoyesj 397 29 epithelial epithelial JJ cord-000248-zueoyesj 397 30 cell cell NN cord-000248-zueoyesj 397 31 polarity polarity NN cord-000248-zueoyesj 397 32 shown show VBN cord-000248-zueoyesj 397 33 in in IN cord-000248-zueoyesj 397 34 the the DT cord-000248-zueoyesj 397 35 heat heat NN cord-000248-zueoyesj 397 36 map map NN cord-000248-zueoyesj 397 37 in in IN cord-000248-zueoyesj 397 38 Figure Figure NNP cord-000248-zueoyesj 397 39 8 8 CD cord-000248-zueoyesj 397 40 . . . cord-000248-zueoyesj 398 1 for for IN cord-000248-zueoyesj 398 2 CLDN1 CLDN1 NNP cord-000248-zueoyesj 398 3 [ [ -LRB- cord-000248-zueoyesj 398 4 195 195 CD cord-000248-zueoyesj 398 5 ] ] -RRB- cord-000248-zueoyesj 398 6 . . . cord-000248-zueoyesj 399 1 As as IN cord-000248-zueoyesj 399 2 in in IN cord-000248-zueoyesj 399 3 breast breast NN cord-000248-zueoyesj 399 4 cancer cancer NN cord-000248-zueoyesj 399 5 [ [ -LRB- cord-000248-zueoyesj 399 6 196 196 CD cord-000248-zueoyesj 399 7 ] ] -RRB- cord-000248-zueoyesj 399 8 , , , cord-000248-zueoyesj 399 9 in in IN cord-000248-zueoyesj 399 10 which which WDT cord-000248-zueoyesj 399 11 reduced reduced JJ cord-000248-zueoyesj 399 12 expression expression NN cord-000248-zueoyesj 399 13 correlated correlate VBN cord-000248-zueoyesj 399 14 with with IN cord-000248-zueoyesj 399 15 recurrence recurrence NN cord-000248-zueoyesj 399 16 status status NN cord-000248-zueoyesj 399 17 , , , cord-000248-zueoyesj 399 18 the the DT cord-000248-zueoyesj 399 19 low low JJ cord-000248-zueoyesj 399 20 expression expression NN cord-000248-zueoyesj 399 21 of of IN cord-000248-zueoyesj 399 22 CLDN1 CLDN1 NNS cord-000248-zueoyesj 399 23 and and CC cord-000248-zueoyesj 399 24 other other JJ cord-000248-zueoyesj 399 25 tight tight JJ cord-000248-zueoyesj 399 26 junction junction NN cord-000248-zueoyesj 399 27 proteins protein NNS cord-000248-zueoyesj 399 28 seems seem VBZ cord-000248-zueoyesj 399 29 to to TO cord-000248-zueoyesj 399 30 contribute contribute VB cord-000248-zueoyesj 399 31 to to IN cord-000248-zueoyesj 399 32 cellular cellular JJ cord-000248-zueoyesj 399 33 detachment detachment NN cord-000248-zueoyesj 399 34 . . . cord-000248-zueoyesj 400 1 The the DT cord-000248-zueoyesj 400 2 complementary complementary JJ cord-000248-zueoyesj 400 3 set set NN cord-000248-zueoyesj 400 4 of of IN cord-000248-zueoyesj 400 5 correlations correlation NNS cord-000248-zueoyesj 400 6 with with IN cord-000248-zueoyesj 400 7 the the DT cord-000248-zueoyesj 400 8 Jensen Jensen NNP cord-000248-zueoyesj 400 9 - - HYPH cord-000248-zueoyesj 400 10 Shannon Shannon NNP cord-000248-zueoyesj 400 11 divergences divergence NNS cord-000248-zueoyesj 400 12 unveils unveil VBZ cord-000248-zueoyesj 400 13 biomarkers biomarker NNS cord-000248-zueoyesj 400 14 for for IN cord-000248-zueoyesj 400 15 cell cell NN cord-000248-zueoyesj 400 16 proliferation proliferation NN cord-000248-zueoyesj 400 17 , , , cord-000248-zueoyesj 400 18 chemotaxis chemotaxis NN cord-000248-zueoyesj 400 19 , , , cord-000248-zueoyesj 400 20 and and CC cord-000248-zueoyesj 400 21 responses response NNS cord-000248-zueoyesj 400 22 to to IN cord-000248-zueoyesj 400 23 external external JJ cord-000248-zueoyesj 400 24 simulus simulus NN cord-000248-zueoyesj 400 25 . . . cord-000248-zueoyesj 401 1 If if IN cord-000248-zueoyesj 401 2 the the DT cord-000248-zueoyesj 401 3 use use NN cord-000248-zueoyesj 401 4 of of IN cord-000248-zueoyesj 401 5 Gene Gene NNP cord-000248-zueoyesj 401 6 Ontology Ontology NNP cord-000248-zueoyesj 401 7 has have VBZ cord-000248-zueoyesj 401 8 produced produce VBN cord-000248-zueoyesj 401 9 very very RB cord-000248-zueoyesj 401 10 peculiar peculiar JJ cord-000248-zueoyesj 401 11 results result NNS cord-000248-zueoyesj 401 12 , , , cord-000248-zueoyesj 401 13 helping help VBG cord-000248-zueoyesj 401 14 us -PRON- PRP cord-000248-zueoyesj 401 15 to to TO cord-000248-zueoyesj 401 16 link link VB cord-000248-zueoyesj 401 17 the the DT cord-000248-zueoyesj 401 18 loss loss NN cord-000248-zueoyesj 401 19 of of IN cord-000248-zueoyesj 401 20 expression expression NN cord-000248-zueoyesj 401 21 of of IN cord-000248-zueoyesj 401 22 44 44 CD cord-000248-zueoyesj 401 23 genes gene NNS cord-000248-zueoyesj 401 24 with with IN cord-000248-zueoyesj 401 25 a a DT cord-000248-zueoyesj 401 26 significant significant JJ cord-000248-zueoyesj 401 27 change change NN cord-000248-zueoyesj 401 28 in in IN cord-000248-zueoyesj 401 29 epithelial epithelial JJ cord-000248-zueoyesj 401 30 structure structure NN cord-000248-zueoyesj 401 31 and and CC cord-000248-zueoyesj 401 32 development development NN cord-000248-zueoyesj 401 33 . . . cord-000248-zueoyesj 402 1 A a DT cord-000248-zueoyesj 402 2 natural natural JJ cord-000248-zueoyesj 402 3 question question NN cord-000248-zueoyesj 402 4 arises arise VBZ cord-000248-zueoyesj 402 5 : : : cord-000248-zueoyesj 402 6 ' ' '' cord-000248-zueoyesj 402 7 ' ' '' cord-000248-zueoyesj 402 8 Which which WDT cord-000248-zueoyesj 402 9 is be VBZ cord-000248-zueoyesj 402 10 the the DT cord-000248-zueoyesj 402 11 significance significance NN cord-000248-zueoyesj 402 12 of of IN cord-000248-zueoyesj 402 13 another another DT cord-000248-zueoyesj 402 14 set set NN cord-000248-zueoyesj 402 15 , , , cord-000248-zueoyesj 402 16 now now RB cord-000248-zueoyesj 402 17 arbitrarily arbitrarily RB cord-000248-zueoyesj 402 18 chosen choose VBN cord-000248-zueoyesj 402 19 to to TO cord-000248-zueoyesj 402 20 be be VB cord-000248-zueoyesj 402 21 also also RB cord-000248-zueoyesj 402 22 of of IN cord-000248-zueoyesj 402 23 the the DT cord-000248-zueoyesj 402 24 same same JJ cord-000248-zueoyesj 402 25 cardinality cardinality NN cord-000248-zueoyesj 402 26 ( ( -LRB- cord-000248-zueoyesj 402 27 i.e i.e NNP cord-000248-zueoyesj 402 28 44 44 CD cord-000248-zueoyesj 402 29 genes gene NNS cord-000248-zueoyesj 402 30 ) ) -RRB- cord-000248-zueoyesj 402 31 with with IN cord-000248-zueoyesj 402 32 the the DT cord-000248-zueoyesj 402 33 complementary complementary JJ cord-000248-zueoyesj 402 34 behavioural behavioural JJ cord-000248-zueoyesj 402 35 pattern pattern NN cord-000248-zueoyesj 402 36 ? ? . cord-000248-zueoyesj 402 37 ' ' '' cord-000248-zueoyesj 402 38 ' ' '' cord-000248-zueoyesj 402 39 We -PRON- PRP cord-000248-zueoyesj 402 40 have have VBP cord-000248-zueoyesj 402 41 now now RB cord-000248-zueoyesj 402 42 listed list VBN cord-000248-zueoyesj 402 43 all all PDT cord-000248-zueoyesj 402 44 the the DT cord-000248-zueoyesj 402 45 probes probe NNS cord-000248-zueoyesj 402 46 according accord VBG cord-000248-zueoyesj 402 47 to to IN cord-000248-zueoyesj 402 48 Diff Diff NNP cord-000248-zueoyesj 402 49 . . . cord-000248-zueoyesj 403 1 ( ( -LRB- cord-000248-zueoyesj 403 2 probe probe NN cord-000248-zueoyesj 403 3 ) ) -RRB- cord-000248-zueoyesj 404 1 = = SYM cord-000248-zueoyesj 404 2 JSM0(probe)2JSM5(probe JSM0(probe)2JSM5(probe NNP cord-000248-zueoyesj 404 3 ) ) -RRB- cord-000248-zueoyesj 404 4 in in IN cord-000248-zueoyesj 404 5 decreasing decrease VBG cord-000248-zueoyesj 404 6 order order NN cord-000248-zueoyesj 404 7 . . . cord-000248-zueoyesj 405 1 The the DT cord-000248-zueoyesj 405 2 results result NNS cord-000248-zueoyesj 405 3 are be VBP cord-000248-zueoyesj 405 4 provided provide VBN cord-000248-zueoyesj 405 5 as as IN cord-000248-zueoyesj 405 6 Haqq-PLoSONE-SupFile.xls Haqq-PLoSONE-SupFile.xls NNP cord-000248-zueoyesj 405 7 ( ( -LRB- cord-000248-zueoyesj 405 8 ' ' `` cord-000248-zueoyesj 405 9 Results result NNS cord-000248-zueoyesj 405 10 - - HYPH cord-000248-zueoyesj 405 11 correlation correlation NN cord-000248-zueoyesj 405 12 ' ' '' cord-000248-zueoyesj 405 13 sheet sheet NN cord-000248-zueoyesj 405 14 ) ) -RRB- cord-000248-zueoyesj 405 15 . . . cord-000248-zueoyesj 406 1 This this DT cord-000248-zueoyesj 406 2 now now RB cord-000248-zueoyesj 406 3 gives give VBZ cord-000248-zueoyesj 406 4 ADA ADA NNP cord-000248-zueoyesj 406 5 as as IN cord-000248-zueoyesj 406 6 the the DT cord-000248-zueoyesj 406 7 first first JJ cord-000248-zueoyesj 406 8 ranked ranked JJ cord-000248-zueoyesj 406 9 gene gene NN cord-000248-zueoyesj 406 10 . . . cord-000248-zueoyesj 407 1 Again again RB cord-000248-zueoyesj 407 2 using use VBG cord-000248-zueoyesj 407 3 GATHER gather VB cord-000248-zueoyesj 407 4 [ [ -LRB- cord-000248-zueoyesj 407 5 155 155 CD cord-000248-zueoyesj 407 6 ] ] -RRB- cord-000248-zueoyesj 407 7 on on IN cord-000248-zueoyesj 407 8 the the DT cord-000248-zueoyesj 407 9 first first JJ cord-000248-zueoyesj 407 10 44 44 CD cord-000248-zueoyesj 407 11 genes gene NNS cord-000248-zueoyesj 407 12 recognized recognize VBN cord-000248-zueoyesj 407 13 by by IN cord-000248-zueoyesj 407 14 the the DT cord-000248-zueoyesj 407 15 software software NN cord-000248-zueoyesj 407 16 , , , cord-000248-zueoyesj 407 17 and and CC cord-000248-zueoyesj 407 18 again again RB cord-000248-zueoyesj 407 19 using use VBG cord-000248-zueoyesj 407 20 Gene Gene NNP cord-000248-zueoyesj 407 21 Ontology Ontology NNP cord-000248-zueoyesj 407 22 , , , cord-000248-zueoyesj 407 23 we -PRON- PRP cord-000248-zueoyesj 407 24 observe observe VBP cord-000248-zueoyesj 407 25 as as IN cord-000248-zueoyesj 407 26 most most RBS cord-000248-zueoyesj 407 27 important important JJ cord-000248-zueoyesj 407 28 common common JJ cord-000248-zueoyesj 407 29 function function NN cord-000248-zueoyesj 407 30 that that WDT cord-000248-zueoyesj 407 31 of of IN cord-000248-zueoyesj 407 32 cell cell NN cord-000248-zueoyesj 407 33 motility motility NN cord-000248-zueoyesj 407 34 ( ( -LRB- cord-000248-zueoyesj 407 35 CCL3 CCL3 NNP cord-000248-zueoyesj 407 36 , , , cord-000248-zueoyesj 407 37 CXCL10 CXCL10 NNP cord-000248-zueoyesj 407 38 , , , cord-000248-zueoyesj 407 39 FPRL1 FPRL1 NNP cord-000248-zueoyesj 407 40 , , , cord-000248-zueoyesj 407 41 SEMA6A SEMA6A NNP cord-000248-zueoyesj 407 42 , , , cord-000248-zueoyesj 407 43 SPP1 SPP1 NNP cord-000248-zueoyesj 407 44 ) ) -RRB- cord-000248-zueoyesj 407 45 , , , cord-000248-zueoyesj 407 46 p p NN cord-000248-zueoyesj 407 47 - - HYPH cord-000248-zueoyesj 407 48 value value NN cord-000248-zueoyesj 407 49 = = SYM cord-000248-zueoyesj 407 50 0.0002 0.0002 CD cord-000248-zueoyesj 407 51 , , , cord-000248-zueoyesj 407 52 Bayes Bayes NNP cord-000248-zueoyesj 407 53 Factor Factor NNP cord-000248-zueoyesj 407 54 5 5 CD cord-000248-zueoyesj 407 55 , , , cord-000248-zueoyesj 407 56 and and CC cord-000248-zueoyesj 407 57 chemotaxis chemotaxis NN cord-000248-zueoyesj 407 58 ( ( -LRB- cord-000248-zueoyesj 407 59 CCL3 CCL3 NNP cord-000248-zueoyesj 407 60 , , , cord-000248-zueoyesj 407 61 CKLFSF7 cklfsf7 NN cord-000248-zueoyesj 407 62 , , , cord-000248-zueoyesj 407 63 CXCL10 CXCL10 NNP cord-000248-zueoyesj 407 64 , , , cord-000248-zueoyesj 407 65 FPRL1 FPRL1 NNS cord-000248-zueoyesj 407 66 , , , cord-000248-zueoyesj 407 67 SPP1 SPP1 NNP cord-000248-zueoyesj 407 68 ) ) -RRB- cord-000248-zueoyesj 407 69 , , , cord-000248-zueoyesj 407 70 p p NN cord-000248-zueoyesj 407 71 - - HYPH cord-000248-zueoyesj 407 72 value,0.0001 value,0.0001 NNP cord-000248-zueoyesj 407 73 , , , cord-000248-zueoyesj 407 74 Bayes Bayes NNP cord-000248-zueoyesj 407 75 Factor Factor NNP cord-000248-zueoyesj 407 76 7 7 CD cord-000248-zueoyesj 407 77 . . . cord-000248-zueoyesj 408 1 The the DT cord-000248-zueoyesj 408 2 genes gene NNS cord-000248-zueoyesj 408 3 CXCL10 CXCL10 NNP cord-000248-zueoyesj 408 4 , , , cord-000248-zueoyesj 408 5 SPP1 SPP1 NNPS cord-000248-zueoyesj 408 6 , , , cord-000248-zueoyesj 408 7 and and CC cord-000248-zueoyesj 408 8 WARS war NNS cord-000248-zueoyesj 408 9 , , , cord-000248-zueoyesj 408 10 together together RB cord-000248-zueoyesj 408 11 with with IN cord-000248-zueoyesj 408 12 another another DT cord-000248-zueoyesj 408 13 gene gene NN cord-000248-zueoyesj 408 14 that that WDT cord-000248-zueoyesj 408 15 has have VBZ cord-000248-zueoyesj 408 16 been be VBN cord-000248-zueoyesj 408 17 annotated annotate VBN cord-000248-zueoyesj 408 18 as as IN cord-000248-zueoyesj 408 19 related relate VBN cord-000248-zueoyesj 408 20 to to IN cord-000248-zueoyesj 408 21 positive positive JJ cord-000248-zueoyesj 408 22 regulation regulation NN cord-000248-zueoyesj 408 23 of of IN cord-000248-zueoyesj 408 24 mitosis mitosis NN cord-000248-zueoyesj 408 25 ( ( -LRB- cord-000248-zueoyesj 408 26 SCH1 SCH1 NNP cord-000248-zueoyesj 408 27 ) ) -RRB- cord-000248-zueoyesj 408 28 , , , cord-000248-zueoyesj 408 29 have have VBP cord-000248-zueoyesj 408 30 also also RB cord-000248-zueoyesj 408 31 been be VBN cord-000248-zueoyesj 408 32 annotated annotate VBN cord-000248-zueoyesj 408 33 as as IN cord-000248-zueoyesj 408 34 regulators regulator NNS cord-000248-zueoyesj 408 35 of of IN cord-000248-zueoyesj 408 36 cell cell NN cord-000248-zueoyesj 408 37 proliferation proliferation NN cord-000248-zueoyesj 408 38 ( ( -LRB- cord-000248-zueoyesj 408 39 pvalue pvalue NNP cord-000248-zueoyesj 408 40 = = SYM cord-000248-zueoyesj 408 41 0.007 0.007 CD cord-000248-zueoyesj 408 42 , , , cord-000248-zueoyesj 408 43 Bayes Bayes NNP cord-000248-zueoyesj 408 44 Factor Factor NNP cord-000248-zueoyesj 408 45 2 2 CD cord-000248-zueoyesj 408 46 ) ) -RRB- cord-000248-zueoyesj 408 47 . . . cord-000248-zueoyesj 409 1 Using use VBG cord-000248-zueoyesj 409 2 the the DT cord-000248-zueoyesj 409 3 g g NN cord-000248-zueoyesj 409 4 : : : cord-000248-zueoyesj 409 5 Profiler profiler NN cord-000248-zueoyesj 409 6 software software NN cord-000248-zueoyesj 409 7 [ [ -LRB- cord-000248-zueoyesj 409 8 156 156 CD cord-000248-zueoyesj 409 9 ] ] -RRB- cord-000248-zueoyesj 409 10 , , , cord-000248-zueoyesj 409 11 we -PRON- PRP cord-000248-zueoyesj 409 12 obtain obtain VBP cord-000248-zueoyesj 409 13 a a DT cord-000248-zueoyesj 409 14 complementary complementary JJ cord-000248-zueoyesj 409 15 information information NN cord-000248-zueoyesj 409 16 . . . cord-000248-zueoyesj 410 1 Sixteen sixteen CD cord-000248-zueoyesj 410 2 genes gene NNS cord-000248-zueoyesj 410 3 ( ( -LRB- cord-000248-zueoyesj 410 4 including include VBG cord-000248-zueoyesj 410 5 SPP1 SPP1 NNP cord-000248-zueoyesj 410 6 , , , cord-000248-zueoyesj 410 7 SEMA6A SEMA6A NNP cord-000248-zueoyesj 410 8 , , , cord-000248-zueoyesj 410 9 LEF1 LEF1 NNP cord-000248-zueoyesj 410 10 [ [ -LRB- cord-000248-zueoyesj 410 11 197 197 CD cord-000248-zueoyesj 410 12 ] ] -RRB- cord-000248-zueoyesj 410 13 , , , cord-000248-zueoyesj 410 14 CD230 cd230 NN cord-000248-zueoyesj 410 15 , , , cord-000248-zueoyesj 410 16 ALS2CR2 als2cr2 CD cord-000248-zueoyesj 410 17 , , , cord-000248-zueoyesj 410 18 DKK1 DKK1 NNP cord-000248-zueoyesj 410 19 , , , cord-000248-zueoyesj 410 20 CYFIP2 CYFIP2 NNS cord-000248-zueoyesj 410 21 , , , cord-000248-zueoyesj 410 22 SHC1 SHC1 NNP cord-000248-zueoyesj 410 23 , , , cord-000248-zueoyesj 410 24 ANKRD7 ANKRD7 NNP cord-000248-zueoyesj 410 25 , , , cord-000248-zueoyesj 410 26 IFI6 IFI6 NNP cord-000248-zueoyesj 410 27 , , , cord-000248-zueoyesj 410 28 CITED1 cited1 NN cord-000248-zueoyesj 410 29 , , , cord-000248-zueoyesj 410 30 and and CC cord-000248-zueoyesj 410 31 MID1 MID1 NNP cord-000248-zueoyesj 410 32 ) ) -RRB- cord-000248-zueoyesj 410 33 have have VBP cord-000248-zueoyesj 410 34 been be VBN cord-000248-zueoyesj 410 35 associated associate VBN cord-000248-zueoyesj 410 36 to to IN cord-000248-zueoyesj 410 37 the the DT cord-000248-zueoyesj 410 38 Gene Gene NNP cord-000248-zueoyesj 410 39 Ontology Ontology NNP cord-000248-zueoyesj 410 40 term term NN cord-000248-zueoyesj 410 41 of of IN cord-000248-zueoyesj 410 42 ' ' `` cord-000248-zueoyesj 410 43 developmental developmental JJ cord-000248-zueoyesj 410 44 process process NN cord-000248-zueoyesj 410 45 ' ' '' cord-000248-zueoyesj 410 46 . . . cord-000248-zueoyesj 411 1 SPP1 SPP1 NNP cord-000248-zueoyesj 411 2 -Secreted -Secreted . cord-000248-zueoyesj 412 1 phosphoprotein phosphoprotein NNP cord-000248-zueoyesj 412 2 1 1 CD cord-000248-zueoyesj 412 3 ( ( -LRB- cord-000248-zueoyesj 412 4 osteopontin osteopontin NNP cord-000248-zueoyesj 412 5 ) ) -RRB- cord-000248-zueoyesj 412 6 . . . cord-000248-zueoyesj 413 1 SPP1 SPP1 NNP cord-000248-zueoyesj 413 2 is be VBZ cord-000248-zueoyesj 413 3 one one CD cord-000248-zueoyesj 413 4 of of IN cord-000248-zueoyesj 413 5 the the DT cord-000248-zueoyesj 413 6 most most RBS cord-000248-zueoyesj 413 7 conspicuous conspicuous JJ cord-000248-zueoyesj 413 8 melanoma melanoma NN cord-000248-zueoyesj 413 9 biomarkers biomarker NNS cord-000248-zueoyesj 413 10 [ [ -LRB- cord-000248-zueoyesj 413 11 198 198 CD cord-000248-zueoyesj 413 12 , , , cord-000248-zueoyesj 413 13 199 199 CD cord-000248-zueoyesj 413 14 , , , cord-000248-zueoyesj 413 15 200 200 CD cord-000248-zueoyesj 413 16 , , , cord-000248-zueoyesj 413 17 201 201 CD cord-000248-zueoyesj 413 18 , , , cord-000248-zueoyesj 413 19 202 202 CD cord-000248-zueoyesj 413 20 , , , cord-000248-zueoyesj 413 21 203 203 CD cord-000248-zueoyesj 413 22 , , , cord-000248-zueoyesj 413 23 204 204 CD cord-000248-zueoyesj 413 24 , , , cord-000248-zueoyesj 413 25 205 205 CD cord-000248-zueoyesj 413 26 , , , cord-000248-zueoyesj 413 27 206 206 CD cord-000248-zueoyesj 413 28 , , , cord-000248-zueoyesj 413 29 207 207 CD cord-000248-zueoyesj 413 30 , , , cord-000248-zueoyesj 413 31 208 208 CD cord-000248-zueoyesj 413 32 , , , cord-000248-zueoyesj 413 33 209 209 CD cord-000248-zueoyesj 413 34 , , , cord-000248-zueoyesj 413 35 210 210 CD cord-000248-zueoyesj 413 36 , , , cord-000248-zueoyesj 413 37 211 211 CD cord-000248-zueoyesj 413 38 , , , cord-000248-zueoyesj 413 39 212 212 CD cord-000248-zueoyesj 413 40 , , , cord-000248-zueoyesj 413 41 213 213 CD cord-000248-zueoyesj 413 42 , , , cord-000248-zueoyesj 413 43 214 214 CD cord-000248-zueoyesj 413 44 , , , cord-000248-zueoyesj 413 45 215 215 CD cord-000248-zueoyesj 413 46 , , , cord-000248-zueoyesj 413 47 216 216 CD cord-000248-zueoyesj 413 48 , , , cord-000248-zueoyesj 413 49 217 217 CD cord-000248-zueoyesj 413 50 , , , cord-000248-zueoyesj 413 51 218 218 CD cord-000248-zueoyesj 413 52 , , , cord-000248-zueoyesj 413 53 219 219 CD cord-000248-zueoyesj 413 54 , , , cord-000248-zueoyesj 413 55 220 220 CD cord-000248-zueoyesj 413 56 , , , cord-000248-zueoyesj 413 57 221 221 CD cord-000248-zueoyesj 413 58 , , , cord-000248-zueoyesj 413 59 222 222 CD cord-000248-zueoyesj 413 60 ] ] -RRB- cord-000248-zueoyesj 413 61 ( ( -LRB- cord-000248-zueoyesj 413 62 see see VB cord-000248-zueoyesj 413 63 also also RB cord-000248-zueoyesj 413 64 the the DT cord-000248-zueoyesj 413 65 references reference NNS cord-000248-zueoyesj 413 66 cited cite VBN cord-000248-zueoyesj 413 67 in in IN cord-000248-zueoyesj 413 68 Figure Figure NNP cord-000248-zueoyesj 413 69 6 6 CD cord-000248-zueoyesj 413 70 and and CC cord-000248-zueoyesj 413 71 note note VB cord-000248-zueoyesj 413 72 its -PRON- PRP$ cord-000248-zueoyesj 413 73 eminent eminent JJ cord-000248-zueoyesj 413 74 position position NN cord-000248-zueoyesj 413 75 in in IN cord-000248-zueoyesj 413 76 this this DT cord-000248-zueoyesj 413 77 scatter scatter NN cord-000248-zueoyesj 413 78 plot plot NN cord-000248-zueoyesj 413 79 ) ) -RRB- cord-000248-zueoyesj 413 80 . . . cord-000248-zueoyesj 414 1 In in IN cord-000248-zueoyesj 414 2 1990 1990 CD cord-000248-zueoyesj 414 3 , , , cord-000248-zueoyesj 414 4 Craig Craig NNP cord-000248-zueoyesj 414 5 et et NNP cord-000248-zueoyesj 414 6 al al NNP cord-000248-zueoyesj 414 7 . . NNP cord-000248-zueoyesj 414 8 reported report VBD cord-000248-zueoyesj 414 9 that that IN cord-000248-zueoyesj 414 10 SPP1 SPP1 NNP cord-000248-zueoyesj 414 11 may may MD cord-000248-zueoyesj 414 12 work work VB cord-000248-zueoyesj 414 13 as as IN cord-000248-zueoyesj 414 14 an an DT cord-000248-zueoyesj 414 15 autocrine autocrine JJ cord-000248-zueoyesj 414 16 adhesion adhesion NN cord-000248-zueoyesj 414 17 factor factor NN cord-000248-zueoyesj 414 18 for for IN cord-000248-zueoyesj 414 19 tumor tumor NN cord-000248-zueoyesj 414 20 cells cell NNS cord-000248-zueoyesj 414 21 ( ( -LRB- cord-000248-zueoyesj 414 22 see see VB cord-000248-zueoyesj 414 23 also also RB cord-000248-zueoyesj 414 24 [ [ -LRB- cord-000248-zueoyesj 414 25 204 204 CD cord-000248-zueoyesj 414 26 , , , cord-000248-zueoyesj 414 27 223 223 CD cord-000248-zueoyesj 414 28 , , , cord-000248-zueoyesj 414 29 224 224 CD cord-000248-zueoyesj 414 30 ] ] -RRB- cord-000248-zueoyesj 414 31 ) ) -RRB- cord-000248-zueoyesj 414 32 . . . cord-000248-zueoyesj 415 1 They -PRON- PRP cord-000248-zueoyesj 415 2 observed observe VBD cord-000248-zueoyesj 415 3 that that DT cord-000248-zueoyesj 415 4 '' '' '' cord-000248-zueoyesj 416 1 SPP1 SPP1 NNP cord-000248-zueoyesj 416 2 mRNA mRNA NNP cord-000248-zueoyesj 416 3 , , , cord-000248-zueoyesj 416 4 which which WDT cord-000248-zueoyesj 416 5 is be VBZ cord-000248-zueoyesj 416 6 barely barely RB cord-000248-zueoyesj 416 7 detectable detectable JJ cord-000248-zueoyesj 416 8 in in IN cord-000248-zueoyesj 416 9 normal normal JJ cord-000248-zueoyesj 416 10 mouse mouse NN cord-000248-zueoyesj 416 11 epidermis epidermis NN cord-000248-zueoyesj 416 12 , , , cord-000248-zueoyesj 416 13 was be VBD cord-000248-zueoyesj 416 14 expressed express VBN cord-000248-zueoyesj 416 15 at at IN cord-000248-zueoyesj 416 16 moderate moderate JJ cord-000248-zueoyesj 416 17 - - HYPH cord-000248-zueoyesj 416 18 to to IN cord-000248-zueoyesj 416 19 - - HYPH cord-000248-zueoyesj 416 20 high high JJ cord-000248-zueoyesj 416 21 levels level NNS cord-000248-zueoyesj 416 22 in in IN cord-000248-zueoyesj 416 23 2 2 CD cord-000248-zueoyesj 416 24 of of IN cord-000248-zueoyesj 416 25 3 3 CD cord-000248-zueoyesj 416 26 epidermal epidermal JJ cord-000248-zueoyesj 416 27 papillomas papilloma NNS cord-000248-zueoyesj 416 28 and and CC cord-000248-zueoyesj 416 29 at at IN cord-000248-zueoyesj 416 30 consistently consistently RB cord-000248-zueoyesj 416 31 high high JJ cord-000248-zueoyesj 416 32 levels level NNS cord-000248-zueoyesj 416 33 in in IN cord-000248-zueoyesj 416 34 7 7 CD cord-000248-zueoyesj 416 35 of of IN cord-000248-zueoyesj 416 36 7 7 CD cord-000248-zueoyesj 416 37 squamous squamous JJ cord-000248-zueoyesj 416 38 - - HYPH cord-000248-zueoyesj 416 39 cell cell NN cord-000248-zueoyesj 416 40 carcinomas carcinoma NNS cord-000248-zueoyesj 416 41 induced induce VBN cord-000248-zueoyesj 416 42 by by IN cord-000248-zueoyesj 416 43 an an DT cord-000248-zueoyesj 416 44 initiation initiation NN cord-000248-zueoyesj 416 45 - - HYPH cord-000248-zueoyesj 416 46 promotion promotion NN cord-000248-zueoyesj 416 47 regimen regimen NN cord-000248-zueoyesj 416 48 ' ' '' cord-000248-zueoyesj 416 49 ' ' '' cord-000248-zueoyesj 416 50 [ [ -LRB- cord-000248-zueoyesj 416 51 225 225 CD cord-000248-zueoyesj 416 52 ] ] -RRB- cord-000248-zueoyesj 416 53 . . . cord-000248-zueoyesj 417 1 The the DT cord-000248-zueoyesj 417 2 evidence evidence NN cord-000248-zueoyesj 417 3 is be VBZ cord-000248-zueoyesj 417 4 being be VBG cord-000248-zueoyesj 417 5 constantly constantly RB cord-000248-zueoyesj 417 6 expanded expand VBN cord-000248-zueoyesj 417 7 on on IN cord-000248-zueoyesj 417 8 the the DT cord-000248-zueoyesj 417 9 role role NN cord-000248-zueoyesj 417 10 of of IN cord-000248-zueoyesj 417 11 SPP1 SPP1 NNP cord-000248-zueoyesj 417 12 as as IN cord-000248-zueoyesj 417 13 a a DT cord-000248-zueoyesj 417 14 molecular molecular JJ cord-000248-zueoyesj 417 15 prognostic prognostic JJ cord-000248-zueoyesj 417 16 biomarker biomarker NN cord-000248-zueoyesj 417 17 in in IN cord-000248-zueoyesj 417 18 melanoma melanoma NN cord-000248-zueoyesj 417 19 [ [ -LRB- cord-000248-zueoyesj 417 20 226 226 CD cord-000248-zueoyesj 417 21 ] ] -RRB- cord-000248-zueoyesj 417 22 . . . cord-000248-zueoyesj 418 1 Activation activation NN cord-000248-zueoyesj 418 2 of of IN cord-000248-zueoyesj 418 3 SPP1 SPP1 NNPS cord-000248-zueoyesj 418 4 may may MD cord-000248-zueoyesj 418 5 be be VB cord-000248-zueoyesj 418 6 an an DT cord-000248-zueoyesj 418 7 important important JJ cord-000248-zueoyesj 418 8 event event NN cord-000248-zueoyesj 418 9 that that WDT cord-000248-zueoyesj 418 10 allows allow VBZ cord-000248-zueoyesj 418 11 the the DT cord-000248-zueoyesj 418 12 transformed transformed JJ cord-000248-zueoyesj 418 13 melanocytes melanocyte NNS cord-000248-zueoyesj 418 14 to to TO cord-000248-zueoyesj 418 15 invade invade VB cord-000248-zueoyesj 418 16 the the DT cord-000248-zueoyesj 418 17 dermis dermis NN cord-000248-zueoyesj 418 18 as as IN cord-000248-zueoyesj 418 19 proposed propose VBN cord-000248-zueoyesj 418 20 by by IN cord-000248-zueoyesj 418 21 Geissinger Geissinger NNP cord-000248-zueoyesj 418 22 et et NNP cord-000248-zueoyesj 418 23 al al NNP cord-000248-zueoyesj 418 24 . . . cord-000248-zueoyesj 419 1 in in IN cord-000248-zueoyesj 419 2 2002 2002 CD cord-000248-zueoyesj 419 3 [ [ -LRB- cord-000248-zueoyesj 419 4 208 208 CD cord-000248-zueoyesj 419 5 ] ] -RRB- cord-000248-zueoyesj 419 6 . . . cord-000248-zueoyesj 420 1 This this DT cord-000248-zueoyesj 420 2 causes cause VBZ cord-000248-zueoyesj 420 3 SPP1 SPP1 NNS cord-000248-zueoyesj 420 4 to to TO cord-000248-zueoyesj 420 5 avoid avoid VB cord-000248-zueoyesj 420 6 the the DT cord-000248-zueoyesj 420 7 apoptotic apoptotic JJ cord-000248-zueoyesj 420 8 stimulus stimulus NN cord-000248-zueoyesj 420 9 , , , cord-000248-zueoyesj 420 10 one one CD cord-000248-zueoyesj 420 11 of of IN cord-000248-zueoyesj 420 12 the the DT cord-000248-zueoyesj 420 13 ' ' `` cord-000248-zueoyesj 420 14 ' ' `` cord-000248-zueoyesj 420 15 hallmarks hallmark NNS cord-000248-zueoyesj 420 16 of of IN cord-000248-zueoyesj 420 17 cancer cancer NN cord-000248-zueoyesj 420 18 ' ' '' cord-000248-zueoyesj 420 19 ' ' '' cord-000248-zueoyesj 420 20 , , , cord-000248-zueoyesj 420 21 which which WDT cord-000248-zueoyesj 420 22 invasive invasive JJ cord-000248-zueoyesj 420 23 cells cell NNS cord-000248-zueoyesj 420 24 will will MD cord-000248-zueoyesj 420 25 be be VB cord-000248-zueoyesj 420 26 receiving receive VBG cord-000248-zueoyesj 420 27 from from IN cord-000248-zueoyesj 420 28 this this DT cord-000248-zueoyesj 420 29 new new JJ cord-000248-zueoyesj 420 30 tissue tissue NN cord-000248-zueoyesj 420 31 . . . cord-000248-zueoyesj 421 1 If if IN cord-000248-zueoyesj 421 2 we -PRON- PRP cord-000248-zueoyesj 421 3 extend extend VBP cord-000248-zueoyesj 421 4 the the DT cord-000248-zueoyesj 421 5 literature literature NN cord-000248-zueoyesj 421 6 - - HYPH cord-000248-zueoyesj 421 7 based base VBN cord-000248-zueoyesj 421 8 search search NN cord-000248-zueoyesj 421 9 so so IN cord-000248-zueoyesj 421 10 that that IN cord-000248-zueoyesj 421 11 we -PRON- PRP cord-000248-zueoyesj 421 12 now now RB cord-000248-zueoyesj 421 13 include include VBP cord-000248-zueoyesj 421 14 the the DT cord-000248-zueoyesj 421 15 first first JJ cord-000248-zueoyesj 421 16 200 200 CD cord-000248-zueoyesj 421 17 gene gene NN cord-000248-zueoyesj 421 18 probes probe NNS cord-000248-zueoyesj 421 19 recognized recognize VBN cord-000248-zueoyesj 421 20 by by IN cord-000248-zueoyesj 421 21 GATHER gather NN cord-000248-zueoyesj 421 22 then then RB cord-000248-zueoyesj 421 23 we -PRON- PRP cord-000248-zueoyesj 421 24 have have VBP cord-000248-zueoyesj 421 25 27 27 CD cord-000248-zueoyesj 421 26 gene gene NN cord-000248-zueoyesj 421 27 probes probe NNS cord-000248-zueoyesj 421 28 associated associate VBN cord-000248-zueoyesj 421 29 with with IN cord-000248-zueoyesj 421 30 the the DT cord-000248-zueoyesj 421 31 Gene Gene NNP cord-000248-zueoyesj 421 32 Ontology Ontology NNP cord-000248-zueoyesj 421 33 in in IN cord-000248-zueoyesj 421 34 terms term NNS cord-000248-zueoyesj 421 35 of of IN cord-000248-zueoyesj 421 36 ' ' '' cord-000248-zueoyesj 421 37 ' ' '' cord-000248-zueoyesj 421 38 cell cell NN cord-000248-zueoyesj 421 39 proliferation proliferation NN cord-000248-zueoyesj 421 40 ' ' '' cord-000248-zueoyesj 421 41 ' ' '' cord-000248-zueoyesj 421 42 ( ( -LRB- cord-000248-zueoyesj 421 43 p p NN cord-000248-zueoyesj 421 44 - - HYPH cord-000248-zueoyesj 421 45 value value NN cord-000248-zueoyesj 421 46 = = SYM cord-000248-zueoyesj 421 47 0.0002 0.0002 CD cord-000248-zueoyesj 421 48 , , , cord-000248-zueoyesj 421 49 Bayes Bayes NNP cord-000248-zueoyesj 421 50 Factor Factor NNP cord-000248-zueoyesj 421 51 5 5 CD cord-000248-zueoyesj 421 52 ) ) -RRB- cord-000248-zueoyesj 421 53 , , , cord-000248-zueoyesj 421 54 and and CC cord-000248-zueoyesj 421 55 ' ' `` cord-000248-zueoyesj 421 56 regulation regulation NN cord-000248-zueoyesj 421 57 of of IN cord-000248-zueoyesj 421 58 cell cell NN cord-000248-zueoyesj 421 59 proliferation proliferation NN cord-000248-zueoyesj 421 60 ' ' '' cord-000248-zueoyesj 421 61 , , , cord-000248-zueoyesj 421 62 p p NN cord-000248-zueoyesj 421 63 - - HYPH cord-000248-zueoyesj 421 64 value value NN cord-000248-zueoyesj 421 65 = = SYM cord-000248-zueoyesj 421 66 0.003 0.003 CD cord-000248-zueoyesj 421 67 , , , cord-000248-zueoyesj 421 68 Bayes Bayes NNP cord-000248-zueoyesj 421 69 factor factor NN cord-000248-zueoyesj 421 70 3 3 CD cord-000248-zueoyesj 421 71 ) ) -RRB- cord-000248-zueoyesj 421 72 . . . cord-000248-zueoyesj 422 1 However however RB cord-000248-zueoyesj 422 2 , , , cord-000248-zueoyesj 422 3 other other JJ cord-000248-zueoyesj 422 4 partners partner NNS cord-000248-zueoyesj 422 5 of of IN cord-000248-zueoyesj 422 6 PLK1 PLK1 NNP cord-000248-zueoyesj 422 7 appear appear VBP cord-000248-zueoyesj 422 8 and and CC cord-000248-zueoyesj 422 9 their -PRON- PRP$ cord-000248-zueoyesj 422 10 function function NN cord-000248-zueoyesj 422 11 in in IN cord-000248-zueoyesj 422 12 ' ' `` cord-000248-zueoyesj 422 13 mitotic mitotic JJ cord-000248-zueoyesj 422 14 cell cell NN cord-000248-zueoyesj 422 15 cycle cycle NN cord-000248-zueoyesj 422 16 ' ' '' cord-000248-zueoyesj 422 17 ( ( -LRB- cord-000248-zueoyesj 422 18 pvalue pvalue NNP cord-000248-zueoyesj 422 19 = = SYM cord-000248-zueoyesj 422 20 0.0003 0.0003 CD cord-000248-zueoyesj 422 21 , , , cord-000248-zueoyesj 422 22 Bayes Bayes NNP cord-000248-zueoyesj 422 23 Factor Factor NNP cord-000248-zueoyesj 422 24 5 5 CD cord-000248-zueoyesj 422 25 ) ) -RRB- cord-000248-zueoyesj 422 26 is be VBZ cord-000248-zueoyesj 422 27 increasingly increasingly RB cord-000248-zueoyesj 422 28 present present JJ cord-000248-zueoyesj 422 29 ( ( -LRB- cord-000248-zueoyesj 422 30 in in IN cord-000248-zueoyesj 422 31 particular particular JJ cord-000248-zueoyesj 422 32 , , , cord-000248-zueoyesj 422 33 the the DT cord-000248-zueoyesj 422 34 M M NNP cord-000248-zueoyesj 422 35 phase phase NN cord-000248-zueoyesj 422 36 of of IN cord-000248-zueoyesj 422 37 the the DT cord-000248-zueoyesj 422 38 mitotic mitotic JJ cord-000248-zueoyesj 422 39 cell cell NN cord-000248-zueoyesj 422 40 cycle cycle NN cord-000248-zueoyesj 422 41 ) ) -RRB- cord-000248-zueoyesj 422 42 . . . cord-000248-zueoyesj 423 1 The the DT cord-000248-zueoyesj 423 2 details detail NNS cord-000248-zueoyesj 423 3 of of IN cord-000248-zueoyesj 423 4 the the DT cord-000248-zueoyesj 423 5 Gene Gene NNP cord-000248-zueoyesj 423 6 Ontology Ontology NNP cord-000248-zueoyesj 423 7 terms term NNS cord-000248-zueoyesj 423 8 which which WDT cord-000248-zueoyesj 423 9 are be VBP cord-000248-zueoyesj 423 10 significant significant JJ cord-000248-zueoyesj 423 11 and and CC cord-000248-zueoyesj 423 12 the the DT cord-000248-zueoyesj 423 13 genes gene NNS cord-000248-zueoyesj 423 14 associated associate VBN cord-000248-zueoyesj 423 15 to to IN cord-000248-zueoyesj 423 16 them -PRON- PRP cord-000248-zueoyesj 423 17 are be VBP cord-000248-zueoyesj 423 18 listed list VBN cord-000248-zueoyesj 423 19 in in IN cord-000248-zueoyesj 423 20 Table Table NNP cord-000248-zueoyesj 423 21 2 2 CD cord-000248-zueoyesj 423 22 . . . cord-000248-zueoyesj 424 1 The the DT cord-000248-zueoyesj 424 2 analysis analysis NN cord-000248-zueoyesj 424 3 using use VBG cord-000248-zueoyesj 424 4 g g NN cord-000248-zueoyesj 424 5 : : : cord-000248-zueoyesj 424 6 Profiler profiler NN cord-000248-zueoyesj 424 7 largely largely RB cord-000248-zueoyesj 424 8 coincides coincide VBZ cord-000248-zueoyesj 424 9 with with IN cord-000248-zueoyesj 424 10 the the DT cord-000248-zueoyesj 424 11 analysis analysis NN cord-000248-zueoyesj 424 12 using use VBG cord-000248-zueoyesj 424 13 GATHER gather VB cord-000248-zueoyesj 424 14 , , , cord-000248-zueoyesj 424 15 however however RB cord-000248-zueoyesj 424 16 , , , cord-000248-zueoyesj 424 17 it -PRON- PRP cord-000248-zueoyesj 424 18 retrieves retrieve VBZ cord-000248-zueoyesj 424 19 12 12 CD cord-000248-zueoyesj 424 20 genes gene NNS cord-000248-zueoyesj 424 21 associated associate VBN cord-000248-zueoyesj 424 22 with with IN cord-000248-zueoyesj 424 23 the the DT cord-000248-zueoyesj 424 24 M M NNP cord-000248-zueoyesj 424 25 phase phase NN cord-000248-zueoyesj 424 26 of of IN cord-000248-zueoyesj 424 27 mitotic mitotic JJ cord-000248-zueoyesj 424 28 cell cell NN cord-000248-zueoyesj 424 29 cycle cycle NN cord-000248-zueoyesj 424 30 , , , cord-000248-zueoyesj 424 31 namely namely RB cord-000248-zueoyesj 424 32 : : : cord-000248-zueoyesj 424 33 AURKA AURKA NNP cord-000248-zueoyesj 424 34 and and CC cord-000248-zueoyesj 424 35 AURKB AURKB NNP cord-000248-zueoyesj 424 36 [ [ -LRB- cord-000248-zueoyesj 424 37 227 227 CD cord-000248-zueoyesj 424 38 , , , cord-000248-zueoyesj 424 39 228 228 CD cord-000248-zueoyesj 424 40 , , , cord-000248-zueoyesj 424 41 229 229 CD cord-000248-zueoyesj 424 42 ] ] -RRB- cord-000248-zueoyesj 424 43 , , . cord-000248-zueoyesj 425 1 BUB1 BUB1 NNP cord-000248-zueoyesj 425 2 [ [ -LRB- cord-000248-zueoyesj 425 3 230 230 CD cord-000248-zueoyesj 425 4 , , , cord-000248-zueoyesj 425 5 231 231 CD cord-000248-zueoyesj 425 6 ] ] -RRB- cord-000248-zueoyesj 425 7 , , , cord-000248-zueoyesj 425 8 CDCA5A CDCA5A NNP cord-000248-zueoyesj 425 9 / / SYM cord-000248-zueoyesj 425 10 Sororin Sororin NNP cord-000248-zueoyesj 425 11 / / SYM cord-000248-zueoyesj 425 12 p35 p35 CD cord-000248-zueoyesj 425 13 [ [ -LRB- cord-000248-zueoyesj 425 14 232 232 CD cord-000248-zueoyesj 425 15 ] ] -RRB- cord-000248-zueoyesj 425 16 , , , cord-000248-zueoyesj 425 17 CDC7 CDC7 NNP cord-000248-zueoyesj 425 18 [ [ -LRB- cord-000248-zueoyesj 425 19 233 233 CD cord-000248-zueoyesj 425 20 , , , cord-000248-zueoyesj 425 21 234 234 CD cord-000248-zueoyesj 425 22 ] ] -RRB- cord-000248-zueoyesj 425 23 , , , cord-000248-zueoyesj 425 24 CHEK1 CHEK1 NNP cord-000248-zueoyesj 425 25 [ [ -LRB- cord-000248-zueoyesj 425 26 235 235 CD cord-000248-zueoyesj 425 27 ] ] -RRB- cord-000248-zueoyesj 425 28 , , , cord-000248-zueoyesj 425 29 KIF23 KIF23 NNP cord-000248-zueoyesj 425 30 / / SYM cord-000248-zueoyesj 425 31 MKLP-1 MKLP-1 NNP cord-000248-zueoyesj 425 32 [ [ -LRB- cord-000248-zueoyesj 425 33 227 227 CD cord-000248-zueoyesj 425 34 , , , cord-000248-zueoyesj 425 35 236 236 CD cord-000248-zueoyesj 425 36 , , , cord-000248-zueoyesj 425 37 237 237 CD cord-000248-zueoyesj 425 38 ] ] -RRB- cord-000248-zueoyesj 425 39 , , , cord-000248-zueoyesj 425 40 MAP9/ MAP9/ NNP cord-000248-zueoyesj 426 1 ASAP ASAP NNP cord-000248-zueoyesj 426 2 [ [ -LRB- cord-000248-zueoyesj 426 3 238 238 CD cord-000248-zueoyesj 426 4 , , , cord-000248-zueoyesj 426 5 239 239 CD cord-000248-zueoyesj 426 6 ] ] -RRB- cord-000248-zueoyesj 426 7 , , , cord-000248-zueoyesj 426 8 NCAPD3 ncapd3 CD cord-000248-zueoyesj 426 9 , , , cord-000248-zueoyesj 427 1 NCAPG2 ncapg2 UH cord-000248-zueoyesj 428 1 [ [ -LRB- cord-000248-zueoyesj 428 2 240 240 CD cord-000248-zueoyesj 428 3 ] ] -RRB- cord-000248-zueoyesj 428 4 , , . cord-000248-zueoyesj 429 1 NEK6 NEK6 NNP cord-000248-zueoyesj 429 2 [ [ -LRB- cord-000248-zueoyesj 429 3 241 241 CD cord-000248-zueoyesj 429 4 , , , cord-000248-zueoyesj 429 5 242 242 CD cord-000248-zueoyesj 429 6 , , , cord-000248-zueoyesj 429 7 243 243 CD cord-000248-zueoyesj 429 8 , , , cord-000248-zueoyesj 429 9 244 244 CD cord-000248-zueoyesj 429 10 ] ] -RRB- cord-000248-zueoyesj 429 11 , , , cord-000248-zueoyesj 429 12 PLK1 PLK1 NNP cord-000248-zueoyesj 429 13 [ [ -LRB- cord-000248-zueoyesj 429 14 147 147 CD cord-000248-zueoyesj 429 15 , , , cord-000248-zueoyesj 429 16 245 245 CD cord-000248-zueoyesj 429 17 , , , cord-000248-zueoyesj 429 18 246 246 CD cord-000248-zueoyesj 429 19 ] ] -RRB- cord-000248-zueoyesj 429 20 , , , cord-000248-zueoyesj 429 21 PTTG1 PTTG1 NNS cord-000248-zueoyesj 429 22 / / SYM cord-000248-zueoyesj 429 23 Securin Securin NNP cord-000248-zueoyesj 429 24 [ [ -LRB- cord-000248-zueoyesj 429 25 247 247 CD cord-000248-zueoyesj 429 26 ] ] -RRB- cord-000248-zueoyesj 429 27 , , , cord-000248-zueoyesj 429 28 SHC1 SHC1 NNP cord-000248-zueoyesj 429 29 / / SYM cord-000248-zueoyesj 429 30 p66 p66 XX cord-000248-zueoyesj 429 31 [ [ -LRB- cord-000248-zueoyesj 429 32 248 248 CD cord-000248-zueoyesj 429 33 , , , cord-000248-zueoyesj 429 34 249 249 CD cord-000248-zueoyesj 429 35 , , , cord-000248-zueoyesj 429 36 250 250 CD cord-000248-zueoyesj 429 37 ] ] -RRB- cord-000248-zueoyesj 430 1 ( ( -LRB- cord-000248-zueoyesj 430 2 discussed discuss VBN cord-000248-zueoyesj 430 3 in in IN cord-000248-zueoyesj 430 4 the the DT cord-000248-zueoyesj 430 5 context context NN cord-000248-zueoyesj 430 6 of of IN cord-000248-zueoyesj 430 7 SHC4 SHC4 NNP cord-000248-zueoyesj 430 8 signalling signalling NN cord-000248-zueoyesj 430 9 ) ) -RRB- cord-000248-zueoyesj 430 10 , , , cord-000248-zueoyesj 430 11 and and CC cord-000248-zueoyesj 430 12 TFDP1 TFDP1 NNP cord-000248-zueoyesj 430 13 / / SYM cord-000248-zueoyesj 430 14 DP-1 DP-1 NNP cord-000248-zueoyesj 430 15 [ [ -LRB- cord-000248-zueoyesj 430 16 251 251 CD cord-000248-zueoyesj 430 17 ] ] -RRB- cord-000248-zueoyesj 430 18 . . . cord-000248-zueoyesj 431 1 These these DT cord-000248-zueoyesj 431 2 are be VBP cord-000248-zueoyesj 431 3 a a DT cord-000248-zueoyesj 431 4 significant significant JJ cord-000248-zueoyesj 431 5 finding finding NN cord-000248-zueoyesj 431 6 by by IN cord-000248-zueoyesj 431 7 g g NN cord-000248-zueoyesj 431 8 : : : cord-000248-zueoyesj 431 9 Profiler profiler NN cord-000248-zueoyesj 431 10 ( ( -LRB- cord-000248-zueoyesj 431 11 p p NN cord-000248-zueoyesj 431 12 - - HYPH cord-000248-zueoyesj 431 13 value value NN cord-000248-zueoyesj 431 14 = = SYM cord-000248-zueoyesj 431 15 4.03E-07 4.03e-07 CD cord-000248-zueoyesj 431 16 ) ) -RRB- cord-000248-zueoyesj 431 17 . . . cord-000248-zueoyesj 432 1 We -PRON- PRP cord-000248-zueoyesj 432 2 have have VBP cord-000248-zueoyesj 432 3 listed list VBN cord-000248-zueoyesj 432 4 above above IN cord-000248-zueoyesj 432 5 some some DT cord-000248-zueoyesj 432 6 of of IN cord-000248-zueoyesj 432 7 the the DT cord-000248-zueoyesj 432 8 genes gene NNS cord-000248-zueoyesj 432 9 gene gene NN cord-000248-zueoyesj 432 10 associated associate VBN cord-000248-zueoyesj 432 11 to to IN cord-000248-zueoyesj 432 12 the the DT cord-000248-zueoyesj 432 13 M M NNP cord-000248-zueoyesj 432 14 phase phase NN cord-000248-zueoyesj 432 15 of of IN cord-000248-zueoyesj 432 16 mitotic mitotic JJ cord-000248-zueoyesj 432 17 cell cell NN cord-000248-zueoyesj 432 18 cycle cycle NN cord-000248-zueoyesj 432 19 and and CC cord-000248-zueoyesj 432 20 associated associated JJ cord-000248-zueoyesj 432 21 references reference NNS cord-000248-zueoyesj 432 22 which which WDT cord-000248-zueoyesj 432 23 are be VBP cord-000248-zueoyesj 432 24 either either DT cord-000248-zueoyesj 432 25 to to IN cord-000248-zueoyesj 432 26 current current JJ cord-000248-zueoyesj 432 27 research research NN cord-000248-zueoyesj 432 28 in in IN cord-000248-zueoyesj 432 29 melanoma melanoma NN cord-000248-zueoyesj 432 30 and/or and/or CC cord-000248-zueoyesj 432 31 its -PRON- PRP$ cord-000248-zueoyesj 432 32 biological biological JJ cord-000248-zueoyesj 432 33 function function NN cord-000248-zueoyesj 432 34 . . . cord-000248-zueoyesj 433 1 We -PRON- PRP cord-000248-zueoyesj 433 2 now now RB cord-000248-zueoyesj 433 3 list list VBP cord-000248-zueoyesj 433 4 other other JJ cord-000248-zueoyesj 433 5 genes gene NNS cord-000248-zueoyesj 433 6 which which WDT cord-000248-zueoyesj 433 7 have have VBP cord-000248-zueoyesj 433 8 been be VBN cord-000248-zueoyesj 433 9 associated associate VBN cord-000248-zueoyesj 433 10 with with IN cord-000248-zueoyesj 433 11 the the DT cord-000248-zueoyesj 433 12 term term NN cord-000248-zueoyesj 433 13 ' ' `` cord-000248-zueoyesj 433 14 cell cell NN cord-000248-zueoyesj 433 15 proliferation proliferation NN cord-000248-zueoyesj 433 16 ' ' '' cord-000248-zueoyesj 433 17 by by IN cord-000248-zueoyesj 433 18 GATHER gather NN cord-000248-zueoyesj 433 19 . . . cord-000248-zueoyesj 434 1 These these DT cord-000248-zueoyesj 434 2 genes gene NNS cord-000248-zueoyesj 434 3 are be VBP cord-000248-zueoyesj 434 4 : : : cord-000248-zueoyesj 434 5 ARPC1B ARPC1B NNP cord-000248-zueoyesj 434 6 [ [ -LRB- cord-000248-zueoyesj 434 7 252 252 CD cord-000248-zueoyesj 434 8 ] ] -RRB- cord-000248-zueoyesj 434 9 , , , cord-000248-zueoyesj 434 10 ARPC2 ARPC2 NNP cord-000248-zueoyesj 434 11 ( ( -LRB- cord-000248-zueoyesj 434 12 which which WDT cord-000248-zueoyesj 434 13 , , , cord-000248-zueoyesj 434 14 together together RB cord-000248-zueoyesj 434 15 with with IN cord-000248-zueoyesj 434 16 SPP1 SPP1 NNS cord-000248-zueoyesj 434 17 , , , cord-000248-zueoyesj 434 18 is be VBZ cord-000248-zueoyesj 434 19 also also RB cord-000248-zueoyesj 434 20 in in IN cord-000248-zueoyesj 434 21 the the DT cord-000248-zueoyesj 434 22 novel novel JJ cord-000248-zueoyesj 434 23 5-biomarker 5-biomarker CD cord-000248-zueoyesj 434 24 panel panel NN cord-000248-zueoyesj 434 25 of of IN cord-000248-zueoyesj 434 26 Kashani Kashani NNP cord-000248-zueoyesj 434 27 - - HYPH cord-000248-zueoyesj 434 28 Sabet Sabet NNP cord-000248-zueoyesj 434 29 et et NNP cord-000248-zueoyesj 434 30 al al NNP cord-000248-zueoyesj 434 31 . . . cord-000248-zueoyesj 435 1 [ [ -LRB- cord-000248-zueoyesj 435 2 253 253 CD cord-000248-zueoyesj 435 3 ] ] -RRB- cord-000248-zueoyesj 435 4 ) ) -RRB- cord-000248-zueoyesj 435 5 , , , cord-000248-zueoyesj 435 6 BCCIP BCCIP NNP cord-000248-zueoyesj 435 7 ( ( -LRB- cord-000248-zueoyesj 435 8 BRCA2 BRCA2 NNP cord-000248-zueoyesj 435 9 and and CC cord-000248-zueoyesj 435 10 CDKN1A cdkn1a NN cord-000248-zueoyesj 435 11 - - HYPH cord-000248-zueoyesj 435 12 interacting interact VBG cord-000248-zueoyesj 435 13 protein)/P21-and protein)/p21-and NN cord-000248-zueoyesj 435 14 CDK- CDK- NNP cord-000248-zueoyesj 435 15 Figure Figure NNP cord-000248-zueoyesj 435 16 10 10 CD cord-000248-zueoyesj 435 17 . . . cord-000248-zueoyesj 436 1 Expression expression NN cord-000248-zueoyesj 436 2 of of IN cord-000248-zueoyesj 436 3 a a DT cord-000248-zueoyesj 436 4 probe probe NN cord-000248-zueoyesj 436 5 for for IN cord-000248-zueoyesj 436 6 CLDN1 CLDN1 NNS cord-000248-zueoyesj 437 1 ( ( -LRB- cord-000248-zueoyesj 437 2 Claudin Claudin NNP cord-000248-zueoyesj 437 3 1 1 CD cord-000248-zueoyesj 437 4 ) ) -RRB- cord-000248-zueoyesj 437 5 ( ( -LRB- cord-000248-zueoyesj 437 6 y y NN cord-000248-zueoyesj 437 7 - - HYPH cord-000248-zueoyesj 437 8 axis axis NN cord-000248-zueoyesj 437 9 ) ) -RRB- cord-000248-zueoyesj 437 10 as as IN cord-000248-zueoyesj 437 11 a a DT cord-000248-zueoyesj 437 12 function function NN cord-000248-zueoyesj 437 13 of of IN cord-000248-zueoyesj 437 14 a a DT cord-000248-zueoyesj 437 15 probe probe NN cord-000248-zueoyesj 437 16 for for IN cord-000248-zueoyesj 437 17 Aquaporin Aquaporin NNP cord-000248-zueoyesj 437 18 3 3 CD cord-000248-zueoyesj 437 19 ( ( -LRB- cord-000248-zueoyesj 437 20 x x NN cord-000248-zueoyesj 437 21 - - NN cord-000248-zueoyesj 437 22 axis axis NN cord-000248-zueoyesj 437 23 ) ) -RRB- cord-000248-zueoyesj 437 24 . . . cord-000248-zueoyesj 438 1 Other other JJ cord-000248-zueoyesj 438 2 members member NNS cord-000248-zueoyesj 438 3 of of IN cord-000248-zueoyesj 438 4 the the DT cord-000248-zueoyesj 438 5 aquaporin aquaporin NNP cord-000248-zueoyesj 438 6 family family NN cord-000248-zueoyesj 438 7 of of IN cord-000248-zueoyesj 438 8 proteins protein NNS cord-000248-zueoyesj 438 9 have have VBP cord-000248-zueoyesj 438 10 a a DT cord-000248-zueoyesj 438 11 similar similar JJ cord-000248-zueoyesj 438 12 behaviour behaviour NN cord-000248-zueoyesj 438 13 . . . cord-000248-zueoyesj 439 1 AQP3 AQP3 NNP cord-000248-zueoyesj 439 2 , , , cord-000248-zueoyesj 439 3 together together RB cord-000248-zueoyesj 439 4 with with IN cord-000248-zueoyesj 439 5 CLDN1 CLDN1 NNS cord-000248-zueoyesj 439 6 are be VBP cord-000248-zueoyesj 439 7 key key JJ cord-000248-zueoyesj 439 8 components component NNS cord-000248-zueoyesj 439 9 of of IN cord-000248-zueoyesj 439 10 the the DT cord-000248-zueoyesj 439 11 tight tight JJ cord-000248-zueoyesj 439 12 junction junction NN cord-000248-zueoyesj 439 13 complexes complex NNS cord-000248-zueoyesj 439 14 of of IN cord-000248-zueoyesj 439 15 the the DT cord-000248-zueoyesj 439 16 epidermis epidermis NN cord-000248-zueoyesj 439 17 and and CC cord-000248-zueoyesj 439 18 their -PRON- PRP$ cord-000248-zueoyesj 439 19 joint joint JJ cord-000248-zueoyesj 439 20 loss loss NN cord-000248-zueoyesj 439 21 of of IN cord-000248-zueoyesj 439 22 expression expression NN cord-000248-zueoyesj 439 23 seem seem VBP cord-000248-zueoyesj 439 24 to to TO cord-000248-zueoyesj 439 25 be be VB cord-000248-zueoyesj 439 26 related relate VBN cord-000248-zueoyesj 439 27 to to IN cord-000248-zueoyesj 439 28 a a DT cord-000248-zueoyesj 439 29 transition transition NN cord-000248-zueoyesj 439 30 to to IN cord-000248-zueoyesj 439 31 a a DT cord-000248-zueoyesj 439 32 more more RBR cord-000248-zueoyesj 439 33 malignant malignant JJ cord-000248-zueoyesj 439 34 phenotype phenotype NN cord-000248-zueoyesj 439 35 . . . cord-000248-zueoyesj 440 1 We -PRON- PRP cord-000248-zueoyesj 440 2 use use VBP cord-000248-zueoyesj 440 3 the the DT cord-000248-zueoyesj 440 4 same same JJ cord-000248-zueoyesj 440 5 color color NN cord-000248-zueoyesj 440 6 coding coding NN cord-000248-zueoyesj 440 7 as as IN cord-000248-zueoyesj 440 8 Figure figure NN cord-000248-zueoyesj 440 9 9 9 CD cord-000248-zueoyesj 440 10 . . . cord-000248-zueoyesj 441 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 442 1 /journal.pone.0012262.g010 /journal.pone.0012262.g010 : cord-000248-zueoyesj 442 2 associated associated JJ cord-000248-zueoyesj 442 3 protein protein NN cord-000248-zueoyesj 442 4 1 1 CD cord-000248-zueoyesj 442 5 ) ) -RRB- cord-000248-zueoyesj 442 6 [ [ -LRB- cord-000248-zueoyesj 442 7 254 254 CD cord-000248-zueoyesj 442 8 ] ] -RRB- cord-000248-zueoyesj 442 9 , , . cord-000248-zueoyesj 443 1 BST2 BST2 NNP cord-000248-zueoyesj 443 2 / / SYM cord-000248-zueoyesj 443 3 Bone Bone NNP cord-000248-zueoyesj 443 4 marrow marrow NN cord-000248-zueoyesj 443 5 stromal stromal NN cord-000248-zueoyesj 443 6 antigen antigen NN cord-000248-zueoyesj 443 7 2 2 CD cord-000248-zueoyesj 443 8 / / SYM cord-000248-zueoyesj 443 9 Tetherin Tetherin NNP cord-000248-zueoyesj 443 10 [ [ -LRB- cord-000248-zueoyesj 443 11 255 255 CD cord-000248-zueoyesj 443 12 ] ] -RRB- cord-000248-zueoyesj 443 13 , , . cord-000248-zueoyesj 444 1 CCL3 CCL3 NNP cord-000248-zueoyesj 444 2 / / SYM cord-000248-zueoyesj 444 3 MIP-1alpha MIP-1alpha NNP cord-000248-zueoyesj 444 4 [ [ -LRB- cord-000248-zueoyesj 444 5 256 256 CD cord-000248-zueoyesj 444 6 , , , cord-000248-zueoyesj 444 7 257 257 CD cord-000248-zueoyesj 444 8 , , , cord-000248-zueoyesj 444 9 258 258 CD cord-000248-zueoyesj 444 10 ] ] -RRB- cord-000248-zueoyesj 445 1 , , , cord-000248-zueoyesj 445 2 CCT4 CCT4 NNP cord-000248-zueoyesj 445 3 , , , cord-000248-zueoyesj 445 4 CDCA5 CDCA5 NNP cord-000248-zueoyesj 445 5 / / SYM cord-000248-zueoyesj 445 6 Sororin Sororin NNP cord-000248-zueoyesj 445 7 [ [ -LRB- cord-000248-zueoyesj 445 8 259 259 CD cord-000248-zueoyesj 445 9 , , , cord-000248-zueoyesj 445 10 260 260 CD cord-000248-zueoyesj 445 11 , , , cord-000248-zueoyesj 445 12 261 261 CD cord-000248-zueoyesj 445 13 , , , cord-000248-zueoyesj 445 14 262 262 CD cord-000248-zueoyesj 445 15 , , , cord-000248-zueoyesj 445 16 263 263 CD cord-000248-zueoyesj 445 17 ] ] -RRB- cord-000248-zueoyesj 445 18 , , . cord-000248-zueoyesj 446 1 CENPF CENPF NNP cord-000248-zueoyesj 446 2 / / SYM cord-000248-zueoyesj 446 3 Mitosin Mitosin NNP cord-000248-zueoyesj 446 4 [ [ -LRB- cord-000248-zueoyesj 446 5 264 264 CD cord-000248-zueoyesj 446 6 ] ] -RRB- cord-000248-zueoyesj 446 7 , , , cord-000248-zueoyesj 446 8 CXCL1 cxcl1 NN cord-000248-zueoyesj 446 9 / / SYM cord-000248-zueoyesj 446 10 chemokine chemokine NN cord-000248-zueoyesj 446 11 ( ( -LRB- cord-000248-zueoyesj 446 12 C C NNP cord-000248-zueoyesj 446 13 - - HYPH cord-000248-zueoyesj 446 14 X x NN cord-000248-zueoyesj 446 15 - - HYPH cord-000248-zueoyesj 446 16 C c NN cord-000248-zueoyesj 446 17 motif motif NN cord-000248-zueoyesj 446 18 ) ) -RRB- cord-000248-zueoyesj 447 1 ligand ligand NNP cord-000248-zueoyesj 447 2 1 1 CD cord-000248-zueoyesj 447 3 ( ( -LRB- cord-000248-zueoyesj 447 4 melanoma melanoma NN cord-000248-zueoyesj 447 5 growth growth NN cord-000248-zueoyesj 447 6 stimulating stimulate VBG cord-000248-zueoyesj 447 7 activity activity NN cord-000248-zueoyesj 447 8 , , , cord-000248-zueoyesj 447 9 alpha alpha NN cord-000248-zueoyesj 447 10 ) ) -RRB- cord-000248-zueoyesj 447 11 [ [ -LRB- cord-000248-zueoyesj 447 12 265 265 CD cord-000248-zueoyesj 447 13 , , , cord-000248-zueoyesj 447 14 266 266 CD cord-000248-zueoyesj 447 15 , , , cord-000248-zueoyesj 447 16 267 267 CD cord-000248-zueoyesj 447 17 , , , cord-000248-zueoyesj 447 18 268 268 CD cord-000248-zueoyesj 447 19 , , , cord-000248-zueoyesj 447 20 269 269 CD cord-000248-zueoyesj 447 21 , , , cord-000248-zueoyesj 447 22 270 270 CD cord-000248-zueoyesj 447 23 , , , cord-000248-zueoyesj 447 24 271 271 CD cord-000248-zueoyesj 447 25 , , , cord-000248-zueoyesj 447 26 272 272 CD cord-000248-zueoyesj 447 27 , , , cord-000248-zueoyesj 447 28 273 273 CD cord-000248-zueoyesj 447 29 , , , cord-000248-zueoyesj 447 30 274 274 CD cord-000248-zueoyesj 447 31 , , , cord-000248-zueoyesj 447 32 275 275 CD cord-000248-zueoyesj 447 33 , , , cord-000248-zueoyesj 447 34 276 276 CD cord-000248-zueoyesj 447 35 , , , cord-000248-zueoyesj 447 36 277 277 CD cord-000248-zueoyesj 447 37 , , , cord-000248-zueoyesj 447 38 278 278 CD cord-000248-zueoyesj 447 39 , , , cord-000248-zueoyesj 447 40 279 279 CD cord-000248-zueoyesj 447 41 , , , cord-000248-zueoyesj 447 42 280 280 CD cord-000248-zueoyesj 447 43 , , , cord-000248-zueoyesj 447 44 281 281 CD cord-000248-zueoyesj 447 45 , , , cord-000248-zueoyesj 447 46 282 282 CD cord-000248-zueoyesj 447 47 , , , cord-000248-zueoyesj 447 48 283 283 CD cord-000248-zueoyesj 447 49 , , , cord-000248-zueoyesj 447 50 284 284 CD cord-000248-zueoyesj 447 51 , , , cord-000248-zueoyesj 447 52 285 285 CD cord-000248-zueoyesj 447 53 ] ] -RRB- cord-000248-zueoyesj 447 54 ( ( -LRB- cord-000248-zueoyesj 447 55 in in IN cord-000248-zueoyesj 448 1 uveal uveal JJ cord-000248-zueoyesj 448 2 melanoma melanoma NN cord-000248-zueoyesj 448 3 see see VBP cord-000248-zueoyesj 448 4 [ [ -LRB- cord-000248-zueoyesj 448 5 286 286 CD cord-000248-zueoyesj 448 6 ] ] -RRB- cord-000248-zueoyesj 448 7 ) ) -RRB- cord-000248-zueoyesj 448 8 , , . cord-000248-zueoyesj 449 1 CXCL10 CXCL10 NNP cord-000248-zueoyesj 449 2 [ [ -LRB- cord-000248-zueoyesj 449 3 256 256 CD cord-000248-zueoyesj 449 4 ] ] -RRB- cord-000248-zueoyesj 449 5 , , . cord-000248-zueoyesj 450 1 FLT1 FLT1 NNP cord-000248-zueoyesj 450 2 / / SYM cord-000248-zueoyesj 450 3 VEGFR1 VEGFR1 NNP cord-000248-zueoyesj 450 4 [ [ -LRB- cord-000248-zueoyesj 450 5 287 287 CD cord-000248-zueoyesj 450 6 , , , cord-000248-zueoyesj 450 7 288 288 CD cord-000248-zueoyesj 450 8 , , , cord-000248-zueoyesj 450 9 289 289 CD cord-000248-zueoyesj 450 10 , , , cord-000248-zueoyesj 450 11 290 290 CD cord-000248-zueoyesj 450 12 , , , cord-000248-zueoyesj 450 13 291 291 CD cord-000248-zueoyesj 450 14 , , , cord-000248-zueoyesj 450 15 292 292 CD cord-000248-zueoyesj 450 16 , , , cord-000248-zueoyesj 450 17 293 293 CD cord-000248-zueoyesj 450 18 , , , cord-000248-zueoyesj 450 19 294 294 CD cord-000248-zueoyesj 450 20 , , , cord-000248-zueoyesj 450 21 295 295 CD cord-000248-zueoyesj 450 22 , , , cord-000248-zueoyesj 450 23 296 296 CD cord-000248-zueoyesj 450 24 , , , cord-000248-zueoyesj 450 25 297 297 CD cord-000248-zueoyesj 450 26 , , , cord-000248-zueoyesj 450 27 298 298 CD cord-000248-zueoyesj 450 28 , , , cord-000248-zueoyesj 450 29 299 299 CD cord-000248-zueoyesj 450 30 ] ] -RRB- cord-000248-zueoyesj 450 31 , , , cord-000248-zueoyesj 450 32 FTH1 FTH1 NNP cord-000248-zueoyesj 450 33 / / SYM cord-000248-zueoyesj 450 34 Ferritin Ferritin NNP cord-000248-zueoyesj 450 35 Heavy Heavy NNP cord-000248-zueoyesj 450 36 Chain Chain NNP cord-000248-zueoyesj 450 37 [ [ -LRB- cord-000248-zueoyesj 450 38 300 300 CD cord-000248-zueoyesj 450 39 , , , cord-000248-zueoyesj 450 40 301 301 CD cord-000248-zueoyesj 450 41 , , , cord-000248-zueoyesj 450 42 302 302 CD cord-000248-zueoyesj 450 43 ] ] -RRB- cord-000248-zueoyesj 450 44 ( ( -LRB- cord-000248-zueoyesj 450 45 which which WDT cord-000248-zueoyesj 450 46 may may MD cord-000248-zueoyesj 450 47 indicate indicate VB cord-000248-zueoyesj 450 48 a a DT cord-000248-zueoyesj 450 49 necessary necessary JJ cord-000248-zueoyesj 450 50 condition condition NN cord-000248-zueoyesj 450 51 for for IN cord-000248-zueoyesj 450 52 the the DT cord-000248-zueoyesj 450 53 mainainance mainainance NN cord-000248-zueoyesj 450 54 of of IN cord-000248-zueoyesj 450 55 iron iron NN cord-000248-zueoyesj 450 56 sequestration sequestration NN cord-000248-zueoyesj 450 57 and and CC cord-000248-zueoyesj 450 58 suppression suppression NN cord-000248-zueoyesj 450 59 of of IN cord-000248-zueoyesj 450 60 reactive reactive JJ cord-000248-zueoyesj 450 61 oxygen oxygen NN cord-000248-zueoyesj 450 62 species species NN cord-000248-zueoyesj 450 63 accumulation accumulation NN cord-000248-zueoyesj 450 64 [ [ -LRB- cord-000248-zueoyesj 450 65 303 303 CD cord-000248-zueoyesj 450 66 ] ] -RRB- cord-000248-zueoyesj 450 67 ) ) -RRB- cord-000248-zueoyesj 450 68 , , , cord-000248-zueoyesj 450 69 FPRL1 FPRL1 NNP cord-000248-zueoyesj 450 70 , , , cord-000248-zueoyesj 450 71 LIG3 LIG3 NNP cord-000248-zueoyesj 450 72 / / SYM cord-000248-zueoyesj 450 73 DNA DNA NNP cord-000248-zueoyesj 450 74 Ligase Ligase NNP cord-000248-zueoyesj 450 75 3 3 CD cord-000248-zueoyesj 450 76 [ [ -LRB- cord-000248-zueoyesj 450 77 304 304 CD cord-000248-zueoyesj 450 78 ] ] -RRB- cord-000248-zueoyesj 450 79 ( ( -LRB- cord-000248-zueoyesj 451 1 which which WDT cord-000248-zueoyesj 451 2 , , , cord-000248-zueoyesj 451 3 together together RB cord-000248-zueoyesj 451 4 with with IN cord-000248-zueoyesj 451 5 XPA XPA NNP cord-000248-zueoyesj 451 6 and and CC cord-000248-zueoyesj 451 7 ERCC5 ERCC5 NNP cord-000248-zueoyesj 451 8 is be VBZ cord-000248-zueoyesj 451 9 associated associate VBN cord-000248-zueoyesj 451 10 to to IN cord-000248-zueoyesj 451 11 DNA dna NN cord-000248-zueoyesj 451 12 repair repair NN cord-000248-zueoyesj 451 13 in in IN cord-000248-zueoyesj 451 14 ionizing ionize VBG cord-000248-zueoyesj 451 15 radition radition NN cord-000248-zueoyesj 451 16 studies study NNS cord-000248-zueoyesj 451 17 [ [ -LRB- cord-000248-zueoyesj 451 18 305 305 CD cord-000248-zueoyesj 451 19 ] ] -RRB- cord-000248-zueoyesj 451 20 ) ) -RRB- cord-000248-zueoyesj 451 21 , , , cord-000248-zueoyesj 451 22 MCMDC1 mcmdc1 NN cord-000248-zueoyesj 451 23 , , , cord-000248-zueoyesj 451 24 PSEN2 psen2 FW cord-000248-zueoyesj 451 25 , , , cord-000248-zueoyesj 452 1 NRP2 NRP2 NNP cord-000248-zueoyesj 452 2 / / SYM cord-000248-zueoyesj 452 3 Neuropilin Neuropilin NNP cord-000248-zueoyesj 452 4 2 2 CD cord-000248-zueoyesj 452 5 / / SYM cord-000248-zueoyesj 452 6 Vascular vascular JJ cord-000248-zueoyesj 452 7 endothelial endothelial JJ cord-000248-zueoyesj 452 8 cell cell NN cord-000248-zueoyesj 452 9 growth growth NN cord-000248-zueoyesj 452 10 factor factor NN cord-000248-zueoyesj 452 11 165 165 CD cord-000248-zueoyesj 452 12 receptor receptor NN cord-000248-zueoyesj 452 13 2 2 CD cord-000248-zueoyesj 452 14 [ [ -LRB- cord-000248-zueoyesj 452 15 306 306 CD cord-000248-zueoyesj 452 16 , , , cord-000248-zueoyesj 452 17 307 307 CD cord-000248-zueoyesj 452 18 , , , cord-000248-zueoyesj 452 19 308 308 CD cord-000248-zueoyesj 452 20 ] ] -RRB- cord-000248-zueoyesj 452 21 , , , cord-000248-zueoyesj 452 22 SEMA6A SEMA6A NNP cord-000248-zueoyesj 452 23 ( ( -LRB- cord-000248-zueoyesj 452 24 a a DT cord-000248-zueoyesj 452 25 member member NN cord-000248-zueoyesj 452 26 of of IN cord-000248-zueoyesj 452 27 the the DT cord-000248-zueoyesj 452 28 Semaphorin Semaphorin NNP cord-000248-zueoyesj 452 29 family family NN cord-000248-zueoyesj 452 30 , , , cord-000248-zueoyesj 452 31 of of IN cord-000248-zueoyesj 452 32 increasing increase VBG cord-000248-zueoyesj 452 33 importance importance NN cord-000248-zueoyesj 452 34 in in IN cord-000248-zueoyesj 452 35 cancer cancer NN cord-000248-zueoyesj 452 36 research research NN cord-000248-zueoyesj 452 37 [ [ -LRB- cord-000248-zueoyesj 452 38 309 309 CD cord-000248-zueoyesj 452 39 , , , cord-000248-zueoyesj 452 40 310 310 CD cord-000248-zueoyesj 452 41 , , , cord-000248-zueoyesj 452 42 311 311 CD cord-000248-zueoyesj 452 43 ] ] -RRB- cord-000248-zueoyesj 452 44 and and CC cord-000248-zueoyesj 453 1 in in IN cord-000248-zueoyesj 453 2 particular particular JJ cord-000248-zueoyesj 453 3 due due IN cord-000248-zueoyesj 453 4 to to IN cord-000248-zueoyesj 453 5 its -PRON- PRP$ cord-000248-zueoyesj 453 6 observed observed JJ cord-000248-zueoyesj 453 7 upregulation upregulation NN cord-000248-zueoyesj 453 8 in in IN cord-000248-zueoyesj 453 9 undifferentiated undifferentiated JJ cord-000248-zueoyesj 453 10 embryonic embryonic JJ cord-000248-zueoyesj 453 11 stem stem NN cord-000248-zueoyesj 453 12 cells cell NNS cord-000248-zueoyesj 453 13 [ [ -LRB- cord-000248-zueoyesj 453 14 312 312 CD cord-000248-zueoyesj 453 15 ] ] -RRB- cord-000248-zueoyesj 453 16 ) ) -RRB- cord-000248-zueoyesj 453 17 , , , cord-000248-zueoyesj 453 18 SLAMF1 slamf1 NN cord-000248-zueoyesj 453 19 / / SYM cord-000248-zueoyesj 453 20 CD150 cd150 NN cord-000248-zueoyesj 453 21 ( ( -LRB- cord-000248-zueoyesj 453 22 a a DT cord-000248-zueoyesj 453 23 marker marker NN cord-000248-zueoyesj 453 24 associated associate VBN cord-000248-zueoyesj 453 25 with with IN cord-000248-zueoyesj 453 26 hematopoietic hematopoietic JJ cord-000248-zueoyesj 453 27 stem stem NN cord-000248-zueoyesj 453 28 cells cell NNS cord-000248-zueoyesj 453 29 [ [ -LRB- cord-000248-zueoyesj 453 30 313 313 CD cord-000248-zueoyesj 453 31 ] ] -RRB- cord-000248-zueoyesj 453 32 ) ) -RRB- cord-000248-zueoyesj 453 33 , , , cord-000248-zueoyesj 453 34 SPP1 SPP1 NNP cord-000248-zueoyesj 453 35 / / SYM cord-000248-zueoyesj 453 36 Osteopontin Osteopontin NNP cord-000248-zueoyesj 453 37 ( ( -LRB- cord-000248-zueoyesj 453 38 which which WDT cord-000248-zueoyesj 453 39 , , , cord-000248-zueoyesj 453 40 together together RB cord-000248-zueoyesj 453 41 with with IN cord-000248-zueoyesj 453 42 ARPC2 arpc2 NN cord-000248-zueoyesj 453 43 , , , cord-000248-zueoyesj 453 44 is be VBZ cord-000248-zueoyesj 453 45 also also RB cord-000248-zueoyesj 453 46 in in IN cord-000248-zueoyesj 453 47 the the DT cord-000248-zueoyesj 453 48 novel novel JJ cord-000248-zueoyesj 453 49 5-biomarker 5-biomarker CD cord-000248-zueoyesj 453 50 panel panel NN cord-000248-zueoyesj 453 51 of of IN cord-000248-zueoyesj 453 52 Kashani Kashani NNP cord-000248-zueoyesj 453 53 - - HYPH cord-000248-zueoyesj 453 54 Sabet Sabet NNP cord-000248-zueoyesj 453 55 et et NNP cord-000248-zueoyesj 453 56 al al NNP cord-000248-zueoyesj 453 57 . . . cord-000248-zueoyesj 454 1 [ [ -LRB- cord-000248-zueoyesj 454 2 253 253 CD cord-000248-zueoyesj 454 3 ] ] -RRB- cord-000248-zueoyesj 454 4 ) ) -RRB- cord-000248-zueoyesj 455 1 [ [ -LRB- cord-000248-zueoyesj 455 2 206 206 CD cord-000248-zueoyesj 455 3 , , , cord-000248-zueoyesj 455 4 207 207 CD cord-000248-zueoyesj 455 5 , , , cord-000248-zueoyesj 455 6 208 208 CD cord-000248-zueoyesj 455 7 , , , cord-000248-zueoyesj 455 8 209 209 CD cord-000248-zueoyesj 455 9 , , , cord-000248-zueoyesj 455 10 210 210 CD cord-000248-zueoyesj 455 11 , , , cord-000248-zueoyesj 455 12 211 211 CD cord-000248-zueoyesj 455 13 , , , cord-000248-zueoyesj 455 14 212 212 CD cord-000248-zueoyesj 455 15 ] ] -RRB- cord-000248-zueoyesj 456 1 [ [ -LRB- cord-000248-zueoyesj 456 2 206,207,208,209,210 206,207,208,209,210 CD cord-000248-zueoyesj 456 3 , , , cord-000248-zueoyesj 456 4 211,212,214,215,216,217,218,219,220,221,222,226,314,315,316,-317,318,319,320,321,322,323,324,325,326,327,328,329 211,212,214,215,216,217,218,219,220,221,222,226,314,315,316,-317,318,319,320,321,322,323,324,325,326,327,328,329 CD cord-000248-zueoyesj 456 5 ] ] -RRB- cord-000248-zueoyesj 457 1 , , , cord-000248-zueoyesj 457 2 STK6 STK6 NNP cord-000248-zueoyesj 457 3 [ [ -LRB- cord-000248-zueoyesj 457 4 230 230 CD cord-000248-zueoyesj 457 5 , , , cord-000248-zueoyesj 457 6 330 330 CD cord-000248-zueoyesj 457 7 ] ] -RRB- cord-000248-zueoyesj 457 8 , , , cord-000248-zueoyesj 457 9 and and CC cord-000248-zueoyesj 457 10 WARS war NNS cord-000248-zueoyesj 457 11 / / SYM cord-000248-zueoyesj 457 12 Tryptophanyl Tryptophanyl NNP cord-000248-zueoyesj 457 13 - - HYPH cord-000248-zueoyesj 457 14 tRNA trna NN cord-000248-zueoyesj 457 15 synthetise synthetise NN cord-000248-zueoyesj 457 16 [ [ -LRB- cord-000248-zueoyesj 457 17 331 331 CD cord-000248-zueoyesj 457 18 ] ] -RRB- cord-000248-zueoyesj 457 19 . . . cord-000248-zueoyesj 458 1 Figure figure NN cord-000248-zueoyesj 458 2 11 11 CD cord-000248-zueoyesj 458 3 shows show VBZ cord-000248-zueoyesj 458 4 a a DT cord-000248-zueoyesj 458 5 heat heat NN cord-000248-zueoyesj 458 6 map map NN cord-000248-zueoyesj 458 7 of of IN cord-000248-zueoyesj 458 8 discussed discuss VBN cord-000248-zueoyesj 458 9 gene gene NN cord-000248-zueoyesj 458 10 probes probe NNS cord-000248-zueoyesj 458 11 annotated annotate VBN cord-000248-zueoyesj 458 12 with with IN cord-000248-zueoyesj 458 13 functions function NNS cord-000248-zueoyesj 458 14 on on IN cord-000248-zueoyesj 458 15 cell cell NN cord-000248-zueoyesj 458 16 proliferation proliferation NN cord-000248-zueoyesj 458 17 . . . cord-000248-zueoyesj 459 1 The the DT cord-000248-zueoyesj 459 2 references reference NNS cord-000248-zueoyesj 459 3 provided provide VBN cord-000248-zueoyesj 459 4 next next RB cord-000248-zueoyesj 459 5 to to IN cord-000248-zueoyesj 459 6 each each DT cord-000248-zueoyesj 459 7 gene gene NN cord-000248-zueoyesj 459 8 help help NN cord-000248-zueoyesj 459 9 to to IN cord-000248-zueoyesj 459 10 related relate VBN cord-000248-zueoyesj 459 11 these these DT cord-000248-zueoyesj 459 12 upregulated upregulate VBN cord-000248-zueoyesj 459 13 genes gene NNS cord-000248-zueoyesj 459 14 in in IN cord-000248-zueoyesj 459 15 the the DT cord-000248-zueoyesj 459 16 context context NN cord-000248-zueoyesj 459 17 of of IN cord-000248-zueoyesj 459 18 current current JJ cord-000248-zueoyesj 459 19 research research NN cord-000248-zueoyesj 459 20 in in IN cord-000248-zueoyesj 459 21 melanoma melanoma NN cord-000248-zueoyesj 459 22 or or CC cord-000248-zueoyesj 459 23 with with IN cord-000248-zueoyesj 459 24 the the DT cord-000248-zueoyesj 459 25 M M NNP cord-000248-zueoyesj 459 26 phase phase NN cord-000248-zueoyesj 459 27 of of IN cord-000248-zueoyesj 459 28 mitotic mitotic JJ cord-000248-zueoyesj 459 29 cell cell NN cord-000248-zueoyesj 459 30 cycle cycle NN cord-000248-zueoyesj 459 31 , , , cord-000248-zueoyesj 459 32 showing show VBG cord-000248-zueoyesj 459 33 a a DT cord-000248-zueoyesj 459 34 high high JJ cord-000248-zueoyesj 459 35 degree degree NN cord-000248-zueoyesj 459 36 of of IN cord-000248-zueoyesj 459 37 correlation correlation NN cord-000248-zueoyesj 459 38 between between IN cord-000248-zueoyesj 459 39 our -PRON- PRP$ cord-000248-zueoyesj 459 40 results result NNS cord-000248-zueoyesj 459 41 and and CC cord-000248-zueoyesj 459 42 with with IN cord-000248-zueoyesj 459 43 published publish VBN cord-000248-zueoyesj 459 44 literature literature NN cord-000248-zueoyesj 459 45 . . . cord-000248-zueoyesj 460 1 Another another DT cord-000248-zueoyesj 460 2 microarray microarray NN cord-000248-zueoyesj 460 3 dataset dataset NN cord-000248-zueoyesj 460 4 we -PRON- PRP cord-000248-zueoyesj 460 5 have have VBP cord-000248-zueoyesj 460 6 selected select VBN cord-000248-zueoyesj 460 7 to to TO cord-000248-zueoyesj 460 8 evaluate evaluate VB cord-000248-zueoyesj 460 9 for for IN cord-000248-zueoyesj 460 10 the the DT cord-000248-zueoyesj 460 11 relevance relevance NN cord-000248-zueoyesj 460 12 of of IN cord-000248-zueoyesj 460 13 transitions transition NNS cord-000248-zueoyesj 460 14 of of IN cord-000248-zueoyesj 460 15 Normalized Normalized NNP cord-000248-zueoyesj 460 16 Shannon Shannon NNP cord-000248-zueoyesj 460 17 Entropy Entropy NNP cord-000248-zueoyesj 460 18 and and CC cord-000248-zueoyesj 460 19 Statistical Statistical NNP cord-000248-zueoyesj 460 20 Complexity Complexity NNP cord-000248-zueoyesj 460 21 was be VBD cord-000248-zueoyesj 460 22 contributed contribute VBN cord-000248-zueoyesj 460 23 by by IN cord-000248-zueoyesj 460 24 True True NNP cord-000248-zueoyesj 460 25 et et NNP cord-000248-zueoyesj 460 26 al al NNP cord-000248-zueoyesj 460 27 . . . cord-000248-zueoyesj 461 1 [ [ -LRB- cord-000248-zueoyesj 461 2 332 332 CD cord-000248-zueoyesj 461 3 ] ] -RRB- cord-000248-zueoyesj 461 4 in in IN cord-000248-zueoyesj 461 5 2006 2006 CD cord-000248-zueoyesj 461 6 . . . cord-000248-zueoyesj 462 1 The the DT cord-000248-zueoyesj 462 2 original original JJ cord-000248-zueoyesj 462 3 goal goal NN cord-000248-zueoyesj 462 4 of of IN cord-000248-zueoyesj 462 5 True True NNP cord-000248-zueoyesj 462 6 et et NNP cord-000248-zueoyesj 462 7 al al NNP cord-000248-zueoyesj 462 8 . . NNP cord-000248-zueoyesj 462 9 was be VBD cord-000248-zueoyesj 462 10 to to TO cord-000248-zueoyesj 462 11 identify identify VB cord-000248-zueoyesj 462 12 a a DT cord-000248-zueoyesj 462 13 molecular molecular JJ cord-000248-zueoyesj 462 14 correlate correlate NN cord-000248-zueoyesj 462 15 for for IN cord-000248-zueoyesj 462 16 Gleason Gleason NNP cord-000248-zueoyesj 462 17 patterns pattern NNS cord-000248-zueoyesj 462 18 3 3 CD cord-000248-zueoyesj 462 19 and and CC cord-000248-zueoyesj 462 20 , , , cord-000248-zueoyesj 462 21 if if IN cord-000248-zueoyesj 462 22 possible possible JJ cord-000248-zueoyesj 462 23 , , , cord-000248-zueoyesj 462 24 the the DT cord-000248-zueoyesj 462 25 clinically clinically RB cord-000248-zueoyesj 462 26 most most RBS cord-000248-zueoyesj 462 27 worrisome worrisome JJ cord-000248-zueoyesj 462 28 patterns pattern NNS cord-000248-zueoyesj 462 29 4 4 CD cord-000248-zueoyesj 462 30 and and CC cord-000248-zueoyesj 462 31 5 5 CD cord-000248-zueoyesj 462 32 . . . cord-000248-zueoyesj 463 1 They -PRON- PRP cord-000248-zueoyesj 463 2 partially partially RB cord-000248-zueoyesj 463 3 succeeded succeed VBN cord-000248-zueoyesj 463 4 by by IN cord-000248-zueoyesj 463 5 linking link VBG cord-000248-zueoyesj 463 6 the the DT cord-000248-zueoyesj 463 7 expression expression NN cord-000248-zueoyesj 463 8 of of IN cord-000248-zueoyesj 463 9 only only RB cord-000248-zueoyesj 463 10 86 86 CD cord-000248-zueoyesj 463 11 genes gene NNS cord-000248-zueoyesj 463 12 with with IN cord-000248-zueoyesj 463 13 Gleason Gleason NNP cord-000248-zueoyesj 463 14 pattern pattern NN cord-000248-zueoyesj 463 15 3 3 CD cord-000248-zueoyesj 463 16 [ [ -LRB- cord-000248-zueoyesj 463 17 332 332 CD cord-000248-zueoyesj 463 18 ] ] -RRB- cord-000248-zueoyesj 463 19 using use VBG cord-000248-zueoyesj 463 20 a a DT cord-000248-zueoyesj 463 21 standard standard JJ cord-000248-zueoyesj 463 22 statistical statistical JJ cord-000248-zueoyesj 463 23 analysis analysis NN cord-000248-zueoyesj 463 24 . . . cord-000248-zueoyesj 464 1 In in IN cord-000248-zueoyesj 464 2 this this DT cord-000248-zueoyesj 464 3 study study NN cord-000248-zueoyesj 464 4 , , , cord-000248-zueoyesj 464 5 we -PRON- PRP cord-000248-zueoyesj 464 6 eliminated eliminate VBD cord-000248-zueoyesj 464 7 sample sample NN cord-000248-zueoyesj 464 8 02 02 CD cord-000248-zueoyesj 464 9 - - SYM cord-000248-zueoyesj 464 10 209C 209c CD cord-000248-zueoyesj 464 11 since since IN cord-000248-zueoyesj 464 12 data datum NNS cord-000248-zueoyesj 464 13 was be VBD cord-000248-zueoyesj 464 14 acquired acquire VBN cord-000248-zueoyesj 464 15 using use VBG cord-000248-zueoyesj 464 16 a a DT cord-000248-zueoyesj 464 17 different different JJ cord-000248-zueoyesj 464 18 platform platform NN cord-000248-zueoyesj 464 19 and and CC cord-000248-zueoyesj 464 20 would would MD cord-000248-zueoyesj 464 21 not not RB cord-000248-zueoyesj 464 22 be be VB cord-000248-zueoyesj 464 23 useful useful JJ cord-000248-zueoyesj 464 24 for for IN cord-000248-zueoyesj 464 25 our -PRON- PRP$ cord-000248-zueoyesj 464 26 analysis analysis NN cord-000248-zueoyesj 464 27 . . . cord-000248-zueoyesj 465 1 The the DT cord-000248-zueoyesj 465 2 remaining remain VBG cord-000248-zueoyesj 465 3 thirty thirty CD cord-000248-zueoyesj 465 4 one one CD cord-000248-zueoyesj 465 5 ( ( -LRB- cord-000248-zueoyesj 465 6 31 31 CD cord-000248-zueoyesj 465 7 ) ) -RRB- cord-000248-zueoyesj 465 8 samples sample NNS cord-000248-zueoyesj 465 9 were be VBD cord-000248-zueoyesj 465 10 assayed assay VBN cord-000248-zueoyesj 465 11 with with IN cord-000248-zueoyesj 465 12 the the DT cord-000248-zueoyesj 465 13 GPL3834 GPL3834 NNPS cord-000248-zueoyesj 465 14 ( ( -LRB- cord-000248-zueoyesj 465 15 FHCRC FHCRC NNP cord-000248-zueoyesj 465 16 Human Human NNP cord-000248-zueoyesj 465 17 Prostate Prostate NNP cord-000248-zueoyesj 465 18 PEDB PEDB NNP cord-000248-zueoyesj 465 19 cDNA cdna NN cord-000248-zueoyesj 465 20 Array Array NNP cord-000248-zueoyesj 465 21 v4 v4 NNP cord-000248-zueoyesj 465 22 ) ) -RRB- cord-000248-zueoyesj 465 23 platform platform NN cord-000248-zueoyesj 465 24 using use VBG cord-000248-zueoyesj 465 25 15,488 15,488 CD cord-000248-zueoyesj 465 26 probes probe NNS cord-000248-zueoyesj 465 27 . . . cord-000248-zueoyesj 466 1 We -PRON- PRP cord-000248-zueoyesj 466 2 also also RB cord-000248-zueoyesj 466 3 eliminated eliminate VBD cord-000248-zueoyesj 466 4 all all PDT cord-000248-zueoyesj 466 5 the the DT cord-000248-zueoyesj 466 6 probes probe NNS cord-000248-zueoyesj 466 7 with with IN cord-000248-zueoyesj 466 8 missing miss VBG cord-000248-zueoyesj 466 9 values value NNS cord-000248-zueoyesj 466 10 , , , cord-000248-zueoyesj 466 11 remaining remain VBG cord-000248-zueoyesj 466 12 13,188 13,188 CD cord-000248-zueoyesj 466 13 probes probe NNS cord-000248-zueoyesj 466 14 . . . cord-000248-zueoyesj 467 1 We -PRON- PRP cord-000248-zueoyesj 467 2 have have VBP cord-000248-zueoyesj 467 3 first first RB cord-000248-zueoyesj 467 4 plotted plot VBN cord-000248-zueoyesj 467 5 the the DT cord-000248-zueoyesj 467 6 samples sample NNS cord-000248-zueoyesj 467 7 on on IN cord-000248-zueoyesj 467 8 the the DT cord-000248-zueoyesj 467 9 ( ( -LRB- cord-000248-zueoyesj 467 10 Normalized normalize VBN cord-000248-zueoyesj 467 11 Shannon Shannon NNP cord-000248-zueoyesj 467 12 Entropy Entropy NNP cord-000248-zueoyesj 467 13 , , , cord-000248-zueoyesj 467 14 MPR MPR NNP cord-000248-zueoyesj 467 15 - - HYPH cord-000248-zueoyesj 467 16 Statistical Statistical NNP cord-000248-zueoyesj 467 17 Complexity Complexity NNP cord-000248-zueoyesj 467 18 ) ) -RRB- cord-000248-zueoyesj 467 19 plane plane NN cord-000248-zueoyesj 467 20 ( ( -LRB- cord-000248-zueoyesj 467 21 Figure figure NN cord-000248-zueoyesj 467 22 12 12 CD cord-000248-zueoyesj 467 23 ) ) -RRB- cord-000248-zueoyesj 467 24 . . . cord-000248-zueoyesj 468 1 It -PRON- PRP cord-000248-zueoyesj 468 2 was be VBD cord-000248-zueoyesj 468 3 interesting interesting JJ cord-000248-zueoyesj 468 4 to to TO cord-000248-zueoyesj 468 5 observe observe VB cord-000248-zueoyesj 468 6 that that IN cord-000248-zueoyesj 468 7 there there EX cord-000248-zueoyesj 468 8 exists exist VBZ cord-000248-zueoyesj 468 9 a a DT cord-000248-zueoyesj 468 10 high high JJ cord-000248-zueoyesj 468 11 correlation correlation NN cord-000248-zueoyesj 468 12 between between IN cord-000248-zueoyesj 468 13 the the DT cord-000248-zueoyesj 468 14 two two CD cord-000248-zueoyesj 468 15 measures measure NNS cord-000248-zueoyesj 468 16 . . . cord-000248-zueoyesj 469 1 Samples sample NNS cord-000248-zueoyesj 469 2 that that WDT cord-000248-zueoyesj 469 3 are be VBP cord-000248-zueoyesj 469 4 entirely entirely RB cord-000248-zueoyesj 469 5 composed compose VBN cord-000248-zueoyesj 469 6 of of IN cord-000248-zueoyesj 469 7 Gleason Gleason NNP cord-000248-zueoyesj 469 8 pattern pattern NN cord-000248-zueoyesj 469 9 3 3 CD cord-000248-zueoyesj 469 10 tend tend VBP cord-000248-zueoyesj 469 11 to to TO cord-000248-zueoyesj 469 12 have have VB cord-000248-zueoyesj 469 13 a a DT cord-000248-zueoyesj 469 14 greater great JJR cord-000248-zueoyesj 469 15 value value NN cord-000248-zueoyesj 469 16 of of IN cord-000248-zueoyesj 469 17 Normalized Normalized NNP cord-000248-zueoyesj 469 18 Shannon Shannon NNP cord-000248-zueoyesj 469 19 Entropy Entropy NNP cord-000248-zueoyesj 469 20 than than IN cord-000248-zueoyesj 469 21 0.985 0.985 CD cord-000248-zueoyesj 469 22 . . . cord-000248-zueoyesj 470 1 We -PRON- PRP cord-000248-zueoyesj 470 2 can can MD cord-000248-zueoyesj 470 3 also also RB cord-000248-zueoyesj 470 4 identify identify VB cord-000248-zueoyesj 470 5 a a DT cord-000248-zueoyesj 470 6 cluster cluster NN cord-000248-zueoyesj 470 7 of of IN cord-000248-zueoyesj 470 8 samples sample NNS cord-000248-zueoyesj 470 9 that that WDT cord-000248-zueoyesj 470 10 present present VBP cord-000248-zueoyesj 470 11 Gleason Gleason NNP cord-000248-zueoyesj 470 12 patterns pattern NNS cord-000248-zueoyesj 470 13 which which WDT cord-000248-zueoyesj 470 14 are be VBP cord-000248-zueoyesj 470 15 either either DT cord-000248-zueoyesj 470 16 4 4 CD cord-000248-zueoyesj 470 17 or or CC cord-000248-zueoyesj 470 18 5 5 CD cord-000248-zueoyesj 470 19 . . . cord-000248-zueoyesj 471 1 Note note VB cord-000248-zueoyesj 471 2 that that IN cord-000248-zueoyesj 471 3 there there EX cord-000248-zueoyesj 471 4 seems seem VBZ cord-000248-zueoyesj 471 5 to to TO cord-000248-zueoyesj 471 6 be be VB cord-000248-zueoyesj 471 7 two two CD cord-000248-zueoyesj 471 8 outliers outlier NNS cord-000248-zueoyesj 471 9 ( ( -LRB- cord-000248-zueoyesj 471 10 02_003E 02_003e CD cord-000248-zueoyesj 471 11 and and CC cord-000248-zueoyesj 471 12 03_063 03_063 LS cord-000248-zueoyesj 471 13 ) ) -RRB- cord-000248-zueoyesj 471 14 to to IN cord-000248-zueoyesj 471 15 the the DT cord-000248-zueoyesj 471 16 generic generic JJ cord-000248-zueoyesj 471 17 trend trend NN cord-000248-zueoyesj 471 18 of of IN cord-000248-zueoyesj 471 19 the the DT cord-000248-zueoyesj 471 20 other other JJ cord-000248-zueoyesj 471 21 29 29 CD cord-000248-zueoyesj 471 22 samples sample NNS cord-000248-zueoyesj 471 23 . . . cord-000248-zueoyesj 472 1 The the DT cord-000248-zueoyesj 472 2 two two CD cord-000248-zueoyesj 472 3 outliers outlier NNS cord-000248-zueoyesj 472 4 are be VBP cord-000248-zueoyesj 472 5 samples sample NNS cord-000248-zueoyesj 472 6 that that WDT cord-000248-zueoyesj 472 7 correspond correspond VBP cord-000248-zueoyesj 472 8 to to IN cord-000248-zueoyesj 472 9 samples sample NNS cord-000248-zueoyesj 472 10 labelled label VBN cord-000248-zueoyesj 472 11 as as IN cord-000248-zueoyesj 472 12 having have VBG cord-000248-zueoyesj 472 13 Gleason Gleason NNP cord-000248-zueoyesj 472 14 3 3 CD cord-000248-zueoyesj 472 15 patterns pattern NNS cord-000248-zueoyesj 472 16 and and CC cord-000248-zueoyesj 472 17 both both DT cord-000248-zueoyesj 472 18 have have VBP cord-000248-zueoyesj 472 19 unusually unusually RB cord-000248-zueoyesj 472 20 low low JJ cord-000248-zueoyesj 472 21 values value NNS cord-000248-zueoyesj 472 22 of of IN cord-000248-zueoyesj 472 23 Normalized Normalized NNP cord-000248-zueoyesj 472 24 Shannon Shannon NNP cord-000248-zueoyesj 472 25 Entropy Entropy NNP cord-000248-zueoyesj 472 26 that that WDT cord-000248-zueoyesj 472 27 are be VBP cord-000248-zueoyesj 472 28 well well RB cord-000248-zueoyesj 472 29 below below IN cord-000248-zueoyesj 472 30 the the DT cord-000248-zueoyesj 472 31 values value NNS cord-000248-zueoyesj 472 32 of of IN cord-000248-zueoyesj 472 33 the the DT cord-000248-zueoyesj 472 34 rest rest NN cord-000248-zueoyesj 472 35 of of IN cord-000248-zueoyesj 472 36 the the DT cord-000248-zueoyesj 472 37 group group NN cord-000248-zueoyesj 472 38 . . . cord-000248-zueoyesj 473 1 This this DT cord-000248-zueoyesj 473 2 raised raise VBD cord-000248-zueoyesj 473 3 a a DT cord-000248-zueoyesj 473 4 suspicion suspicion NN cord-000248-zueoyesj 473 5 about about IN cord-000248-zueoyesj 473 6 the the DT cord-000248-zueoyesj 473 7 true true JJ cord-000248-zueoyesj 473 8 nature nature NN cord-000248-zueoyesj 473 9 of of IN cord-000248-zueoyesj 473 10 this this DT cord-000248-zueoyesj 473 11 phenomenon phenomenon NN cord-000248-zueoyesj 473 12 . . . cord-000248-zueoyesj 474 1 If if IN cord-000248-zueoyesj 474 2 the the DT cord-000248-zueoyesj 474 3 labelling labelling NN cord-000248-zueoyesj 474 4 is be VBZ cord-000248-zueoyesj 474 5 correct correct JJ cord-000248-zueoyesj 474 6 , , , cord-000248-zueoyesj 474 7 this this DT cord-000248-zueoyesj 474 8 may may MD cord-000248-zueoyesj 474 9 indicate indicate VB cord-000248-zueoyesj 474 10 a a DT cord-000248-zueoyesj 474 11 subsampled subsampled JJ cord-000248-zueoyesj 474 12 group group NN cord-000248-zueoyesj 474 13 of of IN cord-000248-zueoyesj 474 14 prostate prostate NN cord-000248-zueoyesj 474 15 cancer cancer NN cord-000248-zueoyesj 474 16 that that WDT cord-000248-zueoyesj 474 17 has have VBZ cord-000248-zueoyesj 474 18 Gleason Gleason NNP cord-000248-zueoyesj 474 19 3 3 CD cord-000248-zueoyesj 474 20 pattern pattern NN cord-000248-zueoyesj 474 21 characteristics characteristic NNS cord-000248-zueoyesj 474 22 but but CC cord-000248-zueoyesj 474 23 very very RB cord-000248-zueoyesj 474 24 low low JJ cord-000248-zueoyesj 474 25 entropy entropy NN cord-000248-zueoyesj 474 26 . . . cord-000248-zueoyesj 475 1 Alternatively alternatively RB cord-000248-zueoyesj 475 2 , , , cord-000248-zueoyesj 475 3 it -PRON- PRP cord-000248-zueoyesj 475 4 may may MD cord-000248-zueoyesj 475 5 indicate indicate VB cord-000248-zueoyesj 475 6 an an DT cord-000248-zueoyesj 475 7 experimental experimental JJ cord-000248-zueoyesj 475 8 bias bias NN cord-000248-zueoyesj 475 9 for for IN cord-000248-zueoyesj 475 10 reasons reason NNS cord-000248-zueoyesj 475 11 we -PRON- PRP cord-000248-zueoyesj 475 12 can can MD cord-000248-zueoyesj 475 13 not not RB cord-000248-zueoyesj 475 14 explain explain VB cord-000248-zueoyesj 475 15 with with IN cord-000248-zueoyesj 475 16 the the DT cord-000248-zueoyesj 475 17 available available JJ cord-000248-zueoyesj 475 18 clinical clinical JJ cord-000248-zueoyesj 475 19 information information NN cord-000248-zueoyesj 475 20 . . . cord-000248-zueoyesj 476 1 In in IN cord-000248-zueoyesj 476 2 order order NN cord-000248-zueoyesj 476 3 to to TO cord-000248-zueoyesj 476 4 clarify clarify VB cord-000248-zueoyesj 476 5 the the DT cord-000248-zueoyesj 476 6 situation situation NN cord-000248-zueoyesj 476 7 , , , cord-000248-zueoyesj 476 8 and and CC cord-000248-zueoyesj 476 9 see see VB cord-000248-zueoyesj 476 10 if if IN cord-000248-zueoyesj 476 11 we -PRON- PRP cord-000248-zueoyesj 476 12 can can MD cord-000248-zueoyesj 476 13 declare declare VB cord-000248-zueoyesj 476 14 these these DT cord-000248-zueoyesj 476 15 two two CD cord-000248-zueoyesj 476 16 samples sample NNS cord-000248-zueoyesj 476 17 as as IN cord-000248-zueoyesj 476 18 outliers outlier NNS cord-000248-zueoyesj 476 19 of of IN cord-000248-zueoyesj 476 20 the the DT cord-000248-zueoyesj 476 21 other other JJ cord-000248-zueoyesj 476 22 group group NN cord-000248-zueoyesj 476 23 , , , cord-000248-zueoyesj 476 24 we -PRON- PRP cord-000248-zueoyesj 476 25 performed perform VBD cord-000248-zueoyesj 476 26 another another DT cord-000248-zueoyesj 476 27 experiment experiment NN cord-000248-zueoyesj 476 28 . . . cord-000248-zueoyesj 477 1 We -PRON- PRP cord-000248-zueoyesj 477 2 have have VBP cord-000248-zueoyesj 477 3 now now RB cord-000248-zueoyesj 477 4 computed compute VBN cord-000248-zueoyesj 477 5 two two CD cord-000248-zueoyesj 477 6 modified modify VBN cord-000248-zueoyesj 477 7 complexities complexity NNS cord-000248-zueoyesj 477 8 , , , cord-000248-zueoyesj 477 9 which which WDT cord-000248-zueoyesj 477 10 we -PRON- PRP cord-000248-zueoyesj 477 11 will will MD cord-000248-zueoyesj 477 12 call call VB cord-000248-zueoyesj 477 13 M- M- NNP cord-000248-zueoyesj 477 14 Gleason Gleason NNP cord-000248-zueoyesj 477 15 3 3 CD cord-000248-zueoyesj 477 16 and and CC cord-000248-zueoyesj 477 17 M M NNP cord-000248-zueoyesj 477 18 - - HYPH cord-000248-zueoyesj 477 19 Gleason Gleason NNP cord-000248-zueoyesj 477 20 5 5 CD cord-000248-zueoyesj 477 21 ( ( -LRB- cord-000248-zueoyesj 477 22 Figure Figure NNP cord-000248-zueoyesj 477 23 13 13 CD cord-000248-zueoyesj 477 24 ) ) -RRB- cord-000248-zueoyesj 477 25 . . . cord-000248-zueoyesj 478 1 The the DT cord-000248-zueoyesj 478 2 names name NNS cord-000248-zueoyesj 478 3 are be VBP cord-000248-zueoyesj 478 4 probably probably RB cord-000248-zueoyesj 478 5 selfexplanatory selfexplanatory JJ cord-000248-zueoyesj 478 6 , , , cord-000248-zueoyesj 478 7 but but CC cord-000248-zueoyesj 478 8 a a DT cord-000248-zueoyesj 478 9 brief brief JJ cord-000248-zueoyesj 478 10 reminder reminder NN cord-000248-zueoyesj 478 11 follows follow VBZ cord-000248-zueoyesj 478 12 . . . cord-000248-zueoyesj 479 1 To to TO cord-000248-zueoyesj 479 2 calculate calculate VB cord-000248-zueoyesj 479 3 the the DT cord-000248-zueoyesj 479 4 MPR MPR NNP cord-000248-zueoyesj 479 5 - - HYPH cord-000248-zueoyesj 479 6 Complexity Complexity NNP cord-000248-zueoyesj 479 7 , , , cord-000248-zueoyesj 479 8 by by IN cord-000248-zueoyesj 479 9 definition definition NN cord-000248-zueoyesj 479 10 , , , cord-000248-zueoyesj 479 11 we -PRON- PRP cord-000248-zueoyesj 479 12 have have VBP cord-000248-zueoyesj 479 13 used use VBN cord-000248-zueoyesj 479 14 the the DT cord-000248-zueoyesj 479 15 equiprobable equiprobable JJ cord-000248-zueoyesj 479 16 distribution distribution NN cord-000248-zueoyesj 479 17 as as IN cord-000248-zueoyesj 479 18 our -PRON- PRP$ cord-000248-zueoyesj 479 19 probability probability NN cord-000248-zueoyesj 479 20 distribution distribution NN cord-000248-zueoyesj 479 21 of of IN cord-000248-zueoyesj 479 22 reference reference NN cord-000248-zueoyesj 479 23 ( ( -LRB- cord-000248-zueoyesj 479 24 for for IN cord-000248-zueoyesj 479 25 the the DT cord-000248-zueoyesj 479 26 computation computation NN cord-000248-zueoyesj 479 27 of of IN cord-000248-zueoyesj 479 28 the the DT cord-000248-zueoyesj 479 29 Jensen Jensen NNP cord-000248-zueoyesj 479 30 - - HYPH cord-000248-zueoyesj 479 31 Shannon Shannon NNP cord-000248-zueoyesj 479 32 Divergence Divergence NNP cord-000248-zueoyesj 479 33 of of IN cord-000248-zueoyesj 479 34 the the DT cord-000248-zueoyesj 479 35 gene gene NN cord-000248-zueoyesj 479 36 expression expression NN cord-000248-zueoyesj 479 37 profile profile NN cord-000248-zueoyesj 479 38 to to IN cord-000248-zueoyesj 479 39 this this DT cord-000248-zueoyesj 479 40 distribution distribution NN cord-000248-zueoyesj 479 41 ) ) -RRB- cord-000248-zueoyesj 479 42 . . . cord-000248-zueoyesj 480 1 In in IN cord-000248-zueoyesj 480 2 the the DT cord-000248-zueoyesj 480 3 case case NN cord-000248-zueoyesj 480 4 of of IN cord-000248-zueoyesj 480 5 the the DT cord-000248-zueoyesj 480 6 M M NNP cord-000248-zueoyesj 480 7 - - HYPH cord-000248-zueoyesj 480 8 Gleason Gleason NNP cord-000248-zueoyesj 480 9 3 3 CD cord-000248-zueoyesj 480 10 , , , cord-000248-zueoyesj 480 11 the the DT cord-000248-zueoyesj 480 12 probability probability NN cord-000248-zueoyesj 480 13 distribution distribution NN cord-000248-zueoyesj 480 14 of of IN cord-000248-zueoyesj 480 15 the the DT cord-000248-zueoyesj 480 16 reference reference NN cord-000248-zueoyesj 480 17 is be VBZ cord-000248-zueoyesj 480 18 obtained obtain VBN cord-000248-zueoyesj 480 19 averaging average VBG cord-000248-zueoyesj 480 20 all all PDT cord-000248-zueoyesj 480 21 the the DT cord-000248-zueoyesj 480 22 probability probability NN cord-000248-zueoyesj 480 23 distributions distribution NNS cord-000248-zueoyesj 480 24 of of IN cord-000248-zueoyesj 480 25 the the DT cord-000248-zueoyesj 480 26 samples sample NNS cord-000248-zueoyesj 480 27 that that WDT cord-000248-zueoyesj 480 28 have have VBP cord-000248-zueoyesj 480 29 been be VBN cord-000248-zueoyesj 480 30 labelled label VBN cord-000248-zueoyesj 480 31 as as IN cord-000248-zueoyesj 480 32 Gleason Gleason NNP cord-000248-zueoyesj 480 33 3 3 CD cord-000248-zueoyesj 480 34 ( ( -LRB- cord-000248-zueoyesj 480 35 analogously analogously RB cord-000248-zueoyesj 480 36 , , , cord-000248-zueoyesj 480 37 we -PRON- PRP cord-000248-zueoyesj 480 38 calculated calculate VBD cord-000248-zueoyesj 480 39 M- M- NNP cord-000248-zueoyesj 480 40 Gleason Gleason NNP cord-000248-zueoyesj 480 41 5 5 CD cord-000248-zueoyesj 480 42 ) ) -RRB- cord-000248-zueoyesj 480 43 . . . cord-000248-zueoyesj 481 1 Samples sample NNS cord-000248-zueoyesj 481 2 that that WDT cord-000248-zueoyesj 481 3 have have VBP cord-000248-zueoyesj 481 4 Gleason Gleason NNP cord-000248-zueoyesj 481 5 pattern pattern NN cord-000248-zueoyesj 481 6 3 3 CD cord-000248-zueoyesj 481 7 and and CC cord-000248-zueoyesj 481 8 5 5 CD cord-000248-zueoyesj 481 9 appear appear VBP cord-000248-zueoyesj 481 10 as as IN cord-000248-zueoyesj 481 11 separate separate JJ cord-000248-zueoyesj 481 12 clusters cluster NNS cord-000248-zueoyesj 481 13 in in IN cord-000248-zueoyesj 481 14 the the DT cord-000248-zueoyesj 481 15 ( ( -LRB- cord-000248-zueoyesj 481 16 M M NNP cord-000248-zueoyesj 481 17 - - HYPH cord-000248-zueoyesj 481 18 Gleason Gleason NNP cord-000248-zueoyesj 481 19 3 3 CD cord-000248-zueoyesj 481 20 , , , cord-000248-zueoyesj 481 21 M M NNP cord-000248-zueoyesj 481 22 - - HYPH cord-000248-zueoyesj 481 23 Gleason Gleason NNP cord-000248-zueoyesj 481 24 5 5 CD cord-000248-zueoyesj 481 25 ) ) -RRB- cord-000248-zueoyesj 481 26 plane plane NN cord-000248-zueoyesj 481 27 with with IN cord-000248-zueoyesj 481 28 the the DT cord-000248-zueoyesj 481 29 two two CD cord-000248-zueoyesj 481 30 putative putative JJ cord-000248-zueoyesj 481 31 outliers outlier NNS cord-000248-zueoyesj 481 32 of of IN cord-000248-zueoyesj 481 33 the the DT cord-000248-zueoyesj 481 34 general general JJ cord-000248-zueoyesj 481 35 trend trend NN cord-000248-zueoyesj 481 36 far far RB cord-000248-zueoyesj 481 37 apart apart RB cord-000248-zueoyesj 481 38 ( ( -LRB- cord-000248-zueoyesj 481 39 even even RB cord-000248-zueoyesj 481 40 if if IN cord-000248-zueoyesj 481 41 they -PRON- PRP cord-000248-zueoyesj 481 42 have have VBP cord-000248-zueoyesj 481 43 been be VBN cord-000248-zueoyesj 481 44 used use VBN cord-000248-zueoyesj 481 45 to to TO cord-000248-zueoyesj 481 46 calculate calculate VB cord-000248-zueoyesj 481 47 the the DT cord-000248-zueoyesj 481 48 average average JJ cord-000248-zueoyesj 481 49 probability probability NN cord-000248-zueoyesj 481 50 distribution distribution NN cord-000248-zueoyesj 481 51 function function NN cord-000248-zueoyesj 481 52 of of IN cord-000248-zueoyesj 481 53 the the DT cord-000248-zueoyesj 481 54 Gleason Gleason NNP cord-000248-zueoyesj 481 55 3 3 CD cord-000248-zueoyesj 481 56 pattern pattern NN cord-000248-zueoyesj 481 57 ) ) -RRB- cord-000248-zueoyesj 481 58 . . . cord-000248-zueoyesj 482 1 Even even RB cord-000248-zueoyesj 482 2 samples sample NNS cord-000248-zueoyesj 482 3 with with IN cord-000248-zueoyesj 482 4 Gleason Gleason NNP cord-000248-zueoyesj 482 5 4 4 CD cord-000248-zueoyesj 482 6 pattern pattern NN cord-000248-zueoyesj 482 7 are be VBP cord-000248-zueoyesj 482 8 located locate VBN cord-000248-zueoyesj 482 9 closer close RBR cord-000248-zueoyesj 482 10 to to IN cord-000248-zueoyesj 482 11 samples sample NNS cord-000248-zueoyesj 482 12 of of IN cord-000248-zueoyesj 482 13 Gleason Gleason NNP cord-000248-zueoyesj 482 14 patterns pattern NNS cord-000248-zueoyesj 482 15 3 3 CD cord-000248-zueoyesj 482 16 , , , cord-000248-zueoyesj 482 17 and and CC cord-000248-zueoyesj 482 18 5 5 CD cord-000248-zueoyesj 482 19 , , , cord-000248-zueoyesj 482 20 indicating indicate VBG cord-000248-zueoyesj 482 21 that that IN cord-000248-zueoyesj 482 22 , , , cord-000248-zueoyesj 482 23 perhaps perhaps RB cord-000248-zueoyesj 482 24 , , , cord-000248-zueoyesj 482 25 there there EX cord-000248-zueoyesj 482 26 exists exist VBZ cord-000248-zueoyesj 482 27 a a DT cord-000248-zueoyesj 482 28 subsampled subsampled JJ cord-000248-zueoyesj 482 29 subtype subtype NN cord-000248-zueoyesj 482 30 of of IN cord-000248-zueoyesj 482 31 prostate prostate NN cord-000248-zueoyesj 482 32 cancer cancer NN cord-000248-zueoyesj 482 33 or or CC cord-000248-zueoyesj 482 34 there there EX cord-000248-zueoyesj 482 35 might may MD cord-000248-zueoyesj 482 36 be be VB cord-000248-zueoyesj 482 37 another another DT cord-000248-zueoyesj 482 38 experimental experimental JJ cord-000248-zueoyesj 482 39 bias bias NN cord-000248-zueoyesj 482 40 or or CC cord-000248-zueoyesj 482 41 factor factor NN cord-000248-zueoyesj 482 42 that that IN cord-000248-zueoyesj 482 43 at at IN cord-000248-zueoyesj 482 44 present present NN cord-000248-zueoyesj 482 45 we -PRON- PRP cord-000248-zueoyesj 482 46 can can MD cord-000248-zueoyesj 482 47 not not RB cord-000248-zueoyesj 482 48 resolve resolve VB cord-000248-zueoyesj 482 49 with with IN cord-000248-zueoyesj 482 50 the the DT cord-000248-zueoyesj 482 51 information information NN cord-000248-zueoyesj 482 52 we -PRON- PRP cord-000248-zueoyesj 482 53 have have VBP cord-000248-zueoyesj 482 54 for for IN cord-000248-zueoyesj 482 55 these these DT cord-000248-zueoyesj 482 56 samples sample NNS cord-000248-zueoyesj 482 57 . . . cord-000248-zueoyesj 483 1 Consequently consequently RB cord-000248-zueoyesj 483 2 , , , cord-000248-zueoyesj 483 3 we -PRON- PRP cord-000248-zueoyesj 483 4 have have VBP cord-000248-zueoyesj 483 5 decided decide VBN cord-000248-zueoyesj 483 6 to to TO cord-000248-zueoyesj 483 7 eliminate eliminate VB cord-000248-zueoyesj 483 8 both both DT cord-000248-zueoyesj 483 9 samples sample NNS cord-000248-zueoyesj 483 10 ( ( -LRB- cord-000248-zueoyesj 483 11 02 02 CD cord-000248-zueoyesj 483 12 - - SYM cord-000248-zueoyesj 483 13 003E 003e CD cord-000248-zueoyesj 483 14 and and CC cord-000248-zueoyesj 483 15 PNA_03 PNA_03 NNP cord-000248-zueoyesj 483 16 - - HYPH cord-000248-zueoyesj 483 17 063A 063a CD cord-000248-zueoyesj 483 18 ) ) -RRB- cord-000248-zueoyesj 483 19 from from IN cord-000248-zueoyesj 483 20 further further JJ cord-000248-zueoyesj 483 21 calculations calculation NNS cord-000248-zueoyesj 483 22 . . . cord-000248-zueoyesj 484 1 With with IN cord-000248-zueoyesj 484 2 these these DT cord-000248-zueoyesj 484 3 considerations consideration NNS cord-000248-zueoyesj 484 4 , , , cord-000248-zueoyesj 484 5 we -PRON- PRP cord-000248-zueoyesj 484 6 now now RB cord-000248-zueoyesj 484 7 have have VBP cord-000248-zueoyesj 484 8 a a DT cord-000248-zueoyesj 484 9 dataset dataset NN cord-000248-zueoyesj 484 10 with with IN cord-000248-zueoyesj 484 11 13,188 13,188 CD cord-000248-zueoyesj 484 12 probes probe NNS cord-000248-zueoyesj 484 13 and and CC cord-000248-zueoyesj 484 14 29 29 CD cord-000248-zueoyesj 484 15 samples sample NNS cord-000248-zueoyesj 484 16 as as IN cord-000248-zueoyesj 484 17 our -PRON- PRP$ cord-000248-zueoyesj 484 18 dataset dataset NN cord-000248-zueoyesj 484 19 for for IN cord-000248-zueoyesj 484 20 further further JJ cord-000248-zueoyesj 484 21 analysis analysis NN cord-000248-zueoyesj 484 22 . . . cord-000248-zueoyesj 485 1 Figure figure NN cord-000248-zueoyesj 485 2 14 14 CD cord-000248-zueoyesj 485 3 shows show VBZ cord-000248-zueoyesj 485 4 the the DT cord-000248-zueoyesj 485 5 distribution distribution NN cord-000248-zueoyesj 485 6 of of IN cord-000248-zueoyesj 485 7 the the DT cord-000248-zueoyesj 485 8 samples sample NNS cord-000248-zueoyesj 485 9 using use VBG cord-000248-zueoyesj 485 10 the the DT cord-000248-zueoyesj 485 11 Normalized Normalized NNP cord-000248-zueoyesj 485 12 Shannon Shannon NNP cord-000248-zueoyesj 485 13 Entropy Entropy NNP cord-000248-zueoyesj 485 14 and and CC cord-000248-zueoyesj 485 15 the the DT cord-000248-zueoyesj 485 16 MPR mpr NN cord-000248-zueoyesj 485 17 - - HYPH cord-000248-zueoyesj 485 18 complexity complexity NN cord-000248-zueoyesj 485 19 . . . cord-000248-zueoyesj 486 1 By by IN cord-000248-zueoyesj 486 2 definition definition NN cord-000248-zueoyesj 486 3 , , , cord-000248-zueoyesj 486 4 the the DT cord-000248-zueoyesj 486 5 positions position NNS cord-000248-zueoyesj 486 6 of of IN cord-000248-zueoyesj 486 7 the the DT cord-000248-zueoyesj 486 8 29 29 CD cord-000248-zueoyesj 486 9 samples sample NNS cord-000248-zueoyesj 486 10 in in IN cord-000248-zueoyesj 486 11 the the DT cord-000248-zueoyesj 486 12 plane plane NN cord-000248-zueoyesj 486 13 do do VBP cord-000248-zueoyesj 486 14 not not RB cord-000248-zueoyesj 486 15 change change VB cord-000248-zueoyesj 486 16 ( ( -LRB- cord-000248-zueoyesj 486 17 this this DT cord-000248-zueoyesj 486 18 figure figure NN cord-000248-zueoyesj 486 19 is be VBZ cord-000248-zueoyesj 486 20 basically basically RB cord-000248-zueoyesj 486 21 ' ' '' cord-000248-zueoyesj 486 22 ' ' `` cord-000248-zueoyesj 486 23 zooming zoom VBG cord-000248-zueoyesj 486 24 in in RP cord-000248-zueoyesj 486 25 ' ' '' cord-000248-zueoyesj 486 26 ' ' '' cord-000248-zueoyesj 487 1 one one CD cord-000248-zueoyesj 487 2 region region NN cord-000248-zueoyesj 487 3 of of IN cord-000248-zueoyesj 487 4 Figure figure NN cord-000248-zueoyesj 487 5 12 12 CD cord-000248-zueoyesj 487 6 that that WDT cord-000248-zueoyesj 487 7 contains contain VBZ cord-000248-zueoyesj 487 8 these these DT cord-000248-zueoyesj 487 9 samples sample NNS cord-000248-zueoyesj 487 10 ) ) -RRB- cord-000248-zueoyesj 487 11 . . . cord-000248-zueoyesj 488 1 We -PRON- PRP cord-000248-zueoyesj 488 2 note note VBP cord-000248-zueoyesj 488 3 again again RB cord-000248-zueoyesj 488 4 , , , cord-000248-zueoyesj 488 5 however however RB cord-000248-zueoyesj 488 6 , , , cord-000248-zueoyesj 488 7 that that IN cord-000248-zueoyesj 488 8 the the DT cord-000248-zueoyesj 488 9 29 29 CD cord-000248-zueoyesj 488 10 samples sample NNS cord-000248-zueoyesj 488 11 seem seem VBP cord-000248-zueoyesj 488 12 to to TO cord-000248-zueoyesj 488 13 be be VB cord-000248-zueoyesj 488 14 separating separate VBG cord-000248-zueoyesj 488 15 in in IN cord-000248-zueoyesj 488 16 three three CD cord-000248-zueoyesj 488 17 different different JJ cord-000248-zueoyesj 488 18 clusters cluster NNS cord-000248-zueoyesj 488 19 . . . cord-000248-zueoyesj 489 1 Whether whether IN cord-000248-zueoyesj 489 2 we -PRON- PRP cord-000248-zueoyesj 489 3 can can MD cord-000248-zueoyesj 489 4 argue argue VB cord-000248-zueoyesj 489 5 about about IN cord-000248-zueoyesj 489 6 the the DT cord-000248-zueoyesj 489 7 existence existence NN cord-000248-zueoyesj 489 8 or or CC cord-000248-zueoyesj 489 9 not not RB cord-000248-zueoyesj 489 10 of of IN cord-000248-zueoyesj 489 11 these these DT cord-000248-zueoyesj 489 12 gaps gap NNS cord-000248-zueoyesj 489 13 in in IN cord-000248-zueoyesj 489 14 Normalized Normalized NNP cord-000248-zueoyesj 489 15 Shannon Shannon NNP cord-000248-zueoyesj 489 16 Entropy Entropy NNP cord-000248-zueoyesj 489 17 , , , cord-000248-zueoyesj 489 18 it -PRON- PRP cord-000248-zueoyesj 489 19 is be VBZ cord-000248-zueoyesj 489 20 clear clear JJ cord-000248-zueoyesj 489 21 that that IN cord-000248-zueoyesj 489 22 there there EX cord-000248-zueoyesj 489 23 seems seem VBZ cord-000248-zueoyesj 489 24 to to TO cord-000248-zueoyesj 489 25 be be VB cord-000248-zueoyesj 489 26 a a DT cord-000248-zueoyesj 489 27 progression progression NN cord-000248-zueoyesj 489 28 as as IN cord-000248-zueoyesj 489 29 we -PRON- PRP cord-000248-zueoyesj 489 30 have have VBP cord-000248-zueoyesj 489 31 seen see VBN cord-000248-zueoyesj 489 32 with with IN cord-000248-zueoyesj 489 33 Lapointe Lapointe NNP cord-000248-zueoyesj 489 34 et et FW cord-000248-zueoyesj 489 35 al al NNP cord-000248-zueoyesj 489 36 's 's POS cord-000248-zueoyesj 489 37 dataset dataset NN cord-000248-zueoyesj 489 38 . . . cord-000248-zueoyesj 490 1 There there EX cord-000248-zueoyesj 490 2 is be VBZ cord-000248-zueoyesj 490 3 a a DT cord-000248-zueoyesj 490 4 group group NN cord-000248-zueoyesj 490 5 of of IN cord-000248-zueoyesj 490 6 three three CD cord-000248-zueoyesj 490 7 samples sample NNS cord-000248-zueoyesj 490 8 with with IN cord-000248-zueoyesj 490 9 Gleason Gleason NNP cord-000248-zueoyesj 490 10 pattern pattern NN cord-000248-zueoyesj 490 11 3 3 CD cord-000248-zueoyesj 490 12 that that WDT cord-000248-zueoyesj 490 13 seem seem VBP cord-000248-zueoyesj 490 14 to to TO cord-000248-zueoyesj 490 15 have have VB cord-000248-zueoyesj 490 16 the the DT cord-000248-zueoyesj 490 17 the the DT cord-000248-zueoyesj 490 18 largest large JJS cord-000248-zueoyesj 490 19 Normalized Normalized NNP cord-000248-zueoyesj 490 20 Shannon Shannon NNP cord-000248-zueoyesj 490 21 Entropy Entropy NNP cord-000248-zueoyesj 490 22 values value NNS cord-000248-zueoyesj 490 23 . . . cord-000248-zueoyesj 491 1 There there EX cord-000248-zueoyesj 491 2 is be VBZ cord-000248-zueoyesj 491 3 also also RB cord-000248-zueoyesj 491 4 a a DT cord-000248-zueoyesj 491 5 cluster cluster NN cord-000248-zueoyesj 491 6 that that WDT cord-000248-zueoyesj 491 7 only only RB cord-000248-zueoyesj 491 8 contains contain VBZ cord-000248-zueoyesj 491 9 samples sample NNS cord-000248-zueoyesj 491 10 of of IN cord-000248-zueoyesj 491 11 either either CC cord-000248-zueoyesj 491 12 Gleason Gleason NNP cord-000248-zueoyesj 491 13 pattern pattern NN cord-000248-zueoyesj 491 14 4 4 CD cord-000248-zueoyesj 491 15 and and CC cord-000248-zueoyesj 491 16 5 5 CD cord-000248-zueoyesj 491 17 , , , cord-000248-zueoyesj 491 18 all all DT cord-000248-zueoyesj 491 19 with with IN cord-000248-zueoyesj 491 20 Normalized Normalized NNP cord-000248-zueoyesj 491 21 Shannon Shannon NNP cord-000248-zueoyesj 491 22 Entropy Entropy NNP cord-000248-zueoyesj 491 23 values value VBZ cord-000248-zueoyesj 491 24 smaller small JJR cord-000248-zueoyesj 491 25 than than IN cord-000248-zueoyesj 491 26 0.985 0.985 CD cord-000248-zueoyesj 491 27 . . . cord-000248-zueoyesj 492 1 There there EX cord-000248-zueoyesj 492 2 is be VBZ cord-000248-zueoyesj 492 3 also also RB cord-000248-zueoyesj 492 4 very very RB cord-000248-zueoyesj 492 5 little little JJ cord-000248-zueoyesj 492 6 variation variation NN cord-000248-zueoyesj 492 7 ( ( -LRB- cord-000248-zueoyesj 492 8 see see VB cord-000248-zueoyesj 492 9 Figure Figure NNP cord-000248-zueoyesj 492 10 15 15 CD cord-000248-zueoyesj 492 11 ) ) -RRB- cord-000248-zueoyesj 492 12 of of IN cord-000248-zueoyesj 492 13 the the DT cord-000248-zueoyesj 492 14 positions position NNS cord-000248-zueoyesj 492 15 of of IN cord-000248-zueoyesj 492 16 the the DT cord-000248-zueoyesj 492 17 29 29 CD cord-000248-zueoyesj 492 18 samples sample NNS cord-000248-zueoyesj 492 19 on on IN cord-000248-zueoyesj 492 20 the the DT cord-000248-zueoyesj 492 21 ( ( -LRB- 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492 45 , , , cord-000248-zueoyesj 492 46 even even RB cord-000248-zueoyesj 492 47 in in IN cord-000248-zueoyesj 492 48 the the DT cord-000248-zueoyesj 492 49 presence presence NN cord-000248-zueoyesj 492 50 of of IN cord-000248-zueoyesj 492 51 some some DT cord-000248-zueoyesj 492 52 outliers outlier NNS cord-000248-zueoyesj 492 53 . . . cord-000248-zueoyesj 493 1 After after IN cord-000248-zueoyesj 493 2 observing observe VBG cord-000248-zueoyesj 493 3 that that DT cord-000248-zueoyesj 493 4 Figure figure NN cord-000248-zueoyesj 493 5 14 14 CD cord-000248-zueoyesj 493 6 shows show VBZ cord-000248-zueoyesj 493 7 a a DT cord-000248-zueoyesj 493 8 correlation correlation NN cord-000248-zueoyesj 493 9 of of IN cord-000248-zueoyesj 493 10 Gleason Gleason NNP cord-000248-zueoyesj 493 11 pattern pattern NN cord-000248-zueoyesj 493 12 score score NN cord-000248-zueoyesj 493 13 with with IN cord-000248-zueoyesj 493 14 Normalized Normalized NNP cord-000248-zueoyesj 493 15 Shannon Shannon NNP cord-000248-zueoyesj 493 16 Entropy Entropy NNP cord-000248-zueoyesj 493 17 , , , cord-000248-zueoyesj 493 18 we -PRON- PRP cord-000248-zueoyesj 493 19 asked ask VBD cord-000248-zueoyesj 493 20 ourselves -PRON- PRP cord-000248-zueoyesj 493 21 : : : cord-000248-zueoyesj 493 22 ' ' '' cord-000248-zueoyesj 493 23 which which WDT cord-000248-zueoyesj 493 24 are be VBP cord-000248-zueoyesj 493 25 the the DT cord-000248-zueoyesj 493 26 genes gene NNS cord-000248-zueoyesj 493 27 that that WDT cord-000248-zueoyesj 493 28 most most RBS cord-000248-zueoyesj 493 29 positively positively RB cord-000248-zueoyesj 493 30 and and CC cord-000248-zueoyesj 493 31 negatively negatively RB cord-000248-zueoyesj 493 32 correlate correlate VB cord-000248-zueoyesj 493 33 with with IN cord-000248-zueoyesj 493 34 the the DT cord-000248-zueoyesj 493 35 transitions transition NNS cord-000248-zueoyesj 493 36 of of IN cord-000248-zueoyesj 493 37 Normalized Normalized NNP cord-000248-zueoyesj 493 38 Shannon Shannon NNP cord-000248-zueoyesj 493 39 Entropy Entropy NNP cord-000248-zueoyesj 493 40 ? ? . cord-000248-zueoyesj 493 41 ' ' '' cord-000248-zueoyesj 494 1 We -PRON- PRP cord-000248-zueoyesj 494 2 have have VBP cord-000248-zueoyesj 494 3 plotted plot VBN cord-000248-zueoyesj 494 4 Spearman Spearman NNP cord-000248-zueoyesj 494 5 versus versus IN cord-000248-zueoyesj 494 6 Pearson Pearson NNP cord-000248-zueoyesj 494 7 correlation correlation NN cord-000248-zueoyesj 494 8 values value NNS cord-000248-zueoyesj 494 9 of of IN cord-000248-zueoyesj 494 10 probe probe NN cord-000248-zueoyesj 494 11 expressions expression NNS cord-000248-zueoyesj 494 12 to to TO cord-000248-zueoyesj 494 13 attempt attempt VB cord-000248-zueoyesj 494 14 to to TO cord-000248-zueoyesj 494 15 find find VB cord-000248-zueoyesj 494 16 those those DT cord-000248-zueoyesj 494 17 that that WDT cord-000248-zueoyesj 494 18 best well RBS cord-000248-zueoyesj 494 19 correlate correlate VBP cord-000248-zueoyesj 494 20 , , , cord-000248-zueoyesj 494 21 either either CC cord-000248-zueoyesj 494 22 positively positively RB cord-000248-zueoyesj 494 23 or or CC cord-000248-zueoyesj 494 24 negatively negatively RB cord-000248-zueoyesj 494 25 , , , cord-000248-zueoyesj 494 26 with with IN cord-000248-zueoyesj 494 27 the the DT cord-000248-zueoyesj 494 28 Normalized Normalized NNP cord-000248-zueoyesj 494 29 Shannon Shannon NNP cord-000248-zueoyesj 494 30 Entropy Entropy NNP cord-000248-zueoyesj 494 31 values value NNS cord-000248-zueoyesj 494 32 of of IN cord-000248-zueoyesj 494 33 the the DT cord-000248-zueoyesj 494 34 samples sample NNS cord-000248-zueoyesj 494 35 . . . cord-000248-zueoyesj 495 1 The the DT cord-000248-zueoyesj 495 2 results result NNS cord-000248-zueoyesj 495 3 have have VBP cord-000248-zueoyesj 495 4 revealed reveal VBN cord-000248-zueoyesj 495 5 some some DT cord-000248-zueoyesj 495 6 of of IN cord-000248-zueoyesj 495 7 the the DT cord-000248-zueoyesj 495 8 most most RBS cord-000248-zueoyesj 495 9 relevant relevant JJ cord-000248-zueoyesj 495 10 biomarkers biomarker NNS cord-000248-zueoyesj 495 11 of of IN cord-000248-zueoyesj 495 12 progression progression NN cord-000248-zueoyesj 495 13 , , , cord-000248-zueoyesj 495 14 and and CC cord-000248-zueoyesj 495 15 some some DT cord-000248-zueoyesj 495 16 unexpected unexpected JJ cord-000248-zueoyesj 495 17 newcomers newcomer NNS cord-000248-zueoyesj 495 18 . . . cord-000248-zueoyesj 496 1 Figure figure NN cord-000248-zueoyesj 496 2 16 16 CD cord-000248-zueoyesj 496 3 shows show VBZ cord-000248-zueoyesj 496 4 the the DT cord-000248-zueoyesj 496 5 Pearson Pearson NNP cord-000248-zueoyesj 496 6 and and CC cord-000248-zueoyesj 496 7 Spearman Spearman NNP cord-000248-zueoyesj 496 8 correlations correlation NNS cord-000248-zueoyesj 496 9 of of IN cord-000248-zueoyesj 496 10 all all PDT cord-000248-zueoyesj 496 11 the the DT cord-000248-zueoyesj 496 12 13,188 13,188 CD cord-000248-zueoyesj 496 13 probes probe NNS cord-000248-zueoyesj 496 14 in in IN cord-000248-zueoyesj 496 15 the the DT cord-000248-zueoyesj 496 16 dataset dataset NN cord-000248-zueoyesj 496 17 with with IN cord-000248-zueoyesj 496 18 the the DT cord-000248-zueoyesj 496 19 Normalized Normalized NNP cord-000248-zueoyesj 496 20 Shannon Shannon NNP cord-000248-zueoyesj 496 21 Entropy Entropy NNP cord-000248-zueoyesj 496 22 values value NNS cord-000248-zueoyesj 496 23 of of IN cord-000248-zueoyesj 496 24 the the DT cord-000248-zueoyesj 496 25 samples sample NNS cord-000248-zueoyesj 496 26 . . . cord-000248-zueoyesj 497 1 We -PRON- PRP cord-000248-zueoyesj 497 2 have have VBP cord-000248-zueoyesj 497 3 highlighted highlight VBN cord-000248-zueoyesj 497 4 some some DT cord-000248-zueoyesj 497 5 particular particular JJ cord-000248-zueoyesj 497 6 genes gene NNS cord-000248-zueoyesj 497 7 that that WDT cord-000248-zueoyesj 497 8 are be VBP cord-000248-zueoyesj 497 9 discussed discuss VBN cord-000248-zueoyesj 497 10 below below RB cord-000248-zueoyesj 497 11 . . . cord-000248-zueoyesj 498 1 CDKN2C CDKN2C NNP cord-000248-zueoyesj 499 1 ( ( -LRB- cord-000248-zueoyesj 499 2 cyclin cyclin NN cord-000248-zueoyesj 499 3 - - HYPH cord-000248-zueoyesj 499 4 dependent dependent JJ cord-000248-zueoyesj 499 5 kinase kinase NN cord-000248-zueoyesj 499 6 inhibitor inhibitor NN cord-000248-zueoyesj 499 7 2C 2C NNP cord-000248-zueoyesj 499 8 ( ( -LRB- cord-000248-zueoyesj 499 9 p18 p18 NN cord-000248-zueoyesj 499 10 , , , cord-000248-zueoyesj 499 11 inhibits inhibit VBZ cord-000248-zueoyesj 499 12 CDK4 CDK4 NNP cord-000248-zueoyesj 499 13 ) ) -RRB- cord-000248-zueoyesj 499 14 . . . cord-000248-zueoyesj 500 1 When when WRB cord-000248-zueoyesj 500 2 we -PRON- PRP cord-000248-zueoyesj 500 3 compute compute VBP cord-000248-zueoyesj 500 4 the the DT cord-000248-zueoyesj 500 5 correlations correlation NNS cord-000248-zueoyesj 500 6 of of IN cord-000248-zueoyesj 500 7 the the DT cord-000248-zueoyesj 500 8 probes probe NNS cord-000248-zueoyesj 500 9 expressions expression NNS cord-000248-zueoyesj 500 10 with with IN cord-000248-zueoyesj 500 11 the the DT cord-000248-zueoyesj 500 12 Normalized Normalized NNP cord-000248-zueoyesj 500 13 Shannon Shannon NNP cord-000248-zueoyesj 500 14 Entropy Entropy NNP cord-000248-zueoyesj 500 15 values value NNS cord-000248-zueoyesj 500 16 of of IN cord-000248-zueoyesj 500 17 the the DT cord-000248-zueoyesj 500 18 samples sample NNS cord-000248-zueoyesj 500 19 , , , cord-000248-zueoyesj 500 20 the the DT cord-000248-zueoyesj 500 21 gene gene NN cord-000248-zueoyesj 500 22 that that WDT cord-000248-zueoyesj 500 23 has have VBZ cord-000248-zueoyesj 500 24 the the DT cord-000248-zueoyesj 500 25 most most RBS cord-000248-zueoyesj 500 26 negative negative JJ cord-000248-zueoyesj 500 27 correlations correlation NNS cord-000248-zueoyesj 500 28 is be VBZ cord-000248-zueoyesj 500 29 CDKN2C cdkn2c JJ cord-000248-zueoyesj 500 30 ( ( -LRB- cord-000248-zueoyesj 500 31 cyclin cyclin NN cord-000248-zueoyesj 500 32 - - HYPH cord-000248-zueoyesj 500 33 dependent dependent JJ cord-000248-zueoyesj 500 34 kinase kinase NN cord-000248-zueoyesj 500 35 inhibitor inhibitor NN cord-000248-zueoyesj 500 36 2C 2C NNP cord-000248-zueoyesj 500 37 -p18 -p18 NNP cord-000248-zueoyesj 500 38 , , , cord-000248-zueoyesj 500 39 inhibits inhibit VBZ cord-000248-zueoyesj 500 40 CDK4 CDK4 NNP cord-000248-zueoyesj 500 41 -NM_078626 -NM_078626 NNS cord-000248-zueoyesj 500 42 ) ) -RRB- cord-000248-zueoyesj 500 43 , , , cord-000248-zueoyesj 500 44 which which WDT cord-000248-zueoyesj 500 45 has have VBZ cord-000248-zueoyesj 500 46 been be VBN cord-000248-zueoyesj 500 47 previously previously RB cord-000248-zueoyesj 500 48 associated associate VBN cord-000248-zueoyesj 500 49 with with IN cord-000248-zueoyesj 500 50 the the DT cord-000248-zueoyesj 500 51 transition transition NN cord-000248-zueoyesj 500 52 from from IN cord-000248-zueoyesj 500 53 prostatic prostatic JJ cord-000248-zueoyesj 500 54 intraepithelial intraepithelial JJ cord-000248-zueoyesj 500 55 neoplasia neoplasia NN cord-000248-zueoyesj 500 56 ( ( -LRB- cord-000248-zueoyesj 500 57 PIN pin NN cord-000248-zueoyesj 500 58 ) ) -RRB- cord-000248-zueoyesj 500 59 to to IN cord-000248-zueoyesj 500 60 prostate prostate NN cord-000248-zueoyesj 500 61 cancer cancer NN cord-000248-zueoyesj 501 1 [ [ -LRB- cord-000248-zueoyesj 501 2 68 68 CD cord-000248-zueoyesj 501 3 ] ] -RRB- cord-000248-zueoyesj 501 4 Figure figure NN cord-000248-zueoyesj 501 5 12 12 CD cord-000248-zueoyesj 501 6 . . . cord-000248-zueoyesj 502 1 We -PRON- PRP cord-000248-zueoyesj 502 2 plot plot VBP cord-000248-zueoyesj 502 3 the the DT cord-000248-zueoyesj 502 4 values value NNS cord-000248-zueoyesj 502 5 of of IN cord-000248-zueoyesj 502 6 two two CD cord-000248-zueoyesj 502 7 modified modify VBN cord-000248-zueoyesj 502 8 statistical statistical JJ cord-000248-zueoyesj 502 9 complexities complexity NNS cord-000248-zueoyesj 502 10 , , , cord-000248-zueoyesj 502 11 which which WDT cord-000248-zueoyesj 502 12 we -PRON- PRP cord-000248-zueoyesj 502 13 will will MD cord-000248-zueoyesj 502 14 call call VB cord-000248-zueoyesj 502 15 M M NNP cord-000248-zueoyesj 502 16 - - HYPH cord-000248-zueoyesj 502 17 Gleason Gleason NNP cord-000248-zueoyesj 502 18 3 3 CD cord-000248-zueoyesj 502 19 and and CC cord-000248-zueoyesj 502 20 M- M- NNP cord-000248-zueoyesj 502 21 Gleason Gleason NNP cord-000248-zueoyesj 502 22 5 5 CD cord-000248-zueoyesj 502 23 . . . cord-000248-zueoyesj 503 1 Instead instead RB cord-000248-zueoyesj 503 2 of of IN cord-000248-zueoyesj 503 3 using use VBG cord-000248-zueoyesj 503 4 the the DT cord-000248-zueoyesj 503 5 equiprobable equiprobable JJ cord-000248-zueoyesj 503 6 distribution distribution NN cord-000248-zueoyesj 503 7 as as IN cord-000248-zueoyesj 503 8 our -PRON- PRP$ cord-000248-zueoyesj 503 9 probability probability NN cord-000248-zueoyesj 503 10 distribution distribution NN cord-000248-zueoyesj 503 11 of of IN cord-000248-zueoyesj 503 12 reference reference NN cord-000248-zueoyesj 503 13 ( ( -LRB- cord-000248-zueoyesj 503 14 for for IN cord-000248-zueoyesj 503 15 the the DT cord-000248-zueoyesj 503 16 computation computation NN cord-000248-zueoyesj 503 17 of of IN cord-000248-zueoyesj 503 18 the the DT cord-000248-zueoyesj 503 19 Jensen Jensen NNP cord-000248-zueoyesj 503 20 - - HYPH cord-000248-zueoyesj 503 21 Shannon Shannon NNP cord-000248-zueoyesj 503 22 Divergence Divergence NNP cord-000248-zueoyesj 503 23 of of IN cord-000248-zueoyesj 503 24 the the DT cord-000248-zueoyesj 503 25 gene gene NN cord-000248-zueoyesj 503 26 expression expression NN cord-000248-zueoyesj 503 27 profile profile NN cord-000248-zueoyesj 503 28 to to IN cord-000248-zueoyesj 503 29 this this DT cord-000248-zueoyesj 503 30 distribution distribution NN cord-000248-zueoyesj 503 31 ) ) -RRB- cord-000248-zueoyesj 503 32 , , , cord-000248-zueoyesj 503 33 as as IN cord-000248-zueoyesj 503 34 required require VBN cord-000248-zueoyesj 503 35 for for IN cord-000248-zueoyesj 503 36 the the DT cord-000248-zueoyesj 503 37 MPR MPR NNP cord-000248-zueoyesj 503 38 - - HYPH cord-000248-zueoyesj 503 39 Statistical Statistical NNP cord-000248-zueoyesj 503 40 Complexity Complexity NNP cord-000248-zueoyesj 503 41 calculation calculation NN cord-000248-zueoyesj 503 42 , , , cord-000248-zueoyesj 503 43 we -PRON- PRP cord-000248-zueoyesj 503 44 used use VBD cord-000248-zueoyesj 503 45 a a DT cord-000248-zueoyesj 503 46 different different JJ cord-000248-zueoyesj 503 47 one one CD cord-000248-zueoyesj 503 48 . . . cord-000248-zueoyesj 504 1 For for IN cord-000248-zueoyesj 504 2 the the DT cord-000248-zueoyesj 504 3 M M NNP cord-000248-zueoyesj 504 4 - - HYPH cord-000248-zueoyesj 504 5 Gleason Gleason NNP cord-000248-zueoyesj 504 6 3 3 CD cord-000248-zueoyesj 504 7 , , , cord-000248-zueoyesj 504 8 the the DT cord-000248-zueoyesj 504 9 probability probability NN cord-000248-zueoyesj 504 10 distribution distribution NN cord-000248-zueoyesj 504 11 of of IN cord-000248-zueoyesj 504 12 the the DT cord-000248-zueoyesj 504 13 reference reference NN cord-000248-zueoyesj 504 14 is be VBZ cord-000248-zueoyesj 504 15 obtained obtain VBN cord-000248-zueoyesj 504 16 averaging average VBG cord-000248-zueoyesj 504 17 all all PDT cord-000248-zueoyesj 504 18 the the DT cord-000248-zueoyesj 504 19 probability probability NN cord-000248-zueoyesj 504 20 distributions distribution NNS cord-000248-zueoyesj 504 21 of of IN cord-000248-zueoyesj 504 22 the the DT cord-000248-zueoyesj 504 23 samples sample NNS cord-000248-zueoyesj 504 24 that that WDT cord-000248-zueoyesj 504 25 have have VBP cord-000248-zueoyesj 504 26 been be VBN cord-000248-zueoyesj 504 27 labelled label VBN cord-000248-zueoyesj 504 28 as as IN cord-000248-zueoyesj 504 29 Gleason Gleason NNP cord-000248-zueoyesj 504 30 3 3 CD cord-000248-zueoyesj 504 31 ( ( -LRB- cord-000248-zueoyesj 504 32 analogously analogously RB cord-000248-zueoyesj 504 33 , , , cord-000248-zueoyesj 504 34 we -PRON- PRP cord-000248-zueoyesj 504 35 calculated calculate VBD cord-000248-zueoyesj 504 36 M- M- NNP cord-000248-zueoyesj 504 37 Gleason Gleason NNP cord-000248-zueoyesj 504 38 5 5 CD cord-000248-zueoyesj 504 39 ) ) -RRB- cord-000248-zueoyesj 504 40 . . . cord-000248-zueoyesj 505 1 This this DT cord-000248-zueoyesj 505 2 is be VBZ cord-000248-zueoyesj 505 3 analogous analogous JJ cord-000248-zueoyesj 505 4 to to IN cord-000248-zueoyesj 505 5 our -PRON- PRP$ cord-000248-zueoyesj 505 6 approach approach NN cord-000248-zueoyesj 505 7 in in IN cord-000248-zueoyesj 505 8 melanoma melanoma NN cord-000248-zueoyesj 505 9 ( ( -LRB- cord-000248-zueoyesj 505 10 Figure figure NN cord-000248-zueoyesj 505 11 5 5 CD cord-000248-zueoyesj 505 12 ) ) -RRB- cord-000248-zueoyesj 505 13 in in IN cord-000248-zueoyesj 505 14 which which WDT cord-000248-zueoyesj 505 15 we -PRON- PRP cord-000248-zueoyesj 505 16 used use VBD cord-000248-zueoyesj 505 17 normal normal JJ cord-000248-zueoyesj 505 18 and and CC cord-000248-zueoyesj 505 19 metastatic metastatic JJ cord-000248-zueoyesj 505 20 samples sample NNS cord-000248-zueoyesj 505 21 as as IN cord-000248-zueoyesj 505 22 reference reference NN cord-000248-zueoyesj 505 23 sets set NNS cord-000248-zueoyesj 505 24 for for IN cord-000248-zueoyesj 505 25 a a DT cord-000248-zueoyesj 505 26 modified modify VBN cord-000248-zueoyesj 505 27 statistical statistical JJ cord-000248-zueoyesj 505 28 complexity complexity NN cord-000248-zueoyesj 505 29 . . . cord-000248-zueoyesj 506 1 We -PRON- PRP cord-000248-zueoyesj 506 2 observe observe VBP cord-000248-zueoyesj 506 3 that that IN cord-000248-zueoyesj 506 4 , , , cord-000248-zueoyesj 506 5 even even RB cord-000248-zueoyesj 506 6 in in IN cord-000248-zueoyesj 506 7 this this DT cord-000248-zueoyesj 506 8 case case NN cord-000248-zueoyesj 506 9 , , , cord-000248-zueoyesj 506 10 02_003E 02_003e CD cord-000248-zueoyesj 506 11 and and CC cord-000248-zueoyesj 506 12 03_063 03_063 LS cord-000248-zueoyesj 506 13 continue continue VB cord-000248-zueoyesj 506 14 to to TO cord-000248-zueoyesj 506 15 appear appear VB cord-000248-zueoyesj 506 16 as as IN cord-000248-zueoyesj 506 17 outliers outlier NNS cord-000248-zueoyesj 506 18 . . . cord-000248-zueoyesj 507 1 In in IN cord-000248-zueoyesj 507 2 addition addition NN cord-000248-zueoyesj 507 3 to to IN cord-000248-zueoyesj 507 4 the the DT cord-000248-zueoyesj 507 5 evidence evidence NN cord-000248-zueoyesj 507 6 , , , cord-000248-zueoyesj 507 7 we -PRON- PRP cord-000248-zueoyesj 507 8 have have VBP cord-000248-zueoyesj 507 9 observed observe VBN cord-000248-zueoyesj 507 10 that that IN cord-000248-zueoyesj 507 11 the the DT cord-000248-zueoyesj 507 12 deletion deletion NN cord-000248-zueoyesj 507 13 of of IN cord-000248-zueoyesj 507 14 these these DT cord-000248-zueoyesj 507 15 two two CD cord-000248-zueoyesj 507 16 samples sample NNS cord-000248-zueoyesj 507 17 did do VBD cord-000248-zueoyesj 507 18 not not RB cord-000248-zueoyesj 507 19 significantly significantly RB cord-000248-zueoyesj 507 20 alter alter VB cord-000248-zueoyesj 507 21 the the DT cord-000248-zueoyesj 507 22 identification identification NN cord-000248-zueoyesj 507 23 of of IN cord-000248-zueoyesj 507 24 biomarkers biomarker NNS cord-000248-zueoyesj 507 25 . . . cord-000248-zueoyesj 508 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 509 1 /journal.pone.0012262.g013 /journal.pone.0012262.g013 . cord-000248-zueoyesj 509 2 Samples sample NNS cord-000248-zueoyesj 509 3 02_003E 02_003e CD cord-000248-zueoyesj 509 4 and and CC cord-000248-zueoyesj 509 5 03_063 03_063 LS cord-000248-zueoyesj 509 6 seem seem VB cord-000248-zueoyesj 509 7 to to TO cord-000248-zueoyesj 509 8 be be VB cord-000248-zueoyesj 509 9 outliers outlier NNS cord-000248-zueoyesj 509 10 to to IN cord-000248-zueoyesj 509 11 this this DT cord-000248-zueoyesj 509 12 trend trend NN cord-000248-zueoyesj 509 13 , , , cord-000248-zueoyesj 509 14 and and CC cord-000248-zueoyesj 509 15 in in IN cord-000248-zueoyesj 509 16 the the DT cord-000248-zueoyesj 509 17 case case NN cord-000248-zueoyesj 509 18 of of IN cord-000248-zueoyesj 509 19 03_063 03_063 NFP cord-000248-zueoyesj 509 20 the the DT cord-000248-zueoyesj 509 21 sample sample NN cord-000248-zueoyesj 509 22 is be VBZ cord-000248-zueoyesj 509 23 not not RB cord-000248-zueoyesj 509 24 even even RB cord-000248-zueoyesj 509 25 close close JJ cord-000248-zueoyesj 509 26 to to IN cord-000248-zueoyesj 509 27 a a DT cord-000248-zueoyesj 509 28 hypothetical hypothetical JJ cord-000248-zueoyesj 509 29 linear linear JJ cord-000248-zueoyesj 509 30 fit fit NN cord-000248-zueoyesj 509 31 which which WDT cord-000248-zueoyesj 509 32 seems seem VBZ cord-000248-zueoyesj 509 33 to to TO cord-000248-zueoyesj 509 34 be be VB cord-000248-zueoyesj 509 35 the the DT cord-000248-zueoyesj 509 36 norm norm NN cord-000248-zueoyesj 509 37 for for IN cord-000248-zueoyesj 509 38 all all PDT cord-000248-zueoyesj 509 39 the the DT cord-000248-zueoyesj 509 40 samples sample NNS cord-000248-zueoyesj 509 41 . . . cord-000248-zueoyesj 510 1 Figure figure NN cord-000248-zueoyesj 510 2 13 13 CD cord-000248-zueoyesj 510 3 will will MD cord-000248-zueoyesj 510 4 provide provide VB cord-000248-zueoyesj 510 5 further further JJ cord-000248-zueoyesj 510 6 evidence evidence NN cord-000248-zueoyesj 510 7 that that WDT cord-000248-zueoyesj 510 8 may may MD cord-000248-zueoyesj 510 9 indicate indicate VB cord-000248-zueoyesj 510 10 that that IN cord-000248-zueoyesj 510 11 these these DT cord-000248-zueoyesj 510 12 two two CD cord-000248-zueoyesj 510 13 samples sample NNS cord-000248-zueoyesj 510 14 are be VBP cord-000248-zueoyesj 510 15 outliers outlier NNS cord-000248-zueoyesj 510 16 or or CC cord-000248-zueoyesj 510 17 not not RB cord-000248-zueoyesj 510 18 to to IN cord-000248-zueoyesj 510 19 the the DT cord-000248-zueoyesj 510 20 overall overall JJ cord-000248-zueoyesj 510 21 trend trend NN cord-000248-zueoyesj 510 22 . . . cord-000248-zueoyesj 511 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 512 1 /journal.pone.0012262.g012 /journal.pone.0012262.g012 NFP cord-000248-zueoyesj 512 2 with with IN cord-000248-zueoyesj 512 3 the the DT cord-000248-zueoyesj 512 4 dedifferentiation dedifferentiation NN cord-000248-zueoyesj 512 5 process process NN cord-000248-zueoyesj 512 6 , , , cord-000248-zueoyesj 512 7 with with IN cord-000248-zueoyesj 512 8 preoperative preoperative JJ cord-000248-zueoyesj 512 9 PSA PSA NNP cord-000248-zueoyesj 512 10 levels level NNS cord-000248-zueoyesj 512 11 and and CC cord-000248-zueoyesj 512 12 the the DT cord-000248-zueoyesj 512 13 percent percent NN cord-000248-zueoyesj 512 14 of of IN cord-000248-zueoyesj 512 15 Gleason Gleason NNP cord-000248-zueoyesj 512 16 4 4 CD cord-000248-zueoyesj 512 17 and and CC cord-000248-zueoyesj 512 18 5 5 CD cord-000248-zueoyesj 512 19 cancers cancer NNS cord-000248-zueoyesj 512 20 [ [ -LRB- cord-000248-zueoyesj 512 21 338 338 CD cord-000248-zueoyesj 512 22 ] ] -RRB- cord-000248-zueoyesj 512 23 . . . cord-000248-zueoyesj 513 1 AMACR AMACR NNP cord-000248-zueoyesj 513 2 , , , cord-000248-zueoyesj 513 3 Cyclin Cyclin NNP cord-000248-zueoyesj 513 4 G2 G2 NNP cord-000248-zueoyesj 513 5 , , , cord-000248-zueoyesj 513 6 CDK4 CDK4 NNP cord-000248-zueoyesj 513 7 and and CC cord-000248-zueoyesj 513 8 CDK7 CDK7 NNP cord-000248-zueoyesj 513 9 . . . cord-000248-zueoyesj 514 1 Other other JJ cord-000248-zueoyesj 514 2 probes probe NNS cord-000248-zueoyesj 514 3 that that WDT cord-000248-zueoyesj 514 4 also also RB cord-000248-zueoyesj 514 5 have have VBP cord-000248-zueoyesj 514 6 high high JJ cord-000248-zueoyesj 514 7 negative negative JJ cord-000248-zueoyesj 514 8 correlations correlation NNS cord-000248-zueoyesj 514 9 with with IN cord-000248-zueoyesj 514 10 the the DT cord-000248-zueoyesj 514 11 Shannon Shannon NNP cord-000248-zueoyesj 514 12 Normalized Normalized NNP cord-000248-zueoyesj 514 13 Entropy Entropy NNP cord-000248-zueoyesj 514 14 correspond correspond VBP cord-000248-zueoyesj 514 15 to to IN cord-000248-zueoyesj 514 16 CCNG2 ccng2 XX cord-000248-zueoyesj 515 1 ( ( -LRB- cord-000248-zueoyesj 515 2 Cyclin Cyclin NNP cord-000248-zueoyesj 515 3 G2 G2 NNP cord-000248-zueoyesj 515 4 ) ) -RRB- cord-000248-zueoyesj 515 5 CR598707 CR598707 NNP cord-000248-zueoyesj 515 6 , , , cord-000248-zueoyesj 515 7 CDK4 CDK4 NNP cord-000248-zueoyesj 515 8 ( ( -LRB- cord-000248-zueoyesj 515 9 Cyclin Cyclin NNP cord-000248-zueoyesj 515 10 - - HYPH cord-000248-zueoyesj 515 11 dependent dependent JJ cord-000248-zueoyesj 515 12 kinase kinase NN cord-000248-zueoyesj 515 13 4 4 CD cord-000248-zueoyesj 515 14 ) ) -RRB- cord-000248-zueoyesj 515 15 , , , cord-000248-zueoyesj 515 16 CDK7 CDK7 NNP cord-000248-zueoyesj 516 1 ( ( -LRB- cord-000248-zueoyesj 516 2 Cyclin Cyclin NNP cord-000248-zueoyesj 516 3 - - HYPH cord-000248-zueoyesj 516 4 dependent dependent JJ cord-000248-zueoyesj 516 5 kinase kinase NN cord-000248-zueoyesj 516 6 7 7 CD cord-000248-zueoyesj 516 7 , , , cord-000248-zueoyesj 516 8 TFIIH TFIIH NNP cord-000248-zueoyesj 516 9 basal basal NN cord-000248-zueoyesj 516 10 transcription transcription NN cord-000248-zueoyesj 516 11 factor factor NN cord-000248-zueoyesj 516 12 complex complex NN cord-000248-zueoyesj 516 13 kinase kinase NN cord-000248-zueoyesj 516 14 subunit subunit NN cord-000248-zueoyesj 516 15 ) ) -RRB- cord-000248-zueoyesj 516 16 [ [ -LRB- cord-000248-zueoyesj 516 17 339 339 CD cord-000248-zueoyesj 516 18 ] ] -RRB- cord-000248-zueoyesj 516 19 , , , cord-000248-zueoyesj 516 20 and and CC cord-000248-zueoyesj 516 21 AMACR AMACR NNP cord-000248-zueoyesj 516 22 ( ( -LRB- cord-000248-zueoyesj 516 23 Alpha alpha NN cord-000248-zueoyesj 516 24 - - HYPH cord-000248-zueoyesj 516 25 methylacyl methylacyl JJ cord-000248-zueoyesj 516 26 - - HYPH cord-000248-zueoyesj 516 27 CoA coa NN cord-000248-zueoyesj 516 28 racemase racemase NN cord-000248-zueoyesj 516 29 ) ) -RRB- cord-000248-zueoyesj 516 30 , , , cord-000248-zueoyesj 516 31 an an DT cord-000248-zueoyesj 516 32 ' ' `` cord-000248-zueoyesj 516 33 ' ' `` cord-000248-zueoyesj 516 34 obscure obscure JJ cord-000248-zueoyesj 516 35 metabolic metabolic JJ cord-000248-zueoyesj 516 36 enzyme enzyme NN cord-000248-zueoyesj 516 37 ( ( -LRB- cord-000248-zueoyesj 516 38 that that DT cord-000248-zueoyesj 516 39 has have VBZ cord-000248-zueoyesj 516 40 taken take VBN cord-000248-zueoyesj 516 41 ) ) -RRB- cord-000248-zueoyesj 516 42 centre centre NN cord-000248-zueoyesj 516 43 stage stage NN cord-000248-zueoyesj 516 44 ' ' '' cord-000248-zueoyesj 516 45 ' ' '' cord-000248-zueoyesj 516 46 [ [ -LRB- cord-000248-zueoyesj 516 47 340 340 CD cord-000248-zueoyesj 516 48 ] ] -RRB- cord-000248-zueoyesj 516 49 as as IN cord-000248-zueoyesj 516 50 judged judge VBN cord-000248-zueoyesj 516 51 by by IN cord-000248-zueoyesj 516 52 the the DT cord-000248-zueoyesj 516 53 extraordinary extraordinary JJ cord-000248-zueoyesj 516 54 convergence convergence NN cord-000248-zueoyesj 516 55 to to IN cord-000248-zueoyesj 516 56 this this DT cord-000248-zueoyesj 516 57 biomarker biomarker NN cord-000248-zueoyesj 516 58 in in IN cord-000248-zueoyesj 516 59 prostate prostate NN cord-000248-zueoyesj 516 60 . . . cord-000248-zueoyesj 517 1 We -PRON- PRP cord-000248-zueoyesj 517 2 believe believe VBP cord-000248-zueoyesj 517 3 that that IN cord-000248-zueoyesj 517 4 our -PRON- PRP$ cord-000248-zueoyesj 517 5 result result NN cord-000248-zueoyesj 517 6 is be VBZ cord-000248-zueoyesj 517 7 an an DT cord-000248-zueoyesj 517 8 important important JJ cord-000248-zueoyesj 517 9 finding finding NN cord-000248-zueoyesj 517 10 . . . cord-000248-zueoyesj 518 1 AMACR AMACR NNP cord-000248-zueoyesj 518 2 was be VBD cord-000248-zueoyesj 518 3 not not RB cord-000248-zueoyesj 518 4 judged judge VBN cord-000248-zueoyesj 518 5 of of IN cord-000248-zueoyesj 518 6 importance importance NN cord-000248-zueoyesj 518 7 according accord VBG cord-000248-zueoyesj 518 8 to to IN cord-000248-zueoyesj 518 9 the the DT cord-000248-zueoyesj 518 10 methodology methodology NN cord-000248-zueoyesj 518 11 used use VBN cord-000248-zueoyesj 518 12 in in IN cord-000248-zueoyesj 518 13 [ [ -LRB- cord-000248-zueoyesj 518 14 332 332 CD cord-000248-zueoyesj 518 15 ] ] -RRB- cord-000248-zueoyesj 518 16 and and CC cord-000248-zueoyesj 518 17 it -PRON- PRP cord-000248-zueoyesj 518 18 was be VBD cord-000248-zueoyesj 518 19 barely barely RB cord-000248-zueoyesj 518 20 cited cite VBN cord-000248-zueoyesj 518 21 in in IN cord-000248-zueoyesj 518 22 that that DT cord-000248-zueoyesj 518 23 manuscript manuscript NN cord-000248-zueoyesj 518 24 . . . cord-000248-zueoyesj 519 1 Here here RB cord-000248-zueoyesj 519 2 we -PRON- PRP cord-000248-zueoyesj 519 3 present present VBP cord-000248-zueoyesj 519 4 results result NNS cord-000248-zueoyesj 519 5 , , , cord-000248-zueoyesj 519 6 from from IN cord-000248-zueoyesj 519 7 an an DT cord-000248-zueoyesj 519 8 unifying unify VBG cord-000248-zueoyesj 519 9 biological biological JJ cord-000248-zueoyesj 519 10 and and CC cord-000248-zueoyesj 519 11 informational informational JJ cord-000248-zueoyesj 519 12 principle principle NN cord-000248-zueoyesj 519 13 , , , cord-000248-zueoyesj 519 14 which which WDT cord-000248-zueoyesj 519 15 allows allow VBZ cord-000248-zueoyesj 519 16 ( ( -LRB- cord-000248-zueoyesj 519 17 using use VBG cord-000248-zueoyesj 519 18 Ref Ref NNP cord-000248-zueoyesj 519 19 . . . cord-000248-zueoyesj 520 1 [ [ -LRB- cord-000248-zueoyesj 520 2 332 332 CD cord-000248-zueoyesj 520 3 ] ] -RRB- cord-000248-zueoyesj 520 4 's 's POS cord-000248-zueoyesj 520 5 own own JJ cord-000248-zueoyesj 520 6 data datum NNS cord-000248-zueoyesj 520 7 ) ) -RRB- cord-000248-zueoyesj 521 1 the the DT cord-000248-zueoyesj 521 2 identification identification NN cord-000248-zueoyesj 521 3 of of IN cord-000248-zueoyesj 521 4 the the DT cord-000248-zueoyesj 521 5 most most RBS cord-000248-zueoyesj 521 6 central central JJ cord-000248-zueoyesj 521 7 current current JJ cord-000248-zueoyesj 521 8 biomarker biomarker NN cord-000248-zueoyesj 521 9 with with IN cord-000248-zueoyesj 521 10 a a DT cord-000248-zueoyesj 521 11 truly truly RB cord-000248-zueoyesj 521 12 compelling compelling JJ cord-000248-zueoyesj 521 13 body body NN cord-000248-zueoyesj 521 14 of of IN cord-000248-zueoyesj 521 15 support support NN cord-000248-zueoyesj 521 16 in in IN cord-000248-zueoyesj 521 17 independent independent JJ cord-000248-zueoyesj 521 18 studies study NNS cord-000248-zueoyesj 521 19 [ [ -LRB- cord-000248-zueoyesj 521 20 [ [ -LRB- cord-000248-zueoyesj 521 21 490 490 CD cord-000248-zueoyesj 521 22 , , , cord-000248-zueoyesj 521 23 491 491 CD cord-000248-zueoyesj 521 24 ] ] -RRB- cord-000248-zueoyesj 521 25 . . . cord-000248-zueoyesj 522 1 Knockdown knockdown NN cord-000248-zueoyesj 522 2 of of IN cord-000248-zueoyesj 522 3 BRCA1 BRCA1 NNP cord-000248-zueoyesj 522 4 results result NNS cord-000248-zueoyesj 522 5 in in IN cord-000248-zueoyesj 522 6 the the DT cord-000248-zueoyesj 522 7 accumulation accumulation NN cord-000248-zueoyesj 522 8 of of IN cord-000248-zueoyesj 522 9 multinucleated multinucleated JJ cord-000248-zueoyesj 522 10 cells cell NNS cord-000248-zueoyesj 522 11 , , , cord-000248-zueoyesj 522 12 indicating indicate VBG cord-000248-zueoyesj 522 13 that that IN cord-000248-zueoyesj 522 14 BRCA1 BRCA1 NNP cord-000248-zueoyesj 522 15 regulates regulate VBZ cord-000248-zueoyesj 522 16 gene gene NN cord-000248-zueoyesj 522 17 expression expression NN cord-000248-zueoyesj 522 18 of of IN cord-000248-zueoyesj 522 19 an an DT cord-000248-zueoyesj 522 20 orderly orderly JJ cord-000248-zueoyesj 522 21 progression progression NN cord-000248-zueoyesj 522 22 during during IN cord-000248-zueoyesj 522 23 mitosis mitosis NN cord-000248-zueoyesj 522 24 [ [ -LRB- cord-000248-zueoyesj 522 25 492 492 CD cord-000248-zueoyesj 522 26 ] ] -RRB- cord-000248-zueoyesj 522 27 , , , cord-000248-zueoyesj 522 28 preserving preserve VBG cord-000248-zueoyesj 522 29 chromosomal chromosomal JJ cord-000248-zueoyesj 522 30 stability stability NN cord-000248-zueoyesj 522 31 [ [ -LRB- cord-000248-zueoyesj 522 32 490 490 CD cord-000248-zueoyesj 522 33 ] ] -RRB- cord-000248-zueoyesj 522 34 . . . cord-000248-zueoyesj 523 1 BRCA1 BRCA1 NNP cord-000248-zueoyesj 523 2 showed show VBD cord-000248-zueoyesj 523 3 decreased decreased JJ cord-000248-zueoyesj 523 4 expression expression NN cord-000248-zueoyesj 523 5 in in IN cord-000248-zueoyesj 523 6 a a DT cord-000248-zueoyesj 523 7 study study NN cord-000248-zueoyesj 523 8 involving involve VBG cord-000248-zueoyesj 523 9 immortalized immortalize VBN cord-000248-zueoyesj 523 10 prostate prostate NN cord-000248-zueoyesj 523 11 epithelial epithelial JJ cord-000248-zueoyesj 523 12 cells cell NNS cord-000248-zueoyesj 523 13 before before IN cord-000248-zueoyesj 523 14 and and CC cord-000248-zueoyesj 523 15 after after IN cord-000248-zueoyesj 523 16 their -PRON- PRP$ cord-000248-zueoyesj 523 17 conversion conversion NN cord-000248-zueoyesj 523 18 to to IN cord-000248-zueoyesj 523 19 tumorigenicity tumorigenicity NN cord-000248-zueoyesj 523 20 [ [ -LRB- cord-000248-zueoyesj 523 21 493 493 CD cord-000248-zueoyesj 523 22 ] ] -RRB- cord-000248-zueoyesj 523 23 . . . cord-000248-zueoyesj 524 1 Lack lack NN cord-000248-zueoyesj 524 2 of of IN cord-000248-zueoyesj 524 3 BRCA1 BRCA1 NNP cord-000248-zueoyesj 524 4 function function NN cord-000248-zueoyesj 524 5 may may MD cord-000248-zueoyesj 524 6 impair impair VB cord-000248-zueoyesj 524 7 activation activation NN cord-000248-zueoyesj 524 8 of of IN cord-000248-zueoyesj 524 9 STAT3 STAT3 NNP cord-000248-zueoyesj 524 10 [ [ -LRB- cord-000248-zueoyesj 524 11 494 494 CD cord-000248-zueoyesj 524 12 ] ] -RRB- cord-000248-zueoyesj 524 13 . . . cord-000248-zueoyesj 525 1 Inactivation inactivation NN cord-000248-zueoyesj 525 2 of of IN cord-000248-zueoyesj 525 3 TP53 TP53 NNP cord-000248-zueoyesj 525 4 by by IN cord-000248-zueoyesj 525 5 somatic somatic JJ cord-000248-zueoyesj 525 6 mutations mutation NNS cord-000248-zueoyesj 525 7 is be VBZ cord-000248-zueoyesj 525 8 also also RB cord-000248-zueoyesj 525 9 associated associate VBN cord-000248-zueoyesj 525 10 to to IN cord-000248-zueoyesj 525 11 the the DT cord-000248-zueoyesj 525 12 panel panel NN cord-000248-zueoyesj 525 13 of of IN cord-000248-zueoyesj 525 14 disruptions disruption NNS cord-000248-zueoyesj 525 15 which which WDT cord-000248-zueoyesj 525 16 are be VBP cord-000248-zueoyesj 525 17 common common JJ cord-000248-zueoyesj 525 18 for for IN cord-000248-zueoyesj 525 19 this this DT cord-000248-zueoyesj 525 20 ' ' '' cord-000248-zueoyesj 525 21 ' ' `` cord-000248-zueoyesj 525 22 tumor tumor NN cord-000248-zueoyesj 525 23 suppressor suppressor NN cord-000248-zueoyesj 525 24 ' ' '' cord-000248-zueoyesj 525 25 ' ' '' cord-000248-zueoyesj 525 26 [ [ -LRB- cord-000248-zueoyesj 525 27 113 113 CD cord-000248-zueoyesj 525 28 ] ] -RRB- cord-000248-zueoyesj 525 29 . . . cord-000248-zueoyesj 526 1 One one CD cord-000248-zueoyesj 526 2 possible possible JJ cord-000248-zueoyesj 526 3 mechanism mechanism NN cord-000248-zueoyesj 526 4 for for IN cord-000248-zueoyesj 526 5 gene gene NN cord-000248-zueoyesj 526 6 silencing silencing NN cord-000248-zueoyesj 526 7 is be VBZ cord-000248-zueoyesj 526 8 CpG CpG NNP cord-000248-zueoyesj 526 9 island island NNP cord-000248-zueoyesj 526 10 methylation methylation NNP cord-000248-zueoyesj 526 11 . . . cord-000248-zueoyesj 527 1 Rabiau Rabiau NNP cord-000248-zueoyesj 527 2 et et IN cord-000248-zueoyesj 527 3 al.show al.show NN cord-000248-zueoyesj 527 4 in in IN cord-000248-zueoyesj 527 5 [ [ -LRB- cord-000248-zueoyesj 527 6 495 495 CD cord-000248-zueoyesj 527 7 ] ] -RRB- cord-000248-zueoyesj 527 8 that that IN cord-000248-zueoyesj 527 9 BRCA1 BRCA1 NNP cord-000248-zueoyesj 527 10 , , , cord-000248-zueoyesj 527 11 RASSF1 RASSF1 NNS cord-000248-zueoyesj 527 12 , , , cord-000248-zueoyesj 527 13 GSTP1 GSTP1 NNP cord-000248-zueoyesj 527 14 and and CC cord-000248-zueoyesj 527 15 EPHB2 ephb2 NN cord-000248-zueoyesj 528 1 promoter promoter NN cord-000248-zueoyesj 528 2 methylation methylation NNP cord-000248-zueoyesj 528 3 is be VBZ cord-000248-zueoyesj 528 4 common common JJ cord-000248-zueoyesj 528 5 in in IN cord-000248-zueoyesj 528 6 prostate prostate NN cord-000248-zueoyesj 528 7 biopsy biopsy NN cord-000248-zueoyesj 528 8 samples sample NNS cord-000248-zueoyesj 528 9 . . . cord-000248-zueoyesj 529 1 Mannicia Mannicia NNP cord-000248-zueoyesj 529 2 et et NNP cord-000248-zueoyesj 529 3 al al NNP cord-000248-zueoyesj 529 4 . . . cord-000248-zueoyesj 530 1 suggest suggest VBP cord-000248-zueoyesj 530 2 that that IN cord-000248-zueoyesj 530 3 the the DT cord-000248-zueoyesj 530 4 mitochondrial mitochondrial JJ cord-000248-zueoyesj 530 5 localization localization NN cord-000248-zueoyesj 530 6 of of IN cord-000248-zueoyesj 530 7 BRCA1 BRCA1 NNP cord-000248-zueoyesj 530 8 proteins protein NNS cord-000248-zueoyesj 530 9 may may MD cord-000248-zueoyesj 530 10 be be VB cord-000248-zueoyesj 530 11 a a DT cord-000248-zueoyesj 530 12 significant significant JJ cord-000248-zueoyesj 530 13 factor factor NN cord-000248-zueoyesj 530 14 in in IN cord-000248-zueoyesj 530 15 regulating regulate VBG cord-000248-zueoyesj 530 16 the the DT cord-000248-zueoyesj 530 17 mitochondrial mitochondrial JJ cord-000248-zueoyesj 530 18 DNA dna NN cord-000248-zueoyesj 530 19 damage damage NN cord-000248-zueoyesj 530 20 [ [ -LRB- cord-000248-zueoyesj 530 21 5 5 CD cord-000248-zueoyesj 530 22 ] ] -RRB- cord-000248-zueoyesj 530 23 . . . cord-000248-zueoyesj 531 1 SFPQ SFPQ NNP cord-000248-zueoyesj 531 2 -(Polypyrimidine -(polypyrimidine NN cord-000248-zueoyesj 531 3 tract tract NN cord-000248-zueoyesj 531 4 - - HYPH cord-000248-zueoyesj 531 5 binding bind VBG cord-000248-zueoyesj 531 6 protein protein NN cord-000248-zueoyesj 531 7 - - HYPH cord-000248-zueoyesj 531 8 associated associate VBN cord-000248-zueoyesj 531 9 splicing splicing NN cord-000248-zueoyesj 531 10 factor factor NN cord-000248-zueoyesj 531 11 ) ) -RRB- cord-000248-zueoyesj 531 12 . . . cord-000248-zueoyesj 532 1 The the DT cord-000248-zueoyesj 532 2 most most RBS cord-000248-zueoyesj 532 3 positively positively RB cord-000248-zueoyesj 532 4 correlated correlate VBN cord-000248-zueoyesj 532 5 gene gene NN cord-000248-zueoyesj 532 6 with with IN cord-000248-zueoyesj 532 7 the the DT cord-000248-zueoyesj 532 8 loss loss NN cord-000248-zueoyesj 532 9 of of IN cord-000248-zueoyesj 532 10 Normalized Normalized NNP cord-000248-zueoyesj 532 11 Shannon Shannon NNP cord-000248-zueoyesj 532 12 Entropy Entropy NNP cord-000248-zueoyesj 532 13 is be VBZ cord-000248-zueoyesj 532 14 SFPQ SFPQ NNP cord-000248-zueoyesj 532 15 / / SYM cord-000248-zueoyesj 532 16 PSF PSF NNP cord-000248-zueoyesj 532 17 ( ( -LRB- cord-000248-zueoyesj 532 18 Polypyrimidine polypyrimidine JJ cord-000248-zueoyesj 532 19 tract tract NN cord-000248-zueoyesj 532 20 - - HYPH cord-000248-zueoyesj 532 21 binding bind VBG cord-000248-zueoyesj 532 22 protein protein NN cord-000248-zueoyesj 532 23 - - HYPH cord-000248-zueoyesj 532 24 associated associate VBN cord-000248-zueoyesj 532 25 splicing splicing NN cord-000248-zueoyesj 532 26 factor factor NN cord-000248-zueoyesj 532 27 ) ) -RRB- cord-000248-zueoyesj 532 28 ( ( -LRB- cord-000248-zueoyesj 532 29 Spearman Spearman NNP cord-000248-zueoyesj 532 30 correlation correlation NN cord-000248-zueoyesj 532 31 of of IN cord-000248-zueoyesj 532 32 0.7902 0.7902 CD cord-000248-zueoyesj 532 33 ) ) -RRB- cord-000248-zueoyesj 532 34 , , , cord-000248-zueoyesj 532 35 a a DT cord-000248-zueoyesj 532 36 multifaceted multifaceted JJ cord-000248-zueoyesj 532 37 nuclear nuclear JJ cord-000248-zueoyesj 532 38 factor factor NN cord-000248-zueoyesj 532 39 [ [ -LRB- cord-000248-zueoyesj 532 40 496 496 CD cord-000248-zueoyesj 532 41 , , , cord-000248-zueoyesj 532 42 497 497 CD cord-000248-zueoyesj 532 43 ] ] -RRB- cord-000248-zueoyesj 532 44 which which WDT cord-000248-zueoyesj 532 45 is be VBZ cord-000248-zueoyesj 532 46 also also RB cord-000248-zueoyesj 532 47 a a DT cord-000248-zueoyesj 532 48 putative putative JJ cord-000248-zueoyesj 532 49 regulator regulator NN cord-000248-zueoyesj 532 50 of of IN cord-000248-zueoyesj 532 51 growth growth NN cord-000248-zueoyesj 532 52 factor factor NN cord-000248-zueoyesj 532 53 - - HYPH cord-000248-zueoyesj 532 54 stimulated stimulate VBN cord-000248-zueoyesj 532 55 gene gene NN cord-000248-zueoyesj 532 56 expression expression NN cord-000248-zueoyesj 532 57 [ [ -LRB- cord-000248-zueoyesj 532 58 498 498 CD cord-000248-zueoyesj 532 59 ] ] -RRB- cord-000248-zueoyesj 532 60 . . . cord-000248-zueoyesj 533 1 This this DT cord-000248-zueoyesj 533 2 is be VBZ cord-000248-zueoyesj 533 3 extremely extremely RB cord-000248-zueoyesj 533 4 interesting interesting JJ cord-000248-zueoyesj 533 5 as as IN cord-000248-zueoyesj 533 6 it -PRON- PRP cord-000248-zueoyesj 533 7 has have VBZ cord-000248-zueoyesj 533 8 been be VBN cord-000248-zueoyesj 533 9 recently recently RB cord-000248-zueoyesj 533 10 shown show VBN cord-000248-zueoyesj 533 11 that that IN cord-000248-zueoyesj 533 12 the the DT cord-000248-zueoyesj 533 13 AR AR NNP cord-000248-zueoyesj 533 14 / / SYM cord-000248-zueoyesj 533 15 PSF PSF NNP cord-000248-zueoyesj 533 16 complex complex NN cord-000248-zueoyesj 533 17 interacts interact VBZ cord-000248-zueoyesj 533 18 with with IN cord-000248-zueoyesj 533 19 human human JJ cord-000248-zueoyesj 533 20 PSA PSA NNP cord-000248-zueoyesj 533 21 gene gene NN cord-000248-zueoyesj 533 22 and and CC cord-000248-zueoyesj 533 23 that that IN cord-000248-zueoyesj 533 24 PSF PSF NNP cord-000248-zueoyesj 533 25 inhibits inhibit VBZ cord-000248-zueoyesj 533 26 AR AR NNP cord-000248-zueoyesj 533 27 transcriptional transcriptional JJ cord-000248-zueoyesj 533 28 activity activity NN cord-000248-zueoyesj 533 29 [ [ -LRB- cord-000248-zueoyesj 533 30 499 499 CD cord-000248-zueoyesj 533 31 ] ] -RRB- cord-000248-zueoyesj 533 32 . . . cord-000248-zueoyesj 534 1 The the DT cord-000248-zueoyesj 534 2 loss loss NN cord-000248-zueoyesj 534 3 of of IN cord-000248-zueoyesj 534 4 expression expression NN cord-000248-zueoyesj 534 5 of of IN cord-000248-zueoyesj 534 6 SFPQ SFPQ NNP cord-000248-zueoyesj 534 7 and and CC cord-000248-zueoyesj 534 8 other other JJ cord-000248-zueoyesj 534 9 proteins protein NNS cord-000248-zueoyesj 534 10 that that WDT cord-000248-zueoyesj 534 11 together together RB cord-000248-zueoyesj 534 12 regulate regulate VBP cord-000248-zueoyesj 534 13 androgen androgen NN cord-000248-zueoyesj 534 14 receptor receptor NN cord-000248-zueoyesj 534 15 - - HYPH cord-000248-zueoyesj 534 16 mediated mediate VBN cord-000248-zueoyesj 534 17 gene gene NN cord-000248-zueoyesj 534 18 transcription transcription NN cord-000248-zueoyesj 534 19 [ [ -LRB- cord-000248-zueoyesj 534 20 500 500 CD cord-000248-zueoyesj 534 21 ] ] -RRB- cord-000248-zueoyesj 535 1 ( ( -LRB- cord-000248-zueoyesj 535 2 see see VB cord-000248-zueoyesj 535 3 also also RB cord-000248-zueoyesj 535 4 [ [ -LRB- cord-000248-zueoyesj 535 5 501 501 CD cord-000248-zueoyesj 535 6 , , , cord-000248-zueoyesj 535 7 502 502 CD cord-000248-zueoyesj 535 8 ] ] -RRB- cord-000248-zueoyesj 535 9 ) ) -RRB- cord-000248-zueoyesj 535 10 may may MD cord-000248-zueoyesj 535 11 indicate indicate VB cord-000248-zueoyesj 535 12 they -PRON- PRP cord-000248-zueoyesj 535 13 have have VBP cord-000248-zueoyesj 535 14 a a DT cord-000248-zueoyesj 535 15 role role NN cord-000248-zueoyesj 535 16 not not RB cord-000248-zueoyesj 535 17 only only RB cord-000248-zueoyesj 535 18 as as IN cord-000248-zueoyesj 535 19 a a DT cord-000248-zueoyesj 535 20 biomarker biomarker NN cord-000248-zueoyesj 535 21 of of IN cord-000248-zueoyesj 535 22 the the DT cord-000248-zueoyesj 535 23 progression progression NN cord-000248-zueoyesj 535 24 and and CC cord-000248-zueoyesj 535 25 well well UH cord-000248-zueoyesj 535 26 as as IN cord-000248-zueoyesj 535 27 transitions transition NNS cord-000248-zueoyesj 535 28 of of IN cord-000248-zueoyesj 535 29 the the DT cord-000248-zueoyesj 535 30 disease disease NN cord-000248-zueoyesj 535 31 to to IN cord-000248-zueoyesj 535 32 androgen androgen NN cord-000248-zueoyesj 535 33 independence independence NN cord-000248-zueoyesj 535 34 . . . cord-000248-zueoyesj 536 1 In in IN cord-000248-zueoyesj 536 2 a a DT cord-000248-zueoyesj 536 3 study study NN cord-000248-zueoyesj 536 4 of of IN cord-000248-zueoyesj 536 5 human human JJ cord-000248-zueoyesj 536 6 labor labor NN cord-000248-zueoyesj 536 7 , , , cord-000248-zueoyesj 536 8 Dong Dong NNP cord-000248-zueoyesj 536 9 et et FW cord-000248-zueoyesj 536 10 al al NNP cord-000248-zueoyesj 536 11 . . NNP cord-000248-zueoyesj 536 12 , , , cord-000248-zueoyesj 536 13 also also RB cord-000248-zueoyesj 536 14 showed show VBD cord-000248-zueoyesj 536 15 that that IN cord-000248-zueoyesj 536 16 SFPQ SFPQ NNP cord-000248-zueoyesj 536 17 acts act VBZ cord-000248-zueoyesj 536 18 as as IN cord-000248-zueoyesj 536 19 a a DT cord-000248-zueoyesj 536 20 Progesterone Progesterone NNP cord-000248-zueoyesj 536 21 Receptor receptor NN cord-000248-zueoyesj 536 22 corepressor corepressor NN cord-000248-zueoyesj 536 23 , , , cord-000248-zueoyesj 536 24 thus thus RB cord-000248-zueoyesj 536 25 putatively putatively RB cord-000248-zueoyesj 536 26 contributing contribute VBG cord-000248-zueoyesj 536 27 to to IN cord-000248-zueoyesj 536 28 the the DT cord-000248-zueoyesj 536 29 functional functional JJ cord-000248-zueoyesj 536 30 withdrawal withdrawal NN cord-000248-zueoyesj 536 31 of of IN cord-000248-zueoyesj 536 32 progesterone progesterone NN cord-000248-zueoyesj 536 33 [ [ -LRB- cord-000248-zueoyesj 536 34 503 503 CD cord-000248-zueoyesj 536 35 ] ] -RRB- cord-000248-zueoyesj 536 36 . . . cord-000248-zueoyesj 537 1 We -PRON- PRP cord-000248-zueoyesj 537 2 will will MD cord-000248-zueoyesj 537 3 return return VB cord-000248-zueoyesj 537 4 to to IN cord-000248-zueoyesj 537 5 this this DT cord-000248-zueoyesj 537 6 particular particular JJ cord-000248-zueoyesj 537 7 gene gene NN cord-000248-zueoyesj 537 8 later later RB cord-000248-zueoyesj 537 9 on on IN cord-000248-zueoyesj 537 10 the the DT cord-000248-zueoyesj 537 11 ' ' `` cord-000248-zueoyesj 537 12 Discussion discussion NN cord-000248-zueoyesj 537 13 ' ' '' cord-000248-zueoyesj 537 14 section section NN cord-000248-zueoyesj 537 15 as as IN cord-000248-zueoyesj 537 16 new new JJ cord-000248-zueoyesj 537 17 evidence evidence NN cord-000248-zueoyesj 537 18 of of IN cord-000248-zueoyesj 537 19 its -PRON- PRP$ cord-000248-zueoyesj 537 20 role role NN cord-000248-zueoyesj 537 21 in in IN cord-000248-zueoyesj 537 22 nuclear nuclear JJ cord-000248-zueoyesj 537 23 organization organization NN cord-000248-zueoyesj 537 24 has have VBZ cord-000248-zueoyesj 537 25 been be VBN cord-000248-zueoyesj 537 26 documented document VBN cord-000248-zueoyesj 537 27 . . . cord-000248-zueoyesj 538 1 CD40 CD40 NNP cord-000248-zueoyesj 538 2 -(TNFRSF5 -(TNFRSF5 NNP cord-000248-zueoyesj 538 3 , , , cord-000248-zueoyesj 538 4 B b NN cord-000248-zueoyesj 538 5 - - HYPH cord-000248-zueoyesj 538 6 cell cell NN cord-000248-zueoyesj 538 7 surface surface NN cord-000248-zueoyesj 538 8 antigen antigen NN cord-000248-zueoyesj 538 9 CD40 CD40 NNP cord-000248-zueoyesj 538 10 ) ) -RRB- cord-000248-zueoyesj 538 11 . . . cord-000248-zueoyesj 539 1 The the DT cord-000248-zueoyesj 539 2 loss loss NN cord-000248-zueoyesj 539 3 of of IN cord-000248-zueoyesj 539 4 Normalized Normalized NNP cord-000248-zueoyesj 539 5 Shannon Shannon NNP cord-000248-zueoyesj 539 6 Entropy Entropy NNP cord-000248-zueoyesj 539 7 gives give VBZ cord-000248-zueoyesj 539 8 us -PRON- PRP cord-000248-zueoyesj 539 9 several several JJ cord-000248-zueoyesj 539 10 markers marker NNS cord-000248-zueoyesj 539 11 that that WDT cord-000248-zueoyesj 539 12 indicate indicate VBP cord-000248-zueoyesj 539 13 a a DT cord-000248-zueoyesj 539 14 de de NN cord-000248-zueoyesj 539 15 - - NN cord-000248-zueoyesj 539 16 differentiation differentiation NN cord-000248-zueoyesj 539 17 from from IN cord-000248-zueoyesj 539 18 a a DT cord-000248-zueoyesj 539 19 epithelial epithelial JJ cord-000248-zueoyesj 539 20 basal basal NN cord-000248-zueoyesj 539 21 phenotype phenotype NN cord-000248-zueoyesj 539 22 and and CC cord-000248-zueoyesj 539 23 an an DT cord-000248-zueoyesj 539 24 increasing increase VBG cord-000248-zueoyesj 539 25 loss loss NN cord-000248-zueoyesj 539 26 of of IN cord-000248-zueoyesj 539 27 control control NN cord-000248-zueoyesj 539 28 of of IN cord-000248-zueoyesj 539 29 cell cell NN cord-000248-zueoyesj 539 30 cycle cycle NN cord-000248-zueoyesj 539 31 regulation regulation NN cord-000248-zueoyesj 539 32 ( ( -LRB- cord-000248-zueoyesj 539 33 due due IN cord-000248-zueoyesj 539 34 to to IN cord-000248-zueoyesj 539 35 uncoordinated uncoordinated JJ cord-000248-zueoyesj 539 36 upregulation upregulation NN cord-000248-zueoyesj 539 37 of of IN cord-000248-zueoyesj 539 38 CDK4 CDK4 NNP cord-000248-zueoyesj 539 39 , , , cord-000248-zueoyesj 539 40 CDK7 CDK7 NNP cord-000248-zueoyesj 539 41 , , , cord-000248-zueoyesj 539 42 CCNG2 ccng2 IN cord-000248-zueoyesj 539 43 with with IN cord-000248-zueoyesj 539 44 their -PRON- PRP$ cord-000248-zueoyesj 539 45 functional functional JJ cord-000248-zueoyesj 539 46 partners partner NNS cord-000248-zueoyesj 539 47 ) ) -RRB- cord-000248-zueoyesj 539 48 . . . cord-000248-zueoyesj 540 1 This this DT cord-000248-zueoyesj 540 2 poses pose VBZ cord-000248-zueoyesj 540 3 the the DT cord-000248-zueoyesj 540 4 question question NN cord-000248-zueoyesj 540 5 : : : cord-000248-zueoyesj 540 6 What what WP cord-000248-zueoyesj 540 7 can can MD cord-000248-zueoyesj 540 8 we -PRON- PRP cord-000248-zueoyesj 540 9 observe observe VB cord-000248-zueoyesj 540 10 while while IN cord-000248-zueoyesj 540 11 looking look VBG cord-000248-zueoyesj 540 12 at at IN cord-000248-zueoyesj 540 13 the the DT cord-000248-zueoyesj 540 14 genes gene NNS cord-000248-zueoyesj 540 15 that that WDT cord-000248-zueoyesj 540 16 most most RBS cord-000248-zueoyesj 540 17 positively positively RB cord-000248-zueoyesj 540 18 correlate correlate VBP cord-000248-zueoyesj 540 19 with with IN cord-000248-zueoyesj 540 20 the the DT cord-000248-zueoyesj 540 21 loss loss NN cord-000248-zueoyesj 540 22 of of IN cord-000248-zueoyesj 540 23 Normalized Normalized NNP cord-000248-zueoyesj 540 24 Shannon Shannon NNP cord-000248-zueoyesj 540 25 Entropy Entropy NNP cord-000248-zueoyesj 540 26 ? ? . cord-000248-zueoyesj 541 1 We -PRON- PRP cord-000248-zueoyesj 541 2 observe observe VBP cord-000248-zueoyesj 541 3 , , , cord-000248-zueoyesj 541 4 second second RB cord-000248-zueoyesj 541 5 on on IN cord-000248-zueoyesj 541 6 the the DT cord-000248-zueoyesj 541 7 ranking ranking NN cord-000248-zueoyesj 541 8 of of IN cord-000248-zueoyesj 541 9 all all DT cord-000248-zueoyesj 541 10 samples sample NNS cord-000248-zueoyesj 541 11 , , , cord-000248-zueoyesj 541 12 a a DT cord-000248-zueoyesj 541 13 probe probe NN cord-000248-zueoyesj 541 14 for for IN cord-000248-zueoyesj 541 15 CD40 CD40 NNP cord-000248-zueoyesj 541 16 ( ( -LRB- cord-000248-zueoyesj 541 17 TNFRSF5 tnfrsf5 XX cord-000248-zueoyesj 541 18 , , , cord-000248-zueoyesj 541 19 B b NN cord-000248-zueoyesj 541 20 - - HYPH cord-000248-zueoyesj 541 21 cell cell NN cord-000248-zueoyesj 541 22 surface surface NN cord-000248-zueoyesj 541 23 antigen antigen NN cord-000248-zueoyesj 541 24 CD40 CD40 NNP cord-000248-zueoyesj 541 25 ) ) -RRB- cord-000248-zueoyesj 541 26 , , , cord-000248-zueoyesj 541 27 BX381481 BX381481 NNP cord-000248-zueoyesj 541 28 with with IN cord-000248-zueoyesj 541 29 a a DT cord-000248-zueoyesj 541 30 Spearman Spearman NNP cord-000248-zueoyesj 541 31 correlation correlation NN cord-000248-zueoyesj 541 32 of of IN cord-000248-zueoyesj 541 33 0.7616 0.7616 CD cord-000248-zueoyesj 541 34 . . . cord-000248-zueoyesj 542 1 Loss loss NN cord-000248-zueoyesj 542 2 of of IN cord-000248-zueoyesj 542 3 CD40 CD40 NNP cord-000248-zueoyesj 542 4 expression expression NN cord-000248-zueoyesj 542 5 has have VBZ cord-000248-zueoyesj 542 6 been be VBN cord-000248-zueoyesj 542 7 previously previously RB cord-000248-zueoyesj 542 8 reported report VBN cord-000248-zueoyesj 542 9 in in IN cord-000248-zueoyesj 542 10 prostate prostate NN cord-000248-zueoyesj 542 11 cancer cancer NN cord-000248-zueoyesj 542 12 and and CC cord-000248-zueoyesj 542 13 it -PRON- PRP cord-000248-zueoyesj 542 14 is be VBZ cord-000248-zueoyesj 542 15 the the DT cord-000248-zueoyesj 542 16 object object NN cord-000248-zueoyesj 542 17 of of IN cord-000248-zueoyesj 542 18 a a DT cord-000248-zueoyesj 542 19 study study NN cord-000248-zueoyesj 542 20 that that WDT cord-000248-zueoyesj 542 21 attempts attempt VBZ cord-000248-zueoyesj 542 22 to to TO cord-000248-zueoyesj 542 23 establish establish VB cord-000248-zueoyesj 542 24 dendritic dendritic JJ cord-000248-zueoyesj 542 25 cell cell NN cord-000248-zueoyesj 542 26 gene gene NN cord-000248-zueoyesj 542 27 therapies therapy NNS cord-000248-zueoyesj 542 28 [ [ -LRB- cord-000248-zueoyesj 542 29 504 504 CD cord-000248-zueoyesj 542 30 , , , cord-000248-zueoyesj 542 31 505 505 CD cord-000248-zueoyesj 542 32 , , , cord-000248-zueoyesj 542 33 506 506 CD cord-000248-zueoyesj 542 34 , , , cord-000248-zueoyesj 542 35 507 507 CD cord-000248-zueoyesj 542 36 , , , cord-000248-zueoyesj 542 37 508 508 CD cord-000248-zueoyesj 542 38 , , , cord-000248-zueoyesj 542 39 509 509 CD cord-000248-zueoyesj 542 40 , , , cord-000248-zueoyesj 542 41 510 510 CD cord-000248-zueoyesj 542 42 , , , cord-000248-zueoyesj 542 43 511 511 CD cord-000248-zueoyesj 542 44 , , , cord-000248-zueoyesj 542 45 512 512 CD cord-000248-zueoyesj 542 46 , , , cord-000248-zueoyesj 542 47 513 513 CD cord-000248-zueoyesj 542 48 , , , cord-000248-zueoyesj 542 49 514 514 CD cord-000248-zueoyesj 542 50 , , , cord-000248-zueoyesj 542 51 515 515 CD cord-000248-zueoyesj 542 52 , , , cord-000248-zueoyesj 542 53 516 516 CD cord-000248-zueoyesj 542 54 , , , cord-000248-zueoyesj 542 55 517 517 CD cord-000248-zueoyesj 542 56 , , , cord-000248-zueoyesj 542 57 518 518 CD cord-000248-zueoyesj 542 58 , , , cord-000248-zueoyesj 542 59 519 519 CD cord-000248-zueoyesj 542 60 , , , cord-000248-zueoyesj 542 61 520 520 CD cord-000248-zueoyesj 542 62 , , , cord-000248-zueoyesj 542 63 521 521 CD cord-000248-zueoyesj 542 64 , , , cord-000248-zueoyesj 542 65 522 522 CD cord-000248-zueoyesj 542 66 ] ] -RRB- cord-000248-zueoyesj 542 67 . . . cord-000248-zueoyesj 543 1 We -PRON- PRP cord-000248-zueoyesj 543 2 will will MD cord-000248-zueoyesj 543 3 continue continue VB cord-000248-zueoyesj 543 4 discussing discuss VBG cord-000248-zueoyesj 543 5 CD40 CD40 NNP cord-000248-zueoyesj 543 6 in in IN cord-000248-zueoyesj 543 7 the the DT cord-000248-zueoyesj 543 8 following follow VBG cord-000248-zueoyesj 543 9 subsection subsection NN cord-000248-zueoyesj 543 10 in in IN cord-000248-zueoyesj 543 11 concert concert NN cord-000248-zueoyesj 543 12 with with IN cord-000248-zueoyesj 543 13 other other JJ cord-000248-zueoyesj 543 14 genes gene NNS cord-000248-zueoyesj 543 15 . . . cord-000248-zueoyesj 544 1 Another another DT cord-000248-zueoyesj 544 2 natural natural JJ cord-000248-zueoyesj 544 3 question question NN cord-000248-zueoyesj 544 4 can can MD cord-000248-zueoyesj 544 5 be be VB cord-000248-zueoyesj 544 6 asked ask VBN cord-000248-zueoyesj 544 7 : : : cord-000248-zueoyesj 544 8 Which which WDT cord-000248-zueoyesj 544 9 is be VBZ cord-000248-zueoyesj 544 10 the the DT cord-000248-zueoyesj 544 11 extra extra JJ cord-000248-zueoyesj 544 12 information information NN cord-000248-zueoyesj 544 13 that that WDT cord-000248-zueoyesj 544 14 we -PRON- PRP cord-000248-zueoyesj 544 15 can can MD cord-000248-zueoyesj 544 16 obtain obtain VB cord-000248-zueoyesj 544 17 the the DT cord-000248-zueoyesj 544 18 by by IN cord-000248-zueoyesj 544 19 analysing analyse VBG cord-000248-zueoyesj 544 20 the the DT cord-000248-zueoyesj 544 21 correlations correlation NNS cord-000248-zueoyesj 544 22 with with IN cord-000248-zueoyesj 544 23 the the DT cord-000248-zueoyesj 544 24 MPR MPR NNP cord-000248-zueoyesj 544 25 - - HYPH cord-000248-zueoyesj 544 26 Statistical Statistical NNP cord-000248-zueoyesj 544 27 Complexity Complexity NNP cord-000248-zueoyesj 544 28 in in IN cord-000248-zueoyesj 544 29 this this DT cord-000248-zueoyesj 544 30 case case NN cord-000248-zueoyesj 544 31 ? ? . cord-000248-zueoyesj 545 1 As as IN cord-000248-zueoyesj 545 2 we -PRON- PRP cord-000248-zueoyesj 545 3 have have VBP cord-000248-zueoyesj 545 4 discussed discuss VBN cord-000248-zueoyesj 545 5 before before RB cord-000248-zueoyesj 545 6 , , , cord-000248-zueoyesj 545 7 and and CC cord-000248-zueoyesj 545 8 can can MD cord-000248-zueoyesj 545 9 be be VB cord-000248-zueoyesj 545 10 appreciated appreciate VBN cord-000248-zueoyesj 545 11 from from IN cord-000248-zueoyesj 545 12 Figure Figure NNP cord-000248-zueoyesj 545 13 14 14 CD cord-000248-zueoyesj 545 14 , , , cord-000248-zueoyesj 545 15 there there EX cord-000248-zueoyesj 545 16 is be VBZ cord-000248-zueoyesj 545 17 a a DT cord-000248-zueoyesj 545 18 strong strong JJ cord-000248-zueoyesj 545 19 correlation correlation NN cord-000248-zueoyesj 545 20 between between IN cord-000248-zueoyesj 545 21 the the DT cord-000248-zueoyesj 545 22 MPR MPR NNP cord-000248-zueoyesj 545 23 - - HYPH cord-000248-zueoyesj 545 24 Statistical Statistical NNP cord-000248-zueoyesj 545 25 Complexity Complexity NNP cord-000248-zueoyesj 545 26 and and CC cord-000248-zueoyesj 545 27 the the DT cord-000248-zueoyesj 545 28 value value NN cord-000248-zueoyesj 545 29 of of IN cord-000248-zueoyesj 545 30 the the DT cord-000248-zueoyesj 545 31 Normalized Normalized NNP cord-000248-zueoyesj 545 32 Shannon Shannon NNP cord-000248-zueoyesj 545 33 Entropy Entropy NNP cord-000248-zueoyesj 545 34 . . . cord-000248-zueoyesj 546 1 It -PRON- PRP cord-000248-zueoyesj 546 2 appears appear VBZ cord-000248-zueoyesj 546 3 in in IN cord-000248-zueoyesj 546 4 prostate prostate NN cord-000248-zueoyesj 546 5 cancer cancer NN cord-000248-zueoyesj 546 6 , , , cord-000248-zueoyesj 546 7 as as IN cord-000248-zueoyesj 546 8 in in IN cord-000248-zueoyesj 546 9 this this DT cord-000248-zueoyesj 546 10 gene gene NN cord-000248-zueoyesj 546 11 expression expression NN cord-000248-zueoyesj 546 12 dataset dataset NN cord-000248-zueoyesj 546 13 , , , cord-000248-zueoyesj 546 14 the the DT cord-000248-zueoyesj 546 15 reduction reduction NN cord-000248-zueoyesj 546 16 of of IN cord-000248-zueoyesj 546 17 Entropy Entropy NNP cord-000248-zueoyesj 546 18 is be VBZ cord-000248-zueoyesj 546 19 not not RB cord-000248-zueoyesj 546 20 the the DT cord-000248-zueoyesj 546 21 major major JJ cord-000248-zueoyesj 546 22 factor factor NN cord-000248-zueoyesj 546 23 responsible responsible JJ cord-000248-zueoyesj 546 24 for for IN cord-000248-zueoyesj 546 25 the the DT cord-000248-zueoyesj 546 26 increase increase NN cord-000248-zueoyesj 546 27 in in IN cord-000248-zueoyesj 546 28 MPR MPR NNP cord-000248-zueoyesj 546 29 - - HYPH cord-000248-zueoyesj 546 30 Statistical Statistical NNP cord-000248-zueoyesj 546 31 Complexity Complexity NNP cord-000248-zueoyesj 546 32 . . . cord-000248-zueoyesj 547 1 Again again RB cord-000248-zueoyesj 547 2 , , , cord-000248-zueoyesj 547 3 it -PRON- PRP cord-000248-zueoyesj 547 4 is be VBZ cord-000248-zueoyesj 547 5 perhaps perhaps RB cord-000248-zueoyesj 547 6 better well JJR cord-000248-zueoyesj 547 7 to to TO cord-000248-zueoyesj 547 8 now now RB cord-000248-zueoyesj 547 9 look look VB cord-000248-zueoyesj 547 10 at at IN cord-000248-zueoyesj 547 11 one one CD cord-000248-zueoyesj 547 12 of of IN cord-000248-zueoyesj 547 13 the the DT cord-000248-zueoyesj 547 14 multiplicative multiplicative JJ cord-000248-zueoyesj 547 15 factors factor NNS cord-000248-zueoyesj 547 16 of of IN cord-000248-zueoyesj 547 17 the the DT cord-000248-zueoyesj 547 18 statistical statistical JJ cord-000248-zueoyesj 547 19 complexity complexity NN cord-000248-zueoyesj 547 20 measure measure NN cord-000248-zueoyesj 547 21 , , , cord-000248-zueoyesj 547 22 the the DT cord-000248-zueoyesj 547 23 Jensen Jensen NNP cord-000248-zueoyesj 547 24 - - HYPH cord-000248-zueoyesj 547 25 Shannon Shannon NNP cord-000248-zueoyesj 547 26 divergence divergence NN cord-000248-zueoyesj 547 27 to to IN cord-000248-zueoyesj 547 28 the the DT cord-000248-zueoyesj 547 29 equiprobability equiprobability NN cord-000248-zueoyesj 547 30 distribution distribution NN cord-000248-zueoyesj 547 31 , , , cord-000248-zueoyesj 547 32 as as IN cord-000248-zueoyesj 547 33 this this DT cord-000248-zueoyesj 547 34 is be VBZ cord-000248-zueoyesj 547 35 increasing increase VBG cord-000248-zueoyesj 547 36 the the DT cord-000248-zueoyesj 547 37 MPR mpr NN cord-000248-zueoyesj 547 38 - - NN cord-000248-zueoyesj 547 39 complexity complexity NN cord-000248-zueoyesj 547 40 . . . cord-000248-zueoyesj 548 1 CD40 CD40 NNP cord-000248-zueoyesj 548 2 . . . cord-000248-zueoyesj 549 1 We -PRON- PRP cord-000248-zueoyesj 549 2 present present VBP cord-000248-zueoyesj 549 3 more more JJR cord-000248-zueoyesj 549 4 evidence evidence NN cord-000248-zueoyesj 549 5 of of IN cord-000248-zueoyesj 549 6 the the DT cord-000248-zueoyesj 549 7 case case NN cord-000248-zueoyesj 549 8 of of IN cord-000248-zueoyesj 549 9 CD40 CD40 NNP cord-000248-zueoyesj 549 10 as as IN cord-000248-zueoyesj 549 11 a a DT cord-000248-zueoyesj 549 12 biomarker biomarker NN cord-000248-zueoyesj 549 13 , , , cord-000248-zueoyesj 549 14 since since IN cord-000248-zueoyesj 549 15 a a DT cord-000248-zueoyesj 549 16 probe probe NN cord-000248-zueoyesj 549 17 for for IN cord-000248-zueoyesj 549 18 CD40 CD40 NNP cord-000248-zueoyesj 549 19 ( ( -LRB- cord-000248-zueoyesj 549 20 BX381481 BX381481 NNP cord-000248-zueoyesj 549 21 ) ) -RRB- cord-000248-zueoyesj 549 22 ranks rank VBZ cord-000248-zueoyesj 549 23 6 6 CD cord-000248-zueoyesj 549 24 th th XX cord-000248-zueoyesj 550 1 ( ( -LRB- cord-000248-zueoyesj 550 2 the the DT cord-000248-zueoyesj 550 3 Spearman Spearman NNP cord-000248-zueoyesj 550 4 correlation correlation NN cord-000248-zueoyesj 550 5 of of IN cord-000248-zueoyesj 550 6 the the DT cord-000248-zueoyesj 550 7 probe probe NN cord-000248-zueoyesj 550 8 expression expression NN cord-000248-zueoyesj 550 9 with with IN cord-000248-zueoyesj 550 10 the the DT cord-000248-zueoyesj 550 11 Jensen Jensen NNP cord-000248-zueoyesj 550 12 - - HYPH cord-000248-zueoyesj 550 13 Shannon Shannon NNP cord-000248-zueoyesj 550 14 divergence divergence NN cord-000248-zueoyesj 550 15 from from IN cord-000248-zueoyesj 550 16 the the DT cord-000248-zueoyesj 550 17 equiprobability equiprobability NN cord-000248-zueoyesj 550 18 distribution distribution NN cord-000248-zueoyesj 550 19 is be VBZ cord-000248-zueoyesj 550 20 20.5764 20.5764 CD cord-000248-zueoyesj 550 21 ) ) -RRB- cord-000248-zueoyesj 550 22 . . . cord-000248-zueoyesj 551 1 CD40 CD40 NNP cord-000248-zueoyesj 551 2 is be VBZ cord-000248-zueoyesj 551 3 a a DT cord-000248-zueoyesj 551 4 member member NN cord-000248-zueoyesj 551 5 of of IN cord-000248-zueoyesj 551 6 the the DT cord-000248-zueoyesj 551 7 TNF TNF NNP cord-000248-zueoyesj 551 8 receptor receptor NN cord-000248-zueoyesj 551 9 superfamily superfamily NN cord-000248-zueoyesj 551 10 . . . cord-000248-zueoyesj 552 1 Notably notably RB cord-000248-zueoyesj 552 2 , , , cord-000248-zueoyesj 552 3 in in IN cord-000248-zueoyesj 552 4 56 56 CD cord-000248-zueoyesj 552 5 out out IN cord-000248-zueoyesj 552 6 of of IN cord-000248-zueoyesj 552 7 57 57 CD cord-000248-zueoyesj 552 8 archival archival JJ cord-000248-zueoyesj 552 9 prostate prostate NN cord-000248-zueoyesj 552 10 cancer cancer NN cord-000248-zueoyesj 552 11 samples sample NNS cord-000248-zueoyesj 552 12 Palmer Palmer NNP cord-000248-zueoyesj 552 13 et et NNP cord-000248-zueoyesj 552 14 al al NNP cord-000248-zueoyesj 552 15 . . NNP cord-000248-zueoyesj 552 16 have have VBP cord-000248-zueoyesj 552 17 reported report VBN cord-000248-zueoyesj 552 18 no no DT cord-000248-zueoyesj 552 19 CD40 CD40 NNP cord-000248-zueoyesj 552 20 expression expression NN cord-000248-zueoyesj 552 21 [ [ -LRB- cord-000248-zueoyesj 552 22 518 518 CD cord-000248-zueoyesj 552 23 ] ] -RRB- cord-000248-zueoyesj 552 24 . . . cord-000248-zueoyesj 553 1 However however RB cord-000248-zueoyesj 553 2 , , , cord-000248-zueoyesj 553 3 CD40 cd40 JJ cord-000248-zueoyesj 553 4 expression expression NN cord-000248-zueoyesj 553 5 was be VBD cord-000248-zueoyesj 553 6 present present JJ cord-000248-zueoyesj 553 7 in in IN cord-000248-zueoyesj 553 8 normal normal JJ cord-000248-zueoyesj 553 9 prostatic prostatic JJ cord-000248-zueoyesj 553 10 acini acinus NNS cord-000248-zueoyesj 553 11 , , , cord-000248-zueoyesj 553 12 so so RB cord-000248-zueoyesj 553 13 they -PRON- PRP cord-000248-zueoyesj 553 14 proposed propose VBD cord-000248-zueoyesj 553 15 that that IN cord-000248-zueoyesj 553 16 ' ' `` cord-000248-zueoyesj 553 17 ' ' `` cord-000248-zueoyesj 553 18 invasive invasive JJ cord-000248-zueoyesj 553 19 prostate prostate NN cord-000248-zueoyesj 553 20 cancer cancer NN cord-000248-zueoyesj 553 21 is be VBZ cord-000248-zueoyesj 553 22 a a DT cord-000248-zueoyesj 553 23 CD40-negative CD40-negative NNP cord-000248-zueoyesj 553 24 tumour tumour NN cord-000248-zueoyesj 553 25 ' ' '' cord-000248-zueoyesj 553 26 ' ' '' cord-000248-zueoyesj 554 1 ( ( -LRB- cord-000248-zueoyesj 554 2 see see VB cord-000248-zueoyesj 554 3 the the DT cord-000248-zueoyesj 554 4 previous previous JJ cord-000248-zueoyesj 554 5 results result NNS cord-000248-zueoyesj 554 6 of of IN cord-000248-zueoyesj 554 7 Moghaddami Moghaddami NNP cord-000248-zueoyesj 554 8 et et NNP cord-000248-zueoyesj 554 9 . . . cord-000248-zueoyesj 555 1 al al NNP cord-000248-zueoyesj 555 2 . . . cord-000248-zueoyesj 556 1 [ [ -LRB- cord-000248-zueoyesj 556 2 514 514 CD cord-000248-zueoyesj 556 3 ] ] -RRB- cord-000248-zueoyesj 556 4 ) ) -RRB- cord-000248-zueoyesj 556 5 . . . cord-000248-zueoyesj 557 1 Matching match VBG cord-000248-zueoyesj 557 2 our -PRON- PRP$ cord-000248-zueoyesj 557 3 observations observation NNS cord-000248-zueoyesj 557 4 , , , cord-000248-zueoyesj 557 5 they -PRON- PRP cord-000248-zueoyesj 557 6 proposed propose VBD cord-000248-zueoyesj 557 7 that that IN cord-000248-zueoyesj 557 8 CD40 CD40 NNP cord-000248-zueoyesj 557 9 provides provide VBZ cord-000248-zueoyesj 557 10 ' ' `` cord-000248-zueoyesj 557 11 ' ' `` cord-000248-zueoyesj 557 12 insight insight NN cord-000248-zueoyesj 557 13 into into IN cord-000248-zueoyesj 557 14 progression progression NN cord-000248-zueoyesj 557 15 of of IN cord-000248-zueoyesj 557 16 cancer cancer NN cord-000248-zueoyesj 557 17 from from IN cord-000248-zueoyesj 557 18 normal normal JJ cord-000248-zueoyesj 557 19 epithelium epithelium NN cord-000248-zueoyesj 557 20 ' ' '' cord-000248-zueoyesj 557 21 ' ' '' cord-000248-zueoyesj 557 22 ; ; : cord-000248-zueoyesj 557 23 our -PRON- PRP$ cord-000248-zueoyesj 557 24 proposed propose VBN cord-000248-zueoyesj 557 25 methodology methodology NN cord-000248-zueoyesj 557 26 is be VBZ cord-000248-zueoyesj 557 27 revealing reveal VBG cord-000248-zueoyesj 557 28 this this DT cord-000248-zueoyesj 557 29 fact fact NN cord-000248-zueoyesj 557 30 as as RB cord-000248-zueoyesj 557 31 well well RB cord-000248-zueoyesj 557 32 . . . cord-000248-zueoyesj 558 1 Depletion depletion NN cord-000248-zueoyesj 558 2 of of IN cord-000248-zueoyesj 558 3 CD40 CD40 NNP cord-000248-zueoyesj 558 4 in in IN cord-000248-zueoyesj 558 5 the the DT cord-000248-zueoyesj 558 6 tumour tumour NN cord-000248-zueoyesj 558 7 microenvironment microenvironment NN cord-000248-zueoyesj 558 8 may may MD cord-000248-zueoyesj 558 9 be be VB cord-000248-zueoyesj 558 10 central central JJ cord-000248-zueoyesj 558 11 in in IN cord-000248-zueoyesj 558 12 avoiding avoid VBG cord-000248-zueoyesj 558 13 the the DT cord-000248-zueoyesj 558 14 action action NN cord-000248-zueoyesj 558 15 of of IN cord-000248-zueoyesj 558 16 the the DT cord-000248-zueoyesj 558 17 immune immune JJ cord-000248-zueoyesj 558 18 system system NN cord-000248-zueoyesj 558 19 [ [ -LRB- cord-000248-zueoyesj 558 20 506 506 CD cord-000248-zueoyesj 558 21 ] ] -RRB- cord-000248-zueoyesj 558 22 , , , cord-000248-zueoyesj 558 23 as as IN cord-000248-zueoyesj 558 24 prostate prostate NN cord-000248-zueoyesj 558 25 cancer cancer NN cord-000248-zueoyesj 558 26 induces induce VBZ cord-000248-zueoyesj 558 27 a a DT cord-000248-zueoyesj 558 28 progressive progressive JJ cord-000248-zueoyesj 558 29 suppression suppression NN cord-000248-zueoyesj 558 30 of of IN cord-000248-zueoyesj 558 31 the the DT cord-000248-zueoyesj 558 32 dendritic dendritic JJ cord-000248-zueoyesj 558 33 cell cell NN cord-000248-zueoyesj 558 34 system system NN cord-000248-zueoyesj 558 35 [ [ -LRB- cord-000248-zueoyesj 558 36 520 520 CD cord-000248-zueoyesj 558 37 ] ] -RRB- cord-000248-zueoyesj 558 38 . . . cord-000248-zueoyesj 559 1 It -PRON- PRP cord-000248-zueoyesj 559 2 is be VBZ cord-000248-zueoyesj 559 3 perhaps perhaps RB cord-000248-zueoyesj 559 4 a a DT cord-000248-zueoyesj 559 5 central central JJ cord-000248-zueoyesj 559 6 piece piece NN cord-000248-zueoyesj 559 7 which which WDT cord-000248-zueoyesj 559 8 should should MD cord-000248-zueoyesj 559 9 be be VB cord-000248-zueoyesj 559 10 put put VBN cord-000248-zueoyesj 559 11 together together RB cord-000248-zueoyesj 559 12 in in IN cord-000248-zueoyesj 559 13 the the DT cord-000248-zueoyesj 559 14 context context NN cord-000248-zueoyesj 559 15 of of IN cord-000248-zueoyesj 559 16 other other JJ cord-000248-zueoyesj 559 17 pieces piece NNS cord-000248-zueoyesj 559 18 of of IN cord-000248-zueoyesj 559 19 information information NN cord-000248-zueoyesj 559 20 coming come VBG cord-000248-zueoyesj 559 21 from from IN cord-000248-zueoyesj 559 22 immunotherapy immunotherapy NN cord-000248-zueoyesj 559 23 [ [ -LRB- cord-000248-zueoyesj 559 24 508 508 CD cord-000248-zueoyesj 559 25 , , , cord-000248-zueoyesj 559 26 512 512 CD cord-000248-zueoyesj 559 27 , , , cord-000248-zueoyesj 559 28 513 513 CD cord-000248-zueoyesj 559 29 , , , cord-000248-zueoyesj 559 30 516 516 CD cord-000248-zueoyesj 559 31 ] ] -RRB- cord-000248-zueoyesj 559 32 and and CC cord-000248-zueoyesj 559 33 pharmacological pharmacological JJ cord-000248-zueoyesj 559 34 studies study NNS cord-000248-zueoyesj 559 35 [ [ -LRB- cord-000248-zueoyesj 559 36 507 507 CD cord-000248-zueoyesj 559 37 ] ] -RRB- cord-000248-zueoyesj 559 38 that that WDT cord-000248-zueoyesj 559 39 warrant warrant VBP cord-000248-zueoyesj 559 40 serious serious JJ cord-000248-zueoyesj 559 41 investigation investigation NN cord-000248-zueoyesj 559 42 towards towards IN cord-000248-zueoyesj 559 43 the the DT cord-000248-zueoyesj 559 44 design design NN cord-000248-zueoyesj 559 45 of of IN cord-000248-zueoyesj 559 46 new new JJ cord-000248-zueoyesj 559 47 and and CC cord-000248-zueoyesj 559 48 improved improved JJ cord-000248-zueoyesj 559 49 clinical clinical JJ cord-000248-zueoyesj 559 50 studies study NNS cord-000248-zueoyesj 559 51 [ [ -LRB- cord-000248-zueoyesj 559 52 508 508 CD cord-000248-zueoyesj 559 53 , , , cord-000248-zueoyesj 559 54 517 517 CD cord-000248-zueoyesj 559 55 ] ] -RRB- cord-000248-zueoyesj 559 56 . . . cord-000248-zueoyesj 560 1 CD59 CD59 NNP cord-000248-zueoyesj 560 2 molecule molecule NN cord-000248-zueoyesj 560 3 , , , cord-000248-zueoyesj 560 4 complement complement VB cord-000248-zueoyesj 560 5 regulatory regulatory JJ cord-000248-zueoyesj 560 6 protein protein NN cord-000248-zueoyesj 560 7 . . . cord-000248-zueoyesj 561 1 Four four CD cord-000248-zueoyesj 561 2 probes probe NNS cord-000248-zueoyesj 561 3 for for IN cord-000248-zueoyesj 561 4 protectin protectin NNP cord-000248-zueoyesj 561 5 [ [ -LRB- cord-000248-zueoyesj 561 6 335 335 CD cord-000248-zueoyesj 561 7 , , , cord-000248-zueoyesj 561 8 523 523 CD cord-000248-zueoyesj 561 9 , , , cord-000248-zueoyesj 561 10 524 524 CD cord-000248-zueoyesj 561 11 ] ] -RRB- cord-000248-zueoyesj 561 12 , , , cord-000248-zueoyesj 561 13 CD59 CD59 NNP cord-000248-zueoyesj 561 14 , , , cord-000248-zueoyesj 561 15 with with IN cord-000248-zueoyesj 561 16 Spearman Spearman NNP cord-000248-zueoyesj 561 17 correlations correlation NNS cord-000248-zueoyesj 561 18 with with IN cord-000248-zueoyesj 561 19 the the DT cord-000248-zueoyesj 561 20 Jensen Jensen NNP cord-000248-zueoyesj 561 21 - - HYPH cord-000248-zueoyesj 561 22 Shannon Shannon NNP cord-000248-zueoyesj 561 23 divergence divergence NN cord-000248-zueoyesj 561 24 from from IN cord-000248-zueoyesj 561 25 the the DT cord-000248-zueoyesj 561 26 equiprobable equiprobable JJ cord-000248-zueoyesj 561 27 distribution distribution NN cord-000248-zueoyesj 561 28 , , , cord-000248-zueoyesj 561 29 ranging range VBG cord-000248-zueoyesj 561 30 from from IN cord-000248-zueoyesj 561 31 20.61823 20.61823 CD cord-000248-zueoyesj 561 32 to to IN cord-000248-zueoyesj 561 33 20.5089 20.5089 CD cord-000248-zueoyesj 561 34 , , , cord-000248-zueoyesj 561 35 rank rank VBP cord-000248-zueoyesj 561 36 between between IN cord-000248-zueoyesj 561 37 the the DT cord-000248-zueoyesj 561 38 1 1 CD cord-000248-zueoyesj 561 39 st st NNP cord-000248-zueoyesj 561 40 and and CC cord-000248-zueoyesj 561 41 39 39 CD cord-000248-zueoyesj 561 42 th th XX cord-000248-zueoyesj 561 43 position position NN cord-000248-zueoyesj 561 44 ( ( -LRB- cord-000248-zueoyesj 561 45 when when WRB cord-000248-zueoyesj 561 46 we -PRON- PRP cord-000248-zueoyesj 561 47 rank rank VBP cord-000248-zueoyesj 561 48 genes gene NNS cord-000248-zueoyesj 561 49 according accord VBG cord-000248-zueoyesj 561 50 to to IN cord-000248-zueoyesj 561 51 this this DT cord-000248-zueoyesj 561 52 correlation correlation NN cord-000248-zueoyesj 561 53 in in IN cord-000248-zueoyesj 561 54 ascending ascend VBG cord-000248-zueoyesj 561 55 order order NN cord-000248-zueoyesj 561 56 ) ) -RRB- cord-000248-zueoyesj 561 57 . . . cord-000248-zueoyesj 562 1 CD59 CD59 NNP cord-000248-zueoyesj 562 2 is be VBZ cord-000248-zueoyesj 562 3 an an DT cord-000248-zueoyesj 562 4 interesting interesting JJ cord-000248-zueoyesj 562 5 gene gene NN cord-000248-zueoyesj 562 6 as as IN cord-000248-zueoyesj 562 7 ' ' '' cord-000248-zueoyesj 562 8 ' ' '' cord-000248-zueoyesj 562 9 a a DT cord-000248-zueoyesj 562 10 comprehensive comprehensive JJ cord-000248-zueoyesj 562 11 investigation investigation NN cord-000248-zueoyesj 562 12 of of IN cord-000248-zueoyesj 562 13 CD59 CD59 NNP cord-000248-zueoyesj 562 14 expression expression NN cord-000248-zueoyesj 562 15 in in IN cord-000248-zueoyesj 562 16 prostate prostate NN cord-000248-zueoyesj 562 17 cancer cancer NN cord-000248-zueoyesj 562 18 has have VBZ cord-000248-zueoyesj 562 19 not not RB cord-000248-zueoyesj 562 20 been be VBN cord-000248-zueoyesj 562 21 conducted conduct VBN cord-000248-zueoyesj 562 22 yet yet RB cord-000248-zueoyesj 562 23 ' ' '' cord-000248-zueoyesj 562 24 ' ' '' cord-000248-zueoyesj 562 25 [ [ -LRB- cord-000248-zueoyesj 562 26 524 524 CD cord-000248-zueoyesj 562 27 ] ] -RRB- cord-000248-zueoyesj 562 28 . . . cord-000248-zueoyesj 563 1 Like like IN cord-000248-zueoyesj 563 2 LMNA LMNA NNP cord-000248-zueoyesj 563 3 ( ( -LRB- cord-000248-zueoyesj 563 4 which which WDT cord-000248-zueoyesj 563 5 is be VBZ cord-000248-zueoyesj 563 6 ranked rank VBN cord-000248-zueoyesj 563 7 third third RB cord-000248-zueoyesj 563 8 and and CC cord-000248-zueoyesj 563 9 will will MD cord-000248-zueoyesj 563 10 be be VB cord-000248-zueoyesj 563 11 discussed discuss VBN cord-000248-zueoyesj 563 12 later later RB cord-000248-zueoyesj 563 13 ) ) -RRB- cord-000248-zueoyesj 564 1 the the DT cord-000248-zueoyesj 564 2 rank rank NN cord-000248-zueoyesj 564 3 of of IN cord-000248-zueoyesj 564 4 CD59/ CD59/ NNP cord-000248-zueoyesj 564 5 protectin protectin NNP cord-000248-zueoyesj 564 6 means mean VBZ cord-000248-zueoyesj 564 7 that that IN cord-000248-zueoyesj 564 8 these these DT cord-000248-zueoyesj 564 9 genes gene NNS cord-000248-zueoyesj 564 10 progressively progressively RB cord-000248-zueoyesj 564 11 loose loose JJ cord-000248-zueoyesj 564 12 expression expression NN cord-000248-zueoyesj 564 13 of of IN cord-000248-zueoyesj 564 14 these these DT cord-000248-zueoyesj 564 15 probes probe NNS cord-000248-zueoyesj 564 16 . . . cord-000248-zueoyesj 565 1 CD59 CD59 NNP cord-000248-zueoyesj 565 2 is be VBZ cord-000248-zueoyesj 565 3 expressed express VBN cord-000248-zueoyesj 565 4 in in IN cord-000248-zueoyesj 565 5 the the DT cord-000248-zueoyesj 565 6 prostatic prostatic JJ cord-000248-zueoyesj 565 7 epithelium epithelium NN cord-000248-zueoyesj 565 8 [ [ -LRB- cord-000248-zueoyesj 565 9 525 525 CD cord-000248-zueoyesj 565 10 ] ] -RRB- cord-000248-zueoyesj 565 11 and and CC cord-000248-zueoyesj 565 12 in in IN cord-000248-zueoyesj 565 13 prostasomes prostasome NNS cord-000248-zueoyesj 565 14 [ [ -LRB- cord-000248-zueoyesj 565 15 526 526 CD cord-000248-zueoyesj 565 16 ] ] -RRB- cord-000248-zueoyesj 565 17 ; ; : cord-000248-zueoyesj 565 18 secretory secretory JJ cord-000248-zueoyesj 565 19 granules granule NNS cord-000248-zueoyesj 565 20 which which WDT cord-000248-zueoyesj 565 21 are be VBP cord-000248-zueoyesj 565 22 produced produce VBN cord-000248-zueoyesj 565 23 , , , cord-000248-zueoyesj 565 24 stored store VBN cord-000248-zueoyesj 565 25 and and CC cord-000248-zueoyesj 565 26 released release VBN cord-000248-zueoyesj 565 27 by by IN cord-000248-zueoyesj 565 28 the the DT cord-000248-zueoyesj 565 29 glandular glandular JJ cord-000248-zueoyesj 565 30 epithelial epithelial JJ cord-000248-zueoyesj 565 31 cells cell NNS cord-000248-zueoyesj 565 32 of of IN cord-000248-zueoyesj 565 33 the the DT cord-000248-zueoyesj 565 34 prostate prostate NN cord-000248-zueoyesj 565 35 [ [ -LRB- cord-000248-zueoyesj 565 36 527 527 CD cord-000248-zueoyesj 565 37 ] ] -RRB- cord-000248-zueoyesj 565 38 . . . cord-000248-zueoyesj 566 1 Babiker Babiker NNP cord-000248-zueoyesj 566 2 et et NNP cord-000248-zueoyesj 566 3 al al NNP cord-000248-zueoyesj 566 4 . . NNP cord-000248-zueoyesj 566 5 concluded conclude VBD cord-000248-zueoyesj 566 6 in in IN cord-000248-zueoyesj 566 7 [ [ -LRB- cord-000248-zueoyesj 566 8 335 335 CD cord-000248-zueoyesj 566 9 ] ] -RRB- cord-000248-zueoyesj 566 10 that that IN cord-000248-zueoyesj 566 11 prostasomes prostasome NNS cord-000248-zueoyesj 566 12 ( ( -LRB- cord-000248-zueoyesj 566 13 via via IN cord-000248-zueoyesj 566 14 expression expression NN cord-000248-zueoyesj 566 15 CD59 CD59 NNP cord-000248-zueoyesj 566 16 ) ) -RRB- cord-000248-zueoyesj 566 17 contribute contribute VB cord-000248-zueoyesj 566 18 to to IN cord-000248-zueoyesj 566 19 the the DT cord-000248-zueoyesj 566 20 protection protection NN cord-000248-zueoyesj 566 21 of of IN cord-000248-zueoyesj 566 22 malignant malignant JJ cord-000248-zueoyesj 566 23 cells cell NNS cord-000248-zueoyesj 566 24 from from IN cord-000248-zueoyesj 566 25 complement complement JJ cord-000248-zueoyesj 566 26 attack attack NN cord-000248-zueoyesj 566 27 . . . cord-000248-zueoyesj 567 1 We -PRON- PRP cord-000248-zueoyesj 567 2 now now RB cord-000248-zueoyesj 567 3 investigate investigate VBP cord-000248-zueoyesj 567 4 if if IN cord-000248-zueoyesj 567 5 the the DT cord-000248-zueoyesj 567 6 ratio ratio NN cord-000248-zueoyesj 567 7 of of IN cord-000248-zueoyesj 567 8 deltacatenin deltacatenin NN cord-000248-zueoyesj 567 9 to to IN cord-000248-zueoyesj 567 10 CD59 CD59 NNP cord-000248-zueoyesj 567 11 can can MD cord-000248-zueoyesj 567 12 is be VBZ cord-000248-zueoyesj 567 13 a a DT cord-000248-zueoyesj 567 14 more more RBR cord-000248-zueoyesj 567 15 robust robust JJ cord-000248-zueoyesj 567 16 biomarker biomarker NN cord-000248-zueoyesj 567 17 for for IN cord-000248-zueoyesj 567 18 non non JJ cord-000248-zueoyesj 567 19 - - JJ cord-000248-zueoyesj 567 20 invasive invasive JJ cord-000248-zueoyesj 567 21 prostate prostate NN cord-000248-zueoyesj 567 22 cancer cancer NN cord-000248-zueoyesj 567 23 detection detection NN cord-000248-zueoyesj 567 24 , , , cord-000248-zueoyesj 567 25 particularly particularly RB cord-000248-zueoyesj 567 26 after after IN cord-000248-zueoyesj 567 27 the the DT cord-000248-zueoyesj 567 28 results result NNS cord-000248-zueoyesj 567 29 presented present VBN cord-000248-zueoyesj 567 30 in in IN cord-000248-zueoyesj 567 31 [ [ -LRB- cord-000248-zueoyesj 567 32 528 528 CD cord-000248-zueoyesj 567 33 ] ] -RRB- cord-000248-zueoyesj 567 34 . . . cord-000248-zueoyesj 568 1 We -PRON- PRP cord-000248-zueoyesj 568 2 also also RB cord-000248-zueoyesj 568 3 note note VBP cord-000248-zueoyesj 568 4 that that IN cord-000248-zueoyesj 568 5 CD59 CD59 NNP cord-000248-zueoyesj 568 6 may may MD cord-000248-zueoyesj 568 7 be be VB cord-000248-zueoyesj 568 8 also also RB cord-000248-zueoyesj 568 9 relevant relevant JJ cord-000248-zueoyesj 568 10 to to TO cord-000248-zueoyesj 568 11 reveal reveal VB cord-000248-zueoyesj 568 12 the the DT cord-000248-zueoyesj 568 13 heterogeneous heterogeneous JJ cord-000248-zueoyesj 568 14 nature nature NN cord-000248-zueoyesj 568 15 of of IN cord-000248-zueoyesj 568 16 prostate prostate NN cord-000248-zueoyesj 568 17 cancer cancer NN cord-000248-zueoyesj 568 18 . . . cord-000248-zueoyesj 569 1 Its -PRON- PRP$ cord-000248-zueoyesj 569 2 correlation correlation NN cord-000248-zueoyesj 569 3 was be VBD cord-000248-zueoyesj 569 4 good good JJ cord-000248-zueoyesj 569 5 , , , cord-000248-zueoyesj 569 6 but but CC cord-000248-zueoyesj 569 7 is be VBZ cord-000248-zueoyesj 569 8 not not RB cord-000248-zueoyesj 569 9 lower low JJR cord-000248-zueoyesj 569 10 than than IN cord-000248-zueoyesj 569 11 20.62 20.62 CD cord-000248-zueoyesj 569 12 , , , cord-000248-zueoyesj 569 13 which which WDT cord-000248-zueoyesj 569 14 in in IN cord-000248-zueoyesj 569 15 our -PRON- PRP$ cord-000248-zueoyesj 569 16 experience experience NN cord-000248-zueoyesj 569 17 , , , cord-000248-zueoyesj 569 18 indicates indicate VBZ cord-000248-zueoyesj 569 19 that that IN cord-000248-zueoyesj 569 20 we -PRON- PRP cord-000248-zueoyesj 569 21 may may MD cord-000248-zueoyesj 569 22 be be VB cord-000248-zueoyesj 569 23 dealing deal VBG cord-000248-zueoyesj 569 24 with with IN cord-000248-zueoyesj 569 25 at at RB cord-000248-zueoyesj 569 26 least least RBS cord-000248-zueoyesj 569 27 two two CD cord-000248-zueoyesj 569 28 types type NNS cord-000248-zueoyesj 569 29 tumors tumor NNS cord-000248-zueoyesj 569 30 in in IN cord-000248-zueoyesj 569 31 this this DT cord-000248-zueoyesj 569 32 dataset dataset NN cord-000248-zueoyesj 569 33 . . . cord-000248-zueoyesj 570 1 Indeed indeed RB cord-000248-zueoyesj 570 2 , , , cord-000248-zueoyesj 570 3 Xu Xu NNP cord-000248-zueoyesj 570 4 et et NNP cord-000248-zueoyesj 570 5 al al NNP cord-000248-zueoyesj 570 6 . . . cord-000248-zueoyesj 571 1 obtained obtain VBN cord-000248-zueoyesj 572 1 CD59 CD59 NNP cord-000248-zueoyesj 572 2 mRNA mRNA NNP cord-000248-zueoyesj 572 3 levels level NNS cord-000248-zueoyesj 572 4 were be VBD cord-000248-zueoyesj 572 5 determined determine VBN cord-000248-zueoyesj 572 6 by by IN cord-000248-zueoyesj 572 7 real real JJ cord-000248-zueoyesj 572 8 - - HYPH cord-000248-zueoyesj 572 9 time time NN cord-000248-zueoyesj 572 10 PCR PCR NNP cord-000248-zueoyesj 572 11 in in IN cord-000248-zueoyesj 572 12 matched match VBN cord-000248-zueoyesj 572 13 ( ( -LRB- cord-000248-zueoyesj 572 14 tumor tumor NN cord-000248-zueoyesj 572 15 / / SYM cord-000248-zueoyesj 572 16 normal normal JJ cord-000248-zueoyesj 572 17 ) ) -RRB- cord-000248-zueoyesj 572 18 microdissected microdissected JJ cord-000248-zueoyesj 572 19 tissues tissue NNS cord-000248-zueoyesj 572 20 from from IN cord-000248-zueoyesj 572 21 26 26 CD cord-000248-zueoyesj 572 22 cases case NNS cord-000248-zueoyesj 572 23 and and CC cord-000248-zueoyesj 572 24 they -PRON- PRP cord-000248-zueoyesj 572 25 found find VBD cord-000248-zueoyesj 572 26 that that DT cord-000248-zueoyesj 572 27 : : : cord-000248-zueoyesj 572 28 ' ' '' cord-000248-zueoyesj 572 29 ' ' '' cord-000248-zueoyesj 572 30 High high JJ cord-000248-zueoyesj 572 31 rates rate NNS cord-000248-zueoyesj 572 32 of of IN cord-000248-zueoyesj 572 33 CD59 CD59 NNP cord-000248-zueoyesj 572 34 expression expression NN cord-000248-zueoyesj 572 35 were be VBD cord-000248-zueoyesj 572 36 noted note VBN cord-000248-zueoyesj 572 37 in in IN cord-000248-zueoyesj 572 38 36 36 CD cord-000248-zueoyesj 572 39 % % NN cord-000248-zueoyesj 572 40 of of IN cord-000248-zueoyesj 572 41 prostate prostate NN cord-000248-zueoyesj 572 42 cancer cancer NN cord-000248-zueoyesj 572 43 cases case NNS cord-000248-zueoyesj 572 44 and and CC cord-000248-zueoyesj 572 45 were be VBD cord-000248-zueoyesj 572 46 significantly significantly RB cord-000248-zueoyesj 572 47 associated associate VBN cord-000248-zueoyesj 572 48 with with IN cord-000248-zueoyesj 572 49 tumor tumor NN cord-000248-zueoyesj 572 50 pT pt JJ cord-000248-zueoyesj 572 51 stage stage NN cord-000248-zueoyesj 573 1 ( ( -LRB- cord-000248-zueoyesj 573 2 P p NN cord-000248-zueoyesj 573 3 = = SYM cord-000248-zueoyesj 573 4 0.043 0.043 CD cord-000248-zueoyesj 573 5 ) ) -RRB- cord-000248-zueoyesj 573 6 , , , cord-000248-zueoyesj 573 7 Gleason Gleason NNP cord-000248-zueoyesj 573 8 grade grade NN cord-000248-zueoyesj 573 9 ( ( -LRB- cord-000248-zueoyesj 573 10 P p NN cord-000248-zueoyesj 573 11 = = SYM cord-000248-zueoyesj 573 12 0.013 0.013 CD cord-000248-zueoyesj 573 13 ) ) -RRB- cord-000248-zueoyesj 573 14 and and CC cord-000248-zueoyesj 573 15 earlier early JJR cord-000248-zueoyesj 573 16 biochemical biochemical JJ cord-000248-zueoyesj 573 17 ( ( -LRB- cord-000248-zueoyesj 573 18 PSA PSA NNP cord-000248-zueoyesj 573 19 ) ) -RRB- cord-000248-zueoyesj 573 20 relapse relapse NN cord-000248-zueoyesj 573 21 in in IN cord-000248-zueoyesj 573 22 Kaplan Kaplan NNP cord-000248-zueoyesj 573 23 - - HYPH cord-000248-zueoyesj 573 24 Meier Meier NNP cord-000248-zueoyesj 573 25 analysis analysis NN cord-000248-zueoyesj 574 1 ( ( -LRB- cord-000248-zueoyesj 574 2 P p NN cord-000248-zueoyesj 574 3 = = SYM cord-000248-zueoyesj 574 4 0.0013 0.0013 CD cord-000248-zueoyesj 574 5 ) ) -RRB- cord-000248-zueoyesj 574 6 . . . cord-000248-zueoyesj 575 1 On on IN cord-000248-zueoyesj 575 2 RNA RNA NNP cord-000248-zueoyesj 575 3 level level NN cord-000248-zueoyesj 575 4 , , , cord-000248-zueoyesj 575 5 we -PRON- PRP cord-000248-zueoyesj 575 6 found find VBD cord-000248-zueoyesj 575 7 an an DT cord-000248-zueoyesj 575 8 upregulation upregulation NN cord-000248-zueoyesj 575 9 in in IN cord-000248-zueoyesj 575 10 19.2 19.2 CD cord-000248-zueoyesj 575 11 % % NN cord-000248-zueoyesj 575 12 ( ( -LRB- cord-000248-zueoyesj 575 13 five five CD cord-000248-zueoyesj 575 14 cases case NNS cord-000248-zueoyesj 575 15 ) ) -RRB- cord-000248-zueoyesj 575 16 , , , cord-000248-zueoyesj 575 17 although although IN cord-000248-zueoyesj 575 18 the the DT cord-000248-zueoyesj 575 19 general general JJ cord-000248-zueoyesj 575 20 rate rate NN cord-000248-zueoyesj 575 21 of of IN cord-000248-zueoyesj 575 22 CD59 CD59 NNP cord-000248-zueoyesj 575 23 transcript transcript NN cord-000248-zueoyesj 575 24 was be VBD cord-000248-zueoyesj 575 25 significantly significantly RB cord-000248-zueoyesj 575 26 lower low JJR cord-000248-zueoyesj 575 27 in in IN cord-000248-zueoyesj 575 28 tumor tumor NN cord-000248-zueoyesj 575 29 tissue tissue NN cord-000248-zueoyesj 575 30 ( ( -LRB- cord-000248-zueoyesj 575 31 P p NN cord-000248-zueoyesj 575 32 = = SYM cord-000248-zueoyesj 575 33 0.03 0.03 CD cord-000248-zueoyesj 575 34 ) ) -RRB- cord-000248-zueoyesj 575 35 ' ' '' cord-000248-zueoyesj 575 36 ' ' '' cord-000248-zueoyesj 575 37 [ [ -LRB- cord-000248-zueoyesj 575 38 524 524 CD cord-000248-zueoyesj 575 39 ] ] -RRB- cord-000248-zueoyesj 575 40 . . . cord-000248-zueoyesj 576 1 They -PRON- PRP cord-000248-zueoyesj 576 2 concluded conclude VBD cord-000248-zueoyesj 576 3 that that DT cord-000248-zueoyesj 576 4 : : : cord-000248-zueoyesj 576 5 ' ' '' cord-000248-zueoyesj 576 6 ' ' '' cord-000248-zueoyesj 576 7 CD59 CD59 NNP cord-000248-zueoyesj 576 8 protein protein NN cord-000248-zueoyesj 576 9 is be VBZ cord-000248-zueoyesj 576 10 strongly strongly RB cord-000248-zueoyesj 576 11 expressed express VBN cord-000248-zueoyesj 576 12 in in IN cord-000248-zueoyesj 576 13 36 36 CD cord-000248-zueoyesj 576 14 % % NN cord-000248-zueoyesj 576 15 of of IN cord-000248-zueoyesj 576 16 adenocarcinomas adenocarcinomas NNP cord-000248-zueoyesj 576 17 of of IN cord-000248-zueoyesj 576 18 the the DT cord-000248-zueoyesj 576 19 prostate prostate NN cord-000248-zueoyesj 576 20 and and CC cord-000248-zueoyesj 576 21 and and CC cord-000248-zueoyesj 576 22 is be VBZ cord-000248-zueoyesj 576 23 associated associate VBN cord-000248-zueoyesj 576 24 with with IN cord-000248-zueoyesj 576 25 disease disease NN cord-000248-zueoyesj 576 26 progression progression NN cord-000248-zueoyesj 576 27 and and CC cord-000248-zueoyesj 576 28 adverse adverse JJ cord-000248-zueoyesj 576 29 patient patient NN cord-000248-zueoyesj 576 30 prognosis prognosis NN cord-000248-zueoyesj 576 31 ' ' '' cord-000248-zueoyesj 576 32 ' ' '' cord-000248-zueoyesj 576 33 [ [ -LRB- cord-000248-zueoyesj 576 34 524 524 CD cord-000248-zueoyesj 576 35 ] ] -RRB- cord-000248-zueoyesj 576 36 . . . cord-000248-zueoyesj 577 1 Jarvis Jarvis NNP cord-000248-zueoyesj 577 2 et et NNP cord-000248-zueoyesj 577 3 al al NNP cord-000248-zueoyesj 577 4 . . NNP cord-000248-zueoyesj 577 5 have have VBP cord-000248-zueoyesj 577 6 previously previously RB cord-000248-zueoyesj 577 7 hypothesized hypothesize VBN cord-000248-zueoyesj 577 8 that that IN cord-000248-zueoyesj 577 9 CD59 CD59 NNP cord-000248-zueoyesj 577 10 expression expression NN cord-000248-zueoyesj 577 11 , , , cord-000248-zueoyesj 577 12 in in IN cord-000248-zueoyesj 577 13 some some DT cord-000248-zueoyesj 577 14 cancer cancer NN cord-000248-zueoyesj 577 15 cells cell NNS cord-000248-zueoyesj 577 16 , , , cord-000248-zueoyesj 577 17 may may MD cord-000248-zueoyesj 577 18 help help VB cord-000248-zueoyesj 577 19 to to TO cord-000248-zueoyesj 577 20 regulate regulate VB cord-000248-zueoyesj 577 21 the the DT cord-000248-zueoyesj 577 22 immunological immunological JJ cord-000248-zueoyesj 577 23 response response NN cord-000248-zueoyesj 577 24 , , , cord-000248-zueoyesj 577 25 protecting protect VBG cord-000248-zueoyesj 577 26 them -PRON- PRP cord-000248-zueoyesj 577 27 from from IN cord-000248-zueoyesj 577 28 the the DT cord-000248-zueoyesj 577 29 cytolytic cytolytic JJ cord-000248-zueoyesj 577 30 activity activity NN cord-000248-zueoyesj 577 31 of of IN cord-000248-zueoyesj 577 32 complement complement NN cord-000248-zueoyesj 577 33 [ [ -LRB- cord-000248-zueoyesj 577 34 523 523 CD cord-000248-zueoyesj 577 35 ] ] -RRB- cord-000248-zueoyesj 577 36 ( ( -LRB- cord-000248-zueoyesj 577 37 see see VB cord-000248-zueoyesj 577 38 also also RB cord-000248-zueoyesj 577 39 [ [ -LRB- cord-000248-zueoyesj 577 40 529 529 CD cord-000248-zueoyesj 577 41 , , , cord-000248-zueoyesj 577 42 530 530 CD cord-000248-zueoyesj 577 43 ] ] -RRB- cord-000248-zueoyesj 577 44 ) ) -RRB- cord-000248-zueoyesj 577 45 . . . cord-000248-zueoyesj 578 1 LMNA LMNA NNP cord-000248-zueoyesj 579 1 ( ( -LRB- cord-000248-zueoyesj 579 2 Lamin Lamin NNP cord-000248-zueoyesj 579 3 A A NNP cord-000248-zueoyesj 579 4 / / SYM cord-000248-zueoyesj 579 5 C C NNP cord-000248-zueoyesj 579 6 ) ) -RRB- cord-000248-zueoyesj 579 7 . . . cord-000248-zueoyesj 580 1 The the DT cord-000248-zueoyesj 580 2 third third JJ cord-000248-zueoyesj 580 3 probe probe NN cord-000248-zueoyesj 580 4 in in IN cord-000248-zueoyesj 580 5 the the DT cord-000248-zueoyesj 580 6 ranking ranking NN cord-000248-zueoyesj 580 7 corresponds correspond VBZ cord-000248-zueoyesj 580 8 to to IN cord-000248-zueoyesj 580 9 a a DT cord-000248-zueoyesj 580 10 LMNA LMNA NNP cord-000248-zueoyesj 581 1 ( ( -LRB- cord-000248-zueoyesj 581 2 Lamin Lamin NNP cord-000248-zueoyesj 581 3 A A NNP cord-000248-zueoyesj 581 4 / / SYM cord-000248-zueoyesj 581 5 C C NNP cord-000248-zueoyesj 581 6 ) ) -RRB- cord-000248-zueoyesj 581 7 , , , cord-000248-zueoyesj 581 8 AY528714 AY528714 NNP cord-000248-zueoyesj 581 9 . . . cord-000248-zueoyesj 582 1 Mutations mutation NNS cord-000248-zueoyesj 582 2 on on IN cord-000248-zueoyesj 582 3 LMNA LMNA NNP cord-000248-zueoyesj 582 4 have have VBP cord-000248-zueoyesj 582 5 been be VBN cord-000248-zueoyesj 582 6 linked link VBN cord-000248-zueoyesj 582 7 at at IN cord-000248-zueoyesj 582 8 10 10 CD cord-000248-zueoyesj 582 9 different different JJ cord-000248-zueoyesj 582 10 human human JJ cord-000248-zueoyesj 582 11 diseases disease NNS cord-000248-zueoyesj 582 12 [ [ -LRB- cord-000248-zueoyesj 582 13 531 531 CD cord-000248-zueoyesj 582 14 , , , cord-000248-zueoyesj 582 15 532 532 CD cord-000248-zueoyesj 582 16 ] ] -RRB- cord-000248-zueoyesj 582 17 . . . cord-000248-zueoyesj 583 1 LMNA LMNA NNP cord-000248-zueoyesj 583 2 , , , cord-000248-zueoyesj 583 3 due due IN cord-000248-zueoyesj 583 4 to to IN cord-000248-zueoyesj 583 5 its -PRON- PRP$ cord-000248-zueoyesj 583 6 functions function NNS cord-000248-zueoyesj 583 7 , , , cord-000248-zueoyesj 583 8 could could MD cord-000248-zueoyesj 583 9 be be VB cord-000248-zueoyesj 583 10 involved involve VBN cord-000248-zueoyesj 583 11 in in IN cord-000248-zueoyesj 583 12 important important JJ cord-000248-zueoyesj 583 13 cell cell NN cord-000248-zueoyesj 583 14 fate fate NN cord-000248-zueoyesj 583 15 decisions decision NNS cord-000248-zueoyesj 583 16 as as IN cord-000248-zueoyesj 583 17 lamins lamin NNS cord-000248-zueoyesj 583 18 are be VBP cord-000248-zueoyesj 583 19 involved involve VBN cord-000248-zueoyesj 583 20 in in IN cord-000248-zueoyesj 583 21 the the DT cord-000248-zueoyesj 583 22 organization organization NN cord-000248-zueoyesj 583 23 of of IN cord-000248-zueoyesj 583 24 the the DT cord-000248-zueoyesj 583 25 functional functional JJ cord-000248-zueoyesj 583 26 state state NN cord-000248-zueoyesj 583 27 ( ( -LRB- cord-000248-zueoyesj 583 28 and and CC cord-000248-zueoyesj 583 29 position position NN cord-000248-zueoyesj 583 30 ) ) -RRB- cord-000248-zueoyesj 583 31 of of IN cord-000248-zueoyesj 583 32 interphase interphase NN cord-000248-zueoyesj 583 33 chromosome chromosome NN cord-000248-zueoyesj 583 34 [ [ -LRB- cord-000248-zueoyesj 583 35 531 531 CD cord-000248-zueoyesj 583 36 ] ] -RRB- cord-000248-zueoyesj 583 37 . . . cord-000248-zueoyesj 584 1 Lamins lamin NNS cord-000248-zueoyesj 584 2 are be VBP cord-000248-zueoyesj 584 3 ' ' `` cord-000248-zueoyesj 584 4 ' ' `` cord-000248-zueoyesj 584 5 scaffolders scaffolder NNS cord-000248-zueoyesj 584 6 ' ' '' cord-000248-zueoyesj 584 7 ' ' '' cord-000248-zueoyesj 584 8 for for IN cord-000248-zueoyesj 584 9 the the DT cord-000248-zueoyesj 584 10 function function NN cord-000248-zueoyesj 584 11 of of IN cord-000248-zueoyesj 584 12 nuclear nuclear JJ cord-000248-zueoyesj 584 13 processes process NNS cord-000248-zueoyesj 584 14 such such JJ cord-000248-zueoyesj 584 15 as as IN cord-000248-zueoyesj 584 16 chromatin chromatin NN cord-000248-zueoyesj 584 17 organization organization NN cord-000248-zueoyesj 584 18 , , , cord-000248-zueoyesj 584 19 DNA dna NN cord-000248-zueoyesj 584 20 replication replication NN cord-000248-zueoyesj 584 21 , , , cord-000248-zueoyesj 584 22 cellular cellular JJ cord-000248-zueoyesj 584 23 integrity integrity NN cord-000248-zueoyesj 584 24 and and CC cord-000248-zueoyesj 584 25 transcription transcription NN cord-000248-zueoyesj 584 26 [ [ -LRB- cord-000248-zueoyesj 584 27 532 532 CD cord-000248-zueoyesj 584 28 ] ] -RRB- cord-000248-zueoyesj 584 29 . . . cord-000248-zueoyesj 585 1 As as IN cord-000248-zueoyesj 585 2 a a DT cord-000248-zueoyesj 585 3 consequence consequence NN cord-000248-zueoyesj 585 4 Lamins lamin NNS cord-000248-zueoyesj 585 5 are be VBP cord-000248-zueoyesj 585 6 involved involve VBN cord-000248-zueoyesj 585 7 in in IN cord-000248-zueoyesj 585 8 several several JJ cord-000248-zueoyesj 585 9 clinical clinical JJ cord-000248-zueoyesj 585 10 syndromes syndrome NNS cord-000248-zueoyesj 585 11 [ [ -LRB- cord-000248-zueoyesj 585 12 533 533 CD cord-000248-zueoyesj 585 13 , , , cord-000248-zueoyesj 585 14 534 534 CD cord-000248-zueoyesj 585 15 , , , cord-000248-zueoyesj 585 16 535 535 CD cord-000248-zueoyesj 585 17 ] ] -RRB- cord-000248-zueoyesj 585 18 . . . cord-000248-zueoyesj 586 1 Among among IN cord-000248-zueoyesj 586 2 the the DT cord-000248-zueoyesj 586 3 recent recent JJ cord-000248-zueoyesj 586 4 functions function NNS cord-000248-zueoyesj 586 5 attributed attribute VBN cord-000248-zueoyesj 586 6 to to IN cord-000248-zueoyesj 586 7 LMNA LMNA NNP cord-000248-zueoyesj 586 8 is be VBZ cord-000248-zueoyesj 586 9 as as IN cord-000248-zueoyesj 586 10 an an DT cord-000248-zueoyesj 586 11 intrinsic intrinsic JJ cord-000248-zueoyesj 586 12 modulator modulator NN cord-000248-zueoyesj 586 13 of of IN cord-000248-zueoyesj 586 14 ageing age VBG cord-000248-zueoyesj 586 15 within within IN cord-000248-zueoyesj 586 16 adult adult NN cord-000248-zueoyesj 586 17 stem stem NN cord-000248-zueoyesj 586 18 cells cell NNS cord-000248-zueoyesj 586 19 via via IN cord-000248-zueoyesj 586 20 a a DT cord-000248-zueoyesj 586 21 mechanism mechanism NN cord-000248-zueoyesj 586 22 where where WRB cord-000248-zueoyesj 586 23 LMNA LMNA NNP cord-000248-zueoyesj 586 24 act act NNP cord-000248-zueoyesj 586 25 as as IN cord-000248-zueoyesj 586 26 signalling signal VBG cord-000248-zueoyesj 586 27 receptors receptor NNS cord-000248-zueoyesj 586 28 in in IN cord-000248-zueoyesj 586 29 the the DT cord-000248-zueoyesj 586 30 nucleus nucleus NN cord-000248-zueoyesj 586 31 . . . cord-000248-zueoyesj 587 1 These these DT cord-000248-zueoyesj 587 2 observations observation NNS cord-000248-zueoyesj 587 3 correspond correspond VBP cord-000248-zueoyesj 587 4 to to IN cord-000248-zueoyesj 587 5 Pekovic Pekovic NNP cord-000248-zueoyesj 587 6 and and CC cord-000248-zueoyesj 587 7 Hutchinson Hutchinson NNP cord-000248-zueoyesj 587 8 who who WP cord-000248-zueoyesj 587 9 observed observe VBD cord-000248-zueoyesj 587 10 that that IN cord-000248-zueoyesj 587 11 dysfunction dysfunction NN cord-000248-zueoyesj 587 12 of of IN cord-000248-zueoyesj 587 13 LMNA LMNA NNP cord-000248-zueoyesj 587 14 leads lead VBZ cord-000248-zueoyesj 587 15 to to IN cord-000248-zueoyesj 587 16 inappropriate inappropriate JJ cord-000248-zueoyesj 587 17 activation activation NN cord-000248-zueoyesj 587 18 of of IN cord-000248-zueoyesj 587 19 self self NN cord-000248-zueoyesj 587 20 - - HYPH cord-000248-zueoyesj 587 21 renewal renewal NN cord-000248-zueoyesj 587 22 pathways pathway NNS cord-000248-zueoyesj 587 23 and and CC cord-000248-zueoyesj 587 24 initiation initiation NN cord-000248-zueoyesj 587 25 of of IN cord-000248-zueoyesj 587 26 stress stress NN cord-000248-zueoyesj 587 27 - - HYPH cord-000248-zueoyesj 587 28 induced induce VBN cord-000248-zueoyesj 587 29 senescense senescense NN cord-000248-zueoyesj 587 30 [ [ -LRB- cord-000248-zueoyesj 587 31 536 536 CD cord-000248-zueoyesj 587 32 ] ] -RRB- cord-000248-zueoyesj 587 33 . . . cord-000248-zueoyesj 588 1 In in IN cord-000248-zueoyesj 588 2 lmna lmna NN cord-000248-zueoyesj 588 3 - - HYPH cord-000248-zueoyesj 588 4 deficient deficient JJ cord-000248-zueoyesj 588 5 mouse mouse NN cord-000248-zueoyesj 588 6 embryonic embryonic JJ cord-000248-zueoyesj 588 7 fibroblasts fibroblast NNS cord-000248-zueoyesj 588 8 ( ( -LRB- cord-000248-zueoyesj 588 9 lmna(2/2 lmna(2/2 VBN cord-000248-zueoyesj 588 10 ) ) -RRB- cord-000248-zueoyesj 588 11 MEFs MEFs NNP cord-000248-zueoyesj 588 12 ) ) -RRB- cord-000248-zueoyesj 588 13 , , , cord-000248-zueoyesj 588 14 the the DT cord-000248-zueoyesj 588 15 loss loss NN cord-000248-zueoyesj 588 16 of of IN cord-000248-zueoyesj 588 17 lmna''dramatically lmna''dramatically RB cord-000248-zueoyesj 588 18 affects affect VBZ cord-000248-zueoyesj 588 19 the the DT cord-000248-zueoyesj 588 20 micromechanical micromechanical JJ cord-000248-zueoyesj 588 21 properties property NNS cord-000248-zueoyesj 588 22 of of IN cord-000248-zueoyesj 588 23 the the DT cord-000248-zueoyesj 588 24 cytoplasm cytoplasm NN cord-000248-zueoyesj 588 25 ' ' '' cord-000248-zueoyesj 588 26 ' ' '' cord-000248-zueoyesj 588 27 , , , cord-000248-zueoyesj 588 28 since since IN cord-000248-zueoyesj 588 29 ' ' '' cord-000248-zueoyesj 588 30 ' ' '' cord-000248-zueoyesj 588 31 Both both CC cord-000248-zueoyesj 588 32 the the DT cord-000248-zueoyesj 588 33 elasticity elasticity NN cord-000248-zueoyesj 588 34 ( ( -LRB- cord-000248-zueoyesj 588 35 stretchiness stretchiness NN cord-000248-zueoyesj 588 36 ) ) -RRB- cord-000248-zueoyesj 588 37 and and CC cord-000248-zueoyesj 588 38 the the DT cord-000248-zueoyesj 588 39 viscosity viscosity NN cord-000248-zueoyesj 588 40 ( ( -LRB- cord-000248-zueoyesj 588 41 propensity propensity NN cord-000248-zueoyesj 588 42 of of IN cord-000248-zueoyesj 588 43 a a DT cord-000248-zueoyesj 588 44 material material NN cord-000248-zueoyesj 588 45 to to TO cord-000248-zueoyesj 588 46 flow flow VB cord-000248-zueoyesj 588 47 ) ) -RRB- cord-000248-zueoyesj 588 48 of of IN cord-000248-zueoyesj 588 49 the the DT cord-000248-zueoyesj 588 50 cytoplasm cytoplasm NN cord-000248-zueoyesj 588 51 in in IN cord-000248-zueoyesj 588 52 Lmna(2/2 Lmna(2/2 NNP cord-000248-zueoyesj 588 53 ) ) -RRB- cord-000248-zueoyesj 588 54 MEFs mef NNS cord-000248-zueoyesj 588 55 are be VBP cord-000248-zueoyesj 588 56 significantly significantly RB cord-000248-zueoyesj 588 57 reduced reduce VBN cord-000248-zueoyesj 588 58 ' ' '' cord-000248-zueoyesj 588 59 ' ' '' cord-000248-zueoyesj 588 60 [ [ -LRB- cord-000248-zueoyesj 588 61 537 537 CD cord-000248-zueoyesj 588 62 ] ] -RRB- cord-000248-zueoyesj 588 63 . . . cord-000248-zueoyesj 589 1 Using use VBG cord-000248-zueoyesj 589 2 ballistic ballistic JJ cord-000248-zueoyesj 589 3 intracellular intracellular JJ cord-000248-zueoyesj 589 4 nanorheology nanorheology NN cord-000248-zueoyesj 589 5 to to TO cord-000248-zueoyesj 589 6 evaluate evaluate VB cord-000248-zueoyesj 589 7 the the DT cord-000248-zueoyesj 589 8 micromechanical micromechanical JJ cord-000248-zueoyesj 589 9 properties property NNS cord-000248-zueoyesj 589 10 of of IN cord-000248-zueoyesj 589 11 the the DT cord-000248-zueoyesj 589 12 cytoplasm cytoplasm NN cord-000248-zueoyesj 589 13 of of IN cord-000248-zueoyesj 589 14 these these DT cord-000248-zueoyesj 589 15 cells cell NNS cord-000248-zueoyesj 589 16 , , , cord-000248-zueoyesj 589 17 Lee Lee NNP cord-000248-zueoyesj 589 18 et et NNP cord-000248-zueoyesj 589 19 al al NNP cord-000248-zueoyesj 589 20 . . . cord-000248-zueoyesj 590 1 conclude conclude VB cord-000248-zueoyesj 590 2 : : : cord-000248-zueoyesj 590 3 '' '' '' cord-000248-zueoyesj 591 1 Together together RB cord-000248-zueoyesj 591 2 these these DT cord-000248-zueoyesj 591 3 results result NNS cord-000248-zueoyesj 591 4 show show VBP cord-000248-zueoyesj 591 5 that that IN cord-000248-zueoyesj 591 6 both both CC cord-000248-zueoyesj 591 7 the the DT cord-000248-zueoyesj 591 8 mechanical mechanical JJ cord-000248-zueoyesj 591 9 properties property NNS cord-000248-zueoyesj 591 10 of of IN cord-000248-zueoyesj 591 11 the the DT cord-000248-zueoyesj 591 12 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 591 13 and and CC cord-000248-zueoyesj 591 14 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 591 15 - - HYPH cord-000248-zueoyesj 591 16 based base VBN cord-000248-zueoyesj 591 17 processes process NNS cord-000248-zueoyesj 591 18 , , , cord-000248-zueoyesj 591 19 including include VBG cord-000248-zueoyesj 591 20 cell cell NN cord-000248-zueoyesj 591 21 motility motility NN cord-000248-zueoyesj 591 22 , , , cord-000248-zueoyesj 591 23 coupled couple VBN cord-000248-zueoyesj 591 24 MTOC MTOC NNP cord-000248-zueoyesj 591 25 and and CC cord-000248-zueoyesj 591 26 nucleus nucleus NN cord-000248-zueoyesj 591 27 dynamics dynamic NNS cord-000248-zueoyesj 591 28 , , , cord-000248-zueoyesj 591 29 and and CC cord-000248-zueoyesj 591 30 cell cell NN cord-000248-zueoyesj 591 31 polarization polarization NN cord-000248-zueoyesj 591 32 , , , cord-000248-zueoyesj 591 33 depend depend VB cord-000248-zueoyesj 591 34 critically critically RB cord-000248-zueoyesj 591 35 on on IN cord-000248-zueoyesj 591 36 the the DT cord-000248-zueoyesj 591 37 integrity integrity NN cord-000248-zueoyesj 591 38 of of IN cord-000248-zueoyesj 591 39 the the DT cord-000248-zueoyesj 591 40 nuclear nuclear JJ cord-000248-zueoyesj 591 41 lamina lamina NN cord-000248-zueoyesj 591 42 , , , cord-000248-zueoyesj 591 43 which which WDT cord-000248-zueoyesj 591 44 suggest suggest VBP cord-000248-zueoyesj 591 45 the the DT cord-000248-zueoyesj 591 46 existence existence NN cord-000248-zueoyesj 591 47 of of IN cord-000248-zueoyesj 591 48 a a DT cord-000248-zueoyesj 591 49 functional functional JJ cord-000248-zueoyesj 591 50 mechanical mechanical JJ cord-000248-zueoyesj 591 51 connection connection NN cord-000248-zueoyesj 591 52 between between IN cord-000248-zueoyesj 591 53 the the DT cord-000248-zueoyesj 591 54 nucleus nucleus NN cord-000248-zueoyesj 591 55 and and CC cord-000248-zueoyesj 591 56 the the DT cord-000248-zueoyesj 591 57 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 591 58 . . . cord-000248-zueoyesj 592 1 These these DT cord-000248-zueoyesj 592 2 results result NNS cord-000248-zueoyesj 592 3 also also RB cord-000248-zueoyesj 592 4 suggest suggest VBP cord-000248-zueoyesj 592 5 that that IN cord-000248-zueoyesj 592 6 cell cell NN cord-000248-zueoyesj 592 7 polarization polarization NN cord-000248-zueoyesj 592 8 during during IN cord-000248-zueoyesj 592 9 cell cell NN cord-000248-zueoyesj 592 10 migration migration NN cord-000248-zueoyesj 592 11 requires require VBZ cord-000248-zueoyesj 592 12 tight tight JJ cord-000248-zueoyesj 592 13 mechanical mechanical JJ cord-000248-zueoyesj 592 14 coupling coupling NN cord-000248-zueoyesj 592 15 between between IN cord-000248-zueoyesj 592 16 MTOC MTOC NNP cord-000248-zueoyesj 592 17 and and CC cord-000248-zueoyesj 592 18 nucleus nucleus NN cord-000248-zueoyesj 592 19 , , , cord-000248-zueoyesj 592 20 which which WDT cord-000248-zueoyesj 592 21 is be VBZ cord-000248-zueoyesj 592 22 mediated mediate VBN cord-000248-zueoyesj 592 23 by by IN cord-000248-zueoyesj 592 24 lamin lamin NNP cord-000248-zueoyesj 592 25 A A NNP cord-000248-zueoyesj 592 26 / / SYM cord-000248-zueoyesj 592 27 C C NNP cord-000248-zueoyesj 592 28 ' ' '' cord-000248-zueoyesj 592 29 ' ' '' cord-000248-zueoyesj 592 30 [ [ -LRB- cord-000248-zueoyesj 592 31 537 537 CD cord-000248-zueoyesj 592 32 ] ] -RRB- cord-000248-zueoyesj 592 33 ( ( -LRB- cord-000248-zueoyesj 592 34 see see VB cord-000248-zueoyesj 592 35 also also RB cord-000248-zueoyesj 592 36 [ [ -LRB- cord-000248-zueoyesj 592 37 538 538 CD cord-000248-zueoyesj 592 38 , , , cord-000248-zueoyesj 592 39 539 539 CD cord-000248-zueoyesj 592 40 ] ] -RRB- cord-000248-zueoyesj 592 41 ) ) -RRB- cord-000248-zueoyesj 592 42 . . . cord-000248-zueoyesj 593 1 In in IN cord-000248-zueoyesj 593 2 addition addition NN cord-000248-zueoyesj 593 3 to to IN cord-000248-zueoyesj 593 4 these these DT cord-000248-zueoyesj 593 5 very very RB cord-000248-zueoyesj 593 6 interesting interesting JJ cord-000248-zueoyesj 593 7 findings finding NNS cord-000248-zueoyesj 593 8 , , , cord-000248-zueoyesj 593 9 a a DT cord-000248-zueoyesj 593 10 functional functional JJ cord-000248-zueoyesj 593 11 association association NN cord-000248-zueoyesj 593 12 of of IN cord-000248-zueoyesj 593 13 LMNA LMNA NNP cord-000248-zueoyesj 593 14 and and CC cord-000248-zueoyesj 593 15 the the DT cord-000248-zueoyesj 593 16 retinoblastoma retinoblastoma NN cord-000248-zueoyesj 593 17 protein protein NN cord-000248-zueoyesj 593 18 ( ( -LRB- cord-000248-zueoyesj 593 19 pRB pRB NNP cord-000248-zueoyesj 593 20 ) ) -RRB- cord-000248-zueoyesj 593 21 exists exist VBZ cord-000248-zueoyesj 593 22 . . . cord-000248-zueoyesj 594 1 Nitta Nitta NNP cord-000248-zueoyesj 594 2 et et NNP cord-000248-zueoyesj 594 3 al al NNP cord-000248-zueoyesj 594 4 . . NNP cord-000248-zueoyesj 594 5 have have VBP cord-000248-zueoyesj 594 6 shown show VBN cord-000248-zueoyesj 594 7 that that IN cord-000248-zueoyesj 594 8 pRB prb NN cord-000248-zueoyesj 594 9 needs need VBZ cord-000248-zueoyesj 594 10 to to TO cord-000248-zueoyesj 594 11 be be VB cord-000248-zueoyesj 594 12 stabilized stabilize VBN cord-000248-zueoyesj 594 13 by by IN cord-000248-zueoyesj 594 14 LMNA LMNA NNP cord-000248-zueoyesj 594 15 for for IN cord-000248-zueoyesj 594 16 INK4A INK4A NNP cord-000248-zueoyesj 594 17 - - HYPH cord-000248-zueoyesj 594 18 mediated mediate VBN cord-000248-zueoyesj 594 19 cell cell NN cord-000248-zueoyesj 594 20 cycle cycle NN cord-000248-zueoyesj 594 21 arrest arrest NN cord-000248-zueoyesj 594 22 and and CC cord-000248-zueoyesj 594 23 that that IN cord-000248-zueoyesj 594 24 somatic somatic JJ cord-000248-zueoyesj 594 25 mutations mutation NNS cord-000248-zueoyesj 594 26 in in IN cord-000248-zueoyesj 594 27 LMNA LMNA NNP cord-000248-zueoyesj 594 28 may may MD cord-000248-zueoyesj 594 29 also also RB cord-000248-zueoyesj 594 30 have have VB cord-000248-zueoyesj 594 31 a a DT cord-000248-zueoyesj 594 32 role role NN cord-000248-zueoyesj 594 33 in in IN cord-000248-zueoyesj 594 34 tumor tumor NN cord-000248-zueoyesj 594 35 progression progression NN cord-000248-zueoyesj 594 36 [ [ -LRB- cord-000248-zueoyesj 594 37 540 540 CD cord-000248-zueoyesj 594 38 ] ] -RRB- cord-000248-zueoyesj 594 39 . . . cord-000248-zueoyesj 595 1 In in IN cord-000248-zueoyesj 595 2 mammalian mammalian JJ cord-000248-zueoyesj 595 3 cells cell NNS cord-000248-zueoyesj 595 4 , , , cord-000248-zueoyesj 595 5 LMNA LMNA NNP cord-000248-zueoyesj 595 6 a a LS cord-000248-zueoyesj 595 7 ) ) -RRB- cord-000248-zueoyesj 595 8 colocalizes colocalizes NNP cord-000248-zueoyesj 595 9 with with IN cord-000248-zueoyesj 595 10 c c NNP cord-000248-zueoyesj 595 11 - - HYPH cord-000248-zueoyesj 595 12 FOS FOS NNP cord-000248-zueoyesj 595 13 at at IN cord-000248-zueoyesj 595 14 the the DT cord-000248-zueoyesj 595 15 nuclear nuclear JJ cord-000248-zueoyesj 595 16 envelope envelope NN cord-000248-zueoyesj 595 17 , , , cord-000248-zueoyesj 595 18 b b LS cord-000248-zueoyesj 595 19 ) ) -RRB- cord-000248-zueoyesj 595 20 suppresses suppress VBZ cord-000248-zueoyesj 595 21 AP-1 AP-1 NNP cord-000248-zueoyesj 595 22 through through IN cord-000248-zueoyesj 595 23 a a DT cord-000248-zueoyesj 595 24 direct direct JJ cord-000248-zueoyesj 595 25 interaction interaction NN cord-000248-zueoyesj 595 26 with with IN cord-000248-zueoyesj 595 27 c c NN cord-000248-zueoyesj 595 28 - - : cord-000248-zueoyesj 595 29 FOS FOS NNP cord-000248-zueoyesj 595 30 and and CC cord-000248-zueoyesj 595 31 , , , cord-000248-zueoyesj 595 32 in in IN cord-000248-zueoyesj 595 33 LMNA LMNA NNP cord-000248-zueoyesj 595 34 - - HYPH cord-000248-zueoyesj 595 35 null null NN cord-000248-zueoyesj 595 36 cells cell NNS cord-000248-zueoyesj 595 37 perinuclear perinuclear NNP cord-000248-zueoyesj 595 38 localization localization NN cord-000248-zueoyesj 595 39 of of IN cord-000248-zueoyesj 595 40 c c NNP cord-000248-zueoyesj 595 41 - - : cord-000248-zueoyesj 595 42 FOS FOS NNP cord-000248-zueoyesj 595 43 is be VBZ cord-000248-zueoyesj 595 44 absent absent JJ cord-000248-zueoyesj 596 1 ( ( -LRB- cord-000248-zueoyesj 596 2 but but CC cord-000248-zueoyesj 596 3 it -PRON- PRP cord-000248-zueoyesj 596 4 is be VBZ cord-000248-zueoyesj 596 5 restored restore VBN cord-000248-zueoyesj 596 6 when when WRB cord-000248-zueoyesj 596 7 it -PRON- PRP cord-000248-zueoyesj 596 8 is be VBZ cord-000248-zueoyesj 596 9 overexpressed overexpresse VBN cord-000248-zueoyesj 597 1 , , , cord-000248-zueoyesj 597 2 c c LS cord-000248-zueoyesj 597 3 ) ) -RRB- cord-000248-zueoyesj 597 4 LMNA LMNA NNP cord-000248-zueoyesj 597 5 - - HYPH cord-000248-zueoyesj 597 6 null null NN cord-000248-zueoyesj 597 7 cells cell NNS cord-000248-zueoyesj 597 8 have have VBP cord-000248-zueoyesj 597 9 enhanced enhance VBN cord-000248-zueoyesj 597 10 proliferation proliferation NN cord-000248-zueoyesj 597 11 [ [ -LRB- cord-000248-zueoyesj 597 12 74 74 CD cord-000248-zueoyesj 597 13 ] ] -RRB- cord-000248-zueoyesj 597 14 . . . cord-000248-zueoyesj 598 1 These these DT cord-000248-zueoyesj 598 2 results result NNS cord-000248-zueoyesj 598 3 obtained obtain VBN cord-000248-zueoyesj 598 4 by by IN cord-000248-zueoyesj 598 5 Ivorra Ivorra NNP cord-000248-zueoyesj 598 6 et et NNP cord-000248-zueoyesj 598 7 al al NNP cord-000248-zueoyesj 598 8 . . NNP cord-000248-zueoyesj 598 9 are be VBP cord-000248-zueoyesj 598 10 giving give VBG cord-000248-zueoyesj 598 11 the the DT cord-000248-zueoyesj 598 12 indication indication NN cord-000248-zueoyesj 598 13 that that IN cord-000248-zueoyesj 598 14 of of IN cord-000248-zueoyesj 598 15 yet yet RB cord-000248-zueoyesj 598 16 another another DT cord-000248-zueoyesj 598 17 mechanism mechanism NN cord-000248-zueoyesj 598 18 of of IN cord-000248-zueoyesj 598 19 cell cell NN cord-000248-zueoyesj 598 20 cycle cycle NN cord-000248-zueoyesj 598 21 and and CC cord-000248-zueoyesj 598 22 transcriptional transcriptional JJ cord-000248-zueoyesj 598 23 control control NN cord-000248-zueoyesj 598 24 mediated mediate VBN cord-000248-zueoyesj 598 25 by by IN cord-000248-zueoyesj 598 26 LMNA LMNA NNP cord-000248-zueoyesj 598 27 [ [ -LRB- cord-000248-zueoyesj 598 28 74 74 CD cord-000248-zueoyesj 598 29 ] ] -RRB- cord-000248-zueoyesj 598 30 ( ( -LRB- cord-000248-zueoyesj 598 31 see see VB cord-000248-zueoyesj 598 32 also also RB cord-000248-zueoyesj 598 33 [ [ -LRB- cord-000248-zueoyesj 598 34 541 541 CD cord-000248-zueoyesj 598 35 ] ] -RRB- cord-000248-zueoyesj 598 36 ) ) -RRB- cord-000248-zueoyesj 598 37 . . . cord-000248-zueoyesj 599 1 LMNA LMNA NNP cord-000248-zueoyesj 599 2 has have VBZ cord-000248-zueoyesj 599 3 also also RB cord-000248-zueoyesj 599 4 been be VBN cord-000248-zueoyesj 599 5 proposed propose VBN cord-000248-zueoyesj 599 6 as as IN cord-000248-zueoyesj 599 7 an an DT cord-000248-zueoyesj 599 8 inhibitor inhibitor NN cord-000248-zueoyesj 599 9 of of IN cord-000248-zueoyesj 599 10 adipocyte adipocyte JJ cord-000248-zueoyesj 599 11 differentiation differentiation NN cord-000248-zueoyesj 599 12 [ [ -LRB- cord-000248-zueoyesj 599 13 542 542 CD cord-000248-zueoyesj 599 14 ] ] -RRB- cord-000248-zueoyesj 599 15 . . . cord-000248-zueoyesj 600 1 Hutchingson Hutchingson NNP cord-000248-zueoyesj 600 2 et et NNP cord-000248-zueoyesj 600 3 al al NNP cord-000248-zueoyesj 600 4 . . NNP cord-000248-zueoyesj 600 5 have have VBP cord-000248-zueoyesj 600 6 proposed propose VBN cord-000248-zueoyesj 600 7 the the DT cord-000248-zueoyesj 600 8 alias alias NN cord-000248-zueoyesj 600 9 of of IN cord-000248-zueoyesj 600 10 ' ' `` cord-000248-zueoyesj 600 11 ' ' '' cord-000248-zueoyesj 600 12 guardian guardian NN cord-000248-zueoyesj 600 13 of of IN cord-000248-zueoyesj 600 14 the the DT cord-000248-zueoyesj 600 15 soma soma NNP cord-000248-zueoyesj 600 16 ' ' '' cord-000248-zueoyesj 600 17 ' ' '' cord-000248-zueoyesj 600 18 for for IN cord-000248-zueoyesj 600 19 lamins lamins NNPS cord-000248-zueoyesj 600 20 A A NNP cord-000248-zueoyesj 600 21 and and CC cord-000248-zueoyesj 600 22 C C NNP cord-000248-zueoyesj 600 23 as as IN cord-000248-zueoyesj 600 24 they -PRON- PRP cord-000248-zueoyesj 600 25 seem seem VBP cord-000248-zueoyesj 600 26 to to TO cord-000248-zueoyesj 600 27 have have VB cord-000248-zueoyesj 600 28 ' ' `` cord-000248-zueoyesj 600 29 ' ' `` cord-000248-zueoyesj 600 30 essential essential JJ cord-000248-zueoyesj 600 31 functions function NNS cord-000248-zueoyesj 600 32 in in IN cord-000248-zueoyesj 600 33 protecting protect VBG cord-000248-zueoyesj 600 34 cells cell NNS cord-000248-zueoyesj 600 35 from from IN cord-000248-zueoyesj 600 36 physical physical JJ cord-000248-zueoyesj 600 37 damage damage NN cord-000248-zueoyesj 600 38 , , , cord-000248-zueoyesj 600 39 as as RB cord-000248-zueoyesj 600 40 well well RB cord-000248-zueoyesj 600 41 as as IN cord-000248-zueoyesj 600 42 in in IN cord-000248-zueoyesj 600 43 maintaining maintain VBG cord-000248-zueoyesj 600 44 the the DT cord-000248-zueoyesj 600 45 function function NN cord-000248-zueoyesj 600 46 of of IN cord-000248-zueoyesj 600 47 transcription transcription NN cord-000248-zueoyesj 600 48 factors factor NNS cord-000248-zueoyesj 600 49 required require VBN cord-000248-zueoyesj 600 50 for for IN cord-000248-zueoyesj 600 51 the the DT cord-000248-zueoyesj 600 52 differentiation differentiation NN cord-000248-zueoyesj 600 53 of of IN cord-000248-zueoyesj 600 54 adult adult NN cord-000248-zueoyesj 600 55 stem stem NN cord-000248-zueoyesj 600 56 cells cell NNS cord-000248-zueoyesj 600 57 ' ' POS cord-000248-zueoyesj 600 58 ' ' '' cord-000248-zueoyesj 600 59 [ [ -LRB- cord-000248-zueoyesj 600 60 543 543 CD cord-000248-zueoyesj 600 61 ] ] -RRB- cord-000248-zueoyesj 600 62 . . . cord-000248-zueoyesj 601 1 From from IN cord-000248-zueoyesj 601 2 our -PRON- PRP$ cord-000248-zueoyesj 601 3 results result NNS cord-000248-zueoyesj 601 4 , , , cord-000248-zueoyesj 601 5 we -PRON- PRP cord-000248-zueoyesj 601 6 can can MD cord-000248-zueoyesj 601 7 not not RB cord-000248-zueoyesj 601 8 completely completely RB cord-000248-zueoyesj 601 9 establish establish VB cord-000248-zueoyesj 601 10 if if IN cord-000248-zueoyesj 601 11 the the DT cord-000248-zueoyesj 601 12 downregulation downregulation NN cord-000248-zueoyesj 601 13 of of IN cord-000248-zueoyesj 601 14 CD40 CD40 NNP cord-000248-zueoyesj 601 15 and and CC cord-000248-zueoyesj 601 16 CD59 CD59 NNP cord-000248-zueoyesj 601 17 are be VBP cord-000248-zueoyesj 601 18 enough enough JJ cord-000248-zueoyesj 601 19 to to TO cord-000248-zueoyesj 601 20 pinpoint pinpoint VB cord-000248-zueoyesj 601 21 an an DT cord-000248-zueoyesj 601 22 impaired impaired JJ cord-000248-zueoyesj 601 23 or or CC cord-000248-zueoyesj 601 24 abnormal abnormal JJ cord-000248-zueoyesj 601 25 immune immune JJ cord-000248-zueoyesj 601 26 response response NN cord-000248-zueoyesj 601 27 . . . cord-000248-zueoyesj 602 1 If if IN cord-000248-zueoyesj 602 2 we -PRON- PRP cord-000248-zueoyesj 602 3 continue continue VBP cord-000248-zueoyesj 602 4 the the DT cord-000248-zueoyesj 602 5 inspection inspection NN cord-000248-zueoyesj 602 6 of of IN cord-000248-zueoyesj 602 7 the the DT cord-000248-zueoyesj 602 8 list list NN cord-000248-zueoyesj 602 9 , , , cord-000248-zueoyesj 602 10 the the DT cord-000248-zueoyesj 602 11 first first JJ cord-000248-zueoyesj 602 12 20 20 CD cord-000248-zueoyesj 602 13 probes probe NNS cord-000248-zueoyesj 602 14 give give VBP cord-000248-zueoyesj 602 15 us -PRON- PRP cord-000248-zueoyesj 602 16 more more RBR cord-000248-zueoyesj 602 17 supporting supporting JJ cord-000248-zueoyesj 602 18 evidence evidence NN cord-000248-zueoyesj 602 19 . . . cord-000248-zueoyesj 603 1 The the DT cord-000248-zueoyesj 603 2 20 20 CD cord-000248-zueoyesj 603 3 probes probe NNS cord-000248-zueoyesj 603 4 correspond correspond VBP cord-000248-zueoyesj 603 5 to to IN cord-000248-zueoyesj 603 6 13 13 CD cord-000248-zueoyesj 603 7 different different JJ cord-000248-zueoyesj 603 8 genes gene NNS cord-000248-zueoyesj 603 9 . . . cord-000248-zueoyesj 604 1 Five five CD cord-000248-zueoyesj 604 2 of of IN cord-000248-zueoyesj 604 3 these these DT cord-000248-zueoyesj 604 4 13 13 CD cord-000248-zueoyesj 604 5 genes gene NNS cord-000248-zueoyesj 604 6 have have VBP cord-000248-zueoyesj 604 7 Genome Genome NNP cord-000248-zueoyesj 604 8 Ontology Ontology NNP cord-000248-zueoyesj 604 9 information information NN cord-000248-zueoyesj 604 10 annotated annotate VBN cord-000248-zueoyesj 604 11 as as IN cord-000248-zueoyesj 604 12 ' ' '' cord-000248-zueoyesj 604 13 ' ' '' cord-000248-zueoyesj 604 14 defense defense NN cord-000248-zueoyesj 604 15 response response NN cord-000248-zueoyesj 604 16 ' ' '' cord-000248-zueoyesj 604 17 ' ' '' cord-000248-zueoyesj 604 18 , , , cord-000248-zueoyesj 604 19 the the DT cord-000248-zueoyesj 604 20 above above RB cord-000248-zueoyesj 604 21 mentioned mention VBD cord-000248-zueoyesj 604 22 CD59 CD59 NNP cord-000248-zueoyesj 604 23 and and CC cord-000248-zueoyesj 604 24 CD40 CD40 NNP cord-000248-zueoyesj 604 25 as as RB cord-000248-zueoyesj 604 26 well well RB cord-000248-zueoyesj 604 27 as as IN cord-000248-zueoyesj 604 28 IL4R il4r NN cord-000248-zueoyesj 604 29 ( ( -LRB- cord-000248-zueoyesj 604 30 interleukin interleukin NN cord-000248-zueoyesj 604 31 4 4 CD cord-000248-zueoyesj 604 32 receptor receptor NN cord-000248-zueoyesj 604 33 , , , cord-000248-zueoyesj 604 34 CR616481 CR616481 NNP cord-000248-zueoyesj 604 35 ) ) -RRB- cord-000248-zueoyesj 604 36 , , . cord-000248-zueoyesj 605 1 XBP1 XBP1 NNP cord-000248-zueoyesj 605 2 ( ( -LRB- cord-000248-zueoyesj 605 3 X x NN cord-000248-zueoyesj 605 4 - - HYPH cord-000248-zueoyesj 605 5 box box NN cord-000248-zueoyesj 605 6 binding bind VBG cord-000248-zueoyesj 605 7 protein protein NN cord-000248-zueoyesj 605 8 1 1 CD cord-000248-zueoyesj 605 9 , , , cord-000248-zueoyesj 605 10 AK093842 ak093842 NN cord-000248-zueoyesj 605 11 ) ) -RRB- cord-000248-zueoyesj 605 12 and and CC cord-000248-zueoyesj 605 13 HLA HLA NNP cord-000248-zueoyesj 605 14 - - HYPH cord-000248-zueoyesj 605 15 A A NNP cord-000248-zueoyesj 605 16 ( ( -LRB- cord-000248-zueoyesj 605 17 major major JJ cord-000248-zueoyesj 605 18 histocompatibility histocompatibility NN cord-000248-zueoyesj 605 19 complex complex JJ cord-000248-zueoyesj 605 20 class class NN cord-000248-zueoyesj 606 1 I -PRON- PRP cord-000248-zueoyesj 606 2 HLA HLA NNP cord-000248-zueoyesj 606 3 - - HYPH cord-000248-zueoyesj 606 4 A29.1 A29.1 NNP cord-000248-zueoyesj 606 5 , , , cord-000248-zueoyesj 606 6 BU075230 BU075230 NNP cord-000248-zueoyesj 606 7 ) ) -RRB- cord-000248-zueoyesj 606 8 . . . cord-000248-zueoyesj 607 1 Takahashi Takahashi NNP cord-000248-zueoyesj 607 2 et et NNP cord-000248-zueoyesj 607 3 al al NNP cord-000248-zueoyesj 607 4 . . . cord-000248-zueoyesj 608 1 [ [ -LRB- cord-000248-zueoyesj 608 2 544 544 CD cord-000248-zueoyesj 608 3 ] ] -RRB- cord-000248-zueoyesj 608 4 report report VBP cord-000248-zueoyesj 608 5 an an DT cord-000248-zueoyesj 608 6 inverse inverse JJ cord-000248-zueoyesj 608 7 correlation correlation NN cord-000248-zueoyesj 608 8 between between IN cord-000248-zueoyesj 608 9 XBP1 XBP1 NNP cord-000248-zueoyesj 608 10 expression expression NN cord-000248-zueoyesj 608 11 and and CC cord-000248-zueoyesj 608 12 histological histological JJ cord-000248-zueoyesj 608 13 differentiation differentiation NN cord-000248-zueoyesj 608 14 in in IN cord-000248-zueoyesj 608 15 a a DT cord-000248-zueoyesj 608 16 series series NN cord-000248-zueoyesj 608 17 of of IN cord-000248-zueoyesj 608 18 prostate prostate NN cord-000248-zueoyesj 608 19 cancers cancer NNS cord-000248-zueoyesj 608 20 without without IN cord-000248-zueoyesj 608 21 hormonal hormonal JJ cord-000248-zueoyesj 608 22 therapy therapy NN cord-000248-zueoyesj 608 23 , , , cord-000248-zueoyesj 608 24 the the DT cord-000248-zueoyesj 608 25 expression expression NN cord-000248-zueoyesj 608 26 of of IN cord-000248-zueoyesj 608 27 XBP1 XBP1 NNP cord-000248-zueoyesj 608 28 was be VBD cord-000248-zueoyesj 608 29 localized localize VBN cord-000248-zueoyesj 608 30 in in IN cord-000248-zueoyesj 608 31 epithelial epithelial JJ cord-000248-zueoyesj 608 32 and and CC cord-000248-zueoyesj 608 33 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 608 34 cells cell NNS cord-000248-zueoyesj 608 35 of of IN cord-000248-zueoyesj 608 36 the the DT cord-000248-zueoyesj 608 37 prostate prostate NN cord-000248-zueoyesj 608 38 and and CC cord-000248-zueoyesj 608 39 the the DT cord-000248-zueoyesj 608 40 majority majority NN cord-000248-zueoyesj 608 41 of of IN cord-000248-zueoyesj 608 42 refractory refractory JJ cord-000248-zueoyesj 608 43 cancer cancer NN cord-000248-zueoyesj 608 44 cases case NNS cord-000248-zueoyesj 608 45 exhibited exhibit VBD cord-000248-zueoyesj 608 46 weak weak JJ cord-000248-zueoyesj 608 47 XBP1 XBP1 NNP cord-000248-zueoyesj 608 48 expression expression NN cord-000248-zueoyesj 608 49 ) ) -RRB- cord-000248-zueoyesj 609 1 , , , cord-000248-zueoyesj 609 2 MST1 MST1 NNP cord-000248-zueoyesj 609 3 / / SYM cord-000248-zueoyesj 609 4 STK4 STK4 NNP cord-000248-zueoyesj 609 5 ( ( -LRB- cord-000248-zueoyesj 609 6 along along IN cord-000248-zueoyesj 609 7 with with IN cord-000248-zueoyesj 609 8 MST2 MST2 NNP cord-000248-zueoyesj 609 9 / / SYM cord-000248-zueoyesj 609 10 STK3 STK3 NNP cord-000248-zueoyesj 609 11 ) ) -RRB- cord-000248-zueoyesj 609 12 act act VBP cord-000248-zueoyesj 609 13 as as IN cord-000248-zueoyesj 609 14 inhibitors inhibitor NNS cord-000248-zueoyesj 609 15 of of IN cord-000248-zueoyesj 609 16 endogenous endogenous JJ cord-000248-zueoyesj 609 17 AKT1 AKT1 NNP cord-000248-zueoyesj 609 18 , , , cord-000248-zueoyesj 609 19 a a DT cord-000248-zueoyesj 609 20 mediator mediator NN cord-000248-zueoyesj 609 21 of of IN cord-000248-zueoyesj 609 22 cell cell NN cord-000248-zueoyesj 609 23 growth growth NN cord-000248-zueoyesj 609 24 and and CC cord-000248-zueoyesj 609 25 survival survival NN cord-000248-zueoyesj 609 26 [ [ -LRB- cord-000248-zueoyesj 609 27 545 545 CD cord-000248-zueoyesj 609 28 ] ] -RRB- cord-000248-zueoyesj 609 29 . . . cord-000248-zueoyesj 610 1 We -PRON- PRP cord-000248-zueoyesj 610 2 can can MD cord-000248-zueoyesj 610 3 not not RB cord-000248-zueoyesj 610 4 yet yet RB cord-000248-zueoyesj 610 5 know know VB cord-000248-zueoyesj 610 6 what what WP cord-000248-zueoyesj 610 7 reason reason NN cord-000248-zueoyesj 610 8 is be VBZ cord-000248-zueoyesj 610 9 behind behind IN cord-000248-zueoyesj 610 10 their -PRON- PRP$ cord-000248-zueoyesj 610 11 joint joint JJ cord-000248-zueoyesj 610 12 downregulation downregulation NN cord-000248-zueoyesj 610 13 , , , cord-000248-zueoyesj 610 14 but but CC cord-000248-zueoyesj 610 15 another another DT cord-000248-zueoyesj 610 16 interesting interesting JJ cord-000248-zueoyesj 610 17 common common JJ cord-000248-zueoyesj 610 18 denominator denominator NN cord-000248-zueoyesj 610 19 is be VBZ cord-000248-zueoyesj 610 20 that that IN cord-000248-zueoyesj 610 21 12 12 CD cord-000248-zueoyesj 610 22 out out IN cord-000248-zueoyesj 610 23 of of IN cord-000248-zueoyesj 610 24 13 13 CD cord-000248-zueoyesj 610 25 genes gene NNS cord-000248-zueoyesj 610 26 share share VBP cord-000248-zueoyesj 610 27 a a DT cord-000248-zueoyesj 610 28 regulatory regulatory JJ cord-000248-zueoyesj 610 29 motif motif NN cord-000248-zueoyesj 610 30 for for IN cord-000248-zueoyesj 610 31 NF NF NNP cord-000248-zueoyesj 610 32 - - HYPH cord-000248-zueoyesj 610 33 kappaB kappaB NNP cord-000248-zueoyesj 610 34 ( ( -LRB- cord-000248-zueoyesj 610 35 according accord VBG cord-000248-zueoyesj 610 36 to to IN cord-000248-zueoyesj 610 37 TRANSFAC TRANSFAC NNP cord-000248-zueoyesj 610 38 , , , cord-000248-zueoyesj 610 39 V$NFKB_Q6_01 V$NFKB_Q6_01 NNP cord-000248-zueoyesj 610 40 ) ) -RRB- cord-000248-zueoyesj 610 41 . . . cord-000248-zueoyesj 611 1 A a DT cord-000248-zueoyesj 611 2 putative putative JJ cord-000248-zueoyesj 611 3 role role NN cord-000248-zueoyesj 611 4 for for IN cord-000248-zueoyesj 611 5 NF NF NNP cord-000248-zueoyesj 611 6 - - HYPH cord-000248-zueoyesj 611 7 kappaB kappaB NNP cord-000248-zueoyesj 611 8 in in IN cord-000248-zueoyesj 611 9 prostate prostate NN cord-000248-zueoyesj 611 10 cancer cancer NN cord-000248-zueoyesj 611 11 has have VBZ cord-000248-zueoyesj 611 12 been be VBN cord-000248-zueoyesj 611 13 reported report VBN cord-000248-zueoyesj 611 14 based base VBN cord-000248-zueoyesj 611 15 on on IN cord-000248-zueoyesj 611 16 the the DT cord-000248-zueoyesj 611 17 observation observation NN cord-000248-zueoyesj 611 18 of of IN cord-000248-zueoyesj 611 19 the the DT cord-000248-zueoyesj 611 20 centrality centrality NN cord-000248-zueoyesj 611 21 of of IN cord-000248-zueoyesj 611 22 NFKB NFKB NNP cord-000248-zueoyesj 611 23 on on IN cord-000248-zueoyesj 611 24 two two CD cord-000248-zueoyesj 611 25 up up RB cord-000248-zueoyesj 611 26 - - : cord-000248-zueoyesj 611 27 and and CC cord-000248-zueoyesj 611 28 downregulated downregulated JJ cord-000248-zueoyesj 611 29 networks network NNS cord-000248-zueoyesj 611 30 compairing compaire VBG cord-000248-zueoyesj 611 31 prostate prostate NN cord-000248-zueoyesj 611 32 tumors tumor NNS cord-000248-zueoyesj 611 33 and and CC cord-000248-zueoyesj 611 34 healthy healthy JJ cord-000248-zueoyesj 611 35 tissue tissue NN cord-000248-zueoyesj 611 36 [ [ -LRB- cord-000248-zueoyesj 611 37 546 546 CD cord-000248-zueoyesj 611 38 ] ] -RRB- cord-000248-zueoyesj 611 39 and and CC cord-000248-zueoyesj 611 40 in in IN cord-000248-zueoyesj 611 41 a a DT cord-000248-zueoyesj 611 42 larger large JJR cord-000248-zueoyesj 611 43 study study NN cord-000248-zueoyesj 611 44 by by IN cord-000248-zueoyesj 611 45 McDonnel McDonnel NNP cord-000248-zueoyesj 611 46 et et NNP cord-000248-zueoyesj 611 47 al al NNP cord-000248-zueoyesj 611 48 . . . cord-000248-zueoyesj 612 1 [ [ -LRB- cord-000248-zueoyesj 612 2 547 547 CD cord-000248-zueoyesj 612 3 ] ] -RRB- cord-000248-zueoyesj 612 4 ( ( -LRB- cord-000248-zueoyesj 612 5 255 255 CD cord-000248-zueoyesj 612 6 core core NN cord-000248-zueoyesj 612 7 prostate prostate NN cord-000248-zueoyesj 612 8 cancer cancer NN cord-000248-zueoyesj 612 9 tissue tissue NN cord-000248-zueoyesj 612 10 microarrays microarray NNS cord-000248-zueoyesj 612 11 from from IN cord-000248-zueoyesj 612 12 47 47 CD cord-000248-zueoyesj 612 13 prostatectomy prostatectomy NN cord-000248-zueoyesj 612 14 specimens specimen NNS cord-000248-zueoyesj 612 15 ) ) -RRB- cord-000248-zueoyesj 612 16 . . . cord-000248-zueoyesj 613 1 Several several JJ cord-000248-zueoyesj 613 2 other other JJ cord-000248-zueoyesj 613 3 researchers researcher NNS cord-000248-zueoyesj 613 4 are be VBP cord-000248-zueoyesj 613 5 currently currently RB cord-000248-zueoyesj 613 6 investigating investigate VBG cord-000248-zueoyesj 613 7 different different JJ cord-000248-zueoyesj 613 8 roles role NNS cord-000248-zueoyesj 613 9 of of IN cord-000248-zueoyesj 613 10 the the DT cord-000248-zueoyesj 613 11 NFKB NFKB NNP cord-000248-zueoyesj 613 12 family family NN cord-000248-zueoyesj 613 13 in in IN cord-000248-zueoyesj 613 14 prostate prostate NN cord-000248-zueoyesj 613 15 cancer cancer NN cord-000248-zueoyesj 613 16 [ [ -LRB- cord-000248-zueoyesj 613 17 548 548 CD cord-000248-zueoyesj 613 18 , , , cord-000248-zueoyesj 613 19 549 549 CD cord-000248-zueoyesj 613 20 , , , cord-000248-zueoyesj 613 21 550 550 CD cord-000248-zueoyesj 613 22 , , , cord-000248-zueoyesj 613 23 551 551 CD cord-000248-zueoyesj 613 24 , , , cord-000248-zueoyesj 613 25 552 552 CD cord-000248-zueoyesj 613 26 , , , cord-000248-zueoyesj 613 27 553 553 CD cord-000248-zueoyesj 613 28 , , , cord-000248-zueoyesj 613 29 554 554 CD cord-000248-zueoyesj 613 30 , , , cord-000248-zueoyesj 613 31 555 555 CD cord-000248-zueoyesj 613 32 ] ] -RRB- cord-000248-zueoyesj 613 33 and and CC cord-000248-zueoyesj 613 34 it -PRON- PRP cord-000248-zueoyesj 613 35 could could MD cord-000248-zueoyesj 613 36 be be VB cord-000248-zueoyesj 613 37 a a DT cord-000248-zueoyesj 613 38 promising promising JJ cord-000248-zueoyesj 613 39 target target NN cord-000248-zueoyesj 613 40 for for IN cord-000248-zueoyesj 613 41 intervention intervention NN cord-000248-zueoyesj 613 42 [ [ -LRB- cord-000248-zueoyesj 613 43 555 555 CD cord-000248-zueoyesj 613 44 , , , cord-000248-zueoyesj 613 45 556 556 CD cord-000248-zueoyesj 613 46 , , , cord-000248-zueoyesj 613 47 557 557 CD cord-000248-zueoyesj 613 48 , , , cord-000248-zueoyesj 613 49 558 558 CD cord-000248-zueoyesj 613 50 , , , cord-000248-zueoyesj 613 51 559 559 CD cord-000248-zueoyesj 613 52 , , , cord-000248-zueoyesj 613 53 560 560 CD cord-000248-zueoyesj 613 54 , , , cord-000248-zueoyesj 613 55 561 561 CD cord-000248-zueoyesj 613 56 , , , cord-000248-zueoyesj 613 57 562 562 CD cord-000248-zueoyesj 613 58 , , , cord-000248-zueoyesj 613 59 563 563 CD cord-000248-zueoyesj 613 60 , , , cord-000248-zueoyesj 613 61 564 564 CD cord-000248-zueoyesj 613 62 , , , cord-000248-zueoyesj 613 63 565 565 CD cord-000248-zueoyesj 613 64 , , , cord-000248-zueoyesj 613 65 566 566 CD cord-000248-zueoyesj 613 66 , , , cord-000248-zueoyesj 613 67 567 567 CD cord-000248-zueoyesj 613 68 , , , cord-000248-zueoyesj 613 69 568 568 CD cord-000248-zueoyesj 613 70 , , , cord-000248-zueoyesj 613 71 569 569 CD cord-000248-zueoyesj 613 72 , , , cord-000248-zueoyesj 613 73 570 570 CD cord-000248-zueoyesj 613 74 , , , cord-000248-zueoyesj 613 75 571 571 CD cord-000248-zueoyesj 613 76 ] ] -RRB- cord-000248-zueoyesj 613 77 . . . cord-000248-zueoyesj 614 1 If if IN cord-000248-zueoyesj 614 2 we -PRON- PRP cord-000248-zueoyesj 614 3 include include VBP cord-000248-zueoyesj 614 4 other other JJ cord-000248-zueoyesj 614 5 genes gene NNS cord-000248-zueoyesj 614 6 following follow VBG cord-000248-zueoyesj 614 7 the the DT cord-000248-zueoyesj 614 8 ranking ranking JJ cord-000248-zueoyesj 614 9 order order NN cord-000248-zueoyesj 614 10 , , , cord-000248-zueoyesj 614 11 the the DT cord-000248-zueoyesj 614 12 first first JJ cord-000248-zueoyesj 614 13 38 38 CD cord-000248-zueoyesj 614 14 genes gene NNS cord-000248-zueoyesj 614 15 in in IN cord-000248-zueoyesj 614 16 the the DT cord-000248-zueoyesj 614 17 ranking ranking NN cord-000248-zueoyesj 614 18 include include VBP cord-000248-zueoyesj 614 19 33 33 CD cord-000248-zueoyesj 614 20 that that WDT cord-000248-zueoyesj 614 21 have have VBP cord-000248-zueoyesj 614 22 the the DT cord-000248-zueoyesj 614 23 regulatory regulatory JJ cord-000248-zueoyesj 614 24 motif motif NN cord-000248-zueoyesj 614 25 V$NFKB_Q6_01 V$NFKB_Q6_01 NNP cord-000248-zueoyesj 615 1 ( ( -LRB- cord-000248-zueoyesj 615 2 GATHER gather VB cord-000248-zueoyesj 615 3 reports report NNS cord-000248-zueoyesj 615 4 for for IN cord-000248-zueoyesj 615 5 this this DT cord-000248-zueoyesj 615 6 list list NN cord-000248-zueoyesj 615 7 a a DT cord-000248-zueoyesj 615 8 p p NN cord-000248-zueoyesj 615 9 - - HYPH cord-000248-zueoyesj 615 10 value value NN cord-000248-zueoyesj 615 11 of of IN cord-000248-zueoyesj 615 12 0.0006 0.0006 CD cord-000248-zueoyesj 615 13 ) ) -RRB- cord-000248-zueoyesj 615 14 . . . cord-000248-zueoyesj 616 1 Even even RB cord-000248-zueoyesj 616 2 when when WRB cord-000248-zueoyesj 616 3 we -PRON- PRP cord-000248-zueoyesj 616 4 double double VBP cord-000248-zueoyesj 616 5 the the DT cord-000248-zueoyesj 616 6 list list NN cord-000248-zueoyesj 616 7 to to IN cord-000248-zueoyesj 616 8 the the DT cord-000248-zueoyesj 616 9 probes probe NNS cord-000248-zueoyesj 616 10 that that WDT cord-000248-zueoyesj 616 11 correspond correspond VBP cord-000248-zueoyesj 616 12 to to IN cord-000248-zueoyesj 616 13 the the DT cord-000248-zueoyesj 616 14 first first JJ cord-000248-zueoyesj 616 15 76 76 CD cord-000248-zueoyesj 616 16 different different JJ cord-000248-zueoyesj 616 17 genes gene NNS cord-000248-zueoyesj 616 18 recognized recognize VBN cord-000248-zueoyesj 616 19 by by IN cord-000248-zueoyesj 616 20 GATHER gather NN cord-000248-zueoyesj 616 21 , , , cord-000248-zueoyesj 616 22 58 58 CD cord-000248-zueoyesj 616 23 of of IN cord-000248-zueoyesj 616 24 them -PRON- PRP cord-000248-zueoyesj 616 25 have have VBP cord-000248-zueoyesj 616 26 the the DT cord-000248-zueoyesj 616 27 regulatory regulatory JJ cord-000248-zueoyesj 616 28 motif motif NN cord-000248-zueoyesj 617 1 V$NFKB_Q6_01 V$NFKB_Q6_01 NNP cord-000248-zueoyesj 617 2 , , , cord-000248-zueoyesj 617 3 with with IN cord-000248-zueoyesj 617 4 p p NN cord-000248-zueoyesj 617 5 - - HYPH cord-000248-zueoyesj 617 6 value value NN cord-000248-zueoyesj 617 7 = = SYM cord-000248-zueoyesj 617 8 0.003 0.003 CD cord-000248-zueoyesj 618 1 ( ( -LRB- cord-000248-zueoyesj 618 2 ATP6AP2 atp6ap2 UH cord-000248-zueoyesj 618 3 , , , cord-000248-zueoyesj 618 4 BCAT1 BCAT1 NNP cord-000248-zueoyesj 618 5 , , , cord-000248-zueoyesj 618 6 BTG2 BTG2 NNP cord-000248-zueoyesj 618 7 [ [ -LRB- cord-000248-zueoyesj 618 8 572 572 CD cord-000248-zueoyesj 618 9 , , , cord-000248-zueoyesj 618 10 573 573 CD cord-000248-zueoyesj 618 11 , , , cord-000248-zueoyesj 618 12 574 574 CD cord-000248-zueoyesj 618 13 , , , cord-000248-zueoyesj 618 14 575 575 CD cord-000248-zueoyesj 618 15 , , , cord-000248-zueoyesj 618 16 576 576 CD cord-000248-zueoyesj 618 17 , , , cord-000248-zueoyesj 618 18 577 577 CD cord-000248-zueoyesj 618 19 , , , cord-000248-zueoyesj 618 20 578 578 CD cord-000248-zueoyesj 618 21 ] ] -RRB- cord-000248-zueoyesj 618 22 , , . cord-000248-zueoyesj 619 1 C14orf123 C14orf123 NNPS cord-000248-zueoyesj 619 2 , , , cord-000248-zueoyesj 619 3 C18orf45 C18orf45 NNP cord-000248-zueoyesj 619 4 , , , cord-000248-zueoyesj 619 5 CCL2 CCL2 NNP cord-000248-zueoyesj 619 6 , , , cord-000248-zueoyesj 619 7 CD302 CD302 NNP cord-000248-zueoyesj 619 8 , , , cord-000248-zueoyesj 619 9 CD40 CD40 NNP cord-000248-zueoyesj 619 10 ( ( -LRB- cord-000248-zueoyesj 619 11 already already RB cord-000248-zueoyesj 619 12 discussed discuss VBN cord-000248-zueoyesj 619 13 ) ) -RRB- cord-000248-zueoyesj 619 14 , , , cord-000248-zueoyesj 619 15 CD59 CD59 NNP cord-000248-zueoyesj 619 16 ( ( -LRB- cord-000248-zueoyesj 619 17 already already RB cord-000248-zueoyesj 619 18 discussed discuss VBN cord-000248-zueoyesj 619 19 ) ) -RRB- cord-000248-zueoyesj 619 20 , , , cord-000248-zueoyesj 619 21 CHI3L1 CHI3L1 NNP cord-000248-zueoyesj 619 22 , , , cord-000248-zueoyesj 619 23 COL16A1 COL16A1 NNP cord-000248-zueoyesj 619 24 , , , cord-000248-zueoyesj 619 25 COMMD6 COMMD6 NNP cord-000248-zueoyesj 619 26 , , , cord-000248-zueoyesj 619 27 CRABP2 CRABP2 NNP cord-000248-zueoyesj 619 28 , , , cord-000248-zueoyesj 619 29 CSRP1 CSRP1 NNP cord-000248-zueoyesj 619 30 , , , cord-000248-zueoyesj 619 31 CTBP2 CTBP2 NNP cord-000248-zueoyesj 619 32 , , , cord-000248-zueoyesj 619 33 CTGF CTGF NNP cord-000248-zueoyesj 619 34 ( ( -LRB- cord-000248-zueoyesj 619 35 Connective connective JJ cord-000248-zueoyesj 619 36 tissue tissue NN cord-000248-zueoyesj 619 37 growth growth NN cord-000248-zueoyesj 619 38 factor factor NN cord-000248-zueoyesj 619 39 , , , cord-000248-zueoyesj 619 40 [ [ -LRB- cord-000248-zueoyesj 619 41 579 579 CD cord-000248-zueoyesj 619 42 , , , cord-000248-zueoyesj 619 43 580 580 CD cord-000248-zueoyesj 619 44 , , , cord-000248-zueoyesj 619 45 581 581 CD cord-000248-zueoyesj 619 46 , , , cord-000248-zueoyesj 619 47 582 582 CD cord-000248-zueoyesj 619 48 ] ] -RRB- cord-000248-zueoyesj 619 49 ) ) -RRB- cord-000248-zueoyesj 620 1 , , , cord-000248-zueoyesj 620 2 DES DES NNP cord-000248-zueoyesj 620 3 , , , cord-000248-zueoyesj 620 4 DMN DMN NNP cord-000248-zueoyesj 620 5 , , , cord-000248-zueoyesj 620 6 DNAJB1 dnajb1 NN cord-000248-zueoyesj 620 7 , , , cord-000248-zueoyesj 620 8 EGF EGF NNP cord-000248-zueoyesj 620 9 , , , cord-000248-zueoyesj 620 10 EMP1 EMP1 NNP cord-000248-zueoyesj 620 11 , , , cord-000248-zueoyesj 620 12 FHL2 FHL2 NNP cord-000248-zueoyesj 620 13 [ [ -LRB- cord-000248-zueoyesj 620 14 583 583 CD cord-000248-zueoyesj 620 15 , , , cord-000248-zueoyesj 620 16 584 584 CD cord-000248-zueoyesj 620 17 , , , cord-000248-zueoyesj 620 18 585 585 CD cord-000248-zueoyesj 620 19 , , , cord-000248-zueoyesj 620 20 586 586 CD cord-000248-zueoyesj 620 21 , , , cord-000248-zueoyesj 620 22 587 587 CD cord-000248-zueoyesj 620 23 , , , cord-000248-zueoyesj 620 24 588 588 CD cord-000248-zueoyesj 620 25 ] ] -RRB- cord-000248-zueoyesj 620 26 , , , cord-000248-zueoyesj 620 27 GRIPAP1 gripap1 RB cord-000248-zueoyesj 620 28 , , , cord-000248-zueoyesj 620 29 GSTM1 GSTM1 NNP cord-000248-zueoyesj 620 30 [ [ -LRB- cord-000248-zueoyesj 620 31 589 589 CD cord-000248-zueoyesj 620 32 , , , cord-000248-zueoyesj 620 33 590 590 CD cord-000248-zueoyesj 620 34 ] ] -RRB- cord-000248-zueoyesj 620 35 , , , cord-000248-zueoyesj 620 36 HBEGF HBEGF NNP cord-000248-zueoyesj 620 37 , , , cord-000248-zueoyesj 620 38 IL4R IL4R NNP cord-000248-zueoyesj 620 39 , , , cord-000248-zueoyesj 620 40 ITGA3 ITGA3 '' cord-000248-zueoyesj 620 41 , , , cord-000248-zueoyesj 620 42 ITGA7 itga7 CD cord-000248-zueoyesj 620 43 , , , cord-000248-zueoyesj 620 44 JUNB JUNB NNP cord-000248-zueoyesj 620 45 [ [ -LRB- cord-000248-zueoyesj 620 46 591 591 CD cord-000248-zueoyesj 620 47 , , , cord-000248-zueoyesj 620 48 592 592 CD cord-000248-zueoyesj 620 49 ] ] -RRB- cord-000248-zueoyesj 620 50 , , , cord-000248-zueoyesj 620 51 KIAA0152 KIAA0152 NNP cord-000248-zueoyesj 620 52 , , , cord-000248-zueoyesj 620 53 KIAA1191 KIAA1191 NNP cord-000248-zueoyesj 620 54 , , , cord-000248-zueoyesj 620 55 KIAA1324 KIAA1324 NNP cord-000248-zueoyesj 620 56 , , , cord-000248-zueoyesj 620 57 KLF6 KLF6 NNP cord-000248-zueoyesj 620 58 , , , cord-000248-zueoyesj 620 59 LAMB2 LAMB2 NNP cord-000248-zueoyesj 620 60 , , , cord-000248-zueoyesj 620 61 LMNA LMNA NNP cord-000248-zueoyesj 620 62 ( ( -LRB- cord-000248-zueoyesj 620 63 already already RB cord-000248-zueoyesj 620 64 discussed discuss VBN cord-000248-zueoyesj 620 65 ) ) -RRB- cord-000248-zueoyesj 620 66 , , , cord-000248-zueoyesj 620 67 NFATC1 nfatc1 UH cord-000248-zueoyesj 620 68 , , , cord-000248-zueoyesj 620 69 NFKB2 NFKB2 NNP cord-000248-zueoyesj 620 70 , , , cord-000248-zueoyesj 620 71 NUDC NUDC NNP cord-000248-zueoyesj 620 72 [ [ -LRB- cord-000248-zueoyesj 620 73 593 593 CD cord-000248-zueoyesj 620 74 ] ] -RRB- cord-000248-zueoyesj 620 75 , , , cord-000248-zueoyesj 620 76 P4HB P4HB NNP cord-000248-zueoyesj 620 77 , , , cord-000248-zueoyesj 620 78 PDK2 PDK2 NNP cord-000248-zueoyesj 620 79 , , , cord-000248-zueoyesj 620 80 PIM1 PIM1 NNP cord-000248-zueoyesj 620 81 , , , cord-000248-zueoyesj 620 82 PISD PISD NNP cord-000248-zueoyesj 620 83 , , , cord-000248-zueoyesj 620 84 PXN PXN NNP cord-000248-zueoyesj 620 85 , , , cord-000248-zueoyesj 620 86 RAP1B rap1b NN cord-000248-zueoyesj 620 87 , , , cord-000248-zueoyesj 620 88 RNF40 RNF40 NNP cord-000248-zueoyesj 620 89 , , , cord-000248-zueoyesj 620 90 SARA1 SARA1 NNP cord-000248-zueoyesj 620 91 , , , cord-000248-zueoyesj 620 92 SEC61A1 sec61a1 NN cord-000248-zueoyesj 620 93 , , , cord-000248-zueoyesj 620 94 SGTA SGTA NNP cord-000248-zueoyesj 620 95 [ [ -LRB- cord-000248-zueoyesj 620 96 594 594 CD cord-000248-zueoyesj 620 97 ] ] -RRB- cord-000248-zueoyesj 620 98 , , , cord-000248-zueoyesj 620 99 SLC12A2 SLC12A2 NNP cord-000248-zueoyesj 620 100 , , , cord-000248-zueoyesj 620 101 SRD5A2 SRD5A2 NNP cord-000248-zueoyesj 620 102 , , , cord-000248-zueoyesj 621 1 STAT6 STAT6 NNS cord-000248-zueoyesj 622 1 [ [ -LRB- cord-000248-zueoyesj 622 2 595 595 CD cord-000248-zueoyesj 622 3 , , , cord-000248-zueoyesj 622 4 596 596 CD cord-000248-zueoyesj 622 5 ] ] -RRB- cord-000248-zueoyesj 622 6 , , , cord-000248-zueoyesj 622 7 TACSTD2 TACSTD2 NNP cord-000248-zueoyesj 622 8 , , , cord-000248-zueoyesj 622 9 TBX1 TBX1 NNP cord-000248-zueoyesj 622 10 , , , cord-000248-zueoyesj 622 11 TMED3 TMED3 NNP cord-000248-zueoyesj 622 12 , , , cord-000248-zueoyesj 622 13 VPS39 vps39 NN cord-000248-zueoyesj 622 14 , , , cord-000248-zueoyesj 622 15 WDFY3 WDFY3 NNP cord-000248-zueoyesj 622 16 , , , cord-000248-zueoyesj 622 17 XBP1 XBP1 NNP cord-000248-zueoyesj 623 1 [ [ -LRB- cord-000248-zueoyesj 623 2 544 544 CD cord-000248-zueoyesj 623 3 ] ] -RRB- cord-000248-zueoyesj 623 4 , , , cord-000248-zueoyesj 623 5 ZAK ZAK NNP cord-000248-zueoyesj 623 6 ) ) -RRB- cord-000248-zueoyesj 623 7 . . . cord-000248-zueoyesj 624 1 This this DT cord-000248-zueoyesj 624 2 result result NN cord-000248-zueoyesj 624 3 indicates indicate VBZ cord-000248-zueoyesj 624 4 that that IN cord-000248-zueoyesj 624 5 our -PRON- PRP$ cord-000248-zueoyesj 624 6 results result NNS cord-000248-zueoyesj 624 7 support support VBP cord-000248-zueoyesj 624 8 the the DT cord-000248-zueoyesj 624 9 importance importance NN cord-000248-zueoyesj 624 10 of of IN cord-000248-zueoyesj 624 11 NFkappa NFkappa NNP cord-000248-zueoyesj 624 12 - - HYPH cord-000248-zueoyesj 624 13 B B NNP cord-000248-zueoyesj 624 14 and and CC cord-000248-zueoyesj 624 15 the the DT cord-000248-zueoyesj 624 16 huge huge JJ cord-000248-zueoyesj 624 17 amount amount NN cord-000248-zueoyesj 624 18 of of IN cord-000248-zueoyesj 624 19 research research NN cord-000248-zueoyesj 624 20 effort effort NN cord-000248-zueoyesj 624 21 to to TO cord-000248-zueoyesj 624 22 understand understand VB cord-000248-zueoyesj 624 23 the the DT cord-000248-zueoyesj 624 24 role role NN cord-000248-zueoyesj 624 25 of of IN cord-000248-zueoyesj 624 26 the the DT cord-000248-zueoyesj 624 27 NFkappa NFkappa NNP cord-000248-zueoyesj 624 28 - - HYPH cord-000248-zueoyesj 624 29 B B NNP cord-000248-zueoyesj 624 30 activity activity NN cord-000248-zueoyesj 624 31 and and CC cord-000248-zueoyesj 624 32 its -PRON- PRP$ cord-000248-zueoyesj 624 33 potential potential NN cord-000248-zueoyesj 624 34 as as IN cord-000248-zueoyesj 624 35 a a DT cord-000248-zueoyesj 624 36 target target NN cord-000248-zueoyesj 624 37 for for IN cord-000248-zueoyesj 624 38 intervention intervention NN cord-000248-zueoyesj 624 39 in in IN cord-000248-zueoyesj 624 40 prostate prostate NN cord-000248-zueoyesj 624 41 cancer cancer NN cord-000248-zueoyesj 624 42 ( ( -LRB- cord-000248-zueoyesj 624 43 File File NNP cord-000248-zueoyesj 624 44 S4 S4 NNP cord-000248-zueoyesj 624 45 ) ) -RRB- cord-000248-zueoyesj 624 46 . . . cord-000248-zueoyesj 625 1 The the DT cord-000248-zueoyesj 625 2 group group NN cord-000248-zueoyesj 625 3 of of IN cord-000248-zueoyesj 625 4 58 58 CD cord-000248-zueoyesj 625 5 biomarkers biomarker NNS cord-000248-zueoyesj 625 6 contains contain VBZ cord-000248-zueoyesj 625 7 one one CD cord-000248-zueoyesj 625 8 of of IN cord-000248-zueoyesj 625 9 particular particular JJ cord-000248-zueoyesj 625 10 interest interest NN cord-000248-zueoyesj 625 11 , , , cord-000248-zueoyesj 625 12 STAT6 stat6 XX cord-000248-zueoyesj 625 13 . . . cord-000248-zueoyesj 626 1 This this DT cord-000248-zueoyesj 626 2 gene gene NN cord-000248-zueoyesj 626 3 is be VBZ cord-000248-zueoyesj 626 4 considered consider VBN cord-000248-zueoyesj 626 5 a a DT cord-000248-zueoyesj 626 6 survival survival NN cord-000248-zueoyesj 626 7 factor factor NN cord-000248-zueoyesj 626 8 in in IN cord-000248-zueoyesj 626 9 prostate prostate NN cord-000248-zueoyesj 626 10 cancer cancer NN cord-000248-zueoyesj 626 11 and and CC cord-000248-zueoyesj 626 12 a a DT cord-000248-zueoyesj 626 13 key key JJ cord-000248-zueoyesj 626 14 regulator regulator NN cord-000248-zueoyesj 626 15 of of IN cord-000248-zueoyesj 626 16 the the DT cord-000248-zueoyesj 626 17 genetic genetic JJ cord-000248-zueoyesj 626 18 transcriptional transcriptional JJ cord-000248-zueoyesj 626 19 program program NN cord-000248-zueoyesj 626 20 responsible responsible JJ cord-000248-zueoyesj 626 21 for for IN cord-000248-zueoyesj 626 22 progression progression NN cord-000248-zueoyesj 626 23 [ [ -LRB- cord-000248-zueoyesj 626 24 595 595 CD cord-000248-zueoyesj 626 25 ] ] -RRB- cord-000248-zueoyesj 626 26 . . . cord-000248-zueoyesj 627 1 STAT6 STAT6 NNP cord-000248-zueoyesj 627 2 has have VBZ cord-000248-zueoyesj 627 3 been be VBN cord-000248-zueoyesj 627 4 recently recently RB cord-000248-zueoyesj 627 5 linked link VBN cord-000248-zueoyesj 627 6 to to IN cord-000248-zueoyesj 627 7 HPN HPN NNP cord-000248-zueoyesj 627 8 as as IN cord-000248-zueoyesj 627 9 one one CD cord-000248-zueoyesj 627 10 of of IN cord-000248-zueoyesj 627 11 the the DT cord-000248-zueoyesj 627 12 most most RBS cord-000248-zueoyesj 627 13 robust robust JJ cord-000248-zueoyesj 627 14 pair pair NN cord-000248-zueoyesj 627 15 of of IN cord-000248-zueoyesj 627 16 biomarkers biomarker NNS cord-000248-zueoyesj 627 17 for for IN cord-000248-zueoyesj 627 18 prostate prostate NN cord-000248-zueoyesj 627 19 cancer cancer NN cord-000248-zueoyesj 627 20 using use VBG cord-000248-zueoyesj 627 21 an an DT cord-000248-zueoyesj 627 22 integrative integrative JJ cord-000248-zueoyesj 627 23 approach approach NN cord-000248-zueoyesj 627 24 that that WDT cord-000248-zueoyesj 627 25 linked link VBD cord-000248-zueoyesj 627 26 several several JJ cord-000248-zueoyesj 627 27 microarray microarray NN cord-000248-zueoyesj 627 28 datasets dataset NNS cord-000248-zueoyesj 627 29 [ [ -LRB- cord-000248-zueoyesj 627 30 596 596 CD cord-000248-zueoyesj 627 31 ] ] -RRB- cord-000248-zueoyesj 627 32 . . . cord-000248-zueoyesj 628 1 Analysis analysis NN cord-000248-zueoyesj 628 2 using use VBG cord-000248-zueoyesj 628 3 GATHER gather NN cord-000248-zueoyesj 628 4 of of IN cord-000248-zueoyesj 628 5 this this DT cord-000248-zueoyesj 628 6 group group NN cord-000248-zueoyesj 628 7 reveals reveal VBZ cord-000248-zueoyesj 628 8 that that IN cord-000248-zueoyesj 628 9 six six CD cord-000248-zueoyesj 628 10 of of IN cord-000248-zueoyesj 628 11 these these DT cord-000248-zueoyesj 628 12 58 58 CD cord-000248-zueoyesj 628 13 genes gene NNS cord-000248-zueoyesj 628 14 are be VBP cord-000248-zueoyesj 628 15 in in IN cord-000248-zueoyesj 628 16 KEGG KEGG NNP cord-000248-zueoyesj 628 17 pathway pathway NN cord-000248-zueoyesj 628 18 path path NN cord-000248-zueoyesj 628 19 : : : cord-000248-zueoyesj 629 1 hsa04510 hsa04510 NNP cord-000248-zueoyesj 629 2 , , , cord-000248-zueoyesj 629 3 Focal focal JJ cord-000248-zueoyesj 629 4 adhesion adhesion NN cord-000248-zueoyesj 629 5 ( ( -LRB- cord-000248-zueoyesj 629 6 EGF EGF NNP cord-000248-zueoyesj 629 7 , , , cord-000248-zueoyesj 629 8 ITGA3 ITGA3 '' cord-000248-zueoyesj 629 9 , , , cord-000248-zueoyesj 629 10 ITGA7 itga7 FW cord-000248-zueoyesj 629 11 , , , cord-000248-zueoyesj 630 1 LAMB2 LAMB2 NNP cord-000248-zueoyesj 630 2 , , , cord-000248-zueoyesj 630 3 PXN PXN NNP cord-000248-zueoyesj 630 4 , , , cord-000248-zueoyesj 630 5 RAP1B rap1b NN cord-000248-zueoyesj 630 6 , , , cord-000248-zueoyesj 630 7 p p NN cord-000248-zueoyesj 630 8 - - HYPH cord-000248-zueoyesj 630 9 value,0.0007 value,0.0007 NNP cord-000248-zueoyesj 630 10 ) ) -RRB- cord-000248-zueoyesj 631 1 and and CC cord-000248-zueoyesj 631 2 from from IN cord-000248-zueoyesj 631 3 these these DT cord-000248-zueoyesj 631 4 there there EX cord-000248-zueoyesj 631 5 are be VBP cord-000248-zueoyesj 631 6 three three CD cord-000248-zueoyesj 631 7 in in IN cord-000248-zueoyesj 631 8 pathway pathway NN cord-000248-zueoyesj 631 9 : : : cord-000248-zueoyesj 632 1 hsa045122 hsa045122 NNP cord-000248-zueoyesj 632 2 , , , cord-000248-zueoyesj 632 3 ECM ECM NNP cord-000248-zueoyesj 632 4 - - HYPH cord-000248-zueoyesj 632 5 receptor receptor NN cord-000248-zueoyesj 632 6 interaction interaction NN cord-000248-zueoyesj 632 7 ( ( -LRB- cord-000248-zueoyesj 632 8 ITGA3 ITGA3 '' cord-000248-zueoyesj 632 9 , , , cord-000248-zueoyesj 632 10 ITGA7 itga7 CD cord-000248-zueoyesj 632 11 , , , cord-000248-zueoyesj 632 12 LAMB2 LAMB2 NNP cord-000248-zueoyesj 632 13 , , , cord-000248-zueoyesj 632 14 p p NN cord-000248-zueoyesj 632 15 - - HYPH cord-000248-zueoyesj 632 16 value,0.005 value,0.005 NNP cord-000248-zueoyesj 632 17 ) ) -RRB- cord-000248-zueoyesj 632 18 while while IN cord-000248-zueoyesj 632 19 four four CD cord-000248-zueoyesj 632 20 of of IN cord-000248-zueoyesj 632 21 these these DT cord-000248-zueoyesj 632 22 six six CD cord-000248-zueoyesj 632 23 are be VBP cord-000248-zueoyesj 632 24 also also RB cord-000248-zueoyesj 632 25 in in IN cord-000248-zueoyesj 632 26 path path NN cord-000248-zueoyesj 632 27 : : : cord-000248-zueoyesj 633 1 hsa04810 hsa04810 NNP cord-000248-zueoyesj 633 2 : : : cord-000248-zueoyesj 633 3 Regulation regulation NN cord-000248-zueoyesj 633 4 of of IN cord-000248-zueoyesj 633 5 actin actin NN cord-000248-zueoyesj 633 6 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 633 7 , , , cord-000248-zueoyesj 633 8 ( ( -LRB- cord-000248-zueoyesj 633 9 EGF EGF NNP cord-000248-zueoyesj 633 10 , , , cord-000248-zueoyesj 633 11 ITGA3 ITGA3 '' cord-000248-zueoyesj 633 12 , , , cord-000248-zueoyesj 633 13 ITGA7 itga7 CD cord-000248-zueoyesj 633 14 , , , cord-000248-zueoyesj 633 15 PXN PXN NNP cord-000248-zueoyesj 633 16 , , , cord-000248-zueoyesj 633 17 p p NN cord-000248-zueoyesj 633 18 - - HYPH cord-000248-zueoyesj 633 19 value,0.01 value,0.01 NN cord-000248-zueoyesj 633 20 ) ) -RRB- cord-000248-zueoyesj 633 21 . . . cord-000248-zueoyesj 634 1 LAMB2 LAMB2 NNP cord-000248-zueoyesj 634 2 . . . cord-000248-zueoyesj 635 1 Alterations alteration NNS cord-000248-zueoyesj 635 2 of of IN cord-000248-zueoyesj 635 3 the the DT cord-000248-zueoyesj 635 4 gene gene NN cord-000248-zueoyesj 635 5 profile profile NN cord-000248-zueoyesj 635 6 of of IN cord-000248-zueoyesj 635 7 LAMB2 LAMB2 NNP cord-000248-zueoyesj 635 8 and and CC cord-000248-zueoyesj 635 9 CDKN2C CDKN2C NNP cord-000248-zueoyesj 635 10 / / SYM cord-000248-zueoyesj 635 11 p18(Ink4c p18(ink4c NN cord-000248-zueoyesj 635 12 ) ) -RRB- cord-000248-zueoyesj 635 13 , , , cord-000248-zueoyesj 635 14 a a DT cord-000248-zueoyesj 635 15 CDK4 CDK4 NNP cord-000248-zueoyesj 635 16 inhibitor inhibitor NN cord-000248-zueoyesj 635 17 , , , cord-000248-zueoyesj 635 18 have have VBP cord-000248-zueoyesj 635 19 been be VBN cord-000248-zueoyesj 635 20 reported report VBN cord-000248-zueoyesj 635 21 on on IN cord-000248-zueoyesj 635 22 the the DT cord-000248-zueoyesj 635 23 transition transition NN cord-000248-zueoyesj 635 24 from from IN cord-000248-zueoyesj 635 25 prostatic prostatic JJ cord-000248-zueoyesj 635 26 intraepithelial intraepithelial JJ cord-000248-zueoyesj 635 27 neoplasia neoplasia NN cord-000248-zueoyesj 635 28 ( ( -LRB- cord-000248-zueoyesj 635 29 PIN pin NN cord-000248-zueoyesj 635 30 ) ) -RRB- cord-000248-zueoyesj 635 31 to to IN cord-000248-zueoyesj 635 32 prostate prostate NN cord-000248-zueoyesj 635 33 cancer cancer NN cord-000248-zueoyesj 635 34 [ [ -LRB- cord-000248-zueoyesj 635 35 597 597 CD cord-000248-zueoyesj 635 36 ] ] -RRB- cord-000248-zueoyesj 635 37 ( ( -LRB- cord-000248-zueoyesj 635 38 see see VB cord-000248-zueoyesj 635 39 also also RB cord-000248-zueoyesj 635 40 [ [ -LRB- cord-000248-zueoyesj 635 41 333 333 CD cord-000248-zueoyesj 635 42 ] ] -RRB- cord-000248-zueoyesj 635 43 ) ) -RRB- cord-000248-zueoyesj 635 44 . . . cord-000248-zueoyesj 636 1 3 3 LS cord-000248-zueoyesj 636 2 ) ) -RRB- cord-000248-zueoyesj 636 3 . . . cord-000248-zueoyesj 637 1 The the DT cord-000248-zueoyesj 637 2 contribution contribution NN cord-000248-zueoyesj 637 3 of of IN cord-000248-zueoyesj 637 4 the the DT cord-000248-zueoyesj 637 5 loss loss NN cord-000248-zueoyesj 637 6 of of IN cord-000248-zueoyesj 637 7 these these DT cord-000248-zueoyesj 637 8 integrins integrin NNS cord-000248-zueoyesj 637 9 and and CC cord-000248-zueoyesj 637 10 the the DT cord-000248-zueoyesj 637 11 subsequent subsequent JJ cord-000248-zueoyesj 637 12 derived derive VBN cord-000248-zueoyesj 637 13 impairment impairment NN cord-000248-zueoyesj 637 14 on on IN cord-000248-zueoyesj 637 15 cell cell NN cord-000248-zueoyesj 637 16 adhesion adhesion NN cord-000248-zueoyesj 637 17 has have VBZ cord-000248-zueoyesj 637 18 been be VBN cord-000248-zueoyesj 637 19 reported report VBN cord-000248-zueoyesj 637 20 in in IN cord-000248-zueoyesj 637 21 several several JJ cord-000248-zueoyesj 637 22 tumours tumour NNS cord-000248-zueoyesj 637 23 . . . cord-000248-zueoyesj 638 1 Ren Ren NNP cord-000248-zueoyesj 638 2 et et NNP cord-000248-zueoyesj 638 3 al al NNP cord-000248-zueoyesj 638 4 . . . cord-000248-zueoyesj 639 1 in in IN cord-000248-zueoyesj 639 2 [ [ -LRB- cord-000248-zueoyesj 639 3 598 598 CD cord-000248-zueoyesj 639 4 ] ] -RRB- cord-000248-zueoyesj 639 5 report report NN cord-000248-zueoyesj 639 6 that that IN cord-000248-zueoyesj 639 7 ' ' '' cord-000248-zueoyesj 639 8 ' ' `` cord-000248-zueoyesj 639 9 Focal focal JJ cord-000248-zueoyesj 639 10 or or CC cord-000248-zueoyesj 639 11 no no DT cord-000248-zueoyesj 639 12 integrin integrin RB cord-000248-zueoyesj 639 13 alpha alpha NN cord-000248-zueoyesj 639 14 7 7 CD cord-000248-zueoyesj 639 15 eexpression eexpression NN cord-000248-zueoyesj 639 16 in in IN cord-000248-zueoyesj 639 17 human human JJ cord-000248-zueoyesj 639 18 prostate prostate NN cord-000248-zueoyesj 639 19 cancer cancer NN cord-000248-zueoyesj 639 20 and and CC cord-000248-zueoyesj 639 21 soft soft JJ cord-000248-zueoyesj 639 22 tissue tissue NN cord-000248-zueoyesj 639 23 leiomyosarcoma leiomyosarcoma NNP cord-000248-zueoyesj 639 24 was be VBD cord-000248-zueoyesj 639 25 associated associate VBN cord-000248-zueoyesj 639 26 with with IN cord-000248-zueoyesj 639 27 a a DT cord-000248-zueoyesj 639 28 reduction reduction NN cord-000248-zueoyesj 639 29 of of IN cord-000248-zueoyesj 639 30 metastasis metastasis NN cord-000248-zueoyesj 639 31 - - HYPH cord-000248-zueoyesj 639 32 free free JJ cord-000248-zueoyesj 639 33 survival survival NN cord-000248-zueoyesj 639 34 ( ( -LRB- cord-000248-zueoyesj 639 35 for for IN cord-000248-zueoyesj 639 36 example example NN cord-000248-zueoyesj 639 37 , , , cord-000248-zueoyesj 639 38 for for IN cord-000248-zueoyesj 639 39 prostate prostate NN cord-000248-zueoyesj 639 40 cancer cancer NN cord-000248-zueoyesj 639 41 with with IN cord-000248-zueoyesj 639 42 focal focal JJ cord-000248-zueoyesj 639 43 or or CC cord-000248-zueoyesj 639 44 no no DT cord-000248-zueoyesj 639 45 expression expression NN cord-000248-zueoyesj 639 46 , , , cord-000248-zueoyesj 639 47 5-year 5-year CD cord-000248-zueoyesj 639 48 metastasis metastasis NN cord-000248-zueoyesj 639 49 - - HYPH cord-000248-zueoyesj 639 50 free free JJ cord-000248-zueoyesj 639 51 survival survival NN cord-000248-zueoyesj 639 52 was be VBD cord-000248-zueoyesj 639 53 32 32 CD cord-000248-zueoyesj 639 54 % % NN cord-000248-zueoyesj 639 55 , , , cord-000248-zueoyesj 639 56 95 95 CD cord-000248-zueoyesj 639 57 % % NN cord-000248-zueoyesj 639 58 CI ci NN cord-000248-zueoyesj 639 59 = = SYM cord-000248-zueoyesj 639 60 24.4 24.4 CD cord-000248-zueoyesj 639 61 % % NN cord-000248-zueoyesj 639 62 to to IN cord-000248-zueoyesj 639 63 40.3 40.3 CD cord-000248-zueoyesj 639 64 % % NN cord-000248-zueoyesj 639 65 , , , cord-000248-zueoyesj 639 66 and and CC cord-000248-zueoyesj 639 67 for for IN cord-000248-zueoyesj 639 68 prostate prostate NN cord-000248-zueoyesj 639 69 cancer cancer NN cord-000248-zueoyesj 639 70 with with IN cord-000248-zueoyesj 639 71 at at IN cord-000248-zueoyesj 639 72 least least JJS cord-000248-zueoyesj 639 73 weak weak JJ cord-000248-zueoyesj 639 74 expression expression NN cord-000248-zueoyesj 639 75 , , , cord-000248-zueoyesj 639 76 it -PRON- PRP cord-000248-zueoyesj 639 77 was be VBD cord-000248-zueoyesj 639 78 85 85 CD cord-000248-zueoyesj 639 79 % % NN cord-000248-zueoyesj 639 80 , , , cord-000248-zueoyesj 639 81 95 95 CD cord-000248-zueoyesj 639 82 % % NN cord-000248-zueoyesj 639 83 CI ci NN cord-000248-zueoyesj 639 84 = = SYM cord-000248-zueoyesj 639 85 79 79 CD cord-000248-zueoyesj 639 86 % % NN cord-000248-zueoyesj 639 87 to to IN cord-000248-zueoyesj 639 88 91 91 CD cord-000248-zueoyesj 639 89 % % NN cord-000248-zueoyesj 639 90 ; ; : cord-000248-zueoyesj 639 91 p p NN cord-000248-zueoyesj 639 92 - - HYPH cord-000248-zueoyesj 639 93 value,.001 value,.001 JJ cord-000248-zueoyesj 639 94 ) ) -RRB- cord-000248-zueoyesj 639 95 ' ' '' cord-000248-zueoyesj 639 96 ' ' '' cord-000248-zueoyesj 639 97 . . . cord-000248-zueoyesj 639 98 '' '' '' cord-000248-zueoyesj 640 1 Any any DT cord-000248-zueoyesj 640 2 method method NN cord-000248-zueoyesj 640 3 involving involve VBG cord-000248-zueoyesj 640 4 the the DT cord-000248-zueoyesj 640 5 notion notion NN cord-000248-zueoyesj 640 6 of of IN cord-000248-zueoyesj 640 7 entropy entropy NN cord-000248-zueoyesj 640 8 , , , cord-000248-zueoyesj 640 9 the the DT cord-000248-zueoyesj 640 10 very very JJ cord-000248-zueoyesj 640 11 existence existence NN cord-000248-zueoyesj 640 12 of of IN cord-000248-zueoyesj 640 13 which which WDT cord-000248-zueoyesj 640 14 depends depend VBZ cord-000248-zueoyesj 640 15 on on IN cord-000248-zueoyesj 640 16 the the DT cord-000248-zueoyesj 640 17 second second JJ cord-000248-zueoyesj 640 18 law law NN cord-000248-zueoyesj 640 19 of of IN cord-000248-zueoyesj 640 20 thermodynamics thermodynamic NNS cord-000248-zueoyesj 640 21 , , , cord-000248-zueoyesj 640 22 will will MD cord-000248-zueoyesj 640 23 doubtless doubtless RB cord-000248-zueoyesj 640 24 seem seem VB cord-000248-zueoyesj 640 25 to to IN cord-000248-zueoyesj 640 26 many many JJ cord-000248-zueoyesj 640 27 far far RB cord-000248-zueoyesj 640 28 - - HYPH cord-000248-zueoyesj 640 29 fetched fetch VBN cord-000248-zueoyesj 640 30 , , , cord-000248-zueoyesj 640 31 and and CC cord-000248-zueoyesj 640 32 may may MD cord-000248-zueoyesj 640 33 repel repel VB cord-000248-zueoyesj 640 34 beginners beginner NNS cord-000248-zueoyesj 640 35 as as IN cord-000248-zueoyesj 640 36 obscure obscure JJ cord-000248-zueoyesj 640 37 and and CC cord-000248-zueoyesj 640 38 difficult difficult JJ cord-000248-zueoyesj 640 39 of of IN cord-000248-zueoyesj 640 40 comprehension comprehension NN cord-000248-zueoyesj 640 41 . . . cord-000248-zueoyesj 640 42 ' ' '' cord-000248-zueoyesj 640 43 ' ' '' cord-000248-zueoyesj 641 1 Willard Willard NNP cord-000248-zueoyesj 641 2 Gibbs Gibbs NNP cord-000248-zueoyesj 641 3 , , , cord-000248-zueoyesj 641 4 Graphical Graphical NNP cord-000248-zueoyesj 641 5 Methods Methods NNPS cord-000248-zueoyesj 641 6 in in IN cord-000248-zueoyesj 641 7 the the DT cord-000248-zueoyesj 641 8 Thermodynamics thermodynamic NNS cord-000248-zueoyesj 641 9 of of IN cord-000248-zueoyesj 641 10 Fluids fluid NNS cord-000248-zueoyesj 641 11 , , , cord-000248-zueoyesj 641 12 ( ( -LRB- cord-000248-zueoyesj 641 13 1873 1873 CD cord-000248-zueoyesj 641 14 ) ) -RRB- cord-000248-zueoyesj 642 1 The the DT cord-000248-zueoyesj 642 2 changes change NNS cord-000248-zueoyesj 642 3 of of IN cord-000248-zueoyesj 642 4 the the DT cord-000248-zueoyesj 642 5 Normalized Normalized NNP cord-000248-zueoyesj 642 6 Shannon Shannon NNP cord-000248-zueoyesj 642 7 Entropy Entropy NNP cord-000248-zueoyesj 642 8 and and CC cord-000248-zueoyesj 642 9 Statistical Statistical NNP cord-000248-zueoyesj 642 10 Complexity Complexity NNP cord-000248-zueoyesj 642 11 of of IN cord-000248-zueoyesj 642 12 the the DT cord-000248-zueoyesj 642 13 gene gene NN cord-000248-zueoyesj 642 14 expression expression NN cord-000248-zueoyesj 642 15 profile profile NN cord-000248-zueoyesj 642 16 of of IN cord-000248-zueoyesj 642 17 a a DT cord-000248-zueoyesj 642 18 cancer cancer NN cord-000248-zueoyesj 642 19 cell cell NN cord-000248-zueoyesj 642 20 are be VBP cord-000248-zueoyesj 642 21 associated associate VBN cord-000248-zueoyesj 642 22 with with IN cord-000248-zueoyesj 642 23 the the DT cord-000248-zueoyesj 642 24 gradual gradual JJ cord-000248-zueoyesj 642 25 deterioration deterioration NN cord-000248-zueoyesj 642 26 of of IN cord-000248-zueoyesj 642 27 genome genome NN cord-000248-zueoyesj 642 28 transcriptional transcriptional JJ cord-000248-zueoyesj 642 29 information information NN cord-000248-zueoyesj 642 30 content content NN cord-000248-zueoyesj 642 31 due due IN cord-000248-zueoyesj 642 32 to to IN cord-000248-zueoyesj 642 33 the the DT cord-000248-zueoyesj 642 34 modification modification NN cord-000248-zueoyesj 642 35 of of IN cord-000248-zueoyesj 642 36 its -PRON- PRP$ cord-000248-zueoyesj 642 37 structural structural JJ cord-000248-zueoyesj 642 38 and and CC cord-000248-zueoyesj 642 39 functional functional JJ cord-000248-zueoyesj 642 40 integrity integrity NN cord-000248-zueoyesj 642 41 during during IN cord-000248-zueoyesj 642 42 disease disease NN cord-000248-zueoyesj 642 43 progression progression NN cord-000248-zueoyesj 642 44 . . . cord-000248-zueoyesj 643 1 Our -PRON- PRP$ cord-000248-zueoyesj 643 2 results result NNS cord-000248-zueoyesj 643 3 clearly clearly RB cord-000248-zueoyesj 643 4 suggest suggest VBP cord-000248-zueoyesj 643 5 that that IN cord-000248-zueoyesj 643 6 we -PRON- PRP cord-000248-zueoyesj 643 7 can can MD cord-000248-zueoyesj 643 8 track track VB cord-000248-zueoyesj 643 9 the the DT cord-000248-zueoyesj 643 10 cancer cancer NN cord-000248-zueoyesj 643 11 cell cell NN cord-000248-zueoyesj 643 12 's 's POS cord-000248-zueoyesj 643 13 progression progression NN cord-000248-zueoyesj 643 14 by by IN cord-000248-zueoyesj 643 15 following follow VBG cord-000248-zueoyesj 643 16 observable observable JJ cord-000248-zueoyesj 643 17 changes change NNS cord-000248-zueoyesj 643 18 in in IN cord-000248-zueoyesj 643 19 the the DT cord-000248-zueoyesj 643 20 Shannon Shannon NNP cord-000248-zueoyesj 643 21 Entropy Entropy NNP cord-000248-zueoyesj 643 22 and and CC cord-000248-zueoyesj 643 23 , , , cord-000248-zueoyesj 643 24 in in IN cord-000248-zueoyesj 643 25 particular particular JJ cord-000248-zueoyesj 643 26 , , , cord-000248-zueoyesj 643 27 by by IN cord-000248-zueoyesj 643 28 employing employ VBG cord-000248-zueoyesj 643 29 the the DT cord-000248-zueoyesj 643 30 Jensen Jensen NNP cord-000248-zueoyesj 643 31 - - HYPH cord-000248-zueoyesj 643 32 Shannon Shannon NNP cord-000248-zueoyesj 643 33 Divergence Divergence NNP cord-000248-zueoyesj 643 34 of of IN cord-000248-zueoyesj 643 35 the the DT cord-000248-zueoyesj 643 36 gene gene NN cord-000248-zueoyesj 643 37 expression expression NN cord-000248-zueoyesj 643 38 profile profile NN cord-000248-zueoyesj 643 39 of of IN cord-000248-zueoyesj 643 40 a a DT cord-000248-zueoyesj 643 41 sample sample NN cord-000248-zueoyesj 643 42 to to IN cord-000248-zueoyesj 643 43 the the DT cord-000248-zueoyesj 643 44 normal normal JJ cord-000248-zueoyesj 643 45 expression expression NN cord-000248-zueoyesj 643 46 profile profile NN cord-000248-zueoyesj 643 47 . . . cord-000248-zueoyesj 644 1 We -PRON- PRP cord-000248-zueoyesj 644 2 have have VBP cord-000248-zueoyesj 644 3 also also RB cord-000248-zueoyesj 644 4 shown show VBN cord-000248-zueoyesj 644 5 if if IN cord-000248-zueoyesj 644 6 an an DT cord-000248-zueoyesj 644 7 average average JJ cord-000248-zueoyesj 644 8 expression expression NN cord-000248-zueoyesj 644 9 profile profile NN cord-000248-zueoyesj 644 10 of of IN cord-000248-zueoyesj 644 11 some some DT cord-000248-zueoyesj 644 12 state state NN cord-000248-zueoyesj 644 13 of of IN cord-000248-zueoyesj 644 14 interest interest NN cord-000248-zueoyesj 644 15 can can MD cord-000248-zueoyesj 644 16 be be VB cord-000248-zueoyesj 644 17 properly properly RB cord-000248-zueoyesj 644 18 defined define VBN cord-000248-zueoyesj 644 19 ( ( -LRB- cord-000248-zueoyesj 644 20 i.e. i.e. FW cord-000248-zueoyesj 644 21 distant distant JJ cord-000248-zueoyesj 644 22 metastasis metastasis NN cord-000248-zueoyesj 644 23 ) ) -RRB- cord-000248-zueoyesj 645 1 then then RB cord-000248-zueoyesj 645 2 the the DT cord-000248-zueoyesj 645 3 Jensen Jensen NNP cord-000248-zueoyesj 645 4 - - HYPH cord-000248-zueoyesj 645 5 Shannon Shannon NNP cord-000248-zueoyesj 645 6 Divergence Divergence NNP cord-000248-zueoyesj 645 7 can can MD cord-000248-zueoyesj 645 8 help help VB cord-000248-zueoyesj 645 9 us -PRON- PRP cord-000248-zueoyesj 645 10 to to TO cord-000248-zueoyesj 645 11 identify identify VB cord-000248-zueoyesj 645 12 which which WDT cord-000248-zueoyesj 645 13 probes probe NNS cord-000248-zueoyesj 645 14 best well RBS cord-000248-zueoyesj 645 15 correlate correlate VB cord-000248-zueoyesj 645 16 with with IN cord-000248-zueoyesj 645 17 these these DT cord-000248-zueoyesj 645 18 measures measure NNS cord-000248-zueoyesj 645 19 resulting result VBG cord-000248-zueoyesj 645 20 in in IN cord-000248-zueoyesj 645 21 useful useful JJ cord-000248-zueoyesj 645 22 biomarkers biomarker NNS cord-000248-zueoyesj 645 23 . . . cord-000248-zueoyesj 646 1 Before before IN cord-000248-zueoyesj 646 2 any any DT cord-000248-zueoyesj 646 3 thermodynamical thermodynamical JJ cord-000248-zueoyesj 646 4 consideration consideration NN cord-000248-zueoyesj 646 5 could could MD cord-000248-zueoyesj 646 6 be be VB cord-000248-zueoyesj 646 7 discussed discuss VBN cord-000248-zueoyesj 646 8 , , , cord-000248-zueoyesj 646 9 we -PRON- PRP cord-000248-zueoyesj 646 10 note note VBP cord-000248-zueoyesj 646 11 that that IN cord-000248-zueoyesj 646 12 there there EX cord-000248-zueoyesj 646 13 is be VBZ cord-000248-zueoyesj 646 14 a a DT cord-000248-zueoyesj 646 15 clear clear JJ cord-000248-zueoyesj 646 16 and and CC cord-000248-zueoyesj 646 17 objective objective JJ cord-000248-zueoyesj 646 18 informational informational JJ cord-000248-zueoyesj 646 19 perspective perspective NN cord-000248-zueoyesj 646 20 that that WDT cord-000248-zueoyesj 646 21 our -PRON- PRP$ cord-000248-zueoyesj 646 22 study study NN cord-000248-zueoyesj 646 23 delivers deliver VBZ cord-000248-zueoyesj 646 24 . . . cord-000248-zueoyesj 647 1 In in IN cord-000248-zueoyesj 647 2 this this DT cord-000248-zueoyesj 647 3 study study NN cord-000248-zueoyesj 647 4 we -PRON- PRP cord-000248-zueoyesj 647 5 have have VBP cord-000248-zueoyesj 647 6 chosen choose VBN cord-000248-zueoyesj 647 7 to to TO cord-000248-zueoyesj 647 8 position position VB cord-000248-zueoyesj 647 9 ourselves -PRON- PRP cord-000248-zueoyesj 647 10 as as IN cord-000248-zueoyesj 647 11 the the DT cord-000248-zueoyesj 647 12 ' ' `` cord-000248-zueoyesj 647 13 receivers receiver NNS cord-000248-zueoyesj 647 14 ' ' POS cord-000248-zueoyesj 647 15 of of IN cord-000248-zueoyesj 647 16 a a DT cord-000248-zueoyesj 647 17 ' ' `` cord-000248-zueoyesj 647 18 transcriptional transcriptional JJ cord-000248-zueoyesj 647 19 message message NN cord-000248-zueoyesj 647 20 ' ' '' cord-000248-zueoyesj 647 21 . . . cord-000248-zueoyesj 648 1 In in IN cord-000248-zueoyesj 648 2 this this DT cord-000248-zueoyesj 648 3 experimental experimental JJ cord-000248-zueoyesj 648 4 perspective perspective NN cord-000248-zueoyesj 648 5 the the DT cord-000248-zueoyesj 648 6 tumor tumor NN cord-000248-zueoyesj 648 7 tissue tissue NN cord-000248-zueoyesj 648 8 is be VBZ cord-000248-zueoyesj 648 9 the the DT cord-000248-zueoyesj 648 10 ' ' `` cord-000248-zueoyesj 648 11 sender sender NN cord-000248-zueoyesj 648 12 ' ' '' cord-000248-zueoyesj 648 13 ( ( -LRB- cord-000248-zueoyesj 648 14 the the DT cord-000248-zueoyesj 648 15 source source NN cord-000248-zueoyesj 648 16 of of IN cord-000248-zueoyesj 648 17 information information NN cord-000248-zueoyesj 648 18 ) ) -RRB- cord-000248-zueoyesj 648 19 and and CC cord-000248-zueoyesj 648 20 the the DT cord-000248-zueoyesj 648 21 high high JJ cord-000248-zueoyesj 648 22 - - HYPH cord-000248-zueoyesj 648 23 throughput throughput NN cord-000248-zueoyesj 648 24 technology technology NN cord-000248-zueoyesj 648 25 ( ( -LRB- cord-000248-zueoyesj 648 26 gene gene NN cord-000248-zueoyesj 648 27 expression expression NN cord-000248-zueoyesj 648 28 microarrays microarray NNS cord-000248-zueoyesj 648 29 in in IN cord-000248-zueoyesj 648 30 this this DT cord-000248-zueoyesj 648 31 case case NN cord-000248-zueoyesj 648 32 ) ) -RRB- cord-000248-zueoyesj 648 33 can can MD cord-000248-zueoyesj 648 34 be be VB cord-000248-zueoyesj 648 35 regarded regard VBN cord-000248-zueoyesj 648 36 as as IN cord-000248-zueoyesj 648 37 the the DT cord-000248-zueoyesj 648 38 transmission transmission NN cord-000248-zueoyesj 648 39 medium medium NN cord-000248-zueoyesj 648 40 ( ( -LRB- cord-000248-zueoyesj 648 41 providing provide VBG cord-000248-zueoyesj 648 42 noise noise NN cord-000248-zueoyesj 648 43 and and CC cord-000248-zueoyesj 648 44 distortion distortion NN cord-000248-zueoyesj 648 45 ) ) -RRB- cord-000248-zueoyesj 648 46 . . . cord-000248-zueoyesj 649 1 As as IN cord-000248-zueoyesj 649 2 we -PRON- PRP cord-000248-zueoyesj 649 3 explain explain VBP cord-000248-zueoyesj 649 4 in in IN cord-000248-zueoyesj 649 5 the the DT cord-000248-zueoyesj 649 6 ' ' `` cord-000248-zueoyesj 649 7 Materials Materials NNPS cord-000248-zueoyesj 649 8 and and CC cord-000248-zueoyesj 649 9 Methods Methods NNPS cord-000248-zueoyesj 649 10 ' ' POS cord-000248-zueoyesj 649 11 section section NN cord-000248-zueoyesj 649 12 , , , cord-000248-zueoyesj 649 13 the the DT cord-000248-zueoyesj 649 14 Shannon Shannon NNP cord-000248-zueoyesj 649 15 Entropy Entropy NNP cord-000248-zueoyesj 649 16 of of IN cord-000248-zueoyesj 649 17 a a DT cord-000248-zueoyesj 649 18 gene gene NN cord-000248-zueoyesj 649 19 expression expression NN cord-000248-zueoyesj 649 20 profile profile NN cord-000248-zueoyesj 649 21 is be VBZ cord-000248-zueoyesj 649 22 the the DT cord-000248-zueoyesj 649 23 average average JJ cord-000248-zueoyesj 649 24 expected expect VBN cord-000248-zueoyesj 649 25 surprisal surprisal NN cord-000248-zueoyesj 649 26 of of IN cord-000248-zueoyesj 649 27 that that DT cord-000248-zueoyesj 649 28 profile profile NN cord-000248-zueoyesj 649 29 understood understand VBD cord-000248-zueoyesj 649 30 as as IN cord-000248-zueoyesj 649 31 a a DT cord-000248-zueoyesj 649 32 message message NN cord-000248-zueoyesj 649 33 . . . cord-000248-zueoyesj 650 1 The the DT cord-000248-zueoyesj 650 2 Normalized Normalized NNP cord-000248-zueoyesj 650 3 Shannon Shannon NNP cord-000248-zueoyesj 650 4 Entropy Entropy NNP cord-000248-zueoyesj 650 5 makes make VBZ cord-000248-zueoyesj 650 6 this this DT cord-000248-zueoyesj 650 7 surprisal surprisal NN cord-000248-zueoyesj 650 8 an an DT cord-000248-zueoyesj 650 9 intensive intensive JJ cord-000248-zueoyesj 650 10 measure measure NN cord-000248-zueoyesj 650 11 and and CC cord-000248-zueoyesj 650 12 the the DT cord-000248-zueoyesj 650 13 correlation correlation NN cord-000248-zueoyesj 650 14 of of IN cord-000248-zueoyesj 650 15 the the DT cord-000248-zueoyesj 650 16 gene gene NN cord-000248-zueoyesj 650 17 expression expression NN cord-000248-zueoyesj 650 18 patterns pattern NNS cord-000248-zueoyesj 650 19 across across IN cord-000248-zueoyesj 650 20 samples sample NNS cord-000248-zueoyesj 650 21 with with IN cord-000248-zueoyesj 650 22 this this DT cord-000248-zueoyesj 650 23 measure measure NN cord-000248-zueoyesj 650 24 can can MD cord-000248-zueoyesj 650 25 deliver deliver VB cord-000248-zueoyesj 650 26 useful useful JJ cord-000248-zueoyesj 650 27 biomarkers biomarker NNS cord-000248-zueoyesj 650 28 to to TO cord-000248-zueoyesj 650 29 track track VB cord-000248-zueoyesj 650 30 the the DT cord-000248-zueoyesj 650 31 progression progression NN cord-000248-zueoyesj 650 32 of of IN cord-000248-zueoyesj 650 33 transcriptional transcriptional JJ cord-000248-zueoyesj 650 34 change change NN cord-000248-zueoyesj 650 35 . . . cord-000248-zueoyesj 651 1 After after IN cord-000248-zueoyesj 651 2 normalization normalization NN cord-000248-zueoyesj 651 3 , , , cord-000248-zueoyesj 651 4 we -PRON- PRP cord-000248-zueoyesj 651 5 have have VBP cord-000248-zueoyesj 651 6 a a DT cord-000248-zueoyesj 651 7 measure measure NN cord-000248-zueoyesj 651 8 that that WDT cord-000248-zueoyesj 651 9 does do VBZ cord-000248-zueoyesj 651 10 not not RB cord-000248-zueoyesj 651 11 depend depend VB cord-000248-zueoyesj 651 12 of of IN cord-000248-zueoyesj 651 13 the the DT cord-000248-zueoyesj 651 14 number number NN cord-000248-zueoyesj 651 15 of of IN cord-000248-zueoyesj 651 16 probes probe NNS cord-000248-zueoyesj 651 17 of of IN cord-000248-zueoyesj 651 18 the the DT cord-000248-zueoyesj 651 19 high high JJ cord-000248-zueoyesj 651 20 - - HYPH cord-000248-zueoyesj 651 21 throughput throughput NN cord-000248-zueoyesj 651 22 technology technology NN cord-000248-zueoyesj 651 23 , , , cord-000248-zueoyesj 651 24 although although RB cord-000248-zueoyesj 651 25 , , , cord-000248-zueoyesj 651 26 it -PRON- PRP cord-000248-zueoyesj 651 27 obviously obviously RB cord-000248-zueoyesj 651 28 does do VBZ cord-000248-zueoyesj 651 29 depend depend VB cord-000248-zueoyesj 651 30 on on IN cord-000248-zueoyesj 651 31 the the DT cord-000248-zueoyesj 651 32 type type NN cord-000248-zueoyesj 651 33 of of IN cord-000248-zueoyesj 651 34 probes probe NNS cord-000248-zueoyesj 651 35 used use VBN cord-000248-zueoyesj 651 36 . . . cord-000248-zueoyesj 652 1 We -PRON- PRP cord-000248-zueoyesj 652 2 believe believe VBP cord-000248-zueoyesj 652 3 that that IN cord-000248-zueoyesj 652 4 the the DT cord-000248-zueoyesj 652 5 readers reader NNS cord-000248-zueoyesj 652 6 may may MD cord-000248-zueoyesj 652 7 have have VB cord-000248-zueoyesj 652 8 already already RB cord-000248-zueoyesj 652 9 noticed notice VBN cord-000248-zueoyesj 652 10 an an DT cord-000248-zueoyesj 652 11 apparent apparent JJ cord-000248-zueoyesj 652 12 paradox paradox NN cord-000248-zueoyesj 652 13 . . . cord-000248-zueoyesj 653 1 While while IN cord-000248-zueoyesj 653 2 some some DT cord-000248-zueoyesj 653 3 researchers researcher NNS cord-000248-zueoyesj 653 4 understand understand VBP cord-000248-zueoyesj 653 5 cancer cancer NN cord-000248-zueoyesj 653 6 progression progression NN cord-000248-zueoyesj 653 7 as as IN cord-000248-zueoyesj 653 8 a a DT cord-000248-zueoyesj 653 9 mechanism mechanism NN cord-000248-zueoyesj 653 10 that that WDT cord-000248-zueoyesj 653 11 increases increase VBZ cord-000248-zueoyesj 653 12 entropy entropy NN cord-000248-zueoyesj 653 13 , , , cord-000248-zueoyesj 653 14 we -PRON- PRP cord-000248-zueoyesj 653 15 actually actually RB cord-000248-zueoyesj 653 16 observe observe VBP cord-000248-zueoyesj 653 17 a a DT cord-000248-zueoyesj 653 18 reduction reduction NN cord-000248-zueoyesj 653 19 of of IN cord-000248-zueoyesj 653 20 Normalized Normalized NNP cord-000248-zueoyesj 653 21 Shannon Shannon NNP cord-000248-zueoyesj 653 22 Entropy Entropy NNP cord-000248-zueoyesj 653 23 in in IN cord-000248-zueoyesj 653 24 this this DT cord-000248-zueoyesj 653 25 work work NN cord-000248-zueoyesj 653 26 . . . cord-000248-zueoyesj 654 1 This this DT cord-000248-zueoyesj 654 2 means mean VBZ cord-000248-zueoyesj 654 3 that that IN cord-000248-zueoyesj 654 4 our -PRON- PRP$ cord-000248-zueoyesj 654 5 normalized normalized JJ cord-000248-zueoyesj 654 6 average average NN cord-000248-zueoyesj 654 7 expected expect VBN cord-000248-zueoyesj 654 8 surprisal surprisal NNP cord-000248-zueoyesj 654 9 , , , cord-000248-zueoyesj 654 10 as as IN cord-000248-zueoyesj 654 11 receivers receiver NNS cord-000248-zueoyesj 654 12 of of IN cord-000248-zueoyesj 654 13 the the DT cord-000248-zueoyesj 654 14 transcriptional transcriptional JJ cord-000248-zueoyesj 654 15 message message NN cord-000248-zueoyesj 654 16 , , , cord-000248-zueoyesj 654 17 is be VBZ cord-000248-zueoyesj 654 18 smaller small JJR cord-000248-zueoyesj 654 19 . . . cord-000248-zueoyesj 655 1 We -PRON- PRP cord-000248-zueoyesj 655 2 must must MD cord-000248-zueoyesj 655 3 then then RB cord-000248-zueoyesj 655 4 discuss discuss VB cord-000248-zueoyesj 655 5 the the DT cord-000248-zueoyesj 655 6 physical physical JJ cord-000248-zueoyesj 655 7 meaning meaning NN cord-000248-zueoyesj 655 8 of of IN cord-000248-zueoyesj 655 9 thermodynamic thermodynamic JJ cord-000248-zueoyesj 655 10 entropy entropy NN cord-000248-zueoyesj 655 11 , , , cord-000248-zueoyesj 655 12 its -PRON- PRP$ cord-000248-zueoyesj 655 13 current current JJ cord-000248-zueoyesj 655 14 use use NN cord-000248-zueoyesj 655 15 in in IN cord-000248-zueoyesj 655 16 systems system NNS cord-000248-zueoyesj 655 17 biology biology NN cord-000248-zueoyesj 655 18 and and CC cord-000248-zueoyesj 655 19 cancer cancer NN cord-000248-zueoyesj 655 20 research research NN cord-000248-zueoyesj 655 21 genetics genetic NNS cord-000248-zueoyesj 655 22 and and CC cord-000248-zueoyesj 655 23 the the DT cord-000248-zueoyesj 655 24 informational informational JJ cord-000248-zueoyesj 655 25 measure measure NN cord-000248-zueoyesj 655 26 we -PRON- PRP cord-000248-zueoyesj 655 27 use use VBP cord-000248-zueoyesj 655 28 in in IN cord-000248-zueoyesj 655 29 this this DT cord-000248-zueoyesj 655 30 paper paper NN cord-000248-zueoyesj 655 31 to to TO cord-000248-zueoyesj 655 32 clarify clarify VB cord-000248-zueoyesj 655 33 these these DT cord-000248-zueoyesj 655 34 notions notion NNS cord-000248-zueoyesj 655 35 in in IN cord-000248-zueoyesj 655 36 this this DT cord-000248-zueoyesj 655 37 context context NN cord-000248-zueoyesj 655 38 . . . cord-000248-zueoyesj 656 1 In in IN cord-000248-zueoyesj 656 2 biomedical biomedical JJ cord-000248-zueoyesj 656 3 research research NN cord-000248-zueoyesj 656 4 there there EX cord-000248-zueoyesj 656 5 exists exist VBZ cord-000248-zueoyesj 656 6 a a DT cord-000248-zueoyesj 656 7 certain certain JJ cord-000248-zueoyesj 656 8 consensus consensus NN cord-000248-zueoyesj 656 9 among among IN cord-000248-zueoyesj 656 10 cancer cancer NN cord-000248-zueoyesj 656 11 researchers researcher NNS cord-000248-zueoyesj 656 12 that that IN cord-000248-zueoyesj 656 13 genetic genetic JJ cord-000248-zueoyesj 656 14 instability instability NN cord-000248-zueoyesj 656 15 or or CC cord-000248-zueoyesj 656 16 ' ' '' cord-000248-zueoyesj 656 17 ' ' `` cord-000248-zueoyesj 656 18 mutability mutability NN cord-000248-zueoyesj 656 19 ' ' '' cord-000248-zueoyesj 656 20 ' ' '' cord-000248-zueoyesj 656 21 is be VBZ cord-000248-zueoyesj 656 22 a a DT cord-000248-zueoyesj 656 23 major major JJ cord-000248-zueoyesj 656 24 critical critical JJ cord-000248-zueoyesj 656 25 force force NN cord-000248-zueoyesj 656 26 of of IN cord-000248-zueoyesj 656 27 cancer cancer NN cord-000248-zueoyesj 656 28 progression progression NN cord-000248-zueoyesj 656 29 , , , cord-000248-zueoyesj 656 30 but but CC cord-000248-zueoyesj 656 31 it -PRON- PRP cord-000248-zueoyesj 656 32 is be VBZ cord-000248-zueoyesj 656 33 not not RB cord-000248-zueoyesj 656 34 the the DT cord-000248-zueoyesj 656 35 only only JJ cord-000248-zueoyesj 656 36 one one CD cord-000248-zueoyesj 656 37 to to TO cord-000248-zueoyesj 656 38 consider consider VB cord-000248-zueoyesj 656 39 . . . cord-000248-zueoyesj 657 1 It -PRON- PRP cord-000248-zueoyesj 657 2 is be VBZ cord-000248-zueoyesj 657 3 clear clear JJ cord-000248-zueoyesj 657 4 that that IN cord-000248-zueoyesj 657 5 the the DT cord-000248-zueoyesj 657 6 mutational mutational JJ cord-000248-zueoyesj 657 7 damage damage NN cord-000248-zueoyesj 657 8 of of IN cord-000248-zueoyesj 657 9 key key JJ cord-000248-zueoyesj 657 10 genes gene NNS cord-000248-zueoyesj 657 11 ( ( -LRB- cord-000248-zueoyesj 657 12 like like IN cord-000248-zueoyesj 657 13 TP53 TP53 NNP cord-000248-zueoyesj 657 14 , , , cord-000248-zueoyesj 657 15 TERT TERT NNP cord-000248-zueoyesj 657 16 , , , cord-000248-zueoyesj 657 17 BRCA1 BRCA1 NNP cord-000248-zueoyesj 657 18 , , , cord-000248-zueoyesj 657 19 RB1 RB1 NNP cord-000248-zueoyesj 657 20 , , , cord-000248-zueoyesj 657 21 etc etc FW cord-000248-zueoyesj 657 22 . . . cord-000248-zueoyesj 657 23 ) ) -RRB- cord-000248-zueoyesj 657 24 , , , cord-000248-zueoyesj 657 25 and and CC cord-000248-zueoyesj 657 26 the the DT cord-000248-zueoyesj 657 27 collective collective JJ cord-000248-zueoyesj 657 28 damage damage NN cord-000248-zueoyesj 657 29 inflicted inflict VBN cord-000248-zueoyesj 657 30 on on IN cord-000248-zueoyesj 657 31 key key JJ cord-000248-zueoyesj 657 32 DNA dna NN cord-000248-zueoyesj 657 33 repair repair NN cord-000248-zueoyesj 657 34 mechanisms mechanism NNS cord-000248-zueoyesj 657 35 ( ( -LRB- cord-000248-zueoyesj 657 36 like like IN cord-000248-zueoyesj 657 37 Nucleotide nucleotide NN cord-000248-zueoyesj 657 38 - - HYPH cord-000248-zueoyesj 657 39 excision excision NN cord-000248-zueoyesj 657 40 repair repair NN cord-000248-zueoyesj 657 41 and and CC cord-000248-zueoyesj 657 42 Base base NN cord-000248-zueoyesj 657 43 - - HYPH cord-000248-zueoyesj 657 44 excision excision NN cord-000248-zueoyesj 657 45 repair repair NN cord-000248-zueoyesj 657 46 ) ) -RRB- cord-000248-zueoyesj 657 47 collaborate collaborate VBP cord-000248-zueoyesj 657 48 for for IN cord-000248-zueoyesj 657 49 an an DT cord-000248-zueoyesj 657 50 increasing increase VBG cord-000248-zueoyesj 657 51 acceleration acceleration NN cord-000248-zueoyesj 657 52 of of IN cord-000248-zueoyesj 657 53 the the DT cord-000248-zueoyesj 657 54 number number NN cord-000248-zueoyesj 657 55 of of IN cord-000248-zueoyesj 657 56 genomic genomic JJ cord-000248-zueoyesj 657 57 changes change NNS cord-000248-zueoyesj 657 58 . . . cord-000248-zueoyesj 658 1 Sub sub JJ cord-000248-zueoyesj 658 2 - - HYPH cord-000248-zueoyesj 658 3 microscopic microscopic JJ cord-000248-zueoyesj 658 4 alterations alteration NNS cord-000248-zueoyesj 658 5 of of IN cord-000248-zueoyesj 658 6 the the DT cord-000248-zueoyesj 658 7 genome genome NN cord-000248-zueoyesj 658 8 accumulate accumulate VBP cord-000248-zueoyesj 658 9 in in IN cord-000248-zueoyesj 658 10 cancer cancer NN cord-000248-zueoyesj 658 11 progression progression NN cord-000248-zueoyesj 658 12 in in IN cord-000248-zueoyesj 658 13 an an DT cord-000248-zueoyesj 658 14 irreversible irreversible JJ cord-000248-zueoyesj 658 15 way way NN cord-000248-zueoyesj 658 16 and and CC cord-000248-zueoyesj 658 17 ' ' '' cord-000248-zueoyesj 658 18 ' ' '' cord-000248-zueoyesj 658 19 are be VBP cord-000248-zueoyesj 658 20 compounded compound VBN cord-000248-zueoyesj 658 21 by by IN cord-000248-zueoyesj 658 22 the the DT cord-000248-zueoyesj 658 23 widespread widespread JJ cord-000248-zueoyesj 658 24 scrambling scrambling NN cord-000248-zueoyesj 658 25 of of IN cord-000248-zueoyesj 658 26 the the DT cord-000248-zueoyesj 658 27 chromosome chromosome NN cord-000248-zueoyesj 658 28 structure structure NN cord-000248-zueoyesj 658 29 , , , cord-000248-zueoyesj 658 30 and and CC cord-000248-zueoyesj 658 31 thus thus RB cord-000248-zueoyesj 658 32 the the DT cord-000248-zueoyesj 658 33 karyotype karyotype NN cord-000248-zueoyesj 658 34 , , , cord-000248-zueoyesj 658 35 found find VBN cord-000248-zueoyesj 658 36 in in IN cord-000248-zueoyesj 658 37 cells cell NNS cord-000248-zueoyesj 658 38 from from IN cord-000248-zueoyesj 658 39 the the DT cord-000248-zueoyesj 658 40 great great JJ cord-000248-zueoyesj 658 41 majority majority NN cord-000248-zueoyesj 658 42 of of IN cord-000248-zueoyesj 658 43 solid solid JJ cord-000248-zueoyesj 658 44 tumours tumour NNS cord-000248-zueoyesj 658 45 ' ' POS cord-000248-zueoyesj 658 46 ' ' '' cord-000248-zueoyesj 658 47 [ [ -LRB- cord-000248-zueoyesj 658 48 599 599 CD cord-000248-zueoyesj 658 49 ] ] -RRB- cord-000248-zueoyesj 658 50 . . . cord-000248-zueoyesj 659 1 In in IN cord-000248-zueoyesj 659 2 Weinberg Weinberg NNP cord-000248-zueoyesj 659 3 's 's POS cord-000248-zueoyesj 659 4 own own JJ cord-000248-zueoyesj 659 5 words word NNS cord-000248-zueoyesj 659 6 [ [ -LRB- cord-000248-zueoyesj 659 7 599 599 CD cord-000248-zueoyesj 659 8 ] ] -RRB- cord-000248-zueoyesj 659 9 : : : cord-000248-zueoyesj 659 10 ' ' '' cord-000248-zueoyesj 659 11 ' ' '' cord-000248-zueoyesj 659 12 we -PRON- PRP cord-000248-zueoyesj 659 13 learned learn VBD cord-000248-zueoyesj 659 14 that that IN cord-000248-zueoyesj 659 15 this this DT cord-000248-zueoyesj 659 16 chromosomal chromosomal JJ cord-000248-zueoyesj 659 17 chaos chaos NN cord-000248-zueoyesj 659 18 also also RB cord-000248-zueoyesj 659 19 contributes contribute VBZ cord-000248-zueoyesj 659 20 this this DT cord-000248-zueoyesj 659 21 progression progression NN cord-000248-zueoyesj 659 22 forward forward RB cord-000248-zueoyesj 659 23 ' ' '' cord-000248-zueoyesj 659 24 ' ' '' cord-000248-zueoyesj 659 25 . . . cord-000248-zueoyesj 660 1 This this DT cord-000248-zueoyesj 660 2 ' ' `` cord-000248-zueoyesj 660 3 ' ' `` cord-000248-zueoyesj 660 4 chromosomal chromosomal JJ cord-000248-zueoyesj 660 5 chaos chaos NN cord-000248-zueoyesj 660 6 ' ' '' cord-000248-zueoyesj 660 7 ' ' '' cord-000248-zueoyesj 660 8 [ [ -LRB- cord-000248-zueoyesj 660 9 600 600 CD cord-000248-zueoyesj 660 10 ] ] -RRB- cord-000248-zueoyesj 660 11 or or CC cord-000248-zueoyesj 660 12 ' ' '' cord-000248-zueoyesj 660 13 ' ' '' cord-000248-zueoyesj 660 14 cancer cancer NN cord-000248-zueoyesj 660 15 as as IN cord-000248-zueoyesj 660 16 a a DT cord-000248-zueoyesj 660 17 chromosomal chromosomal JJ cord-000248-zueoyesj 660 18 disease disease NN cord-000248-zueoyesj 660 19 ' ' '' cord-000248-zueoyesj 660 20 ' ' '' cord-000248-zueoyesj 660 21 perspective perspective NN cord-000248-zueoyesj 660 22 is be VBZ cord-000248-zueoyesj 660 23 viewed view VBN cord-000248-zueoyesj 660 24 by by IN cord-000248-zueoyesj 660 25 some some DT cord-000248-zueoyesj 660 26 researchers researcher NNS cord-000248-zueoyesj 660 27 not not RB cord-000248-zueoyesj 660 28 as as IN cord-000248-zueoyesj 660 29 just just RB cord-000248-zueoyesj 660 30 a a DT cord-000248-zueoyesj 660 31 side side JJ cord-000248-zueoyesj 660 32 consequence consequence NN cord-000248-zueoyesj 660 33 of of IN cord-000248-zueoyesj 660 34 mutational mutational JJ cord-000248-zueoyesj 660 35 damage damage NN cord-000248-zueoyesj 660 36 , , , cord-000248-zueoyesj 660 37 but but CC cord-000248-zueoyesj 660 38 as as IN cord-000248-zueoyesj 660 39 the the DT cord-000248-zueoyesj 660 40 main main JJ cord-000248-zueoyesj 660 41 core core NN cord-000248-zueoyesj 660 42 theme theme NN cord-000248-zueoyesj 660 43 to to TO cord-000248-zueoyesj 660 44 understand understand VB cord-000248-zueoyesj 660 45 a a DT cord-000248-zueoyesj 660 46 number number NN cord-000248-zueoyesj 660 47 of of IN cord-000248-zueoyesj 660 48 unexplained unexplained JJ cord-000248-zueoyesj 660 49 issues issue NNS cord-000248-zueoyesj 660 50 in in IN cord-000248-zueoyesj 660 51 cancer cancer NN cord-000248-zueoyesj 660 52 progression progression NN cord-000248-zueoyesj 660 53 . . . cord-000248-zueoyesj 660 54 '' '' '' cord-000248-zueoyesj 661 1 In in IN cord-000248-zueoyesj 661 2 sum sum NN cord-000248-zueoyesj 661 3 , , , cord-000248-zueoyesj 661 4 cancer cancer NN cord-000248-zueoyesj 661 5 is be VBZ cord-000248-zueoyesj 661 6 caused cause VBN cord-000248-zueoyesj 661 7 by by IN cord-000248-zueoyesj 661 8 chromosomal chromosomal JJ cord-000248-zueoyesj 661 9 disorganization disorganization NN cord-000248-zueoyesj 661 10 , , , cord-000248-zueoyesj 661 11 which which WDT cord-000248-zueoyesj 661 12 increases increase VBZ cord-000248-zueoyesj 661 13 karyotypic karyotypic NNP cord-000248-zueoyesj 661 14 entropy entropy NNP cord-000248-zueoyesj 661 15 ' ' '' cord-000248-zueoyesj 661 16 ' ' '' cord-000248-zueoyesj 662 1 [ [ -LRB- cord-000248-zueoyesj 662 2 601 601 CD cord-000248-zueoyesj 662 3 ] ] -RRB- cord-000248-zueoyesj 662 4 . . . cord-000248-zueoyesj 663 1 Regarding regard VBG cord-000248-zueoyesj 663 2 the the DT cord-000248-zueoyesj 663 3 cancer cancer NN cord-000248-zueoyesj 663 4 types type NNS cord-000248-zueoyesj 663 5 studied study VBN cord-000248-zueoyesj 663 6 in in IN cord-000248-zueoyesj 663 7 this this DT cord-000248-zueoyesj 663 8 paper paper NN cord-000248-zueoyesj 663 9 , , , cord-000248-zueoyesj 663 10 one one CD cord-000248-zueoyesj 663 11 particular particular JJ cord-000248-zueoyesj 663 12 ' ' '' cord-000248-zueoyesj 663 13 ' ' `` cord-000248-zueoyesj 663 14 measure measure NN cord-000248-zueoyesj 663 15 of of IN cord-000248-zueoyesj 663 16 disorder disorder NN cord-000248-zueoyesj 663 17 of of IN cord-000248-zueoyesj 663 18 a a DT cord-000248-zueoyesj 663 19 system system NN cord-000248-zueoyesj 663 20 ' ' '' cord-000248-zueoyesj 663 21 ' ' '' cord-000248-zueoyesj 663 22 , , , cord-000248-zueoyesj 663 23 aneuploidy aneuploidy NN cord-000248-zueoyesj 663 24 , , , cord-000248-zueoyesj 663 25 has have VBZ cord-000248-zueoyesj 663 26 been be VBN cord-000248-zueoyesj 663 27 observed observe VBN cord-000248-zueoyesj 663 28 in in IN cord-000248-zueoyesj 663 29 poorly poorly RB cord-000248-zueoyesj 663 30 - - HYPH cord-000248-zueoyesj 663 31 differentiated differentiate VBN cord-000248-zueoyesj 663 32 prostate prostate NN cord-000248-zueoyesj 663 33 cancer cancer NN cord-000248-zueoyesj 663 34 cells cell NNS cord-000248-zueoyesj 663 35 and and CC cord-000248-zueoyesj 663 36 it -PRON- PRP cord-000248-zueoyesj 663 37 is be VBZ cord-000248-zueoyesj 663 38 often often RB cord-000248-zueoyesj 663 39 associated associate VBN cord-000248-zueoyesj 663 40 with with IN cord-000248-zueoyesj 663 41 a a DT cord-000248-zueoyesj 663 42 more more RBR cord-000248-zueoyesj 663 43 agreessive agreessive JJ cord-000248-zueoyesj 663 44 phenotype phenotype NN cord-000248-zueoyesj 663 45 [ [ -LRB- cord-000248-zueoyesj 663 46 602 602 CD cord-000248-zueoyesj 663 47 , , , cord-000248-zueoyesj 663 48 603 603 CD cord-000248-zueoyesj 663 49 ] ] -RRB- cord-000248-zueoyesj 663 50 , , , cord-000248-zueoyesj 663 51 increased increase VBD cord-000248-zueoyesj 663 52 PSA PSA NNP cord-000248-zueoyesj 663 53 levels level NNS cord-000248-zueoyesj 663 54 [ [ -LRB- cord-000248-zueoyesj 663 55 604 604 CD cord-000248-zueoyesj 663 56 , , , cord-000248-zueoyesj 663 57 605 605 CD cord-000248-zueoyesj 663 58 ] ] -RRB- cord-000248-zueoyesj 663 59 , , , cord-000248-zueoyesj 663 60 and and CC cord-000248-zueoyesj 663 61 correlate correlate VB cord-000248-zueoyesj 663 62 with with IN cord-000248-zueoyesj 663 63 Gleason Gleason NNP cord-000248-zueoyesj 663 64 score score NN cord-000248-zueoyesj 663 65 [ [ -LRB- cord-000248-zueoyesj 663 66 606 606 CD cord-000248-zueoyesj 663 67 , , , cord-000248-zueoyesj 663 68 607 607 CD cord-000248-zueoyesj 663 69 , , , cord-000248-zueoyesj 663 70 608 608 CD cord-000248-zueoyesj 663 71 ] ] -RRB- cord-000248-zueoyesj 663 72 . . . cord-000248-zueoyesj 664 1 Gene gene NN cord-000248-zueoyesj 664 2 fusions fusion NNS cord-000248-zueoyesj 664 3 and and CC cord-000248-zueoyesj 664 4 chromosomal chromosomal JJ cord-000248-zueoyesj 664 5 rearrangements rearrangement NNS cord-000248-zueoyesj 664 6 are be VBP cord-000248-zueoyesj 664 7 other other JJ cord-000248-zueoyesj 664 8 source source NN cord-000248-zueoyesj 664 9 of of IN cord-000248-zueoyesj 664 10 increase increase NN cord-000248-zueoyesj 664 11 in in IN cord-000248-zueoyesj 664 12 the the DT cord-000248-zueoyesj 664 13 ' ' '' cord-000248-zueoyesj 664 14 ' ' `` cord-000248-zueoyesj 664 15 disorder disorder NN cord-000248-zueoyesj 664 16 ' ' '' cord-000248-zueoyesj 664 17 ' ' '' cord-000248-zueoyesj 664 18 of of IN cord-000248-zueoyesj 664 19 the the DT cord-000248-zueoyesj 664 20 genome genome NN cord-000248-zueoyesj 664 21 organization organization NN cord-000248-zueoyesj 664 22 and and CC cord-000248-zueoyesj 664 23 they -PRON- PRP cord-000248-zueoyesj 664 24 are be VBP cord-000248-zueoyesj 664 25 increasingly increasingly RB cord-000248-zueoyesj 664 26 being be VBG cord-000248-zueoyesj 664 27 recognized recognize VBN cord-000248-zueoyesj 664 28 as as IN cord-000248-zueoyesj 664 29 a a DT cord-000248-zueoyesj 664 30 major major JJ cord-000248-zueoyesj 664 31 player player NN cord-000248-zueoyesj 664 32 in in IN cord-000248-zueoyesj 664 33 prostate prostate NN cord-000248-zueoyesj 664 34 cancer cancer NN cord-000248-zueoyesj 664 35 progression progression NN cord-000248-zueoyesj 664 36 [ [ -LRB- cord-000248-zueoyesj 664 37 609 609 CD cord-000248-zueoyesj 664 38 ] ] -RRB- cord-000248-zueoyesj 664 39 . . . cord-000248-zueoyesj 665 1 The the DT cord-000248-zueoyesj 665 2 increase increase NN cord-000248-zueoyesj 665 3 in in IN cord-000248-zueoyesj 665 4 ' ' '' cord-000248-zueoyesj 665 5 ' ' `` cord-000248-zueoyesj 665 6 karyotypic karyotypic NNP cord-000248-zueoyesj 665 7 complexity complexity NN cord-000248-zueoyesj 665 8 ' ' '' cord-000248-zueoyesj 665 9 ' ' '' cord-000248-zueoyesj 665 10 and and CC cord-000248-zueoyesj 665 11 ' ' '' cord-000248-zueoyesj 665 12 ' ' '' cord-000248-zueoyesj 665 13 extended extended JJ cord-000248-zueoyesj 665 14 aneuploidy aneuploidy NN cord-000248-zueoyesj 665 15 and and CC cord-000248-zueoyesj 665 16 heteroploidy heteroploidy NNP cord-000248-zueoyesj 665 17 ' ' '' cord-000248-zueoyesj 665 18 ' ' '' cord-000248-zueoyesj 665 19 may may MD cord-000248-zueoyesj 665 20 be be VB cord-000248-zueoyesj 665 21 already already RB cord-000248-zueoyesj 665 22 enough enough JJ cord-000248-zueoyesj 665 23 to to TO cord-000248-zueoyesj 665 24 develop develop VB cord-000248-zueoyesj 665 25 a a DT cord-000248-zueoyesj 665 26 malignant malignant JJ cord-000248-zueoyesj 665 27 melanoma melanoma NN cord-000248-zueoyesj 665 28 phenotype phenotype NN cord-000248-zueoyesj 665 29 , , , cord-000248-zueoyesj 665 30 as as IN cord-000248-zueoyesj 665 31 the the DT cord-000248-zueoyesj 665 32 report report NN cord-000248-zueoyesj 665 33 of of IN cord-000248-zueoyesj 665 34 Gagos Gagos NNP cord-000248-zueoyesj 665 35 et et NNP cord-000248-zueoyesj 665 36 al al NNP cord-000248-zueoyesj 665 37 . . . cord-000248-zueoyesj 666 1 indicate indicate VBP cord-000248-zueoyesj 666 2 [ [ -LRB- cord-000248-zueoyesj 666 3 610 610 CD cord-000248-zueoyesj 666 4 ] ] -RRB- cord-000248-zueoyesj 666 5 . . . cord-000248-zueoyesj 667 1 The the DT cord-000248-zueoyesj 667 2 observed observed JJ cord-000248-zueoyesj 667 3 finding finding NN cord-000248-zueoyesj 667 4 of of IN cord-000248-zueoyesj 667 5 aneuploidy aneuploidy NN cord-000248-zueoyesj 667 6 in in IN cord-000248-zueoyesj 667 7 melanoma melanoma NN cord-000248-zueoyesj 667 8 ( ( -LRB- cord-000248-zueoyesj 667 9 also also RB cord-000248-zueoyesj 667 10 including include VBG cord-000248-zueoyesj 667 11 uveal uveal JJ cord-000248-zueoyesj 667 12 melanoma melanoma NN cord-000248-zueoyesj 667 13 ) ) -RRB- cord-000248-zueoyesj 667 14 is be VBZ cord-000248-zueoyesj 667 15 also also RB cord-000248-zueoyesj 667 16 increasingly increasingly RB cord-000248-zueoyesj 667 17 important important JJ cord-000248-zueoyesj 667 18 due due IN cord-000248-zueoyesj 667 19 to to IN cord-000248-zueoyesj 667 20 a a DT cord-000248-zueoyesj 667 21 number number NN cord-000248-zueoyesj 667 22 of of IN cord-000248-zueoyesj 667 23 different different JJ cord-000248-zueoyesj 667 24 independent independent JJ cord-000248-zueoyesj 667 25 observations observation NNS cord-000248-zueoyesj 667 26 [ [ -LRB- cord-000248-zueoyesj 667 27 247 247 CD cord-000248-zueoyesj 667 28 , , , cord-000248-zueoyesj 667 29 611 611 CD cord-000248-zueoyesj 667 30 , , , cord-000248-zueoyesj 667 31 612 612 CD cord-000248-zueoyesj 667 32 , , , cord-000248-zueoyesj 667 33 613 613 CD cord-000248-zueoyesj 667 34 , , , cord-000248-zueoyesj 667 35 614 614 CD cord-000248-zueoyesj 667 36 , , , cord-000248-zueoyesj 667 37 615 615 CD cord-000248-zueoyesj 667 38 , , , cord-000248-zueoyesj 667 39 616 616 CD cord-000248-zueoyesj 667 40 , , , cord-000248-zueoyesj 667 41 617 617 CD cord-000248-zueoyesj 667 42 , , , cord-000248-zueoyesj 667 43 618 618 CD cord-000248-zueoyesj 667 44 ] ] -RRB- cord-000248-zueoyesj 667 45 . . . cord-000248-zueoyesj 668 1 It -PRON- PRP cord-000248-zueoyesj 668 2 is be VBZ cord-000248-zueoyesj 668 3 in in IN cord-000248-zueoyesj 668 4 this this DT cord-000248-zueoyesj 668 5 context context NN cord-000248-zueoyesj 668 6 that that IN cord-000248-zueoyesj 668 7 the the DT cord-000248-zueoyesj 668 8 word word NN cord-000248-zueoyesj 668 9 ' ' `` cord-000248-zueoyesj 668 10 entropy entropy NN cord-000248-zueoyesj 668 11 ' ' '' cord-000248-zueoyesj 668 12 has have VBZ cord-000248-zueoyesj 668 13 been be VBN cord-000248-zueoyesj 668 14 used use VBN cord-000248-zueoyesj 668 15 . . . cord-000248-zueoyesj 669 1 The the DT cord-000248-zueoyesj 669 2 magnitude magnitude NN cord-000248-zueoyesj 669 3 of of IN cord-000248-zueoyesj 669 4 the the DT cord-000248-zueoyesj 669 5 ' ' `` cord-000248-zueoyesj 669 6 ' ' `` cord-000248-zueoyesj 669 7 chromosomal chromosomal JJ cord-000248-zueoyesj 669 8 chaos chaos NN cord-000248-zueoyesj 669 9 ' ' '' cord-000248-zueoyesj 669 10 ' ' '' cord-000248-zueoyesj 669 11 is be VBZ cord-000248-zueoyesj 669 12 also also RB cord-000248-zueoyesj 669 13 evident evident JJ cord-000248-zueoyesj 669 14 from from IN cord-000248-zueoyesj 669 15 comparative comparative JJ cord-000248-zueoyesj 669 16 genomic genomic JJ cord-000248-zueoyesj 669 17 hybridization hybridization NN cord-000248-zueoyesj 669 18 ( ( -LRB- cord-000248-zueoyesj 669 19 CGH CGH NNP cord-000248-zueoyesj 669 20 ) ) -RRB- cord-000248-zueoyesj 669 21 studies study NNS cord-000248-zueoyesj 669 22 which which WDT cord-000248-zueoyesj 669 23 show show VBP cord-000248-zueoyesj 669 24 significant significant JJ cord-000248-zueoyesj 669 25 variations variation NNS cord-000248-zueoyesj 669 26 in in IN cord-000248-zueoyesj 669 27 the the DT cord-000248-zueoyesj 669 28 copy copy NN cord-000248-zueoyesj 669 29 number number NN cord-000248-zueoyesj 669 30 of of IN cord-000248-zueoyesj 669 31 individual individual JJ cord-000248-zueoyesj 669 32 chromosomal chromosomal JJ cord-000248-zueoyesj 669 33 segments segment NNS cord-000248-zueoyesj 669 34 . . . cord-000248-zueoyesj 669 35 ' ' '' cord-000248-zueoyesj 670 1 Chaos chaos NN cord-000248-zueoyesj 670 2 ' ' '' cord-000248-zueoyesj 670 3 is be VBZ cord-000248-zueoyesj 670 4 really really RB cord-000248-zueoyesj 670 5 a a DT cord-000248-zueoyesj 670 6 very very RB cord-000248-zueoyesj 670 7 appropriate appropriate JJ cord-000248-zueoyesj 670 8 word word NN cord-000248-zueoyesj 670 9 to to TO cord-000248-zueoyesj 670 10 describe describe VB cord-000248-zueoyesj 670 11 what what WP cord-000248-zueoyesj 670 12 we -PRON- PRP cord-000248-zueoyesj 670 13 observe observe VBP cord-000248-zueoyesj 670 14 from from IN cord-000248-zueoyesj 670 15 CGH CGH NNP cord-000248-zueoyesj 670 16 data datum NNS cord-000248-zueoyesj 670 17 . . . cord-000248-zueoyesj 671 1 The the DT cord-000248-zueoyesj 671 2 genomic genomic JJ cord-000248-zueoyesj 671 3 changes change NNS cord-000248-zueoyesj 671 4 are be VBP cord-000248-zueoyesj 671 5 not not RB cord-000248-zueoyesj 671 6 distributed distribute VBN cord-000248-zueoyesj 671 7 uniformly uniformly RB cord-000248-zueoyesj 671 8 at at IN cord-000248-zueoyesj 671 9 random random JJ cord-000248-zueoyesj 671 10 . . . cord-000248-zueoyesj 671 11 ' ' '' cord-000248-zueoyesj 672 1 Chaos chaos NN cord-000248-zueoyesj 672 2 ' ' '' cord-000248-zueoyesj 672 3 has have VBZ cord-000248-zueoyesj 672 4 been be VBN cord-000248-zueoyesj 672 5 described describe VBN cord-000248-zueoyesj 672 6 by by IN cord-000248-zueoyesj 672 7 some some DT cord-000248-zueoyesj 672 8 researchers researcher NNS cord-000248-zueoyesj 672 9 as as IN cord-000248-zueoyesj 672 10 ' ' '' cord-000248-zueoyesj 672 11 ' ' '' cord-000248-zueoyesj 672 12 a a DT cord-000248-zueoyesj 672 13 kind kind NN cord-000248-zueoyesj 672 14 of of IN cord-000248-zueoyesj 672 15 order order NN cord-000248-zueoyesj 672 16 without without IN cord-000248-zueoyesj 672 17 any any DT cord-000248-zueoyesj 672 18 periodicity periodicity NN cord-000248-zueoyesj 672 19 ' ' '' cord-000248-zueoyesj 672 20 ' ' '' cord-000248-zueoyesj 672 21 . . . cord-000248-zueoyesj 673 1 Some some DT cord-000248-zueoyesj 673 2 common common JJ cord-000248-zueoyesj 673 3 changes change NNS cord-000248-zueoyesj 673 4 seem seem VBP cord-000248-zueoyesj 673 5 to to TO cord-000248-zueoyesj 673 6 consistently consistently RB cord-000248-zueoyesj 673 7 appear appear VB cord-000248-zueoyesj 673 8 in in IN cord-000248-zueoyesj 673 9 several several JJ cord-000248-zueoyesj 673 10 independently independently RB cord-000248-zueoyesj 673 11 arising arise VBG cord-000248-zueoyesj 673 12 tumours tumour NNS cord-000248-zueoyesj 673 13 of of IN cord-000248-zueoyesj 673 14 the the DT cord-000248-zueoyesj 673 15 same same JJ cord-000248-zueoyesj 673 16 type type NN cord-000248-zueoyesj 673 17 , , , cord-000248-zueoyesj 673 18 and and CC cord-000248-zueoyesj 673 19 sometimes sometimes RB cord-000248-zueoyesj 673 20 the the DT cord-000248-zueoyesj 673 21 researchers researcher NNS cord-000248-zueoyesj 673 22 suggest suggest VBP cord-000248-zueoyesj 673 23 common common JJ cord-000248-zueoyesj 673 24 links link NNS cord-000248-zueoyesj 673 25 [ [ -LRB- cord-000248-zueoyesj 673 26 619 619 CD cord-000248-zueoyesj 673 27 ] ] -RRB- cord-000248-zueoyesj 673 28 . . . cord-000248-zueoyesj 674 1 Our -PRON- PRP$ cord-000248-zueoyesj 674 2 work work NN cord-000248-zueoyesj 674 3 has have VBZ cord-000248-zueoyesj 674 4 addressed address VBN cord-000248-zueoyesj 674 5 , , , cord-000248-zueoyesj 674 6 in in IN cord-000248-zueoyesj 674 7 part part NN cord-000248-zueoyesj 674 8 , , , cord-000248-zueoyesj 674 9 this this DT cord-000248-zueoyesj 674 10 question question NN cord-000248-zueoyesj 674 11 : : : cord-000248-zueoyesj 674 12 '' '' '' cord-000248-zueoyesj 675 1 Can Can MD cord-000248-zueoyesj 675 2 we -PRON- PRP cord-000248-zueoyesj 675 3 quantify quantify VB cord-000248-zueoyesj 675 4 the the DT cord-000248-zueoyesj 675 5 chaos chaos NN cord-000248-zueoyesj 675 6 observed observe VBN cord-000248-zueoyesj 675 7 in in IN cord-000248-zueoyesj 675 8 the the DT cord-000248-zueoyesj 675 9 genome genome NN cord-000248-zueoyesj 675 10 from from IN cord-000248-zueoyesj 675 11 the the DT cord-000248-zueoyesj 675 12 increasingly increasingly RB cord-000248-zueoyesj 675 13 available available JJ cord-000248-zueoyesj 675 14 transcriptional transcriptional JJ cord-000248-zueoyesj 675 15 data datum NNS cord-000248-zueoyesj 675 16 and and CC cord-000248-zueoyesj 675 17 relate relate VBP cord-000248-zueoyesj 675 18 it -PRON- PRP cord-000248-zueoyesj 675 19 to to TO cord-000248-zueoyesj 675 20 tumour tumour VB cord-000248-zueoyesj 675 21 progression progression NN cord-000248-zueoyesj 675 22 ? ? . cord-000248-zueoyesj 675 23 ' ' '' cord-000248-zueoyesj 675 24 ' ' '' cord-000248-zueoyesj 676 1 If if IN cord-000248-zueoyesj 676 2 no no DT cord-000248-zueoyesj 676 3 commonalities commonality NNS cord-000248-zueoyesj 676 4 were be VBD cord-000248-zueoyesj 676 5 observed observe VBN cord-000248-zueoyesj 676 6 , , , cord-000248-zueoyesj 676 7 we -PRON- PRP cord-000248-zueoyesj 676 8 would would MD cord-000248-zueoyesj 676 9 not not RB cord-000248-zueoyesj 676 10 have have VB cord-000248-zueoyesj 676 11 found find VBN cord-000248-zueoyesj 676 12 interesting interesting JJ cord-000248-zueoyesj 676 13 biomarkers biomarker NNS cord-000248-zueoyesj 676 14 that that WDT cord-000248-zueoyesj 676 15 seem seem VBP cord-000248-zueoyesj 676 16 that that IN cord-000248-zueoyesj 676 17 strongly strongly RB cord-000248-zueoyesj 676 18 correlate correlate VB cord-000248-zueoyesj 676 19 with with IN cord-000248-zueoyesj 676 20 the the DT cord-000248-zueoyesj 676 21 divergences divergence NNS cord-000248-zueoyesj 676 22 from from IN cord-000248-zueoyesj 676 23 normal normal JJ cord-000248-zueoyesj 676 24 tissue tissue NN cord-000248-zueoyesj 676 25 types type NNS cord-000248-zueoyesj 676 26 . . . cord-000248-zueoyesj 677 1 We -PRON- PRP cord-000248-zueoyesj 677 2 know know VBP cord-000248-zueoyesj 677 3 from from IN cord-000248-zueoyesj 677 4 our -PRON- PRP$ cord-000248-zueoyesj 677 5 results result NNS cord-000248-zueoyesj 677 6 that that IN cord-000248-zueoyesj 677 7 these these DT cord-000248-zueoyesj 677 8 commonalities commonality NNS cord-000248-zueoyesj 677 9 do do VBP cord-000248-zueoyesj 677 10 occur occur VB cord-000248-zueoyesj 677 11 . . . cord-000248-zueoyesj 678 1 We -PRON- PRP cord-000248-zueoyesj 678 2 need need VBP cord-000248-zueoyesj 678 3 to to TO cord-000248-zueoyesj 678 4 go go VB cord-000248-zueoyesj 678 5 back back RB cord-000248-zueoyesj 678 6 to to IN cord-000248-zueoyesj 678 7 basics basic NNS cord-000248-zueoyesj 678 8 to to TO cord-000248-zueoyesj 678 9 explain explain VB cord-000248-zueoyesj 678 10 these these DT cord-000248-zueoyesj 678 11 evolving evolve VBG cord-000248-zueoyesj 678 12 concepts concept NNS cord-000248-zueoyesj 678 13 and and CC cord-000248-zueoyesj 678 14 resolve resolve VB cord-000248-zueoyesj 678 15 this this DT cord-000248-zueoyesj 678 16 apparent apparent JJ cord-000248-zueoyesj 678 17 paradox paradox NN cord-000248-zueoyesj 678 18 . . . cord-000248-zueoyesj 679 1 The the DT cord-000248-zueoyesj 679 2 phrase phrase NN cord-000248-zueoyesj 679 3 ' ' '' cord-000248-zueoyesj 679 4 ' ' `` cord-000248-zueoyesj 679 5 karyotypic karyotypic NNP cord-000248-zueoyesj 679 6 entropy entropy NNP cord-000248-zueoyesj 679 7 ' ' '' cord-000248-zueoyesj 679 8 ' ' '' cord-000248-zueoyesj 679 9 has have VBZ cord-000248-zueoyesj 679 10 been be VBN cord-000248-zueoyesj 679 11 used use VBN cord-000248-zueoyesj 679 12 in in IN cord-000248-zueoyesj 679 13 the the DT cord-000248-zueoyesj 679 14 past past NN cord-000248-zueoyesj 679 15 to to TO cord-000248-zueoyesj 679 16 define define VB cord-000248-zueoyesj 679 17 what what WP cord-000248-zueoyesj 679 18 is be VBZ cord-000248-zueoyesj 679 19 actually actually RB cord-000248-zueoyesj 679 20 a a DT cord-000248-zueoyesj 679 21 divergence divergence NN cord-000248-zueoyesj 679 22 from from IN cord-000248-zueoyesj 679 23 the the DT cord-000248-zueoyesj 679 24 normal normal JJ cord-000248-zueoyesj 679 25 chromosome chromosome NN cord-000248-zueoyesj 679 26 structure structure NN cord-000248-zueoyesj 679 27 and and CC cord-000248-zueoyesj 679 28 it -PRON- PRP cord-000248-zueoyesj 679 29 genomic genomic JJ cord-000248-zueoyesj 679 30 organization organization NN cord-000248-zueoyesj 679 31 . . . cord-000248-zueoyesj 680 1 This this DT cord-000248-zueoyesj 680 2 denomination denomination NN cord-000248-zueoyesj 680 3 has have VBZ cord-000248-zueoyesj 680 4 also also RB cord-000248-zueoyesj 680 5 been be VBN cord-000248-zueoyesj 680 6 employed employ VBN cord-000248-zueoyesj 680 7 by by IN cord-000248-zueoyesj 680 8 several several JJ cord-000248-zueoyesj 680 9 authors author NNS cord-000248-zueoyesj 680 10 , , , cord-000248-zueoyesj 680 11 notably notably RB cord-000248-zueoyesj 680 12 [ [ -LRB- cord-000248-zueoyesj 680 13 601 601 CD cord-000248-zueoyesj 680 14 ] ] -RRB- cord-000248-zueoyesj 680 15 , , , cord-000248-zueoyesj 680 16 but but CC cord-000248-zueoyesj 680 17 it -PRON- PRP cord-000248-zueoyesj 680 18 has have VBZ cord-000248-zueoyesj 680 19 also also RB cord-000248-zueoyesj 680 20 been be VBN cord-000248-zueoyesj 680 21 used use VBN cord-000248-zueoyesj 680 22 in in IN cord-000248-zueoyesj 680 23 at at RB cord-000248-zueoyesj 680 24 least least RBS cord-000248-zueoyesj 680 25 two two CD cord-000248-zueoyesj 680 26 other other JJ cord-000248-zueoyesj 680 27 publications publication NNS cord-000248-zueoyesj 680 28 [ [ -LRB- cord-000248-zueoyesj 680 29 620 620 CD cord-000248-zueoyesj 680 30 , , , cord-000248-zueoyesj 680 31 621 621 CD cord-000248-zueoyesj 680 32 ] ] -RRB- cord-000248-zueoyesj 680 33 . . . cord-000248-zueoyesj 681 1 These these DT cord-000248-zueoyesj 681 2 works work NNS cord-000248-zueoyesj 681 3 have have VBP cord-000248-zueoyesj 681 4 in in IN cord-000248-zueoyesj 681 5 common common JJ cord-000248-zueoyesj 681 6 the the DT cord-000248-zueoyesj 681 7 use use NN cord-000248-zueoyesj 681 8 of of IN cord-000248-zueoyesj 681 9 this this DT cord-000248-zueoyesj 681 10 term term NN cord-000248-zueoyesj 681 11 to to TO cord-000248-zueoyesj 681 12 refer refer VB cord-000248-zueoyesj 681 13 to to IN cord-000248-zueoyesj 681 14 a a DT cord-000248-zueoyesj 681 15 ' ' '' cord-000248-zueoyesj 681 16 ' ' `` cord-000248-zueoyesj 681 17 disorder disorder NN cord-000248-zueoyesj 681 18 ' ' '' cord-000248-zueoyesj 681 19 ' ' '' cord-000248-zueoyesj 681 20 , , , cord-000248-zueoyesj 681 21 fuelled fuel VBN cord-000248-zueoyesj 681 22 by by IN cord-000248-zueoyesj 681 23 the the DT cord-000248-zueoyesj 681 24 undergraduate undergraduate JJ cord-000248-zueoyesj 681 25 textbooks textbook NNS cord-000248-zueoyesj 681 26 indoctrination indoctrination NN cord-000248-zueoyesj 681 27 of of IN cord-000248-zueoyesj 681 28 associating associate VBG cord-000248-zueoyesj 681 29 increase increase NN cord-000248-zueoyesj 681 30 of of IN cord-000248-zueoyesj 681 31 entropy entropy NN cord-000248-zueoyesj 681 32 in in IN cord-000248-zueoyesj 681 33 natural natural JJ cord-000248-zueoyesj 681 34 spontaneous spontaneous JJ cord-000248-zueoyesj 681 35 processes process NNS cord-000248-zueoyesj 681 36 with with IN cord-000248-zueoyesj 681 37 the the DT cord-000248-zueoyesj 681 38 increase increase NN cord-000248-zueoyesj 681 39 of of IN cord-000248-zueoyesj 681 40 ' ' '' cord-000248-zueoyesj 681 41 ' ' '' cord-000248-zueoyesj 681 42 observed observed JJ cord-000248-zueoyesj 681 43 disorder disorder NN cord-000248-zueoyesj 681 44 ' ' '' cord-000248-zueoyesj 681 45 ' ' '' cord-000248-zueoyesj 681 46 in in IN cord-000248-zueoyesj 681 47 the the DT cord-000248-zueoyesj 681 48 system system NN cord-000248-zueoyesj 681 49 . . . cord-000248-zueoyesj 682 1 We -PRON- PRP cord-000248-zueoyesj 682 2 propose propose VBP cord-000248-zueoyesj 682 3 that that IN cord-000248-zueoyesj 682 4 the the DT cord-000248-zueoyesj 682 5 use use NN cord-000248-zueoyesj 682 6 of of IN cord-000248-zueoyesj 682 7 a a DT cord-000248-zueoyesj 682 8 natural natural JJ cord-000248-zueoyesj 682 9 measure measure NN cord-000248-zueoyesj 682 10 of of IN cord-000248-zueoyesj 682 11 divergence divergence NN cord-000248-zueoyesj 682 12 , , , cord-000248-zueoyesj 682 13 the the DT cord-000248-zueoyesj 682 14 Jensen Jensen NNP cord-000248-zueoyesj 682 15 - - HYPH cord-000248-zueoyesj 682 16 Shannon Shannon NNP cord-000248-zueoyesj 682 17 divergence divergence NN cord-000248-zueoyesj 682 18 , , , cord-000248-zueoyesj 682 19 could could MD cord-000248-zueoyesj 682 20 not not RB cord-000248-zueoyesj 682 21 only only RB cord-000248-zueoyesj 682 22 be be VB cord-000248-zueoyesj 682 23 a a DT cord-000248-zueoyesj 682 24 more more RBR cord-000248-zueoyesj 682 25 formal formal JJ cord-000248-zueoyesj 682 26 , , , cord-000248-zueoyesj 682 27 but but CC cord-000248-zueoyesj 682 28 also also RB cord-000248-zueoyesj 682 29 more more RBR cord-000248-zueoyesj 682 30 appropriate appropriate JJ cord-000248-zueoyesj 682 31 modelling modelling NN cord-000248-zueoyesj 682 32 approach approach NN cord-000248-zueoyesj 682 33 . . . cord-000248-zueoyesj 683 1 As as IN cord-000248-zueoyesj 683 2 such such JJ cord-000248-zueoyesj 683 3 , , , cord-000248-zueoyesj 683 4 we -PRON- PRP cord-000248-zueoyesj 683 5 propose propose VBP cord-000248-zueoyesj 683 6 to to TO cord-000248-zueoyesj 683 7 introduce introduce VB cord-000248-zueoyesj 683 8 the the DT cord-000248-zueoyesj 683 9 term term NN cord-000248-zueoyesj 683 10 ' ' `` cord-000248-zueoyesj 683 11 karyotypic karyotypic NNP cord-000248-zueoyesj 683 12 divergence divergence NNP cord-000248-zueoyesj 683 13 ' ' '' cord-000248-zueoyesj 683 14 or or CC cord-000248-zueoyesj 683 15 ' ' `` cord-000248-zueoyesj 683 16 karyotypic karyotypic NNP cord-000248-zueoyesj 683 17 Jensen Jensen NNP cord-000248-zueoyesj 683 18 - - HYPH cord-000248-zueoyesj 683 19 Shannon Shannon NNP cord-000248-zueoyesj 683 20 divergence divergence NN cord-000248-zueoyesj 683 21 ' ' '' cord-000248-zueoyesj 683 22 to to TO cord-000248-zueoyesj 683 23 replace replace VB cord-000248-zueoyesj 683 24 this this DT cord-000248-zueoyesj 683 25 concept concept NN cord-000248-zueoyesj 683 26 and and CC cord-000248-zueoyesj 683 27 to to TO cord-000248-zueoyesj 683 28 avoid avoid VB cord-000248-zueoyesj 683 29 a a DT cord-000248-zueoyesj 683 30 subjective subjective JJ cord-000248-zueoyesj 683 31 approach approach NN cord-000248-zueoyesj 683 32 . . . cord-000248-zueoyesj 684 1 Why why WRB cord-000248-zueoyesj 684 2 is be VBZ cord-000248-zueoyesj 684 3 it -PRON- PRP cord-000248-zueoyesj 684 4 the the DT cord-000248-zueoyesj 684 5 case case NN cord-000248-zueoyesj 684 6 that that IN cord-000248-zueoyesj 684 7 we -PRON- PRP cord-000248-zueoyesj 684 8 observe observe VBP cord-000248-zueoyesj 684 9 the the DT cord-000248-zueoyesj 684 10 Normalized Normalized NNP cord-000248-zueoyesj 684 11 Shannon Shannon NNP cord-000248-zueoyesj 684 12 Entropy Entropy NNP cord-000248-zueoyesj 684 13 of of IN cord-000248-zueoyesj 684 14 the the DT cord-000248-zueoyesj 684 15 transcriptional transcriptional JJ cord-000248-zueoyesj 684 16 profile profile NN cord-000248-zueoyesj 684 17 decreasing decrease VBG cord-000248-zueoyesj 684 18 with with IN cord-000248-zueoyesj 684 19 cancer cancer NN cord-000248-zueoyesj 684 20 progression progression NN cord-000248-zueoyesj 684 21 when when WRB cord-000248-zueoyesj 684 22 intuitively intuitively RB cord-000248-zueoyesj 684 23 our -PRON- PRP$ cord-000248-zueoyesj 684 24 average average JJ cord-000248-zueoyesj 684 25 expected expect VBN cord-000248-zueoyesj 684 26 surprisal surprisal NNP cord-000248-zueoyesj 684 27 ( ( -LRB- cord-000248-zueoyesj 684 28 Shannon Shannon NNP cord-000248-zueoyesj 684 29 Entropy Entropy NNP cord-000248-zueoyesj 684 30 ) ) -RRB- cord-000248-zueoyesj 684 31 should should MD cord-000248-zueoyesj 684 32 increase increase VB cord-000248-zueoyesj 684 33 with with IN cord-000248-zueoyesj 684 34 progression progression NN cord-000248-zueoyesj 684 35 ? ? . cord-000248-zueoyesj 685 1 Arieh Arieh NNP cord-000248-zueoyesj 685 2 Ben Ben NNP cord-000248-zueoyesj 685 3 - - HYPH cord-000248-zueoyesj 685 4 Naim Naim NNP cord-000248-zueoyesj 685 5 in in IN cord-000248-zueoyesj 685 6 his -PRON- PRP$ cord-000248-zueoyesj 685 7 recent recent JJ cord-000248-zueoyesj 685 8 book book NN cord-000248-zueoyesj 685 9 ' ' '' cord-000248-zueoyesj 685 10 ' ' '' cord-000248-zueoyesj 685 11 A a DT cord-000248-zueoyesj 685 12 farewell farewell NN cord-000248-zueoyesj 685 13 to to IN cord-000248-zueoyesj 685 14 Entropy entropy NN cord-000248-zueoyesj 685 15 : : : cord-000248-zueoyesj 685 16 Statistical Statistical NNP cord-000248-zueoyesj 685 17 Thermodynamics thermodynamic NNS cord-000248-zueoyesj 685 18 based base VBN cord-000248-zueoyesj 685 19 on on IN cord-000248-zueoyesj 685 20 Information Information NNP cord-000248-zueoyesj 685 21 ' ' '' cord-000248-zueoyesj 685 22 ' ' '' cord-000248-zueoyesj 685 23 [ [ -LRB- cord-000248-zueoyesj 685 24 622 622 CD cord-000248-zueoyesj 685 25 ] ] -RRB- cord-000248-zueoyesj 686 1 comments:''It comments:''It NNP cord-000248-zueoyesj 686 2 is be VBZ cord-000248-zueoyesj 686 3 interesting interesting JJ cord-000248-zueoyesj 686 4 to to TO cord-000248-zueoyesj 686 5 note note VB cord-000248-zueoyesj 686 6 that that IN cord-000248-zueoyesj 686 7 Landsberg Landsberg NNP cord-000248-zueoyesj 686 8 ( ( -LRB- cord-000248-zueoyesj 686 9 1978 1978 CD cord-000248-zueoyesj 686 10 ) ) -RRB- cord-000248-zueoyesj 686 11 not not RB cord-000248-zueoyesj 686 12 only only RB cord-000248-zueoyesj 686 13 contended contend VBD cord-000248-zueoyesj 686 14 that that IN cord-000248-zueoyesj 686 15 disorder disorder NN cord-000248-zueoyesj 686 16 is be VBZ cord-000248-zueoyesj 686 17 an an DT cord-000248-zueoyesj 686 18 ill ill RB cord-000248-zueoyesj 686 19 - - HYPH cord-000248-zueoyesj 686 20 defined define VBN cord-000248-zueoyesj 686 21 concept concept NN cord-000248-zueoyesj 686 22 , , , cord-000248-zueoyesj 686 23 but but CC cord-000248-zueoyesj 686 24 actually actually RB cord-000248-zueoyesj 686 25 made make VBD cord-000248-zueoyesj 686 26 the the DT cord-000248-zueoyesj 686 27 assertion assertion NN cord-000248-zueoyesj 686 28 that that IN cord-000248-zueoyesj 686 29 ' ' `` cord-000248-zueoyesj 686 30 it -PRON- PRP cord-000248-zueoyesj 686 31 is be VBZ cord-000248-zueoyesj 686 32 reasonable reasonable JJ cord-000248-zueoyesj 686 33 to to TO cord-000248-zueoyesj 686 34 expect expect VB cord-000248-zueoyesj 686 35 ' ' `` cord-000248-zueoyesj 686 36 disorder disorder NN cord-000248-zueoyesj 686 37 ' ' '' cord-000248-zueoyesj 686 38 to to TO cord-000248-zueoyesj 686 39 be be VB cord-000248-zueoyesj 686 40 an an DT cord-000248-zueoyesj 686 41 intensive intensive JJ cord-000248-zueoyesj 686 42 variable variable NN cord-000248-zueoyesj 686 43 ' ' '' cord-000248-zueoyesj 686 44 ' ' '' cord-000248-zueoyesj 686 45 ' ' '' cord-000248-zueoyesj 686 46 . . . cord-000248-zueoyesj 687 1 Ben Ben NNP cord-000248-zueoyesj 687 2 - - HYPH cord-000248-zueoyesj 687 3 Naim Naim NNP cord-000248-zueoyesj 687 4 also also RB cord-000248-zueoyesj 687 5 states state VBZ cord-000248-zueoyesj 687 6 : : : cord-000248-zueoyesj 687 7 '' '' '' cord-000248-zueoyesj 688 1 In in IN cord-000248-zueoyesj 688 2 my -PRON- PRP$ cord-000248-zueoyesj 688 3 view view NN cord-000248-zueoyesj 688 4 , , , cord-000248-zueoyesj 688 5 it -PRON- PRP cord-000248-zueoyesj 688 6 does do VBZ cord-000248-zueoyesj 688 7 not not RB cord-000248-zueoyesj 688 8 make make VB cord-000248-zueoyesj 688 9 any any DT cord-000248-zueoyesj 688 10 difference difference NN cord-000248-zueoyesj 688 11 if if IN cord-000248-zueoyesj 688 12 you -PRON- PRP cord-000248-zueoyesj 688 13 refer refer VBP cord-000248-zueoyesj 688 14 to to IN cord-000248-zueoyesj 688 15 information information NN cord-000248-zueoyesj 688 16 or or CC cord-000248-zueoyesj 688 17 to to IN cord-000248-zueoyesj 688 18 disorder disorder NN cord-000248-zueoyesj 688 19 , , , cord-000248-zueoyesj 688 20 as as IN cord-000248-zueoyesj 688 21 subjective subjective JJ cord-000248-zueoyesj 688 22 or or CC cord-000248-zueoyesj 688 23 objective objective JJ cord-000248-zueoyesj 688 24 . . . cord-000248-zueoyesj 689 1 What what WP cord-000248-zueoyesj 689 2 matters matter VBZ cord-000248-zueoyesj 689 3 is be VBZ cord-000248-zueoyesj 689 4 that that DT cord-000248-zueoyesj 689 5 order order NN cord-000248-zueoyesj 689 6 and and CC cord-000248-zueoyesj 689 7 disorder disorder NN cord-000248-zueoyesj 689 8 are be VBP cord-000248-zueoyesj 689 9 not not RB cord-000248-zueoyesj 689 10 well well RB cord-000248-zueoyesj 689 11 - - HYPH cord-000248-zueoyesj 689 12 defined define VBN cord-000248-zueoyesj 689 13 scientific scientific JJ cord-000248-zueoyesj 689 14 concepts concept NNS cord-000248-zueoyesj 689 15 . . . cord-000248-zueoyesj 690 1 On on IN cord-000248-zueoyesj 690 2 the the DT cord-000248-zueoyesj 690 3 other other JJ cord-000248-zueoyesj 690 4 hand hand NN cord-000248-zueoyesj 690 5 , , , cord-000248-zueoyesj 690 6 information information NN cord-000248-zueoyesj 690 7 is be VBZ cord-000248-zueoyesj 690 8 a a DT cord-000248-zueoyesj 690 9 well well RB cord-000248-zueoyesj 690 10 - - HYPH cord-000248-zueoyesj 690 11 defined define VBN cord-000248-zueoyesj 690 12 scientific scientific JJ cord-000248-zueoyesj 690 13 quantity quantity NN cord-000248-zueoyesj 690 14 , , , cord-000248-zueoyesj 690 15 as as RB cord-000248-zueoyesj 690 16 much much RB cord-000248-zueoyesj 690 17 as as IN cord-000248-zueoyesj 690 18 a a DT cord-000248-zueoyesj 690 19 point point NN cord-000248-zueoyesj 690 20 or or CC cord-000248-zueoyesj 690 21 a a DT cord-000248-zueoyesj 690 22 line line NN cord-000248-zueoyesj 690 23 are be VBP cord-000248-zueoyesj 690 24 scientific scientific JJ cord-000248-zueoyesj 690 25 in in IN cord-000248-zueoyesj 690 26 geometry geometry NN cord-000248-zueoyesj 690 27 , , , cord-000248-zueoyesj 690 28 or or CC cord-000248-zueoyesj 690 29 mass mass NN cord-000248-zueoyesj 690 30 or or CC cord-000248-zueoyesj 690 31 charge charge NN cord-000248-zueoyesj 690 32 of of IN cord-000248-zueoyesj 690 33 a a DT cord-000248-zueoyesj 690 34 particle particle NN cord-000248-zueoyesj 690 35 are be VBP cord-000248-zueoyesj 690 36 scientific scientific JJ cord-000248-zueoyesj 690 37 in in IN cord-000248-zueoyesj 690 38 physics physics NN cord-000248-zueoyesj 690 39 . . . cord-000248-zueoyesj 690 40 ' ' '' cord-000248-zueoyesj 690 41 ' ' '' cord-000248-zueoyesj 691 1 However however RB cord-000248-zueoyesj 691 2 , , , cord-000248-zueoyesj 691 3 in in IN cord-000248-zueoyesj 691 4 a a DT cord-000248-zueoyesj 691 5 manuscript manuscript NN cord-000248-zueoyesj 691 6 entitled entitle VBN cord-000248-zueoyesj 691 7 ' ' `` cord-000248-zueoyesj 691 8 ' ' `` cord-000248-zueoyesj 691 9 Can Can MD cord-000248-zueoyesj 691 10 Entropy entropy VB cord-000248-zueoyesj 691 11 and and CC cord-000248-zueoyesj 691 12 ' ' `` cord-000248-zueoyesj 691 13 order order NN cord-000248-zueoyesj 691 14 ' ' '' cord-000248-zueoyesj 691 15 increase increase NN cord-000248-zueoyesj 691 16 together together RB cord-000248-zueoyesj 691 17 ? ? . cord-000248-zueoyesj 691 18 '' '' '' cord-000248-zueoyesj 692 1 Landberg Landberg NNP cord-000248-zueoyesj 692 2 defines define VBZ cord-000248-zueoyesj 692 3 ( ( -LRB- cord-000248-zueoyesj 692 4 in in IN cord-000248-zueoyesj 692 5 an an DT cord-000248-zueoyesj 692 6 attempt attempt NN cord-000248-zueoyesj 692 7 to to TO cord-000248-zueoyesj 692 8 decouple decouple VB cord-000248-zueoyesj 692 9 the the DT cord-000248-zueoyesj 692 10 notions notion NNS cord-000248-zueoyesj 692 11 of of IN cord-000248-zueoyesj 692 12 order order NN cord-000248-zueoyesj 692 13 and and CC cord-000248-zueoyesj 692 14 entropy entropy NN cord-000248-zueoyesj 692 15 ) ) -RRB- cord-000248-zueoyesj 692 16 , , , cord-000248-zueoyesj 692 17 for for IN cord-000248-zueoyesj 692 18 a a DT cord-000248-zueoyesj 692 19 thermodynamical thermodynamical JJ cord-000248-zueoyesj 692 20 system system NN cord-000248-zueoyesj 692 21 that that WDT cord-000248-zueoyesj 692 22 can can MD cord-000248-zueoyesj 692 23 be be VB cord-000248-zueoyesj 692 24 on on IN cord-000248-zueoyesj 692 25 N n CD cord-000248-zueoyesj 692 26 states state VBZ cord-000248-zueoyesj 692 27 the the DT cord-000248-zueoyesj 692 28 ' ' `` cord-000248-zueoyesj 692 29 disorder disorder NN cord-000248-zueoyesj 692 30 ' ' '' cord-000248-zueoyesj 692 31 D(N d(n NN cord-000248-zueoyesj 692 32 ) ) -RRB- cord-000248-zueoyesj 692 33 to to TO cord-000248-zueoyesj 692 34 be be VB cord-000248-zueoyesj 692 35 the the DT cord-000248-zueoyesj 692 36 Normalized Normalized NNP cord-000248-zueoyesj 692 37 Entropy Entropy NNP cord-000248-zueoyesj 692 38 ( ( -LRB- cord-000248-zueoyesj 692 39 which which WDT cord-000248-zueoyesj 692 40 is be VBZ cord-000248-zueoyesj 692 41 a a DT cord-000248-zueoyesj 692 42 function function NN cord-000248-zueoyesj 692 43 of of IN cord-000248-zueoyesj 692 44 N n NN cord-000248-zueoyesj 692 45 ) ) -RRB- cord-000248-zueoyesj 692 46 divided divide VBN cord-000248-zueoyesj 692 47 by by IN cord-000248-zueoyesj 692 48 Boltzmann Boltzmann NNP cord-000248-zueoyesj 692 49 's 's POS cord-000248-zueoyesj 692 50 constant constant JJ cord-000248-zueoyesj 692 51 [ [ -LRB- cord-000248-zueoyesj 692 52 623 623 CD cord-000248-zueoyesj 692 53 ] ] -RRB- cord-000248-zueoyesj 692 54 . . . cord-000248-zueoyesj 692 55 ' ' '' cord-000248-zueoyesj 693 1 Disorder disorder NN cord-000248-zueoyesj 693 2 ' ' '' cord-000248-zueoyesj 693 3 then then RB cord-000248-zueoyesj 693 4 is be VBZ cord-000248-zueoyesj 693 5 an an DT cord-000248-zueoyesj 693 6 intensive intensive JJ cord-000248-zueoyesj 693 7 magnitude magnitude NN cord-000248-zueoyesj 693 8 bounded bound VBN cord-000248-zueoyesj 693 9 by by IN cord-000248-zueoyesj 693 10 0 0 CD cord-000248-zueoyesj 693 11 and and CC cord-000248-zueoyesj 693 12 1 1 CD cord-000248-zueoyesj 693 13 , , , cord-000248-zueoyesj 693 14 and and CC cord-000248-zueoyesj 693 15 ' ' `` cord-000248-zueoyesj 693 16 order order NN cord-000248-zueoyesj 693 17 ' ' '' cord-000248-zueoyesj 693 18 is be VBZ cord-000248-zueoyesj 693 19 defined define VBN cord-000248-zueoyesj 693 20 as as IN cord-000248-zueoyesj 693 21 1-D(N 1-d(n CD cord-000248-zueoyesj 693 22 ) ) -RRB- cord-000248-zueoyesj 693 23 . . . cord-000248-zueoyesj 694 1 While while IN cord-000248-zueoyesj 694 2 Landberg Landberg NNP cord-000248-zueoyesj 694 3 's 's POS cord-000248-zueoyesj 694 4 decoupling decouple VBG cord-000248-zueoyesj 694 5 argument argument NN cord-000248-zueoyesj 694 6 between between IN cord-000248-zueoyesj 694 7 order order NN cord-000248-zueoyesj 694 8 and and CC cord-000248-zueoyesj 694 9 entropy entropy NN cord-000248-zueoyesj 694 10 [ [ -LRB- cord-000248-zueoyesj 694 11 623 623 CD cord-000248-zueoyesj 694 12 ] ] -RRB- cord-000248-zueoyesj 694 13 may may MD cord-000248-zueoyesj 694 14 still still RB cord-000248-zueoyesj 694 15 be be VB cord-000248-zueoyesj 694 16 controversial controversial JJ cord-000248-zueoyesj 694 17 in in IN cord-000248-zueoyesj 694 18 Physics Physics NNP cord-000248-zueoyesj 694 19 , , , cord-000248-zueoyesj 694 20 the the DT cord-000248-zueoyesj 694 21 question question NN cord-000248-zueoyesj 694 22 is be VBZ cord-000248-zueoyesj 694 23 pertinent pertinent JJ cord-000248-zueoyesj 694 24 for for IN cord-000248-zueoyesj 694 25 our -PRON- PRP$ cord-000248-zueoyesj 694 26 apparent apparent JJ cord-000248-zueoyesj 694 27 paradox paradox NN cord-000248-zueoyesj 694 28 ( ( -LRB- cord-000248-zueoyesj 694 29 the the DT cord-000248-zueoyesj 694 30 question question NN cord-000248-zueoyesj 694 31 that that WDT cord-000248-zueoyesj 694 32 motivates motivate VBZ cord-000248-zueoyesj 694 33 this this DT cord-000248-zueoyesj 694 34 subsection subsection NN cord-000248-zueoyesj 694 35 ) ) -RRB- cord-000248-zueoyesj 694 36 . . . cord-000248-zueoyesj 695 1 Borrowing borrow VBG cord-000248-zueoyesj 695 2 from from IN cord-000248-zueoyesj 695 3 the the DT cord-000248-zueoyesj 695 4 title title NN cord-000248-zueoyesj 695 5 of of IN cord-000248-zueoyesj 695 6 his -PRON- PRP$ cord-000248-zueoyesj 695 7 paper paper NN cord-000248-zueoyesj 695 8 we -PRON- PRP cord-000248-zueoyesj 695 9 could could MD cord-000248-zueoyesj 695 10 now now RB cord-000248-zueoyesj 695 11 state state VB cord-000248-zueoyesj 695 12 the the DT cord-000248-zueoyesj 695 13 central central JJ cord-000248-zueoyesj 695 14 question question NN cord-000248-zueoyesj 695 15 as as IN cord-000248-zueoyesj 695 16 '' '' '' cord-000248-zueoyesj 696 1 Can Can MD cord-000248-zueoyesj 696 2 Shannon Shannon NNP cord-000248-zueoyesj 696 3 Entropy Entropy NNP cord-000248-zueoyesj 696 4 increase increase VB cord-000248-zueoyesj 696 5 while while IN cord-000248-zueoyesj 696 6 the the DT cord-000248-zueoyesj 696 7 Normalized Normalized NNP cord-000248-zueoyesj 696 8 Shannon Shannon NNP cord-000248-zueoyesj 696 9 Entropy Entropy NNP cord-000248-zueoyesj 696 10 decrease decrease NN cord-000248-zueoyesj 696 11 ? ? . cord-000248-zueoyesj 696 12 ' ' '' cord-000248-zueoyesj 696 13 ' ' '' cord-000248-zueoyesj 697 1 The the DT cord-000248-zueoyesj 697 2 solution solution NN cord-000248-zueoyesj 697 3 of of IN cord-000248-zueoyesj 697 4 this this DT cord-000248-zueoyesj 697 5 apparent apparent JJ cord-000248-zueoyesj 697 6 paradox paradox NN cord-000248-zueoyesj 697 7 is be VBZ cord-000248-zueoyesj 697 8 a a DT cord-000248-zueoyesj 697 9 trick trick NN cord-000248-zueoyesj 697 10 of of IN cord-000248-zueoyesj 697 11 escapologism escapologism NN cord-000248-zueoyesj 697 12 , , , cord-000248-zueoyesj 697 13 perhaps perhaps RB cord-000248-zueoyesj 697 14 also also RB cord-000248-zueoyesj 697 15 paralleled parallel VBN cord-000248-zueoyesj 697 16 by by IN cord-000248-zueoyesj 697 17 what what WP cord-000248-zueoyesj 697 18 a a DT cord-000248-zueoyesj 697 19 cancer cancer NN cord-000248-zueoyesj 697 20 cell cell NN cord-000248-zueoyesj 697 21 may may MD cord-000248-zueoyesj 697 22 be be VB cord-000248-zueoyesj 697 23 experiencing experience VBG cord-000248-zueoyesj 697 24 ( ( -LRB- cord-000248-zueoyesj 697 25 or or CC cord-000248-zueoyesj 697 26 ' ' '' cord-000248-zueoyesj 697 27 ' ' '' cord-000248-zueoyesj 697 28 reacting react VBG cord-000248-zueoyesj 697 29 ' ' '' cord-000248-zueoyesj 697 30 ' ' '' cord-000248-zueoyesj 698 1 in in IN cord-000248-zueoyesj 698 2 response response NN cord-000248-zueoyesj 698 3 to to IN cord-000248-zueoyesj 698 4 increased increase VBN cord-000248-zueoyesj 698 5 sources source NNS cord-000248-zueoyesj 698 6 of of IN cord-000248-zueoyesj 698 7 stresses stress NNS cord-000248-zueoyesj 698 8 ) ) -RRB- cord-000248-zueoyesj 698 9 , , , cord-000248-zueoyesj 698 10 and and CC cord-000248-zueoyesj 698 11 it -PRON- PRP cord-000248-zueoyesj 698 12 is be VBZ cord-000248-zueoyesj 698 13 worth worth JJ cord-000248-zueoyesj 698 14 discussing discuss VBG cord-000248-zueoyesj 698 15 in in IN cord-000248-zueoyesj 698 16 this this DT cord-000248-zueoyesj 698 17 context context NN cord-000248-zueoyesj 698 18 . . . cord-000248-zueoyesj 699 1 Let let VB cord-000248-zueoyesj 699 2 H[X H[X NNP cord-000248-zueoyesj 699 3 ] ] -RRB- cord-000248-zueoyesj 699 4 be be VB cord-000248-zueoyesj 699 5 Shannon Shannon NNP cord-000248-zueoyesj 699 6 Entropy Entropy NNP cord-000248-zueoyesj 699 7 for for IN cord-000248-zueoyesj 699 8 an an DT cord-000248-zueoyesj 699 9 ensamble ensamble NN cord-000248-zueoyesj 699 10 X x NN cord-000248-zueoyesj 699 11 with with IN cord-000248-zueoyesj 699 12 N n CD cord-000248-zueoyesj 699 13 different different JJ cord-000248-zueoyesj 699 14 values value NNS cord-000248-zueoyesj 699 15 . . . cord-000248-zueoyesj 700 1 We -PRON- PRP cord-000248-zueoyesj 700 2 will will MD cord-000248-zueoyesj 700 3 now now RB cord-000248-zueoyesj 700 4 assume assume VB cord-000248-zueoyesj 700 5 , , , cord-000248-zueoyesj 700 6 and and CC cord-000248-zueoyesj 700 7 here here RB cord-000248-zueoyesj 700 8 is be VBZ cord-000248-zueoyesj 700 9 the the DT cord-000248-zueoyesj 700 10 trick trick NN cord-000248-zueoyesj 700 11 , , , cord-000248-zueoyesj 700 12 that that IN cord-000248-zueoyesj 700 13 N n NN cord-000248-zueoyesj 700 14 is be VBZ cord-000248-zueoyesj 700 15 not not RB cord-000248-zueoyesj 700 16 a a DT cord-000248-zueoyesj 700 17 constant constant JJ cord-000248-zueoyesj 700 18 , , , cord-000248-zueoyesj 700 19 but but CC cord-000248-zueoyesj 700 20 a a DT cord-000248-zueoyesj 700 21 function function NN cord-000248-zueoyesj 700 22 of of IN cord-000248-zueoyesj 700 23 time time NN cord-000248-zueoyesj 700 24 N(t N(t NNP cord-000248-zueoyesj 700 25 ) ) -RRB- cord-000248-zueoyesj 700 26 . . . cord-000248-zueoyesj 701 1 Let let VB cord-000248-zueoyesj 701 2 D(X D(X NNP cord-000248-zueoyesj 701 3 ( ( -LRB- cord-000248-zueoyesj 701 4 N(t N(t NNP cord-000248-zueoyesj 701 5 ) ) -RRB- cord-000248-zueoyesj 701 6 ) ) -RRB- cord-000248-zueoyesj 701 7 ) ) -RRB- cord-000248-zueoyesj 701 8 be be VB cord-000248-zueoyesj 701 9 the the DT cord-000248-zueoyesj 701 10 Normalized Normalized NNP cord-000248-zueoyesj 701 11 Shannon Shannon NNP cord-000248-zueoyesj 701 12 Entropy Entropy NNP cord-000248-zueoyesj 701 13 . . . cord-000248-zueoyesj 702 1 By by IN cord-000248-zueoyesj 702 2 definition definition NN cord-000248-zueoyesj 702 3 D(X(N(t D(X(N(t NNP cord-000248-zueoyesj 702 4 ) ) -RRB- cord-000248-zueoyesj 702 5 ) ) -RRB- cord-000248-zueoyesj 702 6 ) ) -RRB- cord-000248-zueoyesj 703 1 = = NFP cord-000248-zueoyesj 704 1 H(X(N(t)))/log h(x(n(t)))/log RB cord-000248-zueoyesj 704 2 2 2 CD cord-000248-zueoyesj 704 3 ( ( -LRB- cord-000248-zueoyesj 704 4 N(t N(t NNP cord-000248-zueoyesj 704 5 ) ) -RRB- cord-000248-zueoyesj 704 6 ) ) -RRB- cord-000248-zueoyesj 704 7 . . . cord-000248-zueoyesj 705 1 Then then RB cord-000248-zueoyesj 705 2 , , , cord-000248-zueoyesj 705 3 just just RB cord-000248-zueoyesj 705 4 by by IN cord-000248-zueoyesj 705 5 taking take VBG cord-000248-zueoyesj 705 6 the the DT cord-000248-zueoyesj 705 7 time time NN cord-000248-zueoyesj 705 8 derivatives derivative NNS cord-000248-zueoyesj 705 9 it -PRON- PRP cord-000248-zueoyesj 705 10 can can MD cord-000248-zueoyesj 705 11 be be VB cord-000248-zueoyesj 705 12 shown show VBN cord-000248-zueoyesj 705 13 that that IN cord-000248-zueoyesj 705 14 the the DT cord-000248-zueoyesj 705 15 time time NN cord-000248-zueoyesj 705 16 variation variation NN cord-000248-zueoyesj 705 17 of of IN cord-000248-zueoyesj 705 18 D(X(N(t D(X(N(t NNP cord-000248-zueoyesj 705 19 ) ) -RRB- cord-000248-zueoyesj 705 20 ) ) -RRB- cord-000248-zueoyesj 705 21 ) ) -RRB- cord-000248-zueoyesj 705 22 can can MD cord-000248-zueoyesj 705 23 be be VB cord-000248-zueoyesj 705 24 negative negative JJ cord-000248-zueoyesj 705 25 , , , cord-000248-zueoyesj 705 26 although although IN cord-000248-zueoyesj 705 27 the the DT cord-000248-zueoyesj 705 28 time time NN cord-000248-zueoyesj 705 29 rate rate NN cord-000248-zueoyesj 705 30 of of IN cord-000248-zueoyesj 705 31 H[X H[X NNP cord-000248-zueoyesj 705 32 ] ] -RRB- cord-000248-zueoyesj 705 33 can can MD cord-000248-zueoyesj 705 34 be be VB cord-000248-zueoyesj 705 35 positive positive JJ cord-000248-zueoyesj 705 36 . . . cord-000248-zueoyesj 706 1 where where WRB cord-000248-zueoyesj 706 2 k k NNP cord-000248-zueoyesj 706 3 is be VBZ cord-000248-zueoyesj 706 4 a a DT cord-000248-zueoyesj 706 5 constant constant NN cord-000248-zueoyesj 706 6 . . . cord-000248-zueoyesj 707 1 The the DT cord-000248-zueoyesj 707 2 escape escape NN cord-000248-zueoyesj 707 3 to to IN cord-000248-zueoyesj 707 4 our -PRON- PRP$ cord-000248-zueoyesj 707 5 paradox paradox NN cord-000248-zueoyesj 707 6 is be VBZ cord-000248-zueoyesj 707 7 ' ' `` cord-000248-zueoyesj 707 8 ' ' `` cord-000248-zueoyesj 707 9 achieved achieve VBN cord-000248-zueoyesj 707 10 ' ' '' cord-000248-zueoyesj 707 11 ' ' '' cord-000248-zueoyesj 707 12 via via IN cord-000248-zueoyesj 707 13 making make VBG cord-000248-zueoyesj 707 14 explicit explicit JJ cord-000248-zueoyesj 707 15 the the DT cord-000248-zueoyesj 707 16 time time NN cord-000248-zueoyesj 707 17 variability variability NN cord-000248-zueoyesj 707 18 of of IN cord-000248-zueoyesj 707 19 N(t N(t NNP cord-000248-zueoyesj 707 20 ) ) -RRB- cord-000248-zueoyesj 707 21 . . . cord-000248-zueoyesj 708 1 Landberg Landberg NNP cord-000248-zueoyesj 708 2 explicitly explicitly RB cord-000248-zueoyesj 708 3 mentions mention VBZ cord-000248-zueoyesj 708 4 that that IN cord-000248-zueoyesj 708 5 biological biological JJ cord-000248-zueoyesj 708 6 systems system NNS cord-000248-zueoyesj 708 7 are be VBP cord-000248-zueoyesj 708 8 examples example NNS cord-000248-zueoyesj 708 9 where where WRB cord-000248-zueoyesj 708 10 growth growth NN cord-000248-zueoyesj 708 11 processes process NNS cord-000248-zueoyesj 708 12 increase increase VBP cord-000248-zueoyesj 708 13 N(t N(t NNP cord-000248-zueoyesj 708 14 ) ) -RRB- cord-000248-zueoyesj 708 15 , , , cord-000248-zueoyesj 708 16 and and CC cord-000248-zueoyesj 708 17 perhaps perhaps RB cord-000248-zueoyesj 708 18 the the DT cord-000248-zueoyesj 708 19 increased increase VBN cord-000248-zueoyesj 708 20 diversity diversity NN cord-000248-zueoyesj 708 21 in in IN cord-000248-zueoyesj 708 22 the the DT cord-000248-zueoyesj 708 23 transcriptome transcriptome NN cord-000248-zueoyesj 708 24 of of IN cord-000248-zueoyesj 708 25 a a DT cord-000248-zueoyesj 708 26 cancer cancer NN cord-000248-zueoyesj 708 27 cell cell NN cord-000248-zueoyesj 708 28 during during IN cord-000248-zueoyesj 708 29 progression progression NN cord-000248-zueoyesj 708 30 is be VBZ cord-000248-zueoyesj 708 31 one one CD cord-000248-zueoyesj 708 32 of of IN cord-000248-zueoyesj 708 33 such such JJ cord-000248-zueoyesj 708 34 examples example NNS cord-000248-zueoyesj 708 35 . . . cord-000248-zueoyesj 709 1 This this DT cord-000248-zueoyesj 709 2 discussion discussion NN cord-000248-zueoyesj 709 3 somehow somehow RB cord-000248-zueoyesj 709 4 resolves resolve VBZ cord-000248-zueoyesj 709 5 the the DT cord-000248-zueoyesj 709 6 apparent apparent JJ cord-000248-zueoyesj 709 7 disassociations disassociation NNS cord-000248-zueoyesj 709 8 due due JJ cord-000248-zueoyesj 709 9 to to IN cord-000248-zueoyesj 709 10 language language NN cord-000248-zueoyesj 709 11 barriers barrier NNS cord-000248-zueoyesj 709 12 that that WDT cord-000248-zueoyesj 709 13 may may MD cord-000248-zueoyesj 709 14 exist exist VB cord-000248-zueoyesj 709 15 between between IN cord-000248-zueoyesj 709 16 the the DT cord-000248-zueoyesj 709 17 different different JJ cord-000248-zueoyesj 709 18 disciplines discipline NNS cord-000248-zueoyesj 709 19 ( ( -LRB- cord-000248-zueoyesj 709 20 physics physics NN cord-000248-zueoyesj 709 21 , , , cord-000248-zueoyesj 709 22 information information NN cord-000248-zueoyesj 709 23 theory theory NN cord-000248-zueoyesj 709 24 , , , cord-000248-zueoyesj 709 25 molecular molecular JJ cord-000248-zueoyesj 709 26 biology biology NN cord-000248-zueoyesj 709 27 and and CC cord-000248-zueoyesj 709 28 oncology oncology NN cord-000248-zueoyesj 709 29 ) ) -RRB- cord-000248-zueoyesj 709 30 . . . cord-000248-zueoyesj 710 1 A a DT cord-000248-zueoyesj 710 2 biologist biologist NN cord-000248-zueoyesj 710 3 may may MD cord-000248-zueoyesj 710 4 regard regard VB cord-000248-zueoyesj 710 5 a a DT cord-000248-zueoyesj 710 6 cancer cancer NN cord-000248-zueoyesj 710 7 cell cell NN cord-000248-zueoyesj 710 8 as as IN cord-000248-zueoyesj 710 9 an an DT cord-000248-zueoyesj 710 10 entity entity NN cord-000248-zueoyesj 710 11 that that WDT cord-000248-zueoyesj 710 12 , , , cord-000248-zueoyesj 710 13 during during IN cord-000248-zueoyesj 710 14 progression progression NN cord-000248-zueoyesj 710 15 , , , cord-000248-zueoyesj 710 16 may may MD cord-000248-zueoyesj 710 17 ' ' '' cord-000248-zueoyesj 710 18 ' ' `` cord-000248-zueoyesj 710 19 spread spread VB cord-000248-zueoyesj 710 20 ' ' '' cord-000248-zueoyesj 710 21 ' ' '' cord-000248-zueoyesj 710 22 its -PRON- PRP$ cord-000248-zueoyesj 710 23 transcriptomic transcriptomic JJ cord-000248-zueoyesj 710 24 profile profile NN cord-000248-zueoyesj 710 25 , , , cord-000248-zueoyesj 710 26 including include VBG cord-000248-zueoyesj 710 27 the the DT cord-000248-zueoyesj 710 28 generation generation NN cord-000248-zueoyesj 710 29 of of IN cord-000248-zueoyesj 710 30 a a DT cord-000248-zueoyesj 710 31 large large JJ cord-000248-zueoyesj 710 32 number number NN cord-000248-zueoyesj 710 33 of of IN cord-000248-zueoyesj 710 34 novel novel JJ cord-000248-zueoyesj 710 35 molecular molecular JJ cord-000248-zueoyesj 710 36 species specie NNS cord-000248-zueoyesj 710 37 ( ( -LRB- cord-000248-zueoyesj 710 38 due due IN cord-000248-zueoyesj 710 39 to to IN cord-000248-zueoyesj 710 40 adquired adquire VBN cord-000248-zueoyesj 710 41 characteristics characteristic NNS cord-000248-zueoyesj 710 42 during during IN cord-000248-zueoyesj 710 43 its -PRON- PRP$ cord-000248-zueoyesj 710 44 ' ' `` cord-000248-zueoyesj 710 45 ' ' `` cord-000248-zueoyesj 710 46 devolution devolution NN cord-000248-zueoyesj 710 47 ' ' '' cord-000248-zueoyesj 710 48 ' ' '' cord-000248-zueoyesj 710 49 from from IN cord-000248-zueoyesj 710 50 the the DT cord-000248-zueoyesj 710 51 normal normal JJ cord-000248-zueoyesj 710 52 type type NN cord-000248-zueoyesj 710 53 ) ) -RRB- cord-000248-zueoyesj 710 54 . . . cord-000248-zueoyesj 711 1 In in IN cord-000248-zueoyesj 711 2 our -PRON- PRP$ cord-000248-zueoyesj 711 3 informational informational JJ cord-000248-zueoyesj 711 4 perspective perspective NN cord-000248-zueoyesj 711 5 , , , cord-000248-zueoyesj 711 6 this this DT cord-000248-zueoyesj 711 7 would would MD cord-000248-zueoyesj 711 8 be be VB cord-000248-zueoyesj 711 9 analogous analogous JJ cord-000248-zueoyesj 711 10 to to IN cord-000248-zueoyesj 711 11 a a DT cord-000248-zueoyesj 711 12 situation situation NN cord-000248-zueoyesj 711 13 in in IN cord-000248-zueoyesj 711 14 which which WDT cord-000248-zueoyesj 711 15 the the DT cord-000248-zueoyesj 711 16 sender sender NN cord-000248-zueoyesj 711 17 of of IN cord-000248-zueoyesj 711 18 a a DT cord-000248-zueoyesj 711 19 message message NN cord-000248-zueoyesj 711 20 , , , cord-000248-zueoyesj 711 21 after after IN cord-000248-zueoyesj 711 22 some some DT cord-000248-zueoyesj 711 23 time time NN cord-000248-zueoyesj 711 24 , , , cord-000248-zueoyesj 711 25 decides decide VBZ cord-000248-zueoyesj 711 26 to to TO cord-000248-zueoyesj 711 27 increase increase VB cord-000248-zueoyesj 711 28 the the DT cord-000248-zueoyesj 711 29 size size NN cord-000248-zueoyesj 711 30 of of IN cord-000248-zueoyesj 711 31 the the DT cord-000248-zueoyesj 711 32 alphabet alphabet NN cord-000248-zueoyesj 711 33 of of IN cord-000248-zueoyesj 711 34 transmitted transmit VBN cord-000248-zueoyesj 711 35 symbols symbol NNS cord-000248-zueoyesj 711 36 . . . cord-000248-zueoyesj 712 1 Clearly clearly RB cord-000248-zueoyesj 712 2 , , , cord-000248-zueoyesj 712 3 it -PRON- PRP cord-000248-zueoyesj 712 4 is be VBZ cord-000248-zueoyesj 712 5 intuitive intuitive JJ cord-000248-zueoyesj 712 6 to to TO cord-000248-zueoyesj 712 7 think think VB cord-000248-zueoyesj 712 8 that that IN cord-000248-zueoyesj 712 9 the the DT cord-000248-zueoyesj 712 10 receiver receiver NN cord-000248-zueoyesj 712 11 would would MD cord-000248-zueoyesj 712 12 be be VB cord-000248-zueoyesj 712 13 in in IN cord-000248-zueoyesj 712 14 a a DT cord-000248-zueoyesj 712 15 situation situation NN cord-000248-zueoyesj 712 16 of of IN cord-000248-zueoyesj 712 17 increased increase VBN cord-000248-zueoyesj 712 18 Shannon Shannon NNP cord-000248-zueoyesj 712 19 Entropy Entropy NNP cord-000248-zueoyesj 712 20 . . . cord-000248-zueoyesj 713 1 However however RB cord-000248-zueoyesj 713 2 , , , cord-000248-zueoyesj 713 3 if if IN cord-000248-zueoyesj 713 4 the the DT cord-000248-zueoyesj 713 5 receiver receiver NN cord-000248-zueoyesj 713 6 is be VBZ cord-000248-zueoyesj 713 7 not not RB cord-000248-zueoyesj 713 8 aware aware JJ cord-000248-zueoyesj 713 9 of of IN cord-000248-zueoyesj 713 10 the the DT cord-000248-zueoyesj 713 11 new new JJ cord-000248-zueoyesj 713 12 symbols symbol NNS cord-000248-zueoyesj 713 13 ( ( -LRB- cord-000248-zueoyesj 713 14 or or CC cord-000248-zueoyesj 713 15 is be VBZ cord-000248-zueoyesj 713 16 not not RB cord-000248-zueoyesj 713 17 able able JJ cord-000248-zueoyesj 713 18 to to TO cord-000248-zueoyesj 713 19 detect detect VB cord-000248-zueoyesj 713 20 them -PRON- PRP cord-000248-zueoyesj 713 21 ) ) -RRB- cord-000248-zueoyesj 713 22 and and CC cord-000248-zueoyesj 713 23 some some DT cord-000248-zueoyesj 713 24 of of IN cord-000248-zueoyesj 713 25 the the DT cord-000248-zueoyesj 713 26 symbols symbol NNS cord-000248-zueoyesj 713 27 of of IN cord-000248-zueoyesj 713 28 the the DT cord-000248-zueoyesj 713 29 previous previous JJ cord-000248-zueoyesj 713 30 alphabet alphabet NN cord-000248-zueoyesj 713 31 are be VBP cord-000248-zueoyesj 713 32 no no RB cord-000248-zueoyesj 713 33 longer long RBR cord-000248-zueoyesj 713 34 used use VBN cord-000248-zueoyesj 713 35 , , , cord-000248-zueoyesj 713 36 the the DT cord-000248-zueoyesj 713 37 receiver receiver NN cord-000248-zueoyesj 713 38 would would MD cord-000248-zueoyesj 713 39 now now RB cord-000248-zueoyesj 713 40 perceive perceive VB cord-000248-zueoyesj 713 41 a a DT cord-000248-zueoyesj 713 42 reduction reduction NN cord-000248-zueoyesj 713 43 of of IN cord-000248-zueoyesj 713 44 Normalized Normalized NNP cord-000248-zueoyesj 713 45 Shannon Shannon NNP cord-000248-zueoyesj 713 46 Entropy Entropy NNP cord-000248-zueoyesj 713 47 , , , cord-000248-zueoyesj 713 48 observing observe VBG cord-000248-zueoyesj 713 49 an an DT cord-000248-zueoyesj 713 50 increasing increase VBG cord-000248-zueoyesj 713 51 order order NN cord-000248-zueoyesj 713 52 . . . cord-000248-zueoyesj 714 1 We -PRON- PRP cord-000248-zueoyesj 714 2 now now RB cord-000248-zueoyesj 714 3 borrow borrow VBP cord-000248-zueoyesj 714 4 an an DT cord-000248-zueoyesj 714 5 illustrative illustrative JJ cord-000248-zueoyesj 714 6 example example NN cord-000248-zueoyesj 714 7 from from IN cord-000248-zueoyesj 714 8 Landberg Landberg NNP cord-000248-zueoyesj 714 9 [ [ -LRB- cord-000248-zueoyesj 714 10 623 623 CD cord-000248-zueoyesj 714 11 ] ] -RRB- cord-000248-zueoyesj 714 12 , , , cord-000248-zueoyesj 714 13 but but CC cord-000248-zueoyesj 714 14 we -PRON- PRP cord-000248-zueoyesj 714 15 add add VBP cord-000248-zueoyesj 714 16 a a DT cord-000248-zueoyesj 714 17 twist twist NN cord-000248-zueoyesj 714 18 to to IN cord-000248-zueoyesj 714 19 this this DT cord-000248-zueoyesj 714 20 argument argument NN cord-000248-zueoyesj 714 21 for for IN cord-000248-zueoyesj 714 22 the the DT cord-000248-zueoyesj 714 23 purpose purpose NN cord-000248-zueoyesj 714 24 of of IN cord-000248-zueoyesj 714 25 illustrating illustrate VBG cord-000248-zueoyesj 714 26 this this DT cord-000248-zueoyesj 714 27 discussion discussion NN cord-000248-zueoyesj 714 28 . . . cord-000248-zueoyesj 715 1 Suppose suppose VB cord-000248-zueoyesj 715 2 we -PRON- PRP cord-000248-zueoyesj 715 3 have have VBP cord-000248-zueoyesj 715 4 a a DT cord-000248-zueoyesj 715 5 sender sender NN cord-000248-zueoyesj 715 6 transmitting transmit VBG cord-000248-zueoyesj 715 7 only only RB cord-000248-zueoyesj 715 8 two two CD cord-000248-zueoyesj 715 9 possible possible JJ cord-000248-zueoyesj 715 10 symbols symbol NNS cord-000248-zueoyesj 715 11 ( ( -LRB- cord-000248-zueoyesj 715 12 N n NN cord-000248-zueoyesj 715 13 = = SYM cord-000248-zueoyesj 715 14 2 2 CD cord-000248-zueoyesj 715 15 ) ) -RRB- cord-000248-zueoyesj 715 16 , , , cord-000248-zueoyesj 715 17 and and CC cord-000248-zueoyesj 715 18 we -PRON- PRP cord-000248-zueoyesj 715 19 will will MD cord-000248-zueoyesj 715 20 assume assume VB cord-000248-zueoyesj 715 21 that that IN cord-000248-zueoyesj 715 22 we -PRON- PRP cord-000248-zueoyesj 715 23 have have VBP cord-000248-zueoyesj 715 24 the the DT cord-000248-zueoyesj 715 25 same same JJ cord-000248-zueoyesj 715 26 probability probability NN cord-000248-zueoyesj 715 27 , , , cord-000248-zueoyesj 715 28 let let VB cord-000248-zueoyesj 715 29 's -PRON- PRP cord-000248-zueoyesj 715 30 denote denote VB cord-000248-zueoyesj 715 31 this this DT cord-000248-zueoyesj 715 32 as as IN cord-000248-zueoyesj 715 33 ( ( -LRB- cord-000248-zueoyesj 715 34 1/2 1/2 CD cord-000248-zueoyesj 715 35 , , , cord-000248-zueoyesj 715 36 1/2 1/2 CD cord-000248-zueoyesj 715 37 ) ) -RRB- cord-000248-zueoyesj 715 38 . . . cord-000248-zueoyesj 716 1 Then then RB cord-000248-zueoyesj 716 2 the the DT cord-000248-zueoyesj 716 3 average average JJ cord-000248-zueoyesj 716 4 expected expect VBN cord-000248-zueoyesj 716 5 surprisal surprisal NNP cord-000248-zueoyesj 716 6 ( ( -LRB- cord-000248-zueoyesj 716 7 Shannon Shannon NNP cord-000248-zueoyesj 716 8 Entropy Entropy NNP cord-000248-zueoyesj 716 9 ) ) -RRB- cord-000248-zueoyesj 716 10 , , , cord-000248-zueoyesj 716 11 is be VBZ cord-000248-zueoyesj 716 12 H(X H(X NNP cord-000248-zueoyesj 716 13 ) ) -RRB- cord-000248-zueoyesj 716 14 = = . cord-000248-zueoyesj 717 1 1 1 CD cord-000248-zueoyesj 717 2 , , , cord-000248-zueoyesj 717 3 and and CC cord-000248-zueoyesj 717 4 the the DT cord-000248-zueoyesj 717 5 Normalized Normalized NNP cord-000248-zueoyesj 717 6 Shannon Shannon NNP cord-000248-zueoyesj 717 7 Entropy Entropy NNP cord-000248-zueoyesj 717 8 is be VBZ cord-000248-zueoyesj 717 9 also also RB cord-000248-zueoyesj 717 10 equal equal JJ cord-000248-zueoyesj 717 11 to to IN cord-000248-zueoyesj 717 12 one one CD cord-000248-zueoyesj 717 13 . . . cord-000248-zueoyesj 718 1 Assume assume VB cord-000248-zueoyesj 718 2 now now RB cord-000248-zueoyesj 718 3 that that IN cord-000248-zueoyesj 718 4 now now RB cord-000248-zueoyesj 718 5 our -PRON- PRP$ cord-000248-zueoyesj 718 6 sender sender NN cord-000248-zueoyesj 718 7 starts start VBZ cord-000248-zueoyesj 718 8 to to TO cord-000248-zueoyesj 718 9 transmit transmit VB cord-000248-zueoyesj 718 10 using use VBG cord-000248-zueoyesj 718 11 another another DT cord-000248-zueoyesj 718 12 symbol symbol NN cord-000248-zueoyesj 718 13 , , , cord-000248-zueoyesj 718 14 so so IN cord-000248-zueoyesj 718 15 that that IN cord-000248-zueoyesj 718 16 we -PRON- PRP cord-000248-zueoyesj 718 17 now now RB cord-000248-zueoyesj 718 18 have have VBP cord-000248-zueoyesj 718 19 theoretical theoretical JJ cord-000248-zueoyesj 718 20 probabilities probability NNS cord-000248-zueoyesj 718 21 of of IN cord-000248-zueoyesj 718 22 ( ( -LRB- cord-000248-zueoyesj 718 23 0.5 0.5 CD cord-000248-zueoyesj 718 24 , , , cord-000248-zueoyesj 718 25 0.25 0.25 CD cord-000248-zueoyesj 718 26 , , , cord-000248-zueoyesj 718 27 0.25 0.25 CD cord-000248-zueoyesj 718 28 ) ) -RRB- cord-000248-zueoyesj 718 29 . . . cord-000248-zueoyesj 719 1 Then then RB cord-000248-zueoyesj 719 2 N n NN cord-000248-zueoyesj 719 3 = = SYM cord-000248-zueoyesj 719 4 3 3 CD cord-000248-zueoyesj 719 5 , , , cord-000248-zueoyesj 719 6 and and CC cord-000248-zueoyesj 719 7 the the DT cord-000248-zueoyesj 719 8 average average JJ cord-000248-zueoyesj 719 9 expected expect VBN cord-000248-zueoyesj 719 10 surprisal surprisal NNP cord-000248-zueoyesj 719 11 increases increase VBZ cord-000248-zueoyesj 719 12 to to IN cord-000248-zueoyesj 719 13 H(X9 H(X9 NNP cord-000248-zueoyesj 719 14 ) ) -RRB- cord-000248-zueoyesj 719 15 = = NFP cord-000248-zueoyesj 720 1 1.5 1.5 CD cord-000248-zueoyesj 721 1 the the DT cord-000248-zueoyesj 721 2 Normalized Normalized NNP cord-000248-zueoyesj 721 3 Shannon Shannon NNP cord-000248-zueoyesj 721 4 Entropy Entropy NNP cord-000248-zueoyesj 721 5 is be VBZ cord-000248-zueoyesj 721 6 now now RB cord-000248-zueoyesj 721 7 1.5 1.5 CD cord-000248-zueoyesj 721 8 / / SYM cord-000248-zueoyesj 721 9 log log NN cord-000248-zueoyesj 721 10 2 2 CD cord-000248-zueoyesj 721 11 ( ( -LRB- cord-000248-zueoyesj 721 12 3 3 CD cord-000248-zueoyesj 721 13 ) ) -RRB- cord-000248-zueoyesj 721 14 = = SYM cord-000248-zueoyesj 721 15 0.946 0.946 CD cord-000248-zueoyesj 721 16 … … NFP cord-000248-zueoyesj 721 17 ( ( -LRB- cord-000248-zueoyesj 721 18 a a DT cord-000248-zueoyesj 721 19 reduction reduction NN cord-000248-zueoyesj 721 20 ) ) -RRB- cord-000248-zueoyesj 721 21 . . . cord-000248-zueoyesj 722 1 This this DT cord-000248-zueoyesj 722 2 ' ' `` cord-000248-zueoyesj 722 3 third third JJ cord-000248-zueoyesj 722 4 symbol symbol NN cord-000248-zueoyesj 722 5 ' ' '' cord-000248-zueoyesj 722 6 could could MD cord-000248-zueoyesj 722 7 actually actually RB cord-000248-zueoyesj 722 8 represent represent VB cord-000248-zueoyesj 722 9 a a DT cord-000248-zueoyesj 722 10 new new JJ cord-000248-zueoyesj 722 11 ' ' '' cord-000248-zueoyesj 722 12 ' ' '' cord-000248-zueoyesj 722 13 molecular molecular JJ cord-000248-zueoyesj 722 14 species specie NNS cord-000248-zueoyesj 722 15 ' ' '' cord-000248-zueoyesj 722 16 ' ' '' cord-000248-zueoyesj 722 17 or or CC cord-000248-zueoyesj 722 18 a a DT cord-000248-zueoyesj 722 19 protein protein NN cord-000248-zueoyesj 722 20 isoform isoform NN cord-000248-zueoyesj 722 21 that that WDT cord-000248-zueoyesj 722 22 would would MD cord-000248-zueoyesj 722 23 not not RB cord-000248-zueoyesj 722 24 be be VB cord-000248-zueoyesj 722 25 normally normally RB cord-000248-zueoyesj 722 26 expressed express VBN cord-000248-zueoyesj 722 27 in in IN cord-000248-zueoyesj 722 28 that that DT cord-000248-zueoyesj 722 29 tissue tissue NN cord-000248-zueoyesj 722 30 type type NN cord-000248-zueoyesj 722 31 [ [ -LRB- cord-000248-zueoyesj 722 32 624 624 CD cord-000248-zueoyesj 722 33 ] ] -RRB- cord-000248-zueoyesj 722 34 , , , cord-000248-zueoyesj 722 35 or or CC cord-000248-zueoyesj 722 36 even even RB cord-000248-zueoyesj 722 37 something something NN cord-000248-zueoyesj 722 38 entirely entirely RB cord-000248-zueoyesj 722 39 new new JJ cord-000248-zueoyesj 722 40 , , , cord-000248-zueoyesj 722 41 product product NN cord-000248-zueoyesj 722 42 of of IN cord-000248-zueoyesj 722 43 a a DT cord-000248-zueoyesj 722 44 mutational mutational JJ cord-000248-zueoyesj 722 45 / / SYM cord-000248-zueoyesj 722 46 deletional deletional JJ cord-000248-zueoyesj 722 47 event event NN cord-000248-zueoyesj 722 48 . . . cord-000248-zueoyesj 723 1 If if IN cord-000248-zueoyesj 723 2 our -PRON- PRP$ cord-000248-zueoyesj 723 3 hypothetical hypothetical JJ cord-000248-zueoyesj 723 4 high high JJ cord-000248-zueoyesj 723 5 - - HYPH cord-000248-zueoyesj 723 6 throughput throughput NN cord-000248-zueoyesj 723 7 technology technology NN cord-000248-zueoyesj 723 8 can can MD cord-000248-zueoyesj 723 9 only only RB cord-000248-zueoyesj 723 10 be be VB cord-000248-zueoyesj 723 11 detecting detect VBG cord-000248-zueoyesj 723 12 the the DT cord-000248-zueoyesj 723 13 first first JJ cord-000248-zueoyesj 723 14 two two CD cord-000248-zueoyesj 723 15 symbols symbol NNS cord-000248-zueoyesj 723 16 , , , cord-000248-zueoyesj 723 17 and and CC cord-000248-zueoyesj 723 18 following follow VBG cord-000248-zueoyesj 723 19 the the DT cord-000248-zueoyesj 723 20 conventions convention NNS cord-000248-zueoyesj 723 21 we -PRON- PRP cord-000248-zueoyesj 723 22 established establish VBD cord-000248-zueoyesj 723 23 in in IN cord-000248-zueoyesj 723 24 the the DT cord-000248-zueoyesj 723 25 ' ' `` cord-000248-zueoyesj 723 26 Materials Materials NNPS cord-000248-zueoyesj 723 27 and and CC cord-000248-zueoyesj 723 28 Methods Methods NNPS cord-000248-zueoyesj 723 29 ' ' POS cord-000248-zueoyesj 723 30 section section NN cord-000248-zueoyesj 723 31 , , , cord-000248-zueoyesj 723 32 we -PRON- PRP cord-000248-zueoyesj 723 33 would would MD cord-000248-zueoyesj 723 34 be be VB cord-000248-zueoyesj 723 35 ' ' `` cord-000248-zueoyesj 723 36 ' ' `` cord-000248-zueoyesj 723 37 observing observe VBG cord-000248-zueoyesj 723 38 ' ' '' cord-000248-zueoyesj 723 39 ' ' '' cord-000248-zueoyesj 723 40 frequencies frequency NNS cord-000248-zueoyesj 723 41 of of IN cord-000248-zueoyesj 723 42 ( ( -LRB- cord-000248-zueoyesj 723 43 2/3,1/ 2/3,1/ CD cord-000248-zueoyesj 723 44 3 3 CD cord-000248-zueoyesj 723 45 ) ) -RRB- cord-000248-zueoyesj 723 46 since since IN cord-000248-zueoyesj 723 47 the the DT cord-000248-zueoyesj 723 48 other other JJ cord-000248-zueoyesj 723 49 events event NNS cord-000248-zueoyesj 723 50 would would MD cord-000248-zueoyesj 723 51 not not RB cord-000248-zueoyesj 723 52 be be VB cord-000248-zueoyesj 723 53 detected detect VBN cord-000248-zueoyesj 723 54 with with IN cord-000248-zueoyesj 723 55 our -PRON- PRP$ cord-000248-zueoyesj 723 56 equipment equipment NN cord-000248-zueoyesj 723 57 . . . cord-000248-zueoyesj 724 1 As as IN cord-000248-zueoyesj 724 2 a a DT cord-000248-zueoyesj 724 3 consequence consequence NN cord-000248-zueoyesj 724 4 , , , cord-000248-zueoyesj 724 5 the the DT cord-000248-zueoyesj 724 6 both both PDT cord-000248-zueoyesj 724 7 the the DT cord-000248-zueoyesj 724 8 log log NN cord-000248-zueoyesj 724 9 2 2 CD cord-000248-zueoyesj 724 10 ( ( -LRB- cord-000248-zueoyesj 724 11 2 2 CD cord-000248-zueoyesj 724 12 ) ) -RRB- cord-000248-zueoyesj 724 13 = = SYM cord-000248-zueoyesj 724 14 1 1 CD cord-000248-zueoyesj 724 15 , , , cord-000248-zueoyesj 724 16 Shannon Shannon NNP cord-000248-zueoyesj 724 17 Entropy Entropy NNP cord-000248-zueoyesj 724 18 and and CC cord-000248-zueoyesj 724 19 the the DT cord-000248-zueoyesj 724 20 Normalized Normalized NNP cord-000248-zueoyesj 724 21 Shannon Shannon NNP cord-000248-zueoyesj 724 22 Entropy Entropy NNP cord-000248-zueoyesj 724 23 are be VBP cord-000248-zueoyesj 724 24 both both RB cord-000248-zueoyesj 724 25 reduced reduce VBN cord-000248-zueoyesj 724 26 to to IN cord-000248-zueoyesj 724 27 0.918293 0.918293 CD cord-000248-zueoyesj 724 28 . . . cord-000248-zueoyesj 725 1 Obviously obviously RB cord-000248-zueoyesj 725 2 , , , cord-000248-zueoyesj 725 3 we -PRON- PRP cord-000248-zueoyesj 725 4 can can MD cord-000248-zueoyesj 725 5 not not RB cord-000248-zueoyesj 725 6 count count VB cord-000248-zueoyesj 725 7 what what WP cord-000248-zueoyesj 725 8 we -PRON- PRP cord-000248-zueoyesj 725 9 can can MD cord-000248-zueoyesj 725 10 not not RB cord-000248-zueoyesj 725 11 observe observe VB cord-000248-zueoyesj 725 12 . . . cord-000248-zueoyesj 726 1 As as IN cord-000248-zueoyesj 726 2 a a DT cord-000248-zueoyesj 726 3 consequence consequence NN cord-000248-zueoyesj 726 4 , , , cord-000248-zueoyesj 726 5 a a DT cord-000248-zueoyesj 726 6 degenerating degenerate VBG cord-000248-zueoyesj 726 7 transcriptional transcriptional JJ cord-000248-zueoyesj 726 8 profile profile NN cord-000248-zueoyesj 726 9 that that WDT cord-000248-zueoyesj 726 10 produces produce VBZ cord-000248-zueoyesj 726 11 novel novel JJ cord-000248-zueoyesj 726 12 molecular molecular JJ cord-000248-zueoyesj 726 13 species specie NNS cord-000248-zueoyesj 726 14 , , , cord-000248-zueoyesj 726 15 and and CC cord-000248-zueoyesj 726 16 at at IN cord-000248-zueoyesj 726 17 the the DT cord-000248-zueoyesj 726 18 same same JJ cord-000248-zueoyesj 726 19 time time NN cord-000248-zueoyesj 726 20 reduces reduce VBZ cord-000248-zueoyesj 726 21 those those DT cord-000248-zueoyesj 726 22 which which WDT cord-000248-zueoyesj 726 23 we -PRON- PRP cord-000248-zueoyesj 726 24 can can MD cord-000248-zueoyesj 726 25 not not RB cord-000248-zueoyesj 726 26 measure measure VB cord-000248-zueoyesj 726 27 with with IN cord-000248-zueoyesj 726 28 a a DT cord-000248-zueoyesj 726 29 particular particular JJ cord-000248-zueoyesj 726 30 technology technology NN cord-000248-zueoyesj 726 31 , , , cord-000248-zueoyesj 726 32 would would MD cord-000248-zueoyesj 726 33 look look VB cord-000248-zueoyesj 726 34 increasingly increasingly RB cord-000248-zueoyesj 726 35 more more RBR cord-000248-zueoyesj 726 36 ordered order VBN cord-000248-zueoyesj 726 37 . . . cord-000248-zueoyesj 727 1 We -PRON- PRP cord-000248-zueoyesj 727 2 envision envision VBP cord-000248-zueoyesj 727 3 that that IN cord-000248-zueoyesj 727 4 physicists physicist NNS cord-000248-zueoyesj 727 5 may may MD cord-000248-zueoyesj 727 6 find find VB cord-000248-zueoyesj 727 7 here here RB cord-000248-zueoyesj 727 8 a a DT cord-000248-zueoyesj 727 9 fertile fertile JJ cord-000248-zueoyesj 727 10 ground ground NN cord-000248-zueoyesj 727 11 to to TO cord-000248-zueoyesj 727 12 explore explore VB cord-000248-zueoyesj 727 13 new new JJ cord-000248-zueoyesj 727 14 ideas idea NNS cord-000248-zueoyesj 727 15 and and CC cord-000248-zueoyesj 727 16 attempt attempt VB cord-000248-zueoyesj 727 17 novel novel JJ cord-000248-zueoyesj 727 18 mathematical mathematical JJ cord-000248-zueoyesj 727 19 formalisms formalism NNS cord-000248-zueoyesj 727 20 for for IN cord-000248-zueoyesj 727 21 cancer cancer NN cord-000248-zueoyesj 727 22 progression progression NN cord-000248-zueoyesj 727 23 from from IN cord-000248-zueoyesj 727 24 the the DT cord-000248-zueoyesj 727 25 realm realm NN cord-000248-zueoyesj 727 26 of of IN cord-000248-zueoyesj 727 27 finite finite JJ cord-000248-zueoyesj 727 28 - - HYPH cord-000248-zueoyesj 727 29 state state NN cord-000248-zueoyesj 727 30 thermodynamics thermodynamic NNS cord-000248-zueoyesj 727 31 [ [ -LRB- cord-000248-zueoyesj 727 32 625 625 CD cord-000248-zueoyesj 727 33 ] ] -RRB- cord-000248-zueoyesj 727 34 and and CC cord-000248-zueoyesj 727 35 in in IN cord-000248-zueoyesj 727 36 particular particular JJ cord-000248-zueoyesj 727 37 endorevesible endorevesible JJ cord-000248-zueoyesj 727 38 processes process NNS cord-000248-zueoyesj 727 39 [ [ -LRB- cord-000248-zueoyesj 727 40 626 626 CD cord-000248-zueoyesj 727 41 ] ] -RRB- cord-000248-zueoyesj 727 42 and and CC cord-000248-zueoyesj 727 43 endoreversible endoreversible JJ cord-000248-zueoyesj 727 44 thermodynamics thermodynamic NNS cord-000248-zueoyesj 727 45 [ [ -LRB- cord-000248-zueoyesj 727 46 627 627 CD cord-000248-zueoyesj 727 47 ] ] -RRB- cord-000248-zueoyesj 727 48 . . . cord-000248-zueoyesj 728 1 Some some DT cord-000248-zueoyesj 728 2 molecular molecular JJ cord-000248-zueoyesj 728 3 alterations alteration NNS cord-000248-zueoyesj 728 4 would would MD cord-000248-zueoyesj 728 5 then then RB cord-000248-zueoyesj 728 6 be be VB cord-000248-zueoyesj 728 7 part part NN cord-000248-zueoyesj 728 8 of of IN cord-000248-zueoyesj 728 9 the the DT cord-000248-zueoyesj 728 10 set set NN cord-000248-zueoyesj 728 11 of of IN cord-000248-zueoyesj 728 12 revesible revesible JJ cord-000248-zueoyesj 728 13 processes process NNS cord-000248-zueoyesj 728 14 that that WDT cord-000248-zueoyesj 728 15 could could MD cord-000248-zueoyesj 728 16 occur occur VB cord-000248-zueoyesj 728 17 in in IN cord-000248-zueoyesj 728 18 a a DT cord-000248-zueoyesj 728 19 cancer cancer NN cord-000248-zueoyesj 728 20 cell cell NN cord-000248-zueoyesj 728 21 , , , cord-000248-zueoyesj 728 22 while while IN cord-000248-zueoyesj 728 23 other other JJ cord-000248-zueoyesj 728 24 processes process NNS cord-000248-zueoyesj 728 25 like like IN cord-000248-zueoyesj 728 26 aneuploidy aneuploidy NN cord-000248-zueoyesj 728 27 or or CC cord-000248-zueoyesj 728 28 gene gene NN cord-000248-zueoyesj 728 29 fusions fusion NNS cord-000248-zueoyesj 728 30 could could MD cord-000248-zueoyesj 728 31 be be VB cord-000248-zueoyesj 728 32 truly truly RB cord-000248-zueoyesj 728 33 ' ' `` cord-000248-zueoyesj 728 34 ' ' `` cord-000248-zueoyesj 728 35 irreversible irreversible JJ cord-000248-zueoyesj 728 36 genetic genetic JJ cord-000248-zueoyesj 728 37 switches switch NNS cord-000248-zueoyesj 728 38 ' ' POS cord-000248-zueoyesj 728 39 ' ' '' cord-000248-zueoyesj 728 40 associated associate VBN cord-000248-zueoyesj 728 41 with with IN cord-000248-zueoyesj 728 42 cancer cancer NN cord-000248-zueoyesj 728 43 progression progression NN cord-000248-zueoyesj 728 44 [ [ -LRB- cord-000248-zueoyesj 728 45 628 628 CD cord-000248-zueoyesj 728 46 ] ] -RRB- cord-000248-zueoyesj 728 47 . . . cord-000248-zueoyesj 729 1 If if IN cord-000248-zueoyesj 729 2 we -PRON- PRP cord-000248-zueoyesj 729 3 assume assume VBP cord-000248-zueoyesj 729 4 that that IN cord-000248-zueoyesj 729 5 the the DT cord-000248-zueoyesj 729 6 process process NN cord-000248-zueoyesj 729 7 is be VBZ cord-000248-zueoyesj 729 8 slow slow JJ cord-000248-zueoyesj 729 9 ( ( -LRB- cord-000248-zueoyesj 729 10 i.e. i.e. FW cord-000248-zueoyesj 729 11 the the DT cord-000248-zueoyesj 729 12 times time NNS cord-000248-zueoyesj 729 13 required require VBN cord-000248-zueoyesj 729 14 for for IN cord-000248-zueoyesj 729 15 significant significant JJ cord-000248-zueoyesj 729 16 variations variation NNS cord-000248-zueoyesj 729 17 of of IN cord-000248-zueoyesj 729 18 the the DT cord-000248-zueoyesj 729 19 transcriptome transcriptome NN cord-000248-zueoyesj 729 20 's 's POS cord-000248-zueoyesj 729 21 profile profile NN cord-000248-zueoyesj 729 22 is be VBZ cord-000248-zueoyesj 729 23 large large JJ cord-000248-zueoyesj 729 24 in in IN cord-000248-zueoyesj 729 25 comparison comparison NN cord-000248-zueoyesj 729 26 with with IN cord-000248-zueoyesj 729 27 the the DT cord-000248-zueoyesj 729 28 cell cell NN cord-000248-zueoyesj 729 29 's 's POS cord-000248-zueoyesj 729 30 processes process NNS cord-000248-zueoyesj 729 31 time time NN cord-000248-zueoyesj 729 32 scales scale NNS cord-000248-zueoyesj 729 33 ) ) -RRB- cord-000248-zueoyesj 729 34 , , , cord-000248-zueoyesj 729 35 and and CC cord-000248-zueoyesj 729 36 follwing follwe VBG cord-000248-zueoyesj 729 37 the the DT cord-000248-zueoyesj 729 38 results result NNS cord-000248-zueoyesj 729 39 of of IN cord-000248-zueoyesj 729 40 Spirkl Spirkl NNP cord-000248-zueoyesj 729 41 and and CC cord-000248-zueoyesj 729 42 Reis Reis NNP cord-000248-zueoyesj 729 43 [ [ -LRB- cord-000248-zueoyesj 729 44 626 626 CD cord-000248-zueoyesj 729 45 ] ] -RRB- cord-000248-zueoyesj 729 46 , , , cord-000248-zueoyesj 729 47 it -PRON- PRP cord-000248-zueoyesj 729 48 may may MD cord-000248-zueoyesj 729 49 be be VB cord-000248-zueoyesj 729 50 possible possible JJ cord-000248-zueoyesj 729 51 that that IN cord-000248-zueoyesj 729 52 we -PRON- PRP cord-000248-zueoyesj 729 53 have have VBP cord-000248-zueoyesj 729 54 a a DT cord-000248-zueoyesj 729 55 constant constant JJ cord-000248-zueoyesj 729 56 entropy entropy NN cord-000248-zueoyesj 729 57 production production NN cord-000248-zueoyesj 729 58 rate rate NN cord-000248-zueoyesj 729 59 exists exist VBZ cord-000248-zueoyesj 729 60 during during IN cord-000248-zueoyesj 729 61 cancer cancer NN cord-000248-zueoyesj 729 62 progression progression NN cord-000248-zueoyesj 729 63 leading lead VBG cord-000248-zueoyesj 729 64 to to IN cord-000248-zueoyesj 729 65 Hauptmann Hauptmann NNP cord-000248-zueoyesj 729 66 's 's POS cord-000248-zueoyesj 729 67 ' ' `` cord-000248-zueoyesj 729 68 ' ' `` cord-000248-zueoyesj 729 69 entropic entropic JJ cord-000248-zueoyesj 729 70 devolution devolution NN cord-000248-zueoyesj 729 71 ' ' '' cord-000248-zueoyesj 729 72 ' ' '' cord-000248-zueoyesj 729 73 [ [ -LRB- cord-000248-zueoyesj 729 74 629 629 CD cord-000248-zueoyesj 729 75 ] ] -RRB- cord-000248-zueoyesj 729 76 . . . cord-000248-zueoyesj 730 1 Hauptmann Hauptmann NNP cord-000248-zueoyesj 730 2 sees see VBZ cord-000248-zueoyesj 730 3 a a DT cord-000248-zueoyesj 730 4 malignant malignant JJ cord-000248-zueoyesj 730 5 tumour tumour NN cord-000248-zueoyesj 730 6 as as IN cord-000248-zueoyesj 730 7 ' ' '' cord-000248-zueoyesj 730 8 ' ' '' cord-000248-zueoyesj 730 9 a a DT cord-000248-zueoyesj 730 10 dissipative dissipative JJ cord-000248-zueoyesj 730 11 structure structure NN cord-000248-zueoyesj 730 12 arising arise VBG cord-000248-zueoyesj 730 13 within within IN cord-000248-zueoyesj 730 14 the the DT cord-000248-zueoyesj 730 15 thermodynamical thermodynamical JJ cord-000248-zueoyesj 730 16 open open JJ cord-000248-zueoyesj 730 17 system system NN cord-000248-zueoyesj 730 18 of of IN cord-000248-zueoyesj 730 19 the the DT cord-000248-zueoyesj 730 20 human human JJ cord-000248-zueoyesj 730 21 body body NN cord-000248-zueoyesj 730 22 ' ' '' cord-000248-zueoyesj 730 23 ' ' '' cord-000248-zueoyesj 730 24 that that WDT cord-000248-zueoyesj 730 25 starts start VBZ cord-000248-zueoyesj 730 26 when when WRB cord-000248-zueoyesj 730 27 ' ' '' cord-000248-zueoyesj 730 28 ' ' '' cord-000248-zueoyesj 730 29 a a DT cord-000248-zueoyesj 730 30 localized localized JJ cord-000248-zueoyesj 730 31 surplus surplus NN cord-000248-zueoyesj 730 32 of of IN cord-000248-zueoyesj 730 33 energy energy NN cord-000248-zueoyesj 730 34 exists exist VBZ cord-000248-zueoyesj 730 35 and and CC cord-000248-zueoyesj 730 36 there there EX cord-000248-zueoyesj 730 37 is be VBZ cord-000248-zueoyesj 730 38 no no DT cord-000248-zueoyesj 730 39 possibility possibility NN cord-000248-zueoyesj 730 40 to to TO cord-000248-zueoyesj 730 41 export export NN cord-000248-zueoyesj 730 42 entropy entropy NN cord-000248-zueoyesj 730 43 . . . cord-000248-zueoyesj 731 1 An an DT cord-000248-zueoyesj 731 2 energetic energetic JJ cord-000248-zueoyesj 731 3 overload overload NN cord-000248-zueoyesj 731 4 in in IN cord-000248-zueoyesj 731 5 most most JJS cord-000248-zueoyesj 731 6 malignant malignant JJ cord-000248-zueoyesj 731 7 cells cell NNS cord-000248-zueoyesj 731 8 is be VBZ cord-000248-zueoyesj 731 9 indicated indicate VBN cord-000248-zueoyesj 731 10 by by IN cord-000248-zueoyesj 731 11 their -PRON- PRP$ cord-000248-zueoyesj 731 12 abnormally abnormally RB cord-000248-zueoyesj 731 13 high high JJ cord-000248-zueoyesj 731 14 phosphorylation phosphorylation NN cord-000248-zueoyesj 731 15 state state NN cord-000248-zueoyesj 731 16 . . . cord-000248-zueoyesj 731 17 ' ' '' cord-000248-zueoyesj 731 18 ' ' '' cord-000248-zueoyesj 732 1 His -PRON- PRP$ cord-000248-zueoyesj 732 2 perspective perspective NN cord-000248-zueoyesj 732 3 , , , cord-000248-zueoyesj 732 4 preceeded preceede VBN cord-000248-zueoyesj 732 5 in in IN cord-000248-zueoyesj 732 6 part part NN cord-000248-zueoyesj 732 7 by by IN cord-000248-zueoyesj 732 8 Dimitrov Dimitrov NNP cord-000248-zueoyesj 732 9 [ [ -LRB- cord-000248-zueoyesj 732 10 630 630 CD cord-000248-zueoyesj 732 11 ] ] -RRB- cord-000248-zueoyesj 732 12 , , , cord-000248-zueoyesj 732 13 Klimek Klimek NNP cord-000248-zueoyesj 732 14 [ [ -LRB- cord-000248-zueoyesj 732 15 631 631 CD cord-000248-zueoyesj 732 16 , , , cord-000248-zueoyesj 732 17 632 632 CD cord-000248-zueoyesj 732 18 ] ] -RRB- cord-000248-zueoyesj 732 19 and and CC cord-000248-zueoyesj 732 20 Marinescu Marinescu NNP cord-000248-zueoyesj 732 21 and and CC cord-000248-zueoyesj 732 22 Viculetz Viculetz NNP cord-000248-zueoyesj 732 23 [ [ -LRB- cord-000248-zueoyesj 732 24 633 633 CD cord-000248-zueoyesj 732 25 ] ] -RRB- cord-000248-zueoyesj 732 26 might may MD cord-000248-zueoyesj 732 27 then then RB cord-000248-zueoyesj 732 28 fit fit VB cord-000248-zueoyesj 732 29 well well RB cord-000248-zueoyesj 732 30 an an DT cord-000248-zueoyesj 732 31 endoreversible endoreversible JJ cord-000248-zueoyesj 732 32 thermodynamic thermodynamic JJ cord-000248-zueoyesj 732 33 formalism formalism NN cord-000248-zueoyesj 732 34 . . . cord-000248-zueoyesj 733 1 Hauptmann Hauptmann NNP cord-000248-zueoyesj 733 2 says say VBZ cord-000248-zueoyesj 733 3 in in IN cord-000248-zueoyesj 733 4 [ [ -LRB- cord-000248-zueoyesj 733 5 629 629 CD cord-000248-zueoyesj 733 6 ] ] -RRB- cord-000248-zueoyesj 733 7 '' '' '' cord-000248-zueoyesj 734 1 I -PRON- PRP cord-000248-zueoyesj 734 2 believe believe VBP cord-000248-zueoyesj 734 3 that that IN cord-000248-zueoyesj 734 4 cancer cancer NN cord-000248-zueoyesj 734 5 is be VBZ cord-000248-zueoyesj 734 6 a a DT cord-000248-zueoyesj 734 7 special special JJ cord-000248-zueoyesj 734 8 kind kind NN cord-000248-zueoyesj 734 9 of of IN cord-000248-zueoyesj 734 10 adaptation adaptation NN cord-000248-zueoyesj 734 11 to to IN cord-000248-zueoyesj 734 12 energetic energetic JJ cord-000248-zueoyesj 734 13 overload overload NN cord-000248-zueoyesj 734 14 , , , cord-000248-zueoyesj 734 15 characterized characterize VBN cord-000248-zueoyesj 734 16 by by IN cord-000248-zueoyesj 734 17 multiplication multiplication NN cord-000248-zueoyesj 734 18 and and CC cord-000248-zueoyesj 734 19 mutation mutation NN cord-000248-zueoyesj 734 20 of of IN cord-000248-zueoyesj 734 21 genomic genomic JJ cord-000248-zueoyesj 734 22 DNA dna NN cord-000248-zueoyesj 734 23 ( ( -LRB- cord-000248-zueoyesj 734 24 generation generation NN cord-000248-zueoyesj 734 25 of of IN cord-000248-zueoyesj 734 26 new new JJ cord-000248-zueoyesj 734 27 biomolecules biomolecule NNS cord-000248-zueoyesj 734 28 which which WDT cord-000248-zueoyesj 734 29 enhance enhance VBP cord-000248-zueoyesj 734 30 the the DT cord-000248-zueoyesj 734 31 probability probability NN cord-000248-zueoyesj 734 32 of of IN cord-000248-zueoyesj 734 33 survival survival NN cord-000248-zueoyesj 734 34 under under IN cord-000248-zueoyesj 734 35 harmful harmful JJ cord-000248-zueoyesj 734 36 conditions condition NNS cord-000248-zueoyesj 734 37 ) ) -RRB- cord-000248-zueoyesj 734 38 , , , cord-000248-zueoyesj 734 39 and and CC cord-000248-zueoyesj 734 40 by by IN cord-000248-zueoyesj 734 41 chiral chiral JJ cord-000248-zueoyesj 734 42 alterations alteration NNS cord-000248-zueoyesj 734 43 ( ( -LRB- cord-000248-zueoyesj 734 44 reduction reduction NN cord-000248-zueoyesj 734 45 of of IN cord-000248-zueoyesj 734 46 entropy entropy NN cord-000248-zueoyesj 734 47 by by IN cord-000248-zueoyesj 734 48 entrapping entrap VBG cord-000248-zueoyesj 734 49 energy energy NN cord-000248-zueoyesj 734 50 ) ) -RRB- cord-000248-zueoyesj 734 51 leading lead VBG cord-000248-zueoyesj 734 52 to to IN cord-000248-zueoyesj 734 53 abnormal abnormal JJ cord-000248-zueoyesj 734 54 configurated configurated JJ cord-000248-zueoyesj 734 55 biomolecules biomolecule NNS cord-000248-zueoyesj 734 56 . . . cord-000248-zueoyesj 735 1 In in IN cord-000248-zueoyesj 735 2 this this DT cord-000248-zueoyesj 735 3 regard regard NN cord-000248-zueoyesj 735 4 the the DT cord-000248-zueoyesj 735 5 genetic genetic JJ cord-000248-zueoyesj 735 6 alterations alteration NNS cord-000248-zueoyesj 735 7 are be VBP cord-000248-zueoyesj 735 8 probably probably RB cord-000248-zueoyesj 735 9 secondary secondary JJ cord-000248-zueoyesj 735 10 changes change NNS cord-000248-zueoyesj 735 11 . . . cord-000248-zueoyesj 736 1 Cancer cancer NN cord-000248-zueoyesj 736 2 serves serve VBZ cord-000248-zueoyesj 736 3 to to TO cord-000248-zueoyesj 736 4 dissipate dissipate VB cord-000248-zueoyesj 736 5 energy energy NN cord-000248-zueoyesj 736 6 in in IN cord-000248-zueoyesj 736 7 a a DT cord-000248-zueoyesj 736 8 type type NN cord-000248-zueoyesj 736 9 of of IN cord-000248-zueoyesj 736 10 developmental developmental JJ cord-000248-zueoyesj 736 11 process process NN cord-000248-zueoyesj 736 12 but but CC cord-000248-zueoyesj 736 13 one one CD cord-000248-zueoyesj 736 14 in in IN cord-000248-zueoyesj 736 15 which which WDT cord-000248-zueoyesj 736 16 the the DT cord-000248-zueoyesj 736 17 results result NNS cord-000248-zueoyesj 736 18 are be VBP cord-000248-zueoyesj 736 19 harmful harmful JJ cord-000248-zueoyesj 736 20 to to IN cord-000248-zueoyesj 736 21 the the DT cord-000248-zueoyesj 736 22 whole whole JJ cord-000248-zueoyesj 736 23 organism organism NN cord-000248-zueoyesj 736 24 : : : cord-000248-zueoyesj 736 25 an an DT cord-000248-zueoyesj 736 26 entropic entropic JJ cord-000248-zueoyesj 736 27 devolution devolution NN cord-000248-zueoyesj 736 28 . . . cord-000248-zueoyesj 736 29 ' ' '' cord-000248-zueoyesj 736 30 ' ' '' cord-000248-zueoyesj 737 1 This this DT cord-000248-zueoyesj 737 2 thermodynamical thermodynamical JJ cord-000248-zueoyesj 737 3 perspective perspective NN cord-000248-zueoyesj 737 4 is be VBZ cord-000248-zueoyesj 737 5 now now RB cord-000248-zueoyesj 737 6 worth worth JJ cord-000248-zueoyesj 737 7 exploring explore VBG cord-000248-zueoyesj 737 8 and and CC cord-000248-zueoyesj 737 9 we -PRON- PRP cord-000248-zueoyesj 737 10 will will MD cord-000248-zueoyesj 737 11 discuss discuss VB cord-000248-zueoyesj 737 12 it -PRON- PRP cord-000248-zueoyesj 737 13 in in IN cord-000248-zueoyesj 737 14 this this DT cord-000248-zueoyesj 737 15 context context NN cord-000248-zueoyesj 737 16 . . . cord-000248-zueoyesj 738 1 Assuming assume VBG cord-000248-zueoyesj 738 2 that that IN cord-000248-zueoyesj 738 3 a a DT cord-000248-zueoyesj 738 4 cancer cancer NN cord-000248-zueoyesj 738 5 cell cell NN cord-000248-zueoyesj 738 6 is be VBZ cord-000248-zueoyesj 738 7 in in IN cord-000248-zueoyesj 738 8 a a DT cord-000248-zueoyesj 738 9 state state NN cord-000248-zueoyesj 738 10 of of IN cord-000248-zueoyesj 738 11 ' ' `` cord-000248-zueoyesj 738 12 ' ' `` cord-000248-zueoyesj 738 13 energy energy NN cord-000248-zueoyesj 738 14 overload overload NN cord-000248-zueoyesj 738 15 ' ' '' cord-000248-zueoyesj 738 16 ' ' '' cord-000248-zueoyesj 738 17 , , , cord-000248-zueoyesj 738 18 without without IN cord-000248-zueoyesj 738 19 '' '' '' cord-000248-zueoyesj 739 1 the the DT cord-000248-zueoyesj 739 2 possibility possibility NN cord-000248-zueoyesj 739 3 of of IN cord-000248-zueoyesj 739 4 exporting export VBG cord-000248-zueoyesj 739 5 entropy entropy NN cord-000248-zueoyesj 739 6 ' ' '' cord-000248-zueoyesj 739 7 ' ' '' cord-000248-zueoyesj 739 8 , , , cord-000248-zueoyesj 739 9 could could MD cord-000248-zueoyesj 739 10 it -PRON- PRP cord-000248-zueoyesj 739 11 lead lead VB cord-000248-zueoyesj 739 12 to to IN cord-000248-zueoyesj 739 13 some some DT cord-000248-zueoyesj 739 14 type type NN cord-000248-zueoyesj 739 15 of of IN cord-000248-zueoyesj 739 16 ' ' '' cord-000248-zueoyesj 739 17 ' ' `` cord-000248-zueoyesj 739 18 genetic genetic JJ cord-000248-zueoyesj 739 19 alterations alteration NNS cord-000248-zueoyesj 739 20 ' ' '' cord-000248-zueoyesj 739 21 ' ' '' cord-000248-zueoyesj 739 22 ? ? . cord-000248-zueoyesj 740 1 Which which WDT cord-000248-zueoyesj 740 2 key key NN cord-000248-zueoyesj 740 3 mechanisms mechanism NNS cord-000248-zueoyesj 740 4 might may MD cord-000248-zueoyesj 740 5 be be VB cord-000248-zueoyesj 740 6 impaired impair VBN cord-000248-zueoyesj 740 7 ? ? . cord-000248-zueoyesj 741 1 What what WDT cord-000248-zueoyesj 741 2 consequences consequence NNS cord-000248-zueoyesj 741 3 is be VBZ cord-000248-zueoyesj 741 4 this this DT cord-000248-zueoyesj 741 5 ' ' `` cord-000248-zueoyesj 741 6 ' ' `` cord-000248-zueoyesj 741 7 system system NN cord-000248-zueoyesj 741 8 ' ' '' cord-000248-zueoyesj 741 9 ' ' '' cord-000248-zueoyesj 741 10 delivering delivering NN cord-000248-zueoyesj 741 11 ? ? . cord-000248-zueoyesj 742 1 Could Could MD cord-000248-zueoyesj 742 2 this this DT cord-000248-zueoyesj 742 3 be be VB cord-000248-zueoyesj 742 4 another another DT cord-000248-zueoyesj 742 5 hallmark hallmark NN cord-000248-zueoyesj 742 6 for for IN cord-000248-zueoyesj 742 7 oncosystems oncosystem NNS cord-000248-zueoyesj 742 8 indentification indentification NNP cord-000248-zueoyesj 742 9 ? ? . cord-000248-zueoyesj 743 1 In in IN cord-000248-zueoyesj 743 2 1871 1871 CD cord-000248-zueoyesj 743 3 , , , cord-000248-zueoyesj 743 4 in in IN cord-000248-zueoyesj 743 5 this this DT cord-000248-zueoyesj 743 6 book book NN cord-000248-zueoyesj 743 7 called call VBD cord-000248-zueoyesj 743 8 ' ' '' cord-000248-zueoyesj 743 9 ' ' '' cord-000248-zueoyesj 743 10 Theory Theory NNP cord-000248-zueoyesj 743 11 of of IN cord-000248-zueoyesj 743 12 Heat Heat NNP cord-000248-zueoyesj 743 13 ' ' '' cord-000248-zueoyesj 743 14 ' ' '' cord-000248-zueoyesj 743 15 , , , cord-000248-zueoyesj 743 16 Maxwell Maxwell NNP cord-000248-zueoyesj 743 17 speculated speculate VBD cord-000248-zueoyesj 743 18 the the DT cord-000248-zueoyesj 743 19 idea idea NN cord-000248-zueoyesj 743 20 of of IN cord-000248-zueoyesj 743 21 ' ' `` cord-000248-zueoyesj 743 22 ' ' '' cord-000248-zueoyesj 743 23 a a DT cord-000248-zueoyesj 743 24 being being NN cord-000248-zueoyesj 743 25 , , , cord-000248-zueoyesj 743 26 who who WP cord-000248-zueoyesj 743 27 can can MD cord-000248-zueoyesj 743 28 see see VB cord-000248-zueoyesj 743 29 the the DT cord-000248-zueoyesj 743 30 individual individual JJ cord-000248-zueoyesj 743 31 molecules molecule NNS cord-000248-zueoyesj 743 32 ' ' '' cord-000248-zueoyesj 743 33 ' ' '' cord-000248-zueoyesj 743 34 and and CC cord-000248-zueoyesj 743 35 who who WP cord-000248-zueoyesj 743 36 has have VBZ cord-000248-zueoyesj 743 37 enough enough JJ cord-000248-zueoyesj 743 38 reactive reactive JJ cord-000248-zueoyesj 743 39 intelligence intelligence NN cord-000248-zueoyesj 743 40 to to TO cord-000248-zueoyesj 743 41 open open VB cord-000248-zueoyesj 743 42 and and CC cord-000248-zueoyesj 743 43 close close VB cord-000248-zueoyesj 743 44 a a DT cord-000248-zueoyesj 743 45 unique unique JJ cord-000248-zueoyesj 743 46 small small JJ cord-000248-zueoyesj 743 47 hole hole NN cord-000248-zueoyesj 743 48 existing exist VBG cord-000248-zueoyesj 743 49 between between IN cord-000248-zueoyesj 743 50 two two CD cord-000248-zueoyesj 743 51 communicating communicate VBG cord-000248-zueoyesj 743 52 vessels vessel NNS cord-000248-zueoyesj 743 53 ( ( -LRB- cord-000248-zueoyesj 743 54 called call VBN cord-000248-zueoyesj 743 55 ' ' `` cord-000248-zueoyesj 743 56 A a NN cord-000248-zueoyesj 743 57 ' ' '' cord-000248-zueoyesj 743 58 and and CC cord-000248-zueoyesj 743 59 ' ' `` cord-000248-zueoyesj 743 60 B b NN cord-000248-zueoyesj 743 61 ' ' '' cord-000248-zueoyesj 743 62 ) ) -RRB- cord-000248-zueoyesj 743 63 . . . cord-000248-zueoyesj 744 1 An an DT cord-000248-zueoyesj 744 2 ideal ideal JJ cord-000248-zueoyesj 744 3 gas gas NN cord-000248-zueoyesj 744 4 filled fill VBD cord-000248-zueoyesj 744 5 both both DT cord-000248-zueoyesj 744 6 vessels vessel NNS cord-000248-zueoyesj 744 7 , , , cord-000248-zueoyesj 744 8 so so IN cord-000248-zueoyesj 744 9 that that IN cord-000248-zueoyesj 744 10 starting start VBG cord-000248-zueoyesj 744 11 at at IN cord-000248-zueoyesj 744 12 uniform uniform JJ cord-000248-zueoyesj 744 13 temperature temperature NN cord-000248-zueoyesj 744 14 the the DT cord-000248-zueoyesj 744 15 intelligent intelligent JJ cord-000248-zueoyesj 744 16 being being NN cord-000248-zueoyesj 744 17 could could MD cord-000248-zueoyesj 744 18 observe observe VB cord-000248-zueoyesj 744 19 the the DT cord-000248-zueoyesj 744 20 molecules molecule NNS cord-000248-zueoyesj 744 21 and and CC cord-000248-zueoyesj 744 22 close close VB cord-000248-zueoyesj 744 23 and and CC cord-000248-zueoyesj 744 24 open open VB cord-000248-zueoyesj 744 25 the the DT cord-000248-zueoyesj 744 26 hole hole NN cord-000248-zueoyesj 744 27 accordingly accordingly RB cord-000248-zueoyesj 744 28 to to IN cord-000248-zueoyesj 744 29 a a DT cord-000248-zueoyesj 744 30 mission mission NN cord-000248-zueoyesj 744 31 : : : cord-000248-zueoyesj 744 32 ' ' '' cord-000248-zueoyesj 744 33 ' ' '' cord-000248-zueoyesj 744 34 to to TO cord-000248-zueoyesj 744 35 allow allow VB cord-000248-zueoyesj 744 36 only only RB cord-000248-zueoyesj 744 37 the the DT cord-000248-zueoyesj 744 38 swifter swift JJR cord-000248-zueoyesj 744 39 molecules molecule NNS cord-000248-zueoyesj 744 40 to to TO cord-000248-zueoyesj 744 41 pass pass VB cord-000248-zueoyesj 744 42 from from IN cord-000248-zueoyesj 744 43 A a NN cord-000248-zueoyesj 744 44 to to IN cord-000248-zueoyesj 744 45 B b NN cord-000248-zueoyesj 744 46 , , , cord-000248-zueoyesj 744 47 and and CC cord-000248-zueoyesj 744 48 only only RB cord-000248-zueoyesj 744 49 the the DT cord-000248-zueoyesj 744 50 slower slow JJR cord-000248-zueoyesj 744 51 ones one NNS cord-000248-zueoyesj 744 52 pass pass VBP cord-000248-zueoyesj 744 53 from from IN cord-000248-zueoyesj 744 54 B b NN cord-000248-zueoyesj 744 55 to to IN cord-000248-zueoyesj 744 56 A. a. NN cord-000248-zueoyesj 744 57 ' ' '' cord-000248-zueoyesj 744 58 ' ' '' cord-000248-zueoyesj 745 1 The the DT cord-000248-zueoyesj 745 2 being being NN cord-000248-zueoyesj 745 3 , , , cord-000248-zueoyesj 745 4 ' ' '' cord-000248-zueoyesj 745 5 ' ' '' cord-000248-zueoyesj 745 6 without without IN cord-000248-zueoyesj 745 7 expenditure expenditure NN cord-000248-zueoyesj 745 8 of of IN cord-000248-zueoyesj 745 9 work work NN cord-000248-zueoyesj 745 10 raise raise VBP cord-000248-zueoyesj 745 11 the the DT cord-000248-zueoyesj 745 12 temperature temperature NN cord-000248-zueoyesj 745 13 of of IN cord-000248-zueoyesj 745 14 B b NN cord-000248-zueoyesj 745 15 and and CC cord-000248-zueoyesj 745 16 lower lower VB cord-000248-zueoyesj 745 17 that that DT cord-000248-zueoyesj 745 18 of of IN cord-000248-zueoyesj 745 19 A a DT cord-000248-zueoyesj 745 20 in in IN cord-000248-zueoyesj 745 21 contradiction contradiction NN cord-000248-zueoyesj 745 22 to to IN cord-000248-zueoyesj 745 23 the the DT cord-000248-zueoyesj 745 24 second second JJ cord-000248-zueoyesj 745 25 law law NN cord-000248-zueoyesj 745 26 of of IN cord-000248-zueoyesj 745 27 thermodynamics thermodynamic NNS cord-000248-zueoyesj 745 28 . . . cord-000248-zueoyesj 745 29 ' ' '' cord-000248-zueoyesj 746 1 ' ' '' cord-000248-zueoyesj 747 1 The the DT cord-000248-zueoyesj 747 2 ability ability NN cord-000248-zueoyesj 747 3 of of IN cord-000248-zueoyesj 747 4 the the DT cord-000248-zueoyesj 747 5 ' ' `` cord-000248-zueoyesj 747 6 ' ' '' cord-000248-zueoyesj 747 7 being be VBG cord-000248-zueoyesj 747 8 ' ' '' cord-000248-zueoyesj 747 9 ' ' '' cord-000248-zueoyesj 747 10 to to TO cord-000248-zueoyesj 747 11 use use VB cord-000248-zueoyesj 747 12 observable observable JJ cord-000248-zueoyesj 747 13 information information NN cord-000248-zueoyesj 747 14 about about IN cord-000248-zueoyesj 747 15 the the DT cord-000248-zueoyesj 747 16 system system NN cord-000248-zueoyesj 747 17 to to TO cord-000248-zueoyesj 747 18 lower lower VB cord-000248-zueoyesj 747 19 the the DT cord-000248-zueoyesj 747 20 thermodynamical thermodynamical JJ cord-000248-zueoyesj 747 21 entropy entropy NN cord-000248-zueoyesj 747 22 has have VBZ cord-000248-zueoyesj 747 23 motivated motivate VBN cord-000248-zueoyesj 747 24 many many JJ cord-000248-zueoyesj 747 25 articles article NNS cord-000248-zueoyesj 747 26 in in IN cord-000248-zueoyesj 747 27 physics physics NN cord-000248-zueoyesj 747 28 and and CC cord-000248-zueoyesj 747 29 fuelled fuel VBD cord-000248-zueoyesj 747 30 the the DT cord-000248-zueoyesj 747 31 imagination imagination NN cord-000248-zueoyesj 747 32 of of IN cord-000248-zueoyesj 747 33 many many JJ cord-000248-zueoyesj 747 34 since since IN cord-000248-zueoyesj 747 35 it -PRON- PRP cord-000248-zueoyesj 747 36 was be VBD cord-000248-zueoyesj 747 37 originally originally RB cord-000248-zueoyesj 747 38 introduced introduce VBN cord-000248-zueoyesj 747 39 by by IN cord-000248-zueoyesj 747 40 Mawell Mawell NNP cord-000248-zueoyesj 747 41 , , , cord-000248-zueoyesj 747 42 and and CC cord-000248-zueoyesj 747 43 named name VBN cord-000248-zueoyesj 747 44 as as IN cord-000248-zueoyesj 747 45 ' ' `` cord-000248-zueoyesj 747 46 ' ' `` cord-000248-zueoyesj 747 47 demon demon NN cord-000248-zueoyesj 747 48 ' ' '' cord-000248-zueoyesj 747 49 ' ' '' cord-000248-zueoyesj 747 50 by by IN cord-000248-zueoyesj 747 51 Thomson Thomson NNP cord-000248-zueoyesj 747 52 three three CD cord-000248-zueoyesj 747 53 years year NNS cord-000248-zueoyesj 747 54 later later RB cord-000248-zueoyesj 747 55 [ [ -LRB- cord-000248-zueoyesj 747 56 622 622 CD cord-000248-zueoyesj 747 57 ] ] -RRB- cord-000248-zueoyesj 747 58 . . . cord-000248-zueoyesj 748 1 An an DT cord-000248-zueoyesj 748 2 excellent excellent JJ cord-000248-zueoyesj 748 3 collection collection NN cord-000248-zueoyesj 748 4 of of IN cord-000248-zueoyesj 748 5 articles article NNS cord-000248-zueoyesj 748 6 until until IN cord-000248-zueoyesj 748 7 1990 1990 CD cord-000248-zueoyesj 748 8 [ [ -LRB- cord-000248-zueoyesj 748 9 634 634 CD cord-000248-zueoyesj 748 10 , , , cord-000248-zueoyesj 748 11 635 635 CD cord-000248-zueoyesj 748 12 , , , cord-000248-zueoyesj 748 13 636 636 CD cord-000248-zueoyesj 748 14 , , , cord-000248-zueoyesj 748 15 637 637 CD cord-000248-zueoyesj 748 16 , , , cord-000248-zueoyesj 748 17 638 638 CD cord-000248-zueoyesj 748 18 , , , cord-000248-zueoyesj 748 19 639 639 CD cord-000248-zueoyesj 748 20 , , , cord-000248-zueoyesj 748 21 640 640 CD cord-000248-zueoyesj 748 22 , , , cord-000248-zueoyesj 748 23 641 641 CD cord-000248-zueoyesj 748 24 , , , cord-000248-zueoyesj 748 25 642 642 CD cord-000248-zueoyesj 748 26 , , , cord-000248-zueoyesj 748 27 643 643 CD cord-000248-zueoyesj 748 28 , , , cord-000248-zueoyesj 748 29 644 644 CD cord-000248-zueoyesj 748 30 ] ] -RRB- cord-000248-zueoyesj 748 31 was be VBD cord-000248-zueoyesj 748 32 edited edit VBN cord-000248-zueoyesj 748 33 by by IN cord-000248-zueoyesj 748 34 Leff Leff NNP cord-000248-zueoyesj 748 35 and and CC cord-000248-zueoyesj 748 36 Rex Rex NNP cord-000248-zueoyesj 748 37 [ [ -LRB- cord-000248-zueoyesj 748 38 645 645 CD cord-000248-zueoyesj 748 39 ] ] -RRB- cord-000248-zueoyesj 748 40 . . . cord-000248-zueoyesj 749 1 The the DT cord-000248-zueoyesj 749 2 Maxwell Maxwell NNP cord-000248-zueoyesj 749 3 ' ' POS cord-000248-zueoyesj 749 4 ' ' `` cord-000248-zueoyesj 749 5 demon demon NN cord-000248-zueoyesj 749 6 ' ' '' cord-000248-zueoyesj 749 7 ' ' '' cord-000248-zueoyesj 749 8 , , , cord-000248-zueoyesj 749 9 far far RB cord-000248-zueoyesj 749 10 from from IN cord-000248-zueoyesj 749 11 being be VBG cord-000248-zueoyesj 749 12 ' ' `` cord-000248-zueoyesj 749 13 ' ' `` cord-000248-zueoyesj 749 14 exorcised exorcise VBN cord-000248-zueoyesj 749 15 ' ' '' cord-000248-zueoyesj 749 16 ' ' '' cord-000248-zueoyesj 749 17 from from IN cord-000248-zueoyesj 749 18 Physics Physics NNP cord-000248-zueoyesj 749 19 , , , cord-000248-zueoyesj 749 20 still still RB cord-000248-zueoyesj 749 21 inspires inspire VBZ cord-000248-zueoyesj 749 22 interesting interesting JJ cord-000248-zueoyesj 749 23 new new JJ cord-000248-zueoyesj 749 24 perspectives perspective NNS cord-000248-zueoyesj 749 25 [ [ -LRB- cord-000248-zueoyesj 749 26 634,635,636,637,638,639,640,641,642,643,644,646,647 634,635,636,637,638,639,640,641,642,643,644,646,647 NNP cord-000248-zueoyesj 749 27 ] ] -RRB- cord-000248-zueoyesj 749 28 . . . cord-000248-zueoyesj 750 1 In in IN cord-000248-zueoyesj 750 2 a a DT cord-000248-zueoyesj 750 3 letter letter NN cord-000248-zueoyesj 750 4 to to IN cord-000248-zueoyesj 750 5 Peter Peter NNP cord-000248-zueoyesj 750 6 Guthrie Guthrie NNP cord-000248-zueoyesj 750 7 Tait Tait NNP cord-000248-zueoyesj 750 8 , , , cord-000248-zueoyesj 750 9 Maxwell Maxwell NNP cord-000248-zueoyesj 750 10 writes write VBZ cord-000248-zueoyesj 750 11 about about IN cord-000248-zueoyesj 750 12 the the DT cord-000248-zueoyesj 750 13 ' ' `` cord-000248-zueoyesj 750 14 ' ' `` cord-000248-zueoyesj 750 15 demons demon NNS cord-000248-zueoyesj 750 16 ' ' '' cord-000248-zueoyesj 750 17 ' ' '' cord-000248-zueoyesj 750 18 : : : cord-000248-zueoyesj 750 19 ' ' '' cord-000248-zueoyesj 750 20 ' ' '' cord-000248-zueoyesj 750 21 Is be VBZ cord-000248-zueoyesj 750 22 the the DT cord-000248-zueoyesj 750 23 production production NN cord-000248-zueoyesj 750 24 of of IN cord-000248-zueoyesj 750 25 an an DT cord-000248-zueoyesj 750 26 inequality inequality NN cord-000248-zueoyesj 750 27 of of IN cord-000248-zueoyesj 750 28 temperature temperature NN cord-000248-zueoyesj 750 29 their -PRON- PRP$ cord-000248-zueoyesj 750 30 only only JJ cord-000248-zueoyesj 750 31 occupation occupation NN cord-000248-zueoyesj 750 32 ? ? . cord-000248-zueoyesj 751 1 No no UH cord-000248-zueoyesj 751 2 , , , cord-000248-zueoyesj 751 3 for for IN cord-000248-zueoyesj 751 4 less less RBR cord-000248-zueoyesj 751 5 intelligent intelligent JJ cord-000248-zueoyesj 751 6 demons demon NNS cord-000248-zueoyesj 751 7 can can MD cord-000248-zueoyesj 751 8 produce produce VB cord-000248-zueoyesj 751 9 a a DT cord-000248-zueoyesj 751 10 difference difference NN cord-000248-zueoyesj 751 11 in in IN cord-000248-zueoyesj 751 12 pressure pressure NN cord-000248-zueoyesj 751 13 as as RB cord-000248-zueoyesj 751 14 well well RB cord-000248-zueoyesj 751 15 as as IN cord-000248-zueoyesj 751 16 temperature temperature NN cord-000248-zueoyesj 751 17 by by IN cord-000248-zueoyesj 751 18 merely merely RB cord-000248-zueoyesj 751 19 allowing allow VBG cord-000248-zueoyesj 751 20 all all DT cord-000248-zueoyesj 751 21 particles particle NNS cord-000248-zueoyesj 751 22 going go VBG cord-000248-zueoyesj 751 23 in in IN cord-000248-zueoyesj 751 24 one one CD cord-000248-zueoyesj 751 25 direction direction NN cord-000248-zueoyesj 751 26 while while IN cord-000248-zueoyesj 751 27 stopping stop VBG cord-000248-zueoyesj 751 28 all all PDT cord-000248-zueoyesj 751 29 those those DT cord-000248-zueoyesj 751 30 going go VBG cord-000248-zueoyesj 751 31 the the DT cord-000248-zueoyesj 751 32 other other JJ cord-000248-zueoyesj 751 33 way way NN cord-000248-zueoyesj 751 34 . . . cord-000248-zueoyesj 752 1 This this DT cord-000248-zueoyesj 752 2 reduces reduce VBZ cord-000248-zueoyesj 752 3 the the DT cord-000248-zueoyesj 752 4 demon demon NN cord-000248-zueoyesj 752 5 to to IN cord-000248-zueoyesj 752 6 a a DT cord-000248-zueoyesj 752 7 valve valve NN cord-000248-zueoyesj 752 8 . . . cord-000248-zueoyesj 753 1 As as IN cord-000248-zueoyesj 753 2 such such JJ cord-000248-zueoyesj 753 3 value value NN cord-000248-zueoyesj 753 4 him -PRON- PRP cord-000248-zueoyesj 753 5 . . . cord-000248-zueoyesj 754 1 Call call VB cord-000248-zueoyesj 754 2 him -PRON- PRP cord-000248-zueoyesj 754 3 no no RB cord-000248-zueoyesj 754 4 more more RBR cord-000248-zueoyesj 754 5 a a DT cord-000248-zueoyesj 754 6 demon demon NN cord-000248-zueoyesj 754 7 but but CC cord-000248-zueoyesj 754 8 a a DT cord-000248-zueoyesj 754 9 valve valve NN cord-000248-zueoyesj 754 10 like like IN cord-000248-zueoyesj 754 11 that that DT cord-000248-zueoyesj 754 12 of of IN cord-000248-zueoyesj 754 13 the the DT cord-000248-zueoyesj 754 14 hydraulic hydraulic JJ cord-000248-zueoyesj 754 15 ram ram NN cord-000248-zueoyesj 754 16 , , , cord-000248-zueoyesj 754 17 suppose suppose VB cord-000248-zueoyesj 754 18 . . . cord-000248-zueoyesj 754 19 ' ' '' cord-000248-zueoyesj 754 20 ' ' '' cord-000248-zueoyesj 755 1 ( ( -LRB- cord-000248-zueoyesj 755 2 from from IN cord-000248-zueoyesj 755 3 [ [ -LRB- cord-000248-zueoyesj 755 4 645 645 CD cord-000248-zueoyesj 755 5 ] ] -RRB- cord-000248-zueoyesj 755 6 , , , cord-000248-zueoyesj 755 7 p. p. NN cord-000248-zueoyesj 755 8 6 6 CD cord-000248-zueoyesj 755 9 ) ) -RRB- cord-000248-zueoyesj 755 10 . . . cord-000248-zueoyesj 756 1 Maxwell Maxwell NNP cord-000248-zueoyesj 756 2 gives give VBZ cord-000248-zueoyesj 756 3 again again RB cord-000248-zueoyesj 756 4 here here RB cord-000248-zueoyesj 756 5 a a DT cord-000248-zueoyesj 756 6 sign sign NN cord-000248-zueoyesj 756 7 of of IN cord-000248-zueoyesj 756 8 his -PRON- PRP$ cord-000248-zueoyesj 756 9 brilliant brilliant JJ cord-000248-zueoyesj 756 10 mind mind NN cord-000248-zueoyesj 756 11 , , , cord-000248-zueoyesj 756 12 ' ' '' cord-000248-zueoyesj 756 13 ' ' `` cord-000248-zueoyesj 756 14 degrading degrade VBG cord-000248-zueoyesj 756 15 ' ' '' cord-000248-zueoyesj 756 16 ' ' '' cord-000248-zueoyesj 756 17 the the DT cord-000248-zueoyesj 756 18 demon demon NN cord-000248-zueoyesj 756 19 to to IN cord-000248-zueoyesj 756 20 a a DT cord-000248-zueoyesj 756 21 valve valve NN cord-000248-zueoyesj 756 22 , , , cord-000248-zueoyesj 756 23 but but CC cord-000248-zueoyesj 756 24 also also RB cord-000248-zueoyesj 756 25 offering offer VBG cord-000248-zueoyesj 756 26 an an DT cord-000248-zueoyesj 756 27 inspiring inspiring JJ cord-000248-zueoyesj 756 28 perspective perspective NN cord-000248-zueoyesj 756 29 to to IN cord-000248-zueoyesj 756 30 oncosystems oncosystem VBZ cord-000248-zueoyesj 756 31 research research NN cord-000248-zueoyesj 756 32 . . . cord-000248-zueoyesj 757 1 Which which WDT cord-000248-zueoyesj 757 2 types type NNS cord-000248-zueoyesj 757 3 of of IN cord-000248-zueoyesj 757 4 mechanisms mechanism NNS cord-000248-zueoyesj 757 5 exist exist VBP cord-000248-zueoyesj 757 6 in in IN cord-000248-zueoyesj 757 7 biological biological JJ cord-000248-zueoyesj 757 8 systems system NNS cord-000248-zueoyesj 757 9 , , , cord-000248-zueoyesj 757 10 and and CC cord-000248-zueoyesj 757 11 particularly particularly RB cord-000248-zueoyesj 757 12 in in IN cord-000248-zueoyesj 757 13 individual individual JJ cord-000248-zueoyesj 757 14 cells cell NNS cord-000248-zueoyesj 757 15 , , , cord-000248-zueoyesj 757 16 to to TO cord-000248-zueoyesj 757 17 control control VB cord-000248-zueoyesj 757 18 these these DT cord-000248-zueoyesj 757 19 differential differential JJ cord-000248-zueoyesj 757 20 values value NNS cord-000248-zueoyesj 757 21 in in IN cord-000248-zueoyesj 757 22 key key JJ cord-000248-zueoyesj 757 23 parameters parameter NNS cord-000248-zueoyesj 757 24 ? ? . cord-000248-zueoyesj 758 1 Could Could MD cord-000248-zueoyesj 758 2 changes change NNS cord-000248-zueoyesj 758 3 of of IN cord-000248-zueoyesj 758 4 key key JJ cord-000248-zueoyesj 758 5 physical physical JJ cord-000248-zueoyesj 758 6 parameters parameter NNS cord-000248-zueoyesj 758 7 for for IN cord-000248-zueoyesj 758 8 metabolic metabolic JJ cord-000248-zueoyesj 758 9 processes process NNS cord-000248-zueoyesj 758 10 of of IN cord-000248-zueoyesj 758 11 the the DT cord-000248-zueoyesj 758 12 cytoplasm cytoplasm NN cord-000248-zueoyesj 758 13 and and CC cord-000248-zueoyesj 758 14 cell cell NN cord-000248-zueoyesj 758 15 's 's POS cord-000248-zueoyesj 758 16 organelles organelle NNS cord-000248-zueoyesj 758 17 like like IN cord-000248-zueoyesj 758 18 temperature temperature NN cord-000248-zueoyesj 758 19 , , , cord-000248-zueoyesj 758 20 volume volume NN cord-000248-zueoyesj 758 21 , , , cord-000248-zueoyesj 758 22 pH ph NN cord-000248-zueoyesj 758 23 or or CC cord-000248-zueoyesj 758 24 electrochemical electrochemical JJ cord-000248-zueoyesj 758 25 potentials potential NNS cord-000248-zueoyesj 758 26 be be VB cord-000248-zueoyesj 758 27 also also RB cord-000248-zueoyesj 758 28 implicated implicate VBN cord-000248-zueoyesj 758 29 in in IN cord-000248-zueoyesj 758 30 cancer cancer NN cord-000248-zueoyesj 758 31 progression progression NN cord-000248-zueoyesj 758 32 ? ? . cord-000248-zueoyesj 759 1 The the DT cord-000248-zueoyesj 759 2 influence influence NN cord-000248-zueoyesj 759 3 of of IN cord-000248-zueoyesj 759 4 temperature temperature NN cord-000248-zueoyesj 759 5 may may MD cord-000248-zueoyesj 759 6 be be VB cord-000248-zueoyesj 759 7 giving give VBG cord-000248-zueoyesj 759 8 an an DT cord-000248-zueoyesj 759 9 interesting interesting JJ cord-000248-zueoyesj 759 10 working working NN cord-000248-zueoyesj 759 11 hypothesis hypothesis NN cord-000248-zueoyesj 759 12 for for IN cord-000248-zueoyesj 759 13 further further JJ cord-000248-zueoyesj 759 14 research research NN cord-000248-zueoyesj 759 15 . . . cord-000248-zueoyesj 760 1 What what WP cord-000248-zueoyesj 760 2 are be VBP cord-000248-zueoyesj 760 3 the the DT cord-000248-zueoyesj 760 4 consequences consequence NNS cord-000248-zueoyesj 760 5 if if IN cord-000248-zueoyesj 760 6 cancer cancer NN cord-000248-zueoyesj 760 7 cells cell NNS cord-000248-zueoyesj 760 8 are be VBP cord-000248-zueoyesj 760 9 a a DT cord-000248-zueoyesj 760 10 different different JJ cord-000248-zueoyesj 760 11 type type NN cord-000248-zueoyesj 760 12 of of IN cord-000248-zueoyesj 760 13 open open JJ cord-000248-zueoyesj 760 14 system system NN cord-000248-zueoyesj 760 15 which which WDT cord-000248-zueoyesj 760 16 also also RB cord-000248-zueoyesj 760 17 operates operate VBZ cord-000248-zueoyesj 760 18 at at IN cord-000248-zueoyesj 760 19 a a DT cord-000248-zueoyesj 760 20 different different JJ cord-000248-zueoyesj 760 21 temperature temperature NN cord-000248-zueoyesj 760 22 than than IN cord-000248-zueoyesj 760 23 a a DT cord-000248-zueoyesj 760 24 normal normal JJ cord-000248-zueoyesj 760 25 cell cell NN cord-000248-zueoyesj 760 26 ? ? . cord-000248-zueoyesj 761 1 Butler Butler NNP cord-000248-zueoyesj 761 2 et et NNP cord-000248-zueoyesj 761 3 al al NNP cord-000248-zueoyesj 761 4 . . NNP cord-000248-zueoyesj 761 5 have have VBP cord-000248-zueoyesj 761 6 studied study VBN cord-000248-zueoyesj 761 7 p53 p53 NN cord-000248-zueoyesj 761 8 and and CC cord-000248-zueoyesj 761 9 they -PRON- PRP cord-000248-zueoyesj 761 10 argue argue VBP cord-000248-zueoyesj 761 11 that that IN cord-000248-zueoyesj 761 12 at at IN cord-000248-zueoyesj 761 13 temperatures temperature NNS cord-000248-zueoyesj 761 14 above above IN cord-000248-zueoyesj 761 15 37 37 CD cord-000248-zueoyesj 761 16 degrees degree NNS cord-000248-zueoyesj 761 17 centigrades centigrade NNS cord-000248-zueoyesj 762 1 wild wild JJ cord-000248-zueoyesj 762 2 - - HYPH cord-000248-zueoyesj 762 3 type type NN cord-000248-zueoyesj 762 4 p53 p53 NN cord-000248-zueoyesj 762 5 spontaneously spontaneously RB cord-000248-zueoyesj 762 6 loses lose VBZ cord-000248-zueoyesj 762 7 DNA dna NN cord-000248-zueoyesj 762 8 binding binding NN cord-000248-zueoyesj 762 9 activity activity NN cord-000248-zueoyesj 762 10 . . . cord-000248-zueoyesj 763 1 While while IN cord-000248-zueoyesj 763 2 folding fold VBG cord-000248-zueoyesj 763 3 kinetics kinetic NNS cord-000248-zueoyesj 763 4 do do VBP cord-000248-zueoyesj 763 5 not not RB cord-000248-zueoyesj 763 6 show show VB cord-000248-zueoyesj 763 7 important important JJ cord-000248-zueoyesj 763 8 changes change NNS cord-000248-zueoyesj 763 9 in in IN cord-000248-zueoyesj 763 10 a a DT cord-000248-zueoyesj 763 11 range range NN cord-000248-zueoyesj 763 12 from from IN cord-000248-zueoyesj 763 13 5 5 CD cord-000248-zueoyesj 763 14 to to TO cord-000248-zueoyesj 763 15 35 35 CD cord-000248-zueoyesj 763 16 degrees degree NNS cord-000248-zueoyesj 763 17 C c NN cord-000248-zueoyesj 763 18 , , , cord-000248-zueoyesj 763 19 the the DT cord-000248-zueoyesj 763 20 unfolding unfold VBG cord-000248-zueoyesj 763 21 rates rate NNS cord-000248-zueoyesj 763 22 accelerate accelerate VBP cord-000248-zueoyesj 763 23 10,000-fold 10,000-fold CD cord-000248-zueoyesj 763 24 . . . cord-000248-zueoyesj 764 1 This this DT cord-000248-zueoyesj 764 2 leads lead VBZ cord-000248-zueoyesj 764 3 to to IN cord-000248-zueoyesj 764 4 a a DT cord-000248-zueoyesj 764 5 somewhat somewhat RB cord-000248-zueoyesj 764 6 unexpected unexpected JJ cord-000248-zueoyesj 764 7 mechanism mechanism NN cord-000248-zueoyesj 764 8 of of IN cord-000248-zueoyesj 764 9 p53 p53 NN cord-000248-zueoyesj 764 10 inactivation inactivation NN cord-000248-zueoyesj 764 11 . . . cord-000248-zueoyesj 765 1 It -PRON- PRP cord-000248-zueoyesj 765 2 could could MD cord-000248-zueoyesj 765 3 be be VB cord-000248-zueoyesj 765 4 the the DT cord-000248-zueoyesj 765 5 case case NN cord-000248-zueoyesj 765 6 that that IN cord-000248-zueoyesj 765 7 a a DT cord-000248-zueoyesj 765 8 fraction fraction NN cord-000248-zueoyesj 765 9 of of IN cord-000248-zueoyesj 765 10 p53 p53 NN cord-000248-zueoyesj 765 11 molecules molecule NNS cord-000248-zueoyesj 765 12 become become VBP cord-000248-zueoyesj 765 13 trapped trap VBN cord-000248-zueoyesj 765 14 in in IN cord-000248-zueoyesj 765 15 misfolded misfolded JJ cord-000248-zueoyesj 765 16 conformations conformation NNS cord-000248-zueoyesj 765 17 with with IN cord-000248-zueoyesj 765 18 each each DT cord-000248-zueoyesj 765 19 folding folding NN cord-000248-zueoyesj 765 20 - - HYPH cord-000248-zueoyesj 765 21 unfolding unfold VBG cord-000248-zueoyesj 765 22 cycle cycle NN cord-000248-zueoyesj 765 23 due due IN cord-000248-zueoyesj 765 24 to to IN cord-000248-zueoyesj 765 25 the the DT cord-000248-zueoyesj 765 26 increased increase VBN cord-000248-zueoyesj 765 27 frequency frequency NN cord-000248-zueoyesj 765 28 of of IN cord-000248-zueoyesj 765 29 cycling cycling NN cord-000248-zueoyesj 765 30 . . . cord-000248-zueoyesj 766 1 The the DT cord-000248-zueoyesj 766 2 occurrence occurrence NN cord-000248-zueoyesj 766 3 of of IN cord-000248-zueoyesj 766 4 misfolded misfolde VBN cord-000248-zueoyesj 766 5 p53 p53 NN cord-000248-zueoyesj 766 6 proteins protein NNS cord-000248-zueoyesj 766 7 can can MD cord-000248-zueoyesj 766 8 lead lead VB cord-000248-zueoyesj 766 9 to to IN cord-000248-zueoyesj 766 10 aggregation aggregation NN cord-000248-zueoyesj 766 11 and and CC cord-000248-zueoyesj 766 12 subsequent subsequent JJ cord-000248-zueoyesj 766 13 ubiquitination ubiquitination NN cord-000248-zueoyesj 766 14 in in IN cord-000248-zueoyesj 766 15 the the DT cord-000248-zueoyesj 766 16 cell cell NN cord-000248-zueoyesj 766 17 , , , cord-000248-zueoyesj 766 18 leading lead VBG cord-000248-zueoyesj 766 19 to to IN cord-000248-zueoyesj 766 20 p53 p53 NN cord-000248-zueoyesj 766 21 inactivation inactivation NN cord-000248-zueoyesj 766 22 [ [ -LRB- cord-000248-zueoyesj 766 23 648 648 CD cord-000248-zueoyesj 766 24 , , , cord-000248-zueoyesj 766 25 649 649 CD cord-000248-zueoyesj 766 26 ] ] -RRB- cord-000248-zueoyesj 766 27 . . . cord-000248-zueoyesj 767 1 If if IN cord-000248-zueoyesj 767 2 a a DT cord-000248-zueoyesj 767 3 key key NN cord-000248-zueoyesj 767 4 ' ' '' cord-000248-zueoyesj 767 5 ' ' '' cord-000248-zueoyesj 767 6 guardian guardian NN cord-000248-zueoyesj 767 7 of of IN cord-000248-zueoyesj 767 8 the the DT cord-000248-zueoyesj 767 9 genome genome NN cord-000248-zueoyesj 767 10 integrity integrity NN cord-000248-zueoyesj 767 11 ' ' '' cord-000248-zueoyesj 767 12 ' ' '' cord-000248-zueoyesj 767 13 [ [ -LRB- cord-000248-zueoyesj 767 14 650 650 CD cord-000248-zueoyesj 767 15 , , , cord-000248-zueoyesj 767 16 651 651 CD cord-000248-zueoyesj 767 17 ] ] -RRB- cord-000248-zueoyesj 767 18 and and CC cord-000248-zueoyesj 767 19 its -PRON- PRP$ cord-000248-zueoyesj 767 20 remarkable remarkable JJ cord-000248-zueoyesj 767 21 conformational conformational JJ cord-000248-zueoyesj 767 22 flexibility flexibility NN cord-000248-zueoyesj 767 23 [ [ -LRB- cord-000248-zueoyesj 767 24 652 652 CD cord-000248-zueoyesj 767 25 ] ] -RRB- cord-000248-zueoyesj 767 26 is be VBZ cord-000248-zueoyesj 767 27 challenged challenge VBN cord-000248-zueoyesj 767 28 by by IN cord-000248-zueoyesj 767 29 an an DT cord-000248-zueoyesj 767 30 increase increase NN cord-000248-zueoyesj 767 31 of of IN cord-000248-zueoyesj 767 32 temperature temperature NN cord-000248-zueoyesj 767 33 [ [ -LRB- cord-000248-zueoyesj 767 34 653 653 CD cord-000248-zueoyesj 767 35 ] ] -RRB- cord-000248-zueoyesj 767 36 , , , cord-000248-zueoyesj 767 37 its -PRON- PRP$ cord-000248-zueoyesj 767 38 role role NN cord-000248-zueoyesj 767 39 in in IN cord-000248-zueoyesj 767 40 genotoxic genotoxic JJ cord-000248-zueoyesj 767 41 damage damage NN cord-000248-zueoyesj 767 42 and and CC cord-000248-zueoyesj 767 43 adaptive adaptive JJ cord-000248-zueoyesj 767 44 response response NN cord-000248-zueoyesj 767 45 ( ( -LRB- cord-000248-zueoyesj 767 46 like like IN cord-000248-zueoyesj 767 47 that that DT cord-000248-zueoyesj 767 48 of of IN cord-000248-zueoyesj 767 49 the the DT cord-000248-zueoyesj 767 50 skin skin NN cord-000248-zueoyesj 767 51 to to IN cord-000248-zueoyesj 767 52 UVB uvb NN cord-000248-zueoyesj 767 53 damage damage NN cord-000248-zueoyesj 767 54 [ [ -LRB- cord-000248-zueoyesj 767 55 654 654 CD cord-000248-zueoyesj 767 56 ] ] -RRB- cord-000248-zueoyesj 767 57 ) ) -RRB- cord-000248-zueoyesj 767 58 may may MD cord-000248-zueoyesj 767 59 be be VB cord-000248-zueoyesj 767 60 impaired impair VBN cord-000248-zueoyesj 767 61 . . . cord-000248-zueoyesj 768 1 The the DT cord-000248-zueoyesj 768 2 same same JJ cord-000248-zueoyesj 768 3 may may MD cord-000248-zueoyesj 768 4 occur occur VB cord-000248-zueoyesj 768 5 for for IN cord-000248-zueoyesj 768 6 other other JJ cord-000248-zueoyesj 768 7 members member NNS cord-000248-zueoyesj 768 8 of of IN cord-000248-zueoyesj 768 9 the the DT cord-000248-zueoyesj 768 10 DNA dna NN cord-000248-zueoyesj 768 11 damage damage NN cord-000248-zueoyesj 768 12 response response NN cord-000248-zueoyesj 768 13 . . . cord-000248-zueoyesj 769 1 An an DT cord-000248-zueoyesj 769 2 increment increment NN cord-000248-zueoyesj 769 3 in in IN cord-000248-zueoyesj 769 4 temperature temperature NN cord-000248-zueoyesj 769 5 has have VBZ cord-000248-zueoyesj 769 6 already already RB cord-000248-zueoyesj 769 7 been be VBN cord-000248-zueoyesj 769 8 linked link VBN cord-000248-zueoyesj 769 9 to to IN cord-000248-zueoyesj 769 10 skin skin NN cord-000248-zueoyesj 769 11 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 769 12 . . . cord-000248-zueoyesj 770 1 Boukamp Boukamp NNP cord-000248-zueoyesj 770 2 et et FW cord-000248-zueoyesj 770 3 al al NNP cord-000248-zueoyesj 770 4 . . . cord-000248-zueoyesj 771 1 report report VB cord-000248-zueoyesj 771 2 in in IN cord-000248-zueoyesj 771 3 that that DT cord-000248-zueoyesj 771 4 [ [ -LRB- cord-000248-zueoyesj 771 5 655 655 NN cord-000248-zueoyesj 771 6 ] ] -RRB- cord-000248-zueoyesj 771 7 ' ' `` cord-000248-zueoyesj 771 8 ' ' '' cord-000248-zueoyesj 771 9 exposure exposure NN cord-000248-zueoyesj 771 10 of of IN cord-000248-zueoyesj 771 11 immortal immortal JJ cord-000248-zueoyesj 771 12 human human JJ cord-000248-zueoyesj 771 13 HaCaT HaCaT NNP cord-000248-zueoyesj 771 14 skin skin NN cord-000248-zueoyesj 771 15 keratinocytes keratinocyte NNS cord-000248-zueoyesj 771 16 ( ( -LRB- cord-000248-zueoyesj 771 17 possessing possess VBG cord-000248-zueoyesj 771 18 UV uv NN cord-000248-zueoyesj 771 19 - - HYPH cord-000248-zueoyesj 771 20 type type NN cord-000248-zueoyesj 771 21 p53 p53 NN cord-000248-zueoyesj 771 22 mutations mutation NNS cord-000248-zueoyesj 771 23 ) ) -RRB- cord-000248-zueoyesj 771 24 to to IN cord-000248-zueoyesj 771 25 40 40 CD cord-000248-zueoyesj 771 26 degrees degree NNS cord-000248-zueoyesj 771 27 C c NN cord-000248-zueoyesj 771 28 reproducibly reproducibly RB cord-000248-zueoyesj 771 29 resulted result VBD cord-000248-zueoyesj 771 30 in in IN cord-000248-zueoyesj 771 31 tumorigenic tumorigenic JJ cord-000248-zueoyesj 771 32 conversion conversion NN cord-000248-zueoyesj 771 33 and and CC cord-000248-zueoyesj 771 34 tumorigenicity tumorigenicity NN cord-000248-zueoyesj 771 35 was be VBD cord-000248-zueoyesj 771 36 stably stably RB cord-000248-zueoyesj 771 37 maintained maintain VBN cord-000248-zueoyesj 771 38 after after IN cord-000248-zueoyesj 771 39 recultivation recultivation NN cord-000248-zueoyesj 771 40 of of IN cord-000248-zueoyesj 771 41 the the DT cord-000248-zueoyesj 771 42 tumors tumor NNS cord-000248-zueoyesj 771 43 . . . cord-000248-zueoyesj 771 44 ' ' '' cord-000248-zueoyesj 771 45 ' ' '' cord-000248-zueoyesj 772 1 On on IN cord-000248-zueoyesj 772 2 the the DT cord-000248-zueoyesj 772 3 other other JJ cord-000248-zueoyesj 772 4 hand hand NN cord-000248-zueoyesj 772 5 , , , cord-000248-zueoyesj 772 6 natural natural JJ cord-000248-zueoyesj 772 7 gradients gradient NNS cord-000248-zueoyesj 772 8 on on IN cord-000248-zueoyesj 772 9 physical physical JJ cord-000248-zueoyesj 772 10 biochemical biochemical JJ cord-000248-zueoyesj 772 11 properties property NNS cord-000248-zueoyesj 772 12 can can MD cord-000248-zueoyesj 772 13 also also RB cord-000248-zueoyesj 772 14 be be VB cord-000248-zueoyesj 772 15 challenged challenge VBN cord-000248-zueoyesj 772 16 in in IN cord-000248-zueoyesj 772 17 a a DT cord-000248-zueoyesj 772 18 cancer cancer NN cord-000248-zueoyesj 772 19 cell cell NN cord-000248-zueoyesj 772 20 . . . cord-000248-zueoyesj 773 1 This this DT cord-000248-zueoyesj 773 2 in in IN cord-000248-zueoyesj 773 3 turn turn NN cord-000248-zueoyesj 773 4 derives derive VBZ cord-000248-zueoyesj 773 5 in in IN cord-000248-zueoyesj 773 6 metabolic metabolic JJ cord-000248-zueoyesj 773 7 processes process NNS cord-000248-zueoyesj 773 8 running run VBG cord-000248-zueoyesj 773 9 under under IN cord-000248-zueoyesj 773 10 abnormal abnormal JJ cord-000248-zueoyesj 773 11 parametric parametric JJ cord-000248-zueoyesj 773 12 circumstances circumstance NNS cord-000248-zueoyesj 773 13 . . . cord-000248-zueoyesj 774 1 It -PRON- PRP cord-000248-zueoyesj 774 2 is be VBZ cord-000248-zueoyesj 774 3 well well RB cord-000248-zueoyesj 774 4 - - HYPH cord-000248-zueoyesj 774 5 known know VBN cord-000248-zueoyesj 774 6 that that DT cord-000248-zueoyesj 774 7 compartimentalization compartimentalization NN cord-000248-zueoyesj 774 8 , , , cord-000248-zueoyesj 774 9 in in IN cord-000248-zueoyesj 774 10 biological biological JJ cord-000248-zueoyesj 774 11 systems system NNS cord-000248-zueoyesj 774 12 , , , cord-000248-zueoyesj 774 13 naturally naturally RB cord-000248-zueoyesj 774 14 require require VBP cord-000248-zueoyesj 774 15 the the DT cord-000248-zueoyesj 774 16 existence existence NN cord-000248-zueoyesj 774 17 of of IN cord-000248-zueoyesj 774 18 mechanisms mechanism NNS cord-000248-zueoyesj 774 19 that that WDT cord-000248-zueoyesj 774 20 would would MD cord-000248-zueoyesj 774 21 keep keep VB cord-000248-zueoyesj 774 22 some some DT cord-000248-zueoyesj 774 23 key key JJ cord-000248-zueoyesj 774 24 state state NN cord-000248-zueoyesj 774 25 variables variable NNS cord-000248-zueoyesj 774 26 relatively relatively RB cord-000248-zueoyesj 774 27 constant constant JJ cord-000248-zueoyesj 774 28 , , , cord-000248-zueoyesj 774 29 or or CC cord-000248-zueoyesj 774 30 within within IN cord-000248-zueoyesj 774 31 bounds bound NNS cord-000248-zueoyesj 774 32 , , , cord-000248-zueoyesj 774 33 for for IN cord-000248-zueoyesj 774 34 normal normal JJ cord-000248-zueoyesj 774 35 operation operation NN cord-000248-zueoyesj 774 36 of of IN cord-000248-zueoyesj 774 37 the the DT cord-000248-zueoyesj 774 38 metabolic metabolic JJ cord-000248-zueoyesj 774 39 processes process NNS cord-000248-zueoyesj 774 40 . . . cord-000248-zueoyesj 775 1 One one CD cord-000248-zueoyesj 775 2 example example NN cord-000248-zueoyesj 775 3 is be VBZ cord-000248-zueoyesj 775 4 very very RB cord-000248-zueoyesj 775 5 illustrative illustrative JJ cord-000248-zueoyesj 775 6 and and CC cord-000248-zueoyesj 775 7 a a DT cord-000248-zueoyesj 775 8 case case NN cord-000248-zueoyesj 775 9 in in IN cord-000248-zueoyesj 775 10 point point NN cord-000248-zueoyesj 775 11 . . . cord-000248-zueoyesj 776 1 Instead instead RB cord-000248-zueoyesj 776 2 of of IN cord-000248-zueoyesj 776 3 demons demon NNS cord-000248-zueoyesj 776 4 , , , cord-000248-zueoyesj 776 5 holes hole NNS cord-000248-zueoyesj 776 6 , , , cord-000248-zueoyesj 776 7 or or CC cord-000248-zueoyesj 776 8 valves valve NNS cord-000248-zueoyesj 776 9 , , , cord-000248-zueoyesj 776 10 the the DT cord-000248-zueoyesj 776 11 cell cell NN cord-000248-zueoyesj 776 12 requires require VBZ cord-000248-zueoyesj 776 13 pores pore NNS cord-000248-zueoyesj 776 14 in in IN cord-000248-zueoyesj 776 15 its -PRON- PRP$ cord-000248-zueoyesj 776 16 membranes membrane NNS cord-000248-zueoyesj 776 17 to to TO cord-000248-zueoyesj 776 18 allow allow VB cord-000248-zueoyesj 776 19 osmotic osmotic JJ cord-000248-zueoyesj 776 20 regulatory regulatory JJ cord-000248-zueoyesj 776 21 processes process NNS cord-000248-zueoyesj 776 22 , , , cord-000248-zueoyesj 776 23 yet yet CC cord-000248-zueoyesj 776 24 it -PRON- PRP cord-000248-zueoyesj 776 25 should should MD cord-000248-zueoyesj 776 26 preclude preclude VB cord-000248-zueoyesj 776 27 the the DT cord-000248-zueoyesj 776 28 conduction conduction NN cord-000248-zueoyesj 776 29 of of IN cord-000248-zueoyesj 776 30 protons proton NNS cord-000248-zueoyesj 776 31 . . . cord-000248-zueoyesj 777 1 This this DT cord-000248-zueoyesj 777 2 is be VBZ cord-000248-zueoyesj 777 3 a a DT cord-000248-zueoyesj 777 4 nanotechnological nanotechnological JJ cord-000248-zueoyesj 777 5 design design NN cord-000248-zueoyesj 777 6 problem problem NN cord-000248-zueoyesj 777 7 not not RB cord-000248-zueoyesj 777 8 faced face VBN cord-000248-zueoyesj 777 9 by by IN cord-000248-zueoyesj 777 10 Maxwell Maxwell NNP cord-000248-zueoyesj 777 11 , , , cord-000248-zueoyesj 777 12 but but CC cord-000248-zueoyesj 777 13 certainly certainly RB cord-000248-zueoyesj 777 14 solved solve VBN cord-000248-zueoyesj 777 15 by by IN cord-000248-zueoyesj 777 16 biological biological JJ cord-000248-zueoyesj 777 17 systems system NNS cord-000248-zueoyesj 777 18 without without IN cord-000248-zueoyesj 777 19 the the DT cord-000248-zueoyesj 777 20 need need NN cord-000248-zueoyesj 777 21 of of IN cord-000248-zueoyesj 777 22 an an DT cord-000248-zueoyesj 777 23 ' ' '' cord-000248-zueoyesj 777 24 ' ' `` cord-000248-zueoyesj 777 25 intelligent intelligent JJ cord-000248-zueoyesj 777 26 being being NN cord-000248-zueoyesj 777 27 ' ' '' cord-000248-zueoyesj 777 28 ' ' '' cord-000248-zueoyesj 777 29 as as IN cord-000248-zueoyesj 777 30 Mawell Mawell NNP cord-000248-zueoyesj 777 31 cleverly cleverly RB cord-000248-zueoyesj 777 32 pointed point VBD cord-000248-zueoyesj 777 33 to to IN cord-000248-zueoyesj 777 34 Tait Tait NNP cord-000248-zueoyesj 777 35 in in IN cord-000248-zueoyesj 777 36 his -PRON- PRP$ cord-000248-zueoyesj 777 37 letter letter NN cord-000248-zueoyesj 777 38 . . . cord-000248-zueoyesj 778 1 This this DT cord-000248-zueoyesj 778 2 discussion discussion NN cord-000248-zueoyesj 778 3 brings bring VBZ cord-000248-zueoyesj 778 4 us -PRON- PRP cord-000248-zueoyesj 778 5 to to IN cord-000248-zueoyesj 778 6 one one CD cord-000248-zueoyesj 778 7 of of IN cord-000248-zueoyesj 778 8 the the DT cord-000248-zueoyesj 778 9 gene gene NN cord-000248-zueoyesj 778 10 families family NNS cord-000248-zueoyesj 778 11 we -PRON- PRP cord-000248-zueoyesj 778 12 have have VBP cord-000248-zueoyesj 778 13 already already RB cord-000248-zueoyesj 778 14 discussed discuss VBN cord-000248-zueoyesj 778 15 in in IN cord-000248-zueoyesj 778 16 this this DT cord-000248-zueoyesj 778 17 paper paper NN cord-000248-zueoyesj 778 18 , , , cord-000248-zueoyesj 778 19 the the DT cord-000248-zueoyesj 778 20 aquaporins aquaporin NNS cord-000248-zueoyesj 778 21 [ [ -LRB- cord-000248-zueoyesj 778 22 184 184 CD cord-000248-zueoyesj 778 23 , , , cord-000248-zueoyesj 778 24 656 656 CD cord-000248-zueoyesj 778 25 , , , cord-000248-zueoyesj 778 26 657 657 CD cord-000248-zueoyesj 778 27 , , , cord-000248-zueoyesj 778 28 658 658 CD cord-000248-zueoyesj 778 29 , , , cord-000248-zueoyesj 778 30 659 659 CD cord-000248-zueoyesj 778 31 , , , cord-000248-zueoyesj 778 32 660 660 CD cord-000248-zueoyesj 778 33 , , , cord-000248-zueoyesj 778 34 661 661 CD cord-000248-zueoyesj 778 35 ] ] -RRB- cord-000248-zueoyesj 778 36 . . . cord-000248-zueoyesj 779 1 They -PRON- PRP cord-000248-zueoyesj 779 2 are be VBP cord-000248-zueoyesj 779 3 considered consider VBN cord-000248-zueoyesj 779 4 the the DT cord-000248-zueoyesj 779 5 primary primary JJ cord-000248-zueoyesj 779 6 water water NN cord-000248-zueoyesj 779 7 channels channel NNS cord-000248-zueoyesj 779 8 of of IN cord-000248-zueoyesj 779 9 cell cell NN cord-000248-zueoyesj 779 10 membranes membrane NNS cord-000248-zueoyesj 779 11 [ [ -LRB- cord-000248-zueoyesj 779 12 662 662 CD cord-000248-zueoyesj 779 13 , , , cord-000248-zueoyesj 779 14 663 663 CD cord-000248-zueoyesj 779 15 , , , cord-000248-zueoyesj 779 16 664 664 CD cord-000248-zueoyesj 779 17 , , , cord-000248-zueoyesj 779 18 665 665 CD cord-000248-zueoyesj 779 19 ] ] -RRB- cord-000248-zueoyesj 779 20 . . . cord-000248-zueoyesj 780 1 The the DT cord-000248-zueoyesj 780 2 specific specific JJ cord-000248-zueoyesj 780 3 functions function NNS cord-000248-zueoyesj 780 4 of of IN cord-000248-zueoyesj 780 5 each each DT cord-000248-zueoyesj 780 6 member member NN cord-000248-zueoyesj 780 7 of of IN cord-000248-zueoyesj 780 8 this this DT cord-000248-zueoyesj 780 9 family family NN cord-000248-zueoyesj 780 10 are be VBP cord-000248-zueoyesj 780 11 now now RB cord-000248-zueoyesj 780 12 being be VBG cord-000248-zueoyesj 780 13 slowly slowly RB cord-000248-zueoyesj 780 14 mapped map VBN cord-000248-zueoyesj 780 15 by by IN cord-000248-zueoyesj 780 16 several several JJ cord-000248-zueoyesj 780 17 research research NN cord-000248-zueoyesj 780 18 labs lab NNS cord-000248-zueoyesj 780 19 around around IN cord-000248-zueoyesj 780 20 the the DT cord-000248-zueoyesj 780 21 world world NN cord-000248-zueoyesj 780 22 [ [ -LRB- cord-000248-zueoyesj 780 23 666 666 CD cord-000248-zueoyesj 780 24 ] ] -RRB- cord-000248-zueoyesj 780 25 . . . cord-000248-zueoyesj 781 1 Their -PRON- PRP$ cord-000248-zueoyesj 781 2 clinical clinical JJ cord-000248-zueoyesj 781 3 role role NN cord-000248-zueoyesj 781 4 in in IN cord-000248-zueoyesj 781 5 cancer cancer NN cord-000248-zueoyesj 781 6 [ [ -LRB- cord-000248-zueoyesj 781 7 667 667 CD cord-000248-zueoyesj 781 8 , , , cord-000248-zueoyesj 781 9 668 668 CD cord-000248-zueoyesj 781 10 , , , cord-000248-zueoyesj 781 11 669 669 CD cord-000248-zueoyesj 781 12 , , , cord-000248-zueoyesj 781 13 670 670 CD cord-000248-zueoyesj 781 14 , , , cord-000248-zueoyesj 781 15 671 671 CD cord-000248-zueoyesj 781 16 , , , cord-000248-zueoyesj 781 17 672 672 CD cord-000248-zueoyesj 781 18 , , , cord-000248-zueoyesj 781 19 673 673 CD cord-000248-zueoyesj 781 20 , , , cord-000248-zueoyesj 781 21 674 674 CD cord-000248-zueoyesj 781 22 , , , cord-000248-zueoyesj 781 23 675 675 CD cord-000248-zueoyesj 781 24 ] ] -RRB- cord-000248-zueoyesj 781 25 , , , cord-000248-zueoyesj 781 26 obesity obesity NN cord-000248-zueoyesj 781 27 [ [ -LRB- cord-000248-zueoyesj 781 28 676 676 CD cord-000248-zueoyesj 781 29 ] ] -RRB- cord-000248-zueoyesj 781 30 , , , cord-000248-zueoyesj 781 31 malaria malaria FW cord-000248-zueoyesj 781 32 [ [ -LRB- cord-000248-zueoyesj 781 33 677 677 CD cord-000248-zueoyesj 781 34 , , , cord-000248-zueoyesj 781 35 678 678 CD cord-000248-zueoyesj 781 36 ] ] -RRB- cord-000248-zueoyesj 781 37 and and CC cord-000248-zueoyesj 781 38 other other JJ cord-000248-zueoyesj 781 39 diseases disease NNS cord-000248-zueoyesj 781 40 is be VBZ cord-000248-zueoyesj 781 41 emerging emerge VBG cord-000248-zueoyesj 781 42 [ [ -LRB- cord-000248-zueoyesj 781 43 657 657 CD cord-000248-zueoyesj 781 44 , , , cord-000248-zueoyesj 781 45 679 679 CD cord-000248-zueoyesj 781 46 , , , cord-000248-zueoyesj 781 47 680 680 CD cord-000248-zueoyesj 781 48 , , , cord-000248-zueoyesj 781 49 681 681 CD cord-000248-zueoyesj 781 50 , , , cord-000248-zueoyesj 781 51 682 682 CD cord-000248-zueoyesj 781 52 , , , cord-000248-zueoyesj 781 53 683 683 CD cord-000248-zueoyesj 781 54 , , , cord-000248-zueoyesj 781 55 684 684 CD cord-000248-zueoyesj 781 56 , , , cord-000248-zueoyesj 781 57 685 685 CD cord-000248-zueoyesj 781 58 , , , cord-000248-zueoyesj 781 59 686 686 CD cord-000248-zueoyesj 781 60 , , , cord-000248-zueoyesj 781 61 687 687 CD cord-000248-zueoyesj 781 62 , , , cord-000248-zueoyesj 781 63 688 688 CD cord-000248-zueoyesj 781 64 , , , cord-000248-zueoyesj 781 65 689 689 CD cord-000248-zueoyesj 781 66 ] ] -RRB- cord-000248-zueoyesj 781 67 . . . cord-000248-zueoyesj 782 1 In in IN cord-000248-zueoyesj 782 2 [ [ -LRB- cord-000248-zueoyesj 782 3 690 690 CD cord-000248-zueoyesj 782 4 ] ] -RRB- cord-000248-zueoyesj 782 5 , , , cord-000248-zueoyesj 782 6 our -PRON- PRP$ cord-000248-zueoyesj 782 7 group group NN cord-000248-zueoyesj 782 8 observed observe VBD cord-000248-zueoyesj 782 9 the the DT cord-000248-zueoyesj 782 10 dowregulation dowregulation NN cord-000248-zueoyesj 782 11 of of IN cord-000248-zueoyesj 782 12 AQP3 AQP3 NNP cord-000248-zueoyesj 782 13 in in IN cord-000248-zueoyesj 782 14 all all DT cord-000248-zueoyesj 782 15 melanoma melanoma NN cord-000248-zueoyesj 782 16 cell cell NN cord-000248-zueoyesj 782 17 lines line NNS cord-000248-zueoyesj 782 18 studied study VBN cord-000248-zueoyesj 782 19 of of IN cord-000248-zueoyesj 782 20 the the DT cord-000248-zueoyesj 782 21 NCI-60 NCI-60 NNP cord-000248-zueoyesj 782 22 dataset dataset NN cord-000248-zueoyesj 782 23 of of IN cord-000248-zueoyesj 782 24 Ross Ross NNP cord-000248-zueoyesj 782 25 et et NNP cord-000248-zueoyesj 782 26 al al NNP cord-000248-zueoyesj 782 27 . . NNP cord-000248-zueoyesj 782 28 ; ; : cord-000248-zueoyesj 782 29 this this DT cord-000248-zueoyesj 782 30 dowregulation dowregulation NN cord-000248-zueoyesj 782 31 was be VBD cord-000248-zueoyesj 782 32 also also RB cord-000248-zueoyesj 782 33 observed observe VBN cord-000248-zueoyesj 782 34 for for IN cord-000248-zueoyesj 782 35 the the DT cord-000248-zueoyesj 782 36 CNS CNS NNP cord-000248-zueoyesj 782 37 and and CC cord-000248-zueoyesj 782 38 Renal renal JJ cord-000248-zueoyesj 782 39 cell cell NN cord-000248-zueoyesj 782 40 lines line NNS cord-000248-zueoyesj 782 41 . . . cord-000248-zueoyesj 783 1 AQP3 AQP3 NNP cord-000248-zueoyesj 783 2 was be VBD cord-000248-zueoyesj 783 3 relatively relatively RB cord-000248-zueoyesj 783 4 upregulated upregulate VBN cord-000248-zueoyesj 783 5 for for IN cord-000248-zueoyesj 783 6 Leukaemia Leukaemia NNP cord-000248-zueoyesj 783 7 and and CC cord-000248-zueoyesj 783 8 Colon colon NN cord-000248-zueoyesj 783 9 cell cell NN cord-000248-zueoyesj 783 10 - - HYPH cord-000248-zueoyesj 783 11 lines line NNS cord-000248-zueoyesj 783 12 ( ( -LRB- cord-000248-zueoyesj 783 13 we -PRON- PRP cord-000248-zueoyesj 783 14 refer refer VBP cord-000248-zueoyesj 783 15 the the DT cord-000248-zueoyesj 783 16 reader reader NN cord-000248-zueoyesj 783 17 to to IN cord-000248-zueoyesj 783 18 the the DT cord-000248-zueoyesj 783 19 Supplementary Supplementary NNP cord-000248-zueoyesj 783 20 Material Material NNP cord-000248-zueoyesj 783 21 of of IN cord-000248-zueoyesj 783 22 [ [ -LRB- cord-000248-zueoyesj 783 23 690 690 CD cord-000248-zueoyesj 783 24 ] ] -RRB- cord-000248-zueoyesj 783 25 for for IN cord-000248-zueoyesj 783 26 details detail NNS cord-000248-zueoyesj 783 27 ) ) -RRB- cord-000248-zueoyesj 783 28 . . . cord-000248-zueoyesj 784 1 Inhibition inhibition NN cord-000248-zueoyesj 784 2 of of IN cord-000248-zueoyesj 784 3 AQP3 AQP3 NNP cord-000248-zueoyesj 784 4 in in IN cord-000248-zueoyesj 784 5 prostate prostate NN cord-000248-zueoyesj 784 6 cancer cancer NN cord-000248-zueoyesj 784 7 cells cell NNS cord-000248-zueoyesj 784 8 was be VBD cord-000248-zueoyesj 784 9 already already RB cord-000248-zueoyesj 784 10 proposed propose VBN cord-000248-zueoyesj 784 11 as as IN cord-000248-zueoyesj 784 12 a a DT cord-000248-zueoyesj 784 13 mechanism mechanism NN cord-000248-zueoyesj 784 14 that that WDT cord-000248-zueoyesj 784 15 increases increase VBZ cord-000248-zueoyesj 784 16 the the DT cord-000248-zueoyesj 784 17 sensitivity sensitivity NN cord-000248-zueoyesj 784 18 to to IN cord-000248-zueoyesj 784 19 cryotherapy cryotherapy NN cord-000248-zueoyesj 784 20 treatment treatment NN cord-000248-zueoyesj 784 21 [ [ -LRB- cord-000248-zueoyesj 784 22 691 691 CD cord-000248-zueoyesj 784 23 ] ] -RRB- cord-000248-zueoyesj 784 24 . . . cord-000248-zueoyesj 785 1 The the DT cord-000248-zueoyesj 785 2 aquaporins aquaporin NNS cord-000248-zueoyesj 785 3 are be VBP cord-000248-zueoyesj 785 4 not not RB cord-000248-zueoyesj 785 5 ' ' `` cord-000248-zueoyesj 785 6 ' ' '' cord-000248-zueoyesj 785 7 an an DT cord-000248-zueoyesj 785 8 intelligent intelligent JJ cord-000248-zueoyesj 785 9 being being NN cord-000248-zueoyesj 785 10 ' ' '' cord-000248-zueoyesj 785 11 ' ' '' cord-000248-zueoyesj 785 12 in in IN cord-000248-zueoyesj 785 13 any any DT cord-000248-zueoyesj 785 14 real real JJ cord-000248-zueoyesj 785 15 sense sense NN cord-000248-zueoyesj 785 16 , , , cord-000248-zueoyesj 785 17 yet yet CC cord-000248-zueoyesj 785 18 they -PRON- PRP cord-000248-zueoyesj 785 19 are be VBP cord-000248-zueoyesj 785 20 so so RB cord-000248-zueoyesj 785 21 formidable formidable JJ cord-000248-zueoyesj 785 22 selective selective JJ cord-000248-zueoyesj 785 23 that that IN cord-000248-zueoyesj 785 24 they -PRON- PRP cord-000248-zueoyesj 785 25 could could MD cord-000248-zueoyesj 785 26 easily easily RB cord-000248-zueoyesj 785 27 parallel parallel VB cord-000248-zueoyesj 785 28 Maxwell Maxwell NNP cord-000248-zueoyesj 785 29 demon demon NN cord-000248-zueoyesj 785 30 's 's POS cord-000248-zueoyesj 785 31 efficiency efficiency NN cord-000248-zueoyesj 785 32 in in IN cord-000248-zueoyesj 785 33 creating create VBG cord-000248-zueoyesj 785 34 the the DT cord-000248-zueoyesj 785 35 right right JJ cord-000248-zueoyesj 785 36 conditions condition NNS cord-000248-zueoyesj 785 37 for for IN cord-000248-zueoyesj 785 38 the the DT cord-000248-zueoyesj 785 39 cell cell NN cord-000248-zueoyesj 785 40 . . . cord-000248-zueoyesj 786 1 Wu Wu NNP cord-000248-zueoyesj 786 2 et et NNP cord-000248-zueoyesj 786 3 al al NNP cord-000248-zueoyesj 786 4 . . . cord-000248-zueoyesj 787 1 give give VB cord-000248-zueoyesj 787 2 us -PRON- PRP cord-000248-zueoyesj 787 3 some some DT cord-000248-zueoyesj 787 4 clues clue NNS cord-000248-zueoyesj 787 5 on on IN cord-000248-zueoyesj 787 6 the the DT cord-000248-zueoyesj 787 7 role role NN cord-000248-zueoyesj 787 8 of of IN cord-000248-zueoyesj 787 9 point point NN cord-000248-zueoyesj 787 10 mutations mutation NNS cord-000248-zueoyesj 787 11 in in IN cord-000248-zueoyesj 787 12 the the DT cord-000248-zueoyesj 787 13 AQP1 AQP1 NNP cord-000248-zueoyesj 787 14 and and CC cord-000248-zueoyesj 787 15 how how WRB cord-000248-zueoyesj 787 16 their -PRON- PRP$ cord-000248-zueoyesj 787 17 effective effective JJ cord-000248-zueoyesj 787 18 electrostatic electrostatic JJ cord-000248-zueoyesj 787 19 proton proton NN cord-000248-zueoyesj 787 20 barrier barrier NN cord-000248-zueoyesj 787 21 can can MD cord-000248-zueoyesj 787 22 be be VB cord-000248-zueoyesj 787 23 impaired impair VBN cord-000248-zueoyesj 787 24 [ [ -LRB- cord-000248-zueoyesj 787 25 692 692 CD cord-000248-zueoyesj 787 26 ] ] -RRB- cord-000248-zueoyesj 787 27 . . . cord-000248-zueoyesj 788 1 The the DT cord-000248-zueoyesj 788 2 elicitation elicitation NN cord-000248-zueoyesj 788 3 of of IN cord-000248-zueoyesj 788 4 the the DT cord-000248-zueoyesj 788 5 detailed detailed JJ cord-000248-zueoyesj 788 6 mechanistic mechanistic JJ cord-000248-zueoyesj 788 7 explanation explanation NN cord-000248-zueoyesj 788 8 of of IN cord-000248-zueoyesj 788 9 this this DT cord-000248-zueoyesj 788 10 extraordinary extraordinary JJ cord-000248-zueoyesj 788 11 selectivity selectivity NN cord-000248-zueoyesj 788 12 is be VBZ cord-000248-zueoyesj 788 13 under under IN cord-000248-zueoyesj 788 14 intense intense JJ cord-000248-zueoyesj 788 15 investigation investigation NN cord-000248-zueoyesj 788 16 with with IN cord-000248-zueoyesj 788 17 a a DT cord-000248-zueoyesj 788 18 number number NN cord-000248-zueoyesj 788 19 of of IN cord-000248-zueoyesj 788 20 techniques technique NNS cord-000248-zueoyesj 788 21 , , , cord-000248-zueoyesj 788 22 including include VBG cord-000248-zueoyesj 788 23 sophisticated sophisticated JJ cord-000248-zueoyesj 788 24 molecular molecular JJ cord-000248-zueoyesj 788 25 dyanamics dyanamic NNS cord-000248-zueoyesj 788 26 simulations simulation NNS cord-000248-zueoyesj 788 27 , , , cord-000248-zueoyesj 788 28 for for IN cord-000248-zueoyesj 788 29 an an DT cord-000248-zueoyesj 788 30 overview overview NN cord-000248-zueoyesj 788 31 of of IN cord-000248-zueoyesj 788 32 this this DT cord-000248-zueoyesj 788 33 field field NN cord-000248-zueoyesj 788 34 see see VBP cord-000248-zueoyesj 788 35 [ [ -LRB- cord-000248-zueoyesj 788 36 665 665 CD cord-000248-zueoyesj 788 37 , , , cord-000248-zueoyesj 788 38 693 693 CD cord-000248-zueoyesj 788 39 , , , cord-000248-zueoyesj 788 40 694 694 CD cord-000248-zueoyesj 788 41 , , , cord-000248-zueoyesj 788 42 695 695 CD cord-000248-zueoyesj 788 43 , , , cord-000248-zueoyesj 788 44 696 696 CD cord-000248-zueoyesj 788 45 , , , cord-000248-zueoyesj 788 46 697 697 CD cord-000248-zueoyesj 788 47 , , , cord-000248-zueoyesj 788 48 698 698 CD cord-000248-zueoyesj 788 49 , , , cord-000248-zueoyesj 788 50 699 699 CD cord-000248-zueoyesj 788 51 , , , cord-000248-zueoyesj 788 52 700 700 CD cord-000248-zueoyesj 788 53 , , , cord-000248-zueoyesj 788 54 701 701 CD cord-000248-zueoyesj 788 55 , , , cord-000248-zueoyesj 788 56 702 702 CD cord-000248-zueoyesj 788 57 , , , cord-000248-zueoyesj 788 58 703 703 CD cord-000248-zueoyesj 788 59 , , , cord-000248-zueoyesj 788 60 704 704 CD cord-000248-zueoyesj 788 61 , , , cord-000248-zueoyesj 788 62 705 705 CD cord-000248-zueoyesj 788 63 , , , cord-000248-zueoyesj 788 64 706 706 CD cord-000248-zueoyesj 788 65 , , , cord-000248-zueoyesj 788 66 707 707 CD cord-000248-zueoyesj 788 67 , , , cord-000248-zueoyesj 788 68 708 708 CD cord-000248-zueoyesj 788 69 ] ] -RRB- cord-000248-zueoyesj 788 70 . . . cord-000248-zueoyesj 789 1 One one CD cord-000248-zueoyesj 789 2 less less RBR cord-000248-zueoyesj 789 3 known know VBN cord-000248-zueoyesj 789 4 feature feature NN cord-000248-zueoyesj 789 5 of of IN cord-000248-zueoyesj 789 6 aquaporins aquaporin NNS cord-000248-zueoyesj 789 7 is be VBZ cord-000248-zueoyesj 789 8 that that IN cord-000248-zueoyesj 789 9 they -PRON- PRP cord-000248-zueoyesj 789 10 may may MD cord-000248-zueoyesj 789 11 not not RB cord-000248-zueoyesj 789 12 only only RB cord-000248-zueoyesj 789 13 channel channel NN cord-000248-zueoyesj 789 14 water water NN cord-000248-zueoyesj 789 15 , , , cord-000248-zueoyesj 789 16 but but CC cord-000248-zueoyesj 789 17 also also RB cord-000248-zueoyesj 789 18 carbon carbon VBP cord-000248-zueoyesj 789 19 dioxide dioxide NN cord-000248-zueoyesj 789 20 and and CC cord-000248-zueoyesj 789 21 ammonia ammonia NN cord-000248-zueoyesj 789 22 [ [ -LRB- cord-000248-zueoyesj 789 23 709 709 CD cord-000248-zueoyesj 789 24 , , , cord-000248-zueoyesj 789 25 710 710 CD cord-000248-zueoyesj 789 26 , , , cord-000248-zueoyesj 789 27 711 711 CD cord-000248-zueoyesj 789 28 ] ] -RRB- cord-000248-zueoyesj 789 29 , , , cord-000248-zueoyesj 789 30 glycerol glycerol NN cord-000248-zueoyesj 789 31 [ [ -LRB- cord-000248-zueoyesj 789 32 712 712 CD cord-000248-zueoyesj 789 33 ] ] -RRB- cord-000248-zueoyesj 789 34 and and CC cord-000248-zueoyesj 789 35 urea urea NN cord-000248-zueoyesj 789 36 and and CC cord-000248-zueoyesj 789 37 other other JJ cord-000248-zueoyesj 789 38 small small JJ cord-000248-zueoyesj 789 39 solutes solute NNS cord-000248-zueoyesj 789 40 [ [ -LRB- cord-000248-zueoyesj 789 41 713 713 CD cord-000248-zueoyesj 789 42 ] ] -RRB- cord-000248-zueoyesj 790 1 and and CC cord-000248-zueoyesj 790 2 , , , cord-000248-zueoyesj 790 3 very very RB cord-000248-zueoyesj 790 4 relevant relevant JJ cord-000248-zueoyesj 790 5 for for IN cord-000248-zueoyesj 790 6 cancer cancer NN cord-000248-zueoyesj 790 7 research research NN cord-000248-zueoyesj 790 8 , , , cord-000248-zueoyesj 790 9 hydrogen hydrogen NN cord-000248-zueoyesj 790 10 peroxide peroxide NN cord-000248-zueoyesj 790 11 [ [ -LRB- cord-000248-zueoyesj 790 12 188 188 CD cord-000248-zueoyesj 790 13 ] ] -RRB- cord-000248-zueoyesj 790 14 . . . cord-000248-zueoyesj 791 1 At at RB cord-000248-zueoyesj 791 2 least least RBS cord-000248-zueoyesj 791 3 two two CD cord-000248-zueoyesj 791 4 of of IN cord-000248-zueoyesj 791 5 members member NNS cord-000248-zueoyesj 791 6 of of IN cord-000248-zueoyesj 791 7 this this DT cord-000248-zueoyesj 791 8 family family NN cord-000248-zueoyesj 791 9 have have VBP cord-000248-zueoyesj 791 10 been be VBN cord-000248-zueoyesj 791 11 observed observe VBN cord-000248-zueoyesj 791 12 in in IN cord-000248-zueoyesj 791 13 the the DT cord-000248-zueoyesj 791 14 inner inner JJ cord-000248-zueoyesj 791 15 mitochondrial mitochondrial NN cord-000248-zueoyesj 791 16 membrane membrane NN cord-000248-zueoyesj 791 17 in in IN cord-000248-zueoyesj 791 18 different different JJ cord-000248-zueoyesj 791 19 tissues tissue NNS cord-000248-zueoyesj 791 20 . . . cord-000248-zueoyesj 792 1 This this DT cord-000248-zueoyesj 792 2 in in IN cord-000248-zueoyesj 792 3 turn turn NN cord-000248-zueoyesj 792 4 may may MD cord-000248-zueoyesj 792 5 indicate indicate VB cord-000248-zueoyesj 792 6 mitochondrial mitochondrial JJ cord-000248-zueoyesj 792 7 roles role NNS cord-000248-zueoyesj 792 8 for for IN cord-000248-zueoyesj 792 9 aquapotins aquapotin NNS cord-000248-zueoyesj 792 10 in in IN cord-000248-zueoyesj 792 11 osmotic osmotic JJ cord-000248-zueoyesj 792 12 swelling swelling NN cord-000248-zueoyesj 792 13 induced induce VBN cord-000248-zueoyesj 792 14 by by IN cord-000248-zueoyesj 792 15 apoptotic apoptotic JJ cord-000248-zueoyesj 792 16 stimuli stimulus NNS cord-000248-zueoyesj 792 17 [ [ -LRB- cord-000248-zueoyesj 792 18 714 714 CD cord-000248-zueoyesj 792 19 ] ] -RRB- cord-000248-zueoyesj 792 20 . . . cord-000248-zueoyesj 793 1 Could Could MD cord-000248-zueoyesj 793 2 it -PRON- PRP cord-000248-zueoyesj 793 3 be be VB cord-000248-zueoyesj 793 4 possible possible JJ cord-000248-zueoyesj 793 5 that that IN cord-000248-zueoyesj 793 6 we -PRON- PRP cord-000248-zueoyesj 793 7 can can MD cord-000248-zueoyesj 793 8 track track VB cord-000248-zueoyesj 793 9 cancer cancer NN cord-000248-zueoyesj 793 10 progression progression NN cord-000248-zueoyesj 793 11 by by IN cord-000248-zueoyesj 793 12 looking look VBG cord-000248-zueoyesj 793 13 at at IN cord-000248-zueoyesj 793 14 some some DT cord-000248-zueoyesj 793 15 of of IN cord-000248-zueoyesj 793 16 these these DT cord-000248-zueoyesj 793 17 ' ' '' cord-000248-zueoyesj 793 18 ' ' '' cord-000248-zueoyesj 793 19 Maxwell Maxwell NNP cord-000248-zueoyesj 793 20 demons demon NNS cord-000248-zueoyesj 793 21 ' ' '' cord-000248-zueoyesj 793 22 ' ' '' cord-000248-zueoyesj 793 23 ? ? . cord-000248-zueoyesj 794 1 We -PRON- PRP cord-000248-zueoyesj 794 2 have have VBP cord-000248-zueoyesj 794 3 seen see VBN cord-000248-zueoyesj 794 4 in in IN cord-000248-zueoyesj 794 5 Figure Figure NNP cord-000248-zueoyesj 794 6 10 10 CD cord-000248-zueoyesj 794 7 , , , cord-000248-zueoyesj 794 8 that that IN cord-000248-zueoyesj 794 9 AQP3 AQP3 NNP cord-000248-zueoyesj 794 10 has have VBZ cord-000248-zueoyesj 794 11 a a DT cord-000248-zueoyesj 794 12 reduced reduce VBN cord-000248-zueoyesj 794 13 expression expression NN cord-000248-zueoyesj 794 14 with with IN cord-000248-zueoyesj 794 15 increased increase VBN cord-000248-zueoyesj 794 16 progression progression NN cord-000248-zueoyesj 794 17 in in IN cord-000248-zueoyesj 794 18 our -PRON- PRP$ cord-000248-zueoyesj 794 19 melanoma melanoma NN cord-000248-zueoyesj 794 20 dataset dataset NN cord-000248-zueoyesj 794 21 . . . cord-000248-zueoyesj 795 1 Cao Cao NNP cord-000248-zueoyesj 795 2 et et NNP cord-000248-zueoyesj 795 3 al al NNP cord-000248-zueoyesj 795 4 . . NNP cord-000248-zueoyesj 795 5 , , , cord-000248-zueoyesj 795 6 reported report VBD cord-000248-zueoyesj 795 7 that that IN cord-000248-zueoyesj 795 8 ultraviolet ultraviolet NN cord-000248-zueoyesj 795 9 radiation radiation NN cord-000248-zueoyesj 795 10 induced induce VBN cord-000248-zueoyesj 795 11 AQP3 AQP3 NNP cord-000248-zueoyesj 795 12 down down IN cord-000248-zueoyesj 795 13 - - HYPH cord-000248-zueoyesj 795 14 regulation regulation NN cord-000248-zueoyesj 795 15 in in IN cord-000248-zueoyesj 795 16 human human JJ cord-000248-zueoyesj 795 17 karatinocytes karatinocyte NNS cord-000248-zueoyesj 795 18 ; ; : cord-000248-zueoyesj 795 19 thus thus RB cord-000248-zueoyesj 795 20 AQP3 AQP3 NNP cord-000248-zueoyesj 795 21 has have VBZ cord-000248-zueoyesj 795 22 become become VBN cord-000248-zueoyesj 795 23 a a DT cord-000248-zueoyesj 795 24 strong strong JJ cord-000248-zueoyesj 795 25 and and CC cord-000248-zueoyesj 795 26 plausible plausible JJ cord-000248-zueoyesj 795 27 link link NN cord-000248-zueoyesj 795 28 between between IN cord-000248-zueoyesj 795 29 UV uv NN cord-000248-zueoyesj 795 30 radiation radiation NN cord-000248-zueoyesj 795 31 , , , cord-000248-zueoyesj 795 32 skin skin NN cord-000248-zueoyesj 795 33 dehydration dehydration NN cord-000248-zueoyesj 795 34 [ [ -LRB- cord-000248-zueoyesj 795 35 186 186 CD cord-000248-zueoyesj 795 36 , , , cord-000248-zueoyesj 795 37 715 715 CD cord-000248-zueoyesj 795 38 ] ] -RRB- cord-000248-zueoyesj 795 39 and and CC cord-000248-zueoyesj 795 40 photoaging photoage VBG cord-000248-zueoyesj 795 41 [ [ -LRB- cord-000248-zueoyesj 795 42 189 189 CD cord-000248-zueoyesj 795 43 ] ] -RRB- cord-000248-zueoyesj 795 44 . . . cord-000248-zueoyesj 796 1 This this DT cord-000248-zueoyesj 796 2 may may MD cord-000248-zueoyesj 796 3 indicate indicate VB cord-000248-zueoyesj 796 4 an an DT cord-000248-zueoyesj 796 5 impared impared JJ cord-000248-zueoyesj 796 6 function function NN cord-000248-zueoyesj 796 7 on on IN cord-000248-zueoyesj 796 8 skin skin NN cord-000248-zueoyesj 796 9 hydration hydration NN cord-000248-zueoyesj 796 10 [ [ -LRB- cord-000248-zueoyesj 796 11 184 184 CD cord-000248-zueoyesj 796 12 , , , cord-000248-zueoyesj 796 13 185 185 CD cord-000248-zueoyesj 796 14 , , , cord-000248-zueoyesj 796 15 716 716 CD cord-000248-zueoyesj 796 16 , , , cord-000248-zueoyesj 796 17 717 717 CD cord-000248-zueoyesj 796 18 , , , cord-000248-zueoyesj 796 19 718 718 CD cord-000248-zueoyesj 796 20 , , , cord-000248-zueoyesj 796 21 719 719 CD cord-000248-zueoyesj 796 22 ] ] -RRB- cord-000248-zueoyesj 796 23 . . . cord-000248-zueoyesj 797 1 The the DT cord-000248-zueoyesj 797 2 expression expression NN cord-000248-zueoyesj 797 3 of of IN cord-000248-zueoyesj 797 4 AQP3 AQP3 NNP cord-000248-zueoyesj 797 5 , , , cord-000248-zueoyesj 797 6 as as RB cord-000248-zueoyesj 797 7 well well RB cord-000248-zueoyesj 797 8 as as IN cord-000248-zueoyesj 797 9 AQP1 AQP1 NNP cord-000248-zueoyesj 797 10 , , , cord-000248-zueoyesj 797 11 AQP5 AQP5 NNP cord-000248-zueoyesj 797 12 , , , cord-000248-zueoyesj 797 13 and and CC cord-000248-zueoyesj 797 14 AQP9 AQP9 NNPS cord-000248-zueoyesj 797 15 seem seem VBP cord-000248-zueoyesj 797 16 to to TO cord-000248-zueoyesj 797 17 be be VB cord-000248-zueoyesj 797 18 correlated correlate VBN cord-000248-zueoyesj 797 19 with with IN cord-000248-zueoyesj 797 20 melanoma melanoma NN cord-000248-zueoyesj 797 21 progression progression NN cord-000248-zueoyesj 797 22 , , , cord-000248-zueoyesj 797 23 indicating indicate VBG cord-000248-zueoyesj 797 24 a a DT cord-000248-zueoyesj 797 25 common common JJ cord-000248-zueoyesj 797 26 pattern pattern NN cord-000248-zueoyesj 797 27 of of IN cord-000248-zueoyesj 797 28 downregulation downregulation NN cord-000248-zueoyesj 797 29 from from IN cord-000248-zueoyesj 797 30 the the DT cord-000248-zueoyesj 797 31 higher high JJR cord-000248-zueoyesj 797 32 values value NNS cord-000248-zueoyesj 797 33 in in IN cord-000248-zueoyesj 797 34 normal normal JJ cord-000248-zueoyesj 797 35 skin skin NN cord-000248-zueoyesj 797 36 and and CC cord-000248-zueoyesj 797 37 benign benign JJ cord-000248-zueoyesj 797 38 nevi nevus NNS cord-000248-zueoyesj 797 39 ( ( -LRB- cord-000248-zueoyesj 797 40 see see VB cord-000248-zueoyesj 797 41 Figure Figure NNP cord-000248-zueoyesj 797 42 17 17 CD cord-000248-zueoyesj 797 43 ) ) -RRB- cord-000248-zueoyesj 797 44 . . . cord-000248-zueoyesj 798 1 Does do VBZ cord-000248-zueoyesj 798 2 a a DT cord-000248-zueoyesj 798 3 similar similar JJ cord-000248-zueoyesj 798 4 pattern pattern NN cord-000248-zueoyesj 798 5 of of IN cord-000248-zueoyesj 798 6 aquaporin aquaporin JJ cord-000248-zueoyesj 798 7 downregulation downregulation NN cord-000248-zueoyesj 798 8 exist exist VBP cord-000248-zueoyesj 798 9 in in IN cord-000248-zueoyesj 798 10 prostate prostate NN cord-000248-zueoyesj 798 11 cancer cancer NN cord-000248-zueoyesj 798 12 ? ? . cord-000248-zueoyesj 799 1 Wang Wang NNP cord-000248-zueoyesj 799 2 et et NNP cord-000248-zueoyesj 799 3 al al NNP cord-000248-zueoyesj 799 4 . . NNP cord-000248-zueoyesj 799 5 have have VBP cord-000248-zueoyesj 799 6 looked look VBN cord-000248-zueoyesj 799 7 at at IN cord-000248-zueoyesj 799 8 the the DT cord-000248-zueoyesj 799 9 expression expression NN cord-000248-zueoyesj 799 10 and and CC cord-000248-zueoyesj 799 11 localization localization NN cord-000248-zueoyesj 799 12 of of IN cord-000248-zueoyesj 799 13 AQP3 AQP3 NNP cord-000248-zueoyesj 799 14 in in IN cord-000248-zueoyesj 799 15 human human JJ cord-000248-zueoyesj 799 16 prostate prostate NN cord-000248-zueoyesj 799 17 using use VBG cord-000248-zueoyesj 799 18 cell cell NN cord-000248-zueoyesj 799 19 lines line NNS cord-000248-zueoyesj 799 20 as as RB cord-000248-zueoyesj 799 21 well well RB cord-000248-zueoyesj 799 22 as as IN cord-000248-zueoyesj 799 23 patient patient JJ cord-000248-zueoyesj 799 24 samples sample NNS cord-000248-zueoyesj 799 25 . . . cord-000248-zueoyesj 800 1 They -PRON- PRP cord-000248-zueoyesj 800 2 have have VBP cord-000248-zueoyesj 800 3 observed observe VBN cord-000248-zueoyesj 801 1 AQP3 AQP3 NNP cord-000248-zueoyesj 801 2 mRNA mRNA NNP cord-000248-zueoyesj 801 3 ' ' '' cord-000248-zueoyesj 801 4 ' ' '' cord-000248-zueoyesj 801 5 in in IN cord-000248-zueoyesj 801 6 both both CC cord-000248-zueoyesj 801 7 normal normal JJ cord-000248-zueoyesj 801 8 and and CC cord-000248-zueoyesj 801 9 cancerous cancerous JJ cord-000248-zueoyesj 801 10 epithelia epithelium NNS cord-000248-zueoyesj 801 11 of of IN cord-000248-zueoyesj 801 12 human human JJ cord-000248-zueoyesj 801 13 prostate prostate NN cord-000248-zueoyesj 801 14 tissues tissue NNS cord-000248-zueoyesj 801 15 , , , cord-000248-zueoyesj 801 16 but but CC cord-000248-zueoyesj 801 17 not not RB cord-000248-zueoyesj 801 18 in in IN cord-000248-zueoyesj 801 19 the the DT cord-000248-zueoyesj 801 20 mesenchyme mesenchyme NNS cord-000248-zueoyesj 801 21 . . . cord-000248-zueoyesj 802 1 In in IN cord-000248-zueoyesj 802 2 the the DT cord-000248-zueoyesj 802 3 normal normal JJ cord-000248-zueoyesj 802 4 epithelia epithelium NNS cord-000248-zueoyesj 802 5 of of IN cord-000248-zueoyesj 802 6 the the DT cord-000248-zueoyesj 802 7 prostate prostate NN cord-000248-zueoyesj 802 8 , , , cord-000248-zueoyesj 802 9 localization localization NN cord-000248-zueoyesj 802 10 was be VBD cord-000248-zueoyesj 802 11 limited limit VBN cord-000248-zueoyesj 802 12 to to IN cord-000248-zueoyesj 802 13 cell cell NN cord-000248-zueoyesj 802 14 membranes membrane NNS cord-000248-zueoyesj 802 15 , , , cord-000248-zueoyesj 802 16 particularly particularly RB cord-000248-zueoyesj 802 17 the the DT cord-000248-zueoyesj 802 18 basolateral basolateral JJ cord-000248-zueoyesj 802 19 membranes membrane NNS cord-000248-zueoyesj 802 20 . . . cord-000248-zueoyesj 803 1 However however RB cord-000248-zueoyesj 803 2 , , , cord-000248-zueoyesj 803 3 the the DT cord-000248-zueoyesj 803 4 expression expression NN cord-000248-zueoyesj 803 5 of of IN cord-000248-zueoyesj 803 6 AQP3 AQP3 NNP cord-000248-zueoyesj 803 7 protein protein NN cord-000248-zueoyesj 803 8 in in IN cord-000248-zueoyesj 803 9 the the DT cord-000248-zueoyesj 803 10 cancer cancer NN cord-000248-zueoyesj 803 11 epithelia epithelium NNS cord-000248-zueoyesj 803 12 was be VBD cord-000248-zueoyesj 803 13 not not RB cord-000248-zueoyesj 803 14 observed observe VBN cord-000248-zueoyesj 803 15 on on IN cord-000248-zueoyesj 803 16 the the DT cord-000248-zueoyesj 803 17 cell cell NN cord-000248-zueoyesj 803 18 membranes membrane NNS cord-000248-zueoyesj 803 19 . . . cord-000248-zueoyesj 803 20 ' ' '' cord-000248-zueoyesj 803 21 ' ' '' cord-000248-zueoyesj 804 1 This this DT cord-000248-zueoyesj 804 2 finding finding NN cord-000248-zueoyesj 804 3 seems seem VBZ cord-000248-zueoyesj 804 4 to to TO cord-000248-zueoyesj 804 5 implicate implicate VB cord-000248-zueoyesj 804 6 the the DT cord-000248-zueoyesj 804 7 subcellular subcellular JJ cord-000248-zueoyesj 804 8 localization localization NN cord-000248-zueoyesj 804 9 of of IN cord-000248-zueoyesj 804 10 AQP3 AQP3 NNP cord-000248-zueoyesj 804 11 as as IN cord-000248-zueoyesj 804 12 a a DT cord-000248-zueoyesj 804 13 possible possible JJ cord-000248-zueoyesj 804 14 indicator indicator NN cord-000248-zueoyesj 804 15 of of IN cord-000248-zueoyesj 804 16 a a DT cord-000248-zueoyesj 804 17 transition transition NN cord-000248-zueoyesj 804 18 to to IN cord-000248-zueoyesj 804 19 a a DT cord-000248-zueoyesj 804 20 more more RBR cord-000248-zueoyesj 804 21 malignant malignant JJ cord-000248-zueoyesj 804 22 phenotype phenotype NN cord-000248-zueoyesj 804 23 . . . cord-000248-zueoyesj 805 1 Lapointe Lapointe NNP cord-000248-zueoyesj 805 2 's 's POS cord-000248-zueoyesj 805 3 dataset dataset NN cord-000248-zueoyesj 805 4 allows allow VBZ cord-000248-zueoyesj 805 5 us -PRON- PRP cord-000248-zueoyesj 805 6 to to TO cord-000248-zueoyesj 805 7 see see VB cord-000248-zueoyesj 805 8 the the DT cord-000248-zueoyesj 805 9 downregulation downregulation NN cord-000248-zueoyesj 805 10 of of IN cord-000248-zueoyesj 805 11 AQP3 AQP3 NNP cord-000248-zueoyesj 805 12 and and CC cord-000248-zueoyesj 805 13 AQP1 AQP1 NNP cord-000248-zueoyesj 805 14 . . . cord-000248-zueoyesj 806 1 A a DT cord-000248-zueoyesj 806 2 large large JJ cord-000248-zueoyesj 806 3 subgroup subgroup NN cord-000248-zueoyesj 806 4 of of IN cord-000248-zueoyesj 806 5 primary primary JJ cord-000248-zueoyesj 806 6 prostate prostate NN cord-000248-zueoyesj 806 7 tumors tumor NNS cord-000248-zueoyesj 806 8 has have VBZ cord-000248-zueoyesj 806 9 reduced reduce VBN cord-000248-zueoyesj 806 10 levels level NNS cord-000248-zueoyesj 806 11 of of IN cord-000248-zueoyesj 806 12 AQP3 AQP3 NNP cord-000248-zueoyesj 806 13 and and CC cord-000248-zueoyesj 806 14 AQP1 AQP1 NNP cord-000248-zueoyesj 806 15 as as IN cord-000248-zueoyesj 806 16 most most JJS cord-000248-zueoyesj 806 17 of of IN cord-000248-zueoyesj 806 18 the the DT cord-000248-zueoyesj 806 19 lymph lymph NN cord-000248-zueoyesj 806 20 node node NN cord-000248-zueoyesj 806 21 metastasis metastasis NN cord-000248-zueoyesj 806 22 samples sample NNS cord-000248-zueoyesj 806 23 [ [ -LRB- cord-000248-zueoyesj 806 24 Figure figure NN cord-000248-zueoyesj 806 25 18 18 CD cord-000248-zueoyesj 806 26 ] ] -RRB- cord-000248-zueoyesj 806 27 . . . cord-000248-zueoyesj 807 1 One one CD cord-000248-zueoyesj 807 2 critique critique NN cord-000248-zueoyesj 807 3 that that WDT cord-000248-zueoyesj 807 4 we -PRON- PRP cord-000248-zueoyesj 807 5 are be VBP cord-000248-zueoyesj 807 6 aware aware JJ cord-000248-zueoyesj 807 7 we -PRON- PRP cord-000248-zueoyesj 807 8 could could MD cord-000248-zueoyesj 807 9 receive receive VB cord-000248-zueoyesj 807 10 is be VBZ cord-000248-zueoyesj 807 11 that that IN cord-000248-zueoyesj 807 12 the the DT cord-000248-zueoyesj 807 13 current current JJ cord-000248-zueoyesj 807 14 manuscript manuscript NN cord-000248-zueoyesj 807 15 presents present VBZ cord-000248-zueoyesj 807 16 a a DT cord-000248-zueoyesj 807 17 novel novel NN cord-000248-zueoyesj 807 18 methodology methodology NN cord-000248-zueoyesj 807 19 and and CC cord-000248-zueoyesj 807 20 an an DT cord-000248-zueoyesj 807 21 underlying underlie VBG cord-000248-zueoyesj 807 22 unifying unifying JJ cord-000248-zueoyesj 807 23 theory theory NN cord-000248-zueoyesj 807 24 based base VBN cord-000248-zueoyesj 807 25 on on IN cord-000248-zueoyesj 807 26 retrodictions retrodiction NNS cord-000248-zueoyesj 807 27 or or CC cord-000248-zueoyesj 807 28 postdictions postdiction NNS cord-000248-zueoyesj 807 29 . . . cord-000248-zueoyesj 808 1 Indeed indeed RB cord-000248-zueoyesj 808 2 we -PRON- PRP cord-000248-zueoyesj 808 3 have have VBP cord-000248-zueoyesj 808 4 shown show VBN cord-000248-zueoyesj 808 5 that that IN cord-000248-zueoyesj 808 6 the the DT cord-000248-zueoyesj 808 7 use use NN cord-000248-zueoyesj 808 8 of of IN cord-000248-zueoyesj 808 9 the the DT cord-000248-zueoyesj 808 10 Normalized Normalized NNP cord-000248-zueoyesj 808 11 Shannon Shannon NNP cord-000248-zueoyesj 808 12 Entropy Entropy NNP cord-000248-zueoyesj 808 13 and and CC cord-000248-zueoyesj 808 14 the the DT cord-000248-zueoyesj 808 15 Information Information NNP cord-000248-zueoyesj 808 16 Theory Theory NNP cord-000248-zueoyesj 808 17 quantifiers quantifier NNS cord-000248-zueoyesj 808 18 ( ( -LRB- cord-000248-zueoyesj 808 19 the the DT cord-000248-zueoyesj 808 20 M M NNP cord-000248-zueoyesj 808 21 - - HYPH cord-000248-zueoyesj 808 22 complexities complexity NNS cord-000248-zueoyesj 808 23 and and CC cord-000248-zueoyesj 808 24 the the DT cord-000248-zueoyesj 808 25 Jensen Jensen NNP cord-000248-zueoyesj 808 26 - - HYPH cord-000248-zueoyesj 808 27 Shannon Shannon NNP cord-000248-zueoyesj 808 28 divergence divergence NN cord-000248-zueoyesj 808 29 ) ) -RRB- cord-000248-zueoyesj 808 30 allow allow VBP cord-000248-zueoyesj 808 31 to to TO cord-000248-zueoyesj 808 32 monitor monitor VB cord-000248-zueoyesj 808 33 cancer cancer NN cord-000248-zueoyesj 808 34 progression progression NN cord-000248-zueoyesj 808 35 and and CC cord-000248-zueoyesj 808 36 to to TO cord-000248-zueoyesj 808 37 identify identify VB cord-000248-zueoyesj 808 38 the the DT cord-000248-zueoyesj 808 39 best good JJS cord-000248-zueoyesj 808 40 biomarkers biomarker NNS cord-000248-zueoyesj 808 41 that that WDT cord-000248-zueoyesj 808 42 correlate correlate VBP cord-000248-zueoyesj 808 43 with with IN cord-000248-zueoyesj 808 44 the the DT cord-000248-zueoyesj 808 45 transcriptomic transcriptomic JJ cord-000248-zueoyesj 808 46 changes change NNS cord-000248-zueoyesj 808 47 . . . cord-000248-zueoyesj 809 1 Our -PRON- PRP$ cord-000248-zueoyesj 809 2 approach approach NN cord-000248-zueoyesj 809 3 works work VBZ cord-000248-zueoyesj 809 4 in in IN cord-000248-zueoyesj 809 5 a a DT cord-000248-zueoyesj 809 6 retrodiction retrodiction NN cord-000248-zueoyesj 809 7 way way NN cord-000248-zueoyesj 809 8 in in IN cord-000248-zueoyesj 809 9 that that IN cord-000248-zueoyesj 809 10 it -PRON- PRP cord-000248-zueoyesj 809 11 looks look VBZ cord-000248-zueoyesj 809 12 at at IN cord-000248-zueoyesj 809 13 data datum NNS cord-000248-zueoyesj 809 14 already already RB cord-000248-zueoyesj 809 15 obtained obtain VBN cord-000248-zueoyesj 809 16 by by IN cord-000248-zueoyesj 809 17 other other JJ cord-000248-zueoyesj 809 18 studies study NNS cord-000248-zueoyesj 809 19 , , , cord-000248-zueoyesj 809 20 but but CC cord-000248-zueoyesj 809 21 gives give VBZ cord-000248-zueoyesj 809 22 a a DT cord-000248-zueoyesj 809 23 unifying unifying JJ cord-000248-zueoyesj 809 24 framework framework NN cord-000248-zueoyesj 809 25 to to TO cord-000248-zueoyesj 809 26 track track VB cord-000248-zueoyesj 809 27 cancer cancer NN cord-000248-zueoyesj 809 28 progression progression NN cord-000248-zueoyesj 809 29 . . . cord-000248-zueoyesj 810 1 For for IN cord-000248-zueoyesj 810 2 instance instance NN cord-000248-zueoyesj 810 3 , , , cord-000248-zueoyesj 810 4 on on IN cord-000248-zueoyesj 810 5 True True NNP cord-000248-zueoyesj 810 6 et et FW cord-000248-zueoyesj 810 7 al al NNP cord-000248-zueoyesj 810 8 's 's POS cord-000248-zueoyesj 810 9 dataset dataset NN cord-000248-zueoyesj 810 10 , , , cord-000248-zueoyesj 810 11 our -PRON- PRP$ cord-000248-zueoyesj 810 12 unifying unifying JJ cord-000248-zueoyesj 810 13 hallmark hallmark NN cord-000248-zueoyesj 810 14 of of IN cord-000248-zueoyesj 810 15 cancer cancer NN cord-000248-zueoyesj 810 16 gives give VBZ cord-000248-zueoyesj 810 17 not not RB cord-000248-zueoyesj 810 18 only only RB cord-000248-zueoyesj 810 19 MAOA MAOA NNP cord-000248-zueoyesj 810 20 , , , cord-000248-zueoyesj 810 21 which which WDT cord-000248-zueoyesj 810 22 was be VBD cord-000248-zueoyesj 810 23 already already RB cord-000248-zueoyesj 810 24 identified identify VBN cord-000248-zueoyesj 810 25 in in IN cord-000248-zueoyesj 810 26 the the DT cord-000248-zueoyesj 810 27 original original JJ cord-000248-zueoyesj 810 28 publication publication NN cord-000248-zueoyesj 810 29 , , , cord-000248-zueoyesj 810 30 but but CC cord-000248-zueoyesj 810 31 also also RB cord-000248-zueoyesj 810 32 AMACR AMACR NNP cord-000248-zueoyesj 810 33 , , , cord-000248-zueoyesj 810 34 CD40 CD40 NNP cord-000248-zueoyesj 810 35 , , , cord-000248-zueoyesj 810 36 CDK4 CDK4 NNP cord-000248-zueoyesj 810 37 , , , cord-000248-zueoyesj 810 38 etc etc FW cord-000248-zueoyesj 810 39 . . . cord-000248-zueoyesj 811 1 are be VBP cord-000248-zueoyesj 811 2 very very RB cord-000248-zueoyesj 811 3 important important JJ cord-000248-zueoyesj 811 4 biomarkers biomarker NNS cord-000248-zueoyesj 811 5 for for IN cord-000248-zueoyesj 811 6 prostate prostate NN cord-000248-zueoyesj 811 7 cancer cancer NN cord-000248-zueoyesj 811 8 . . . cord-000248-zueoyesj 812 1 Analogously analogously RB cord-000248-zueoyesj 812 2 , , , cord-000248-zueoyesj 812 3 the the DT cord-000248-zueoyesj 812 4 identification identification NN cord-000248-zueoyesj 812 5 of of IN cord-000248-zueoyesj 812 6 KLK3 KLK3 NNP cord-000248-zueoyesj 812 7 / / SYM cord-000248-zueoyesj 812 8 PSA PSA NNP cord-000248-zueoyesj 812 9 in in IN cord-000248-zueoyesj 812 10 Lapointe Lapointe NNP cord-000248-zueoyesj 812 11 's 's POS cord-000248-zueoyesj 812 12 dataset dataset NN cord-000248-zueoyesj 812 13 is be VBZ cord-000248-zueoyesj 812 14 another another DT cord-000248-zueoyesj 812 15 important important JJ cord-000248-zueoyesj 812 16 retrodiction retrodiction NN cord-000248-zueoyesj 812 17 which which WDT cord-000248-zueoyesj 812 18 shows show VBZ cord-000248-zueoyesj 812 19 the the DT cord-000248-zueoyesj 812 20 power power NN cord-000248-zueoyesj 812 21 of of IN cord-000248-zueoyesj 812 22 the the DT cord-000248-zueoyesj 812 23 method method NN cord-000248-zueoyesj 812 24 . . . cord-000248-zueoyesj 813 1 In in IN cord-000248-zueoyesj 813 2 some some DT cord-000248-zueoyesj 813 3 sense sense NN cord-000248-zueoyesj 813 4 our -PRON- PRP$ cord-000248-zueoyesj 813 5 approach approach NN cord-000248-zueoyesj 813 6 also also RB cord-000248-zueoyesj 813 7 works work VBZ cord-000248-zueoyesj 813 8 in in IN cord-000248-zueoyesj 813 9 a a DT cord-000248-zueoyesj 813 10 postdiction postdiction NN cord-000248-zueoyesj 813 11 way way NN cord-000248-zueoyesj 813 12 , , , cord-000248-zueoyesj 813 13 as as IN cord-000248-zueoyesj 813 14 it -PRON- PRP cord-000248-zueoyesj 813 15 helps help VBZ cord-000248-zueoyesj 813 16 to to TO cord-000248-zueoyesj 813 17 evaluate evaluate VB cord-000248-zueoyesj 813 18 the the DT cord-000248-zueoyesj 813 19 speculation speculation NN cord-000248-zueoyesj 813 20 that that IN cord-000248-zueoyesj 813 21 cancer cancer NN cord-000248-zueoyesj 813 22 cells cell NNS cord-000248-zueoyesj 813 23 have have VBP cord-000248-zueoyesj 813 24 ' ' `` cord-000248-zueoyesj 813 25 ' ' '' cord-000248-zueoyesj 813 26 an an DT cord-000248-zueoyesj 813 27 entropic entropic JJ cord-000248-zueoyesj 813 28 devolution devolution NN cord-000248-zueoyesj 813 29 ' ' '' cord-000248-zueoyesj 813 30 ' ' '' cord-000248-zueoyesj 813 31 . . . cord-000248-zueoyesj 814 1 Our -PRON- PRP$ cord-000248-zueoyesj 814 2 results result NNS cord-000248-zueoyesj 814 3 show show VBP cord-000248-zueoyesj 814 4 that that IN cord-000248-zueoyesj 814 5 the the DT cord-000248-zueoyesj 814 6 variations variation NNS cord-000248-zueoyesj 814 7 of of IN cord-000248-zueoyesj 814 8 Normalized Normalized NNP cord-000248-zueoyesj 814 9 Shannon Shannon NNP cord-000248-zueoyesj 814 10 Entropy Entropy NNP cord-000248-zueoyesj 814 11 and and CC cord-000248-zueoyesj 814 12 Jensen Jensen NNP cord-000248-zueoyesj 814 13 - - HYPH cord-000248-zueoyesj 814 14 Shannon Shannon NNP cord-000248-zueoyesj 814 15 divergences divergence NNS cord-000248-zueoyesj 814 16 indeed indeed RB cord-000248-zueoyesj 814 17 give give VBP cord-000248-zueoyesj 814 18 measurable measurable JJ cord-000248-zueoyesj 814 19 changes change NNS cord-000248-zueoyesj 814 20 , , , cord-000248-zueoyesj 814 21 and and CC cord-000248-zueoyesj 814 22 that that IN cord-000248-zueoyesj 814 23 these these DT cord-000248-zueoyesj 814 24 changes change NNS cord-000248-zueoyesj 814 25 are be VBP cord-000248-zueoyesj 814 26 related relate VBN cord-000248-zueoyesj 814 27 to to IN cord-000248-zueoyesj 814 28 important important JJ cord-000248-zueoyesj 814 29 biomarkers biomarker NNS cord-000248-zueoyesj 814 30 in in IN cord-000248-zueoyesj 814 31 the the DT cord-000248-zueoyesj 814 32 two two CD cord-000248-zueoyesj 814 33 types type NNS cord-000248-zueoyesj 814 34 of of IN cord-000248-zueoyesj 814 35 cancer cancer NN cord-000248-zueoyesj 814 36 studied study VBN cord-000248-zueoyesj 814 37 in in IN cord-000248-zueoyesj 814 38 this this DT cord-000248-zueoyesj 814 39 work work NN cord-000248-zueoyesj 814 40 . . . cord-000248-zueoyesj 815 1 In in IN cord-000248-zueoyesj 815 2 addition addition NN cord-000248-zueoyesj 815 3 , , , cord-000248-zueoyesj 815 4 we -PRON- PRP cord-000248-zueoyesj 815 5 remark remark VBP cord-000248-zueoyesj 815 6 that that IN cord-000248-zueoyesj 815 7 we -PRON- PRP cord-000248-zueoyesj 815 8 are be VBP cord-000248-zueoyesj 815 9 literally literally RB cord-000248-zueoyesj 815 10 making make VBG cord-000248-zueoyesj 815 11 hundreds hundred NNS cord-000248-zueoyesj 815 12 , , , cord-000248-zueoyesj 815 13 or or CC cord-000248-zueoyesj 815 14 even even RB cord-000248-zueoyesj 815 15 thousands thousand NNS cord-000248-zueoyesj 815 16 of of IN cord-000248-zueoyesj 815 17 predictions prediction NNS cord-000248-zueoyesj 815 18 . . . cord-000248-zueoyesj 816 1 The the DT cord-000248-zueoyesj 816 2 results result NNS cord-000248-zueoyesj 816 3 in in IN cord-000248-zueoyesj 816 4 the the DT cord-000248-zueoyesj 816 5 ' ' `` cord-000248-zueoyesj 816 6 Supplementary Supplementary NNP cord-000248-zueoyesj 816 7 Material Material NNP cord-000248-zueoyesj 816 8 ' ' '' cord-000248-zueoyesj 816 9 provide provide VB cord-000248-zueoyesj 816 10 this this DT cord-000248-zueoyesj 816 11 information information NN cord-000248-zueoyesj 816 12 for for IN cord-000248-zueoyesj 816 13 the the DT cord-000248-zueoyesj 816 14 detailed detailed JJ cord-000248-zueoyesj 816 15 scrutiny scrutiny NN cord-000248-zueoyesj 816 16 of of IN cord-000248-zueoyesj 816 17 our -PRON- PRP$ cord-000248-zueoyesj 816 18 peers peer NNS cord-000248-zueoyesj 816 19 . . . cord-000248-zueoyesj 817 1 We -PRON- PRP cord-000248-zueoyesj 817 2 believe believe VBP cord-000248-zueoyesj 817 3 that that IN cord-000248-zueoyesj 817 4 other other JJ cord-000248-zueoyesj 817 5 probes probe NNS cord-000248-zueoyesj 817 6 with with IN cord-000248-zueoyesj 817 7 gene gene NN cord-000248-zueoyesj 817 8 expression expression NN cord-000248-zueoyesj 817 9 patterns pattern NNS cord-000248-zueoyesj 817 10 in in IN cord-000248-zueoyesj 817 11 high high JJ cord-000248-zueoyesj 817 12 correlation correlation NN cord-000248-zueoyesj 817 13 with with IN cord-000248-zueoyesj 817 14 the the DT cord-000248-zueoyesj 817 15 probes probe NNS cord-000248-zueoyesj 817 16 discussed discuss VBN cord-000248-zueoyesj 817 17 in in IN cord-000248-zueoyesj 817 18 this this DT cord-000248-zueoyesj 817 19 paper paper NN cord-000248-zueoyesj 817 20 , , , cord-000248-zueoyesj 817 21 and and CC cord-000248-zueoyesj 817 22 perhaps perhaps RB cord-000248-zueoyesj 817 23 less less RBR cord-000248-zueoyesj 817 24 studied study VBN cord-000248-zueoyesj 817 25 by by IN cord-000248-zueoyesj 817 26 immunohistochemistry immunohistochemistry NN cord-000248-zueoyesj 817 27 and and CC cord-000248-zueoyesj 817 28 other other JJ cord-000248-zueoyesj 817 29 methods method NNS cord-000248-zueoyesj 817 30 in in IN cord-000248-zueoyesj 817 31 the the DT cord-000248-zueoyesj 817 32 two two CD cord-000248-zueoyesj 817 33 cancer cancer NN cord-000248-zueoyesj 817 34 types type NNS cord-000248-zueoyesj 817 35 studied study VBN cord-000248-zueoyesj 817 36 here here RB cord-000248-zueoyesj 817 37 , , , cord-000248-zueoyesj 817 38 are be VBP cord-000248-zueoyesj 817 39 worth worth JJ cord-000248-zueoyesj 817 40 exploring explore VBG cord-000248-zueoyesj 817 41 as as IN cord-000248-zueoyesj 817 42 a a DT cord-000248-zueoyesj 817 43 group group NN cord-000248-zueoyesj 817 44 of of IN cord-000248-zueoyesj 817 45 biomarkers biomarker NNS cord-000248-zueoyesj 817 46 . . . cord-000248-zueoyesj 818 1 These these DT cord-000248-zueoyesj 818 2 predictions prediction NNS cord-000248-zueoyesj 818 3 can can MD cord-000248-zueoyesj 818 4 be be VB cord-000248-zueoyesj 818 5 tested test VBN cord-000248-zueoyesj 818 6 with with IN cord-000248-zueoyesj 818 7 further further JJ cord-000248-zueoyesj 818 8 studies study NNS cord-000248-zueoyesj 818 9 on on IN cord-000248-zueoyesj 818 10 staging stage VBG cord-000248-zueoyesj 818 11 and and CC cord-000248-zueoyesj 818 12 patient patient JJ cord-000248-zueoyesj 818 13 stratification stratification NN cord-000248-zueoyesj 818 14 . . . cord-000248-zueoyesj 819 1 A a DT cord-000248-zueoyesj 819 2 very very RB cord-000248-zueoyesj 819 3 recent recent JJ cord-000248-zueoyesj 819 4 study study NN cord-000248-zueoyesj 819 5 by by IN cord-000248-zueoyesj 819 6 Ballal Ballal NNP cord-000248-zueoyesj 819 7 et et NNP cord-000248-zueoyesj 819 8 al al NNP cord-000248-zueoyesj 819 9 . . NNP cord-000248-zueoyesj 819 10 have have VBP cord-000248-zueoyesj 819 11 linked link VBN cord-000248-zueoyesj 819 12 BRCA1 BRCA1 NNP cord-000248-zueoyesj 819 13 to to IN cord-000248-zueoyesj 819 14 telomere telomere NN cord-000248-zueoyesj 819 15 length length NN cord-000248-zueoyesj 819 16 and and CC cord-000248-zueoyesj 819 17 maintenance maintenance NN cord-000248-zueoyesj 819 18 and and CC cord-000248-zueoyesj 819 19 its -PRON- PRP$ cord-000248-zueoyesj 819 20 loss loss NN cord-000248-zueoyesj 819 21 from from IN cord-000248-zueoyesj 819 22 the the DT cord-000248-zueoyesj 819 23 telomere telomere NN cord-000248-zueoyesj 819 24 in in IN cord-000248-zueoyesj 819 25 response response NN cord-000248-zueoyesj 819 26 to to IN cord-000248-zueoyesj 819 27 DNA dna NN cord-000248-zueoyesj 819 28 damage damage NN cord-000248-zueoyesj 819 29 [ [ -LRB- cord-000248-zueoyesj 819 30 720 720 CD cord-000248-zueoyesj 819 31 ] ] -RRB- cord-000248-zueoyesj 820 1 ( ( -LRB- cord-000248-zueoyesj 820 2 see see VB cord-000248-zueoyesj 820 3 also also RB cord-000248-zueoyesj 820 4 [ [ -LRB- cord-000248-zueoyesj 820 5 721 721 CD cord-000248-zueoyesj 820 6 ] ] -RRB- cord-000248-zueoyesj 820 7 ) ) -RRB- cord-000248-zueoyesj 820 8 . . . cord-000248-zueoyesj 821 1 We -PRON- PRP cord-000248-zueoyesj 821 2 have have VBP cord-000248-zueoyesj 821 3 previously previously RB cord-000248-zueoyesj 821 4 mentioned mention VBN cord-000248-zueoyesj 821 5 that that IN cord-000248-zueoyesj 821 6 BRCA1 BRCA1 NNP cord-000248-zueoyesj 821 7 is be VBZ cord-000248-zueoyesj 821 8 a a DT cord-000248-zueoyesj 821 9 conspiquous conspiquous JJ cord-000248-zueoyesj 821 10 biomarker biomarker NN cord-000248-zueoyesj 821 11 arising arise VBG cord-000248-zueoyesj 821 12 from from IN cord-000248-zueoyesj 821 13 the the DT cord-000248-zueoyesj 821 14 analysis analysis NN cord-000248-zueoyesj 821 15 of of IN cord-000248-zueoyesj 821 16 True True NNP cord-000248-zueoyesj 821 17 et et NNP cord-000248-zueoyesj 821 18 al al NNP cord-000248-zueoyesj 821 19 . . NNP cord-000248-zueoyesj 821 20 's 's POS cord-000248-zueoyesj 821 21 dataset dataset NN cord-000248-zueoyesj 821 22 using use VBG cord-000248-zueoyesj 821 23 our -PRON- PRP$ cord-000248-zueoyesj 821 24 methods method NNS cord-000248-zueoyesj 821 25 . . . cord-000248-zueoyesj 822 1 We -PRON- PRP cord-000248-zueoyesj 822 2 found find VBD cord-000248-zueoyesj 822 3 this this DT cord-000248-zueoyesj 822 4 to to TO cord-000248-zueoyesj 822 5 correlate correlate VB cord-000248-zueoyesj 822 6 with with IN cord-000248-zueoyesj 822 7 a a DT cord-000248-zueoyesj 822 8 preivous preivous JJ cord-000248-zueoyesj 822 9 study study NN cord-000248-zueoyesj 822 10 that that WDT cord-000248-zueoyesj 822 11 showed show VBD cord-000248-zueoyesj 822 12 that that IN cord-000248-zueoyesj 822 13 BRCA1 BRCA1 NNP cord-000248-zueoyesj 822 14 has have VBZ cord-000248-zueoyesj 822 15 a a DT cord-000248-zueoyesj 822 16 reduced reduce VBN cord-000248-zueoyesj 822 17 expression expression NN cord-000248-zueoyesj 822 18 in in IN cord-000248-zueoyesj 822 19 immortalized immortalize VBN cord-000248-zueoyesj 822 20 prostate prostate NN cord-000248-zueoyesj 822 21 epithelial epithelial JJ cord-000248-zueoyesj 822 22 cells cell NNS cord-000248-zueoyesj 822 23 before before IN cord-000248-zueoyesj 822 24 and and CC cord-000248-zueoyesj 822 25 after after IN cord-000248-zueoyesj 822 26 their -PRON- PRP$ cord-000248-zueoyesj 822 27 conversion conversion NN cord-000248-zueoyesj 822 28 to to IN cord-000248-zueoyesj 822 29 tumorigenicity tumorigenicity NN cord-000248-zueoyesj 822 30 [ [ -LRB- cord-000248-zueoyesj 822 31 493 493 CD cord-000248-zueoyesj 822 32 ] ] -RRB- cord-000248-zueoyesj 822 33 . . . cord-000248-zueoyesj 823 1 We -PRON- PRP cord-000248-zueoyesj 823 2 also also RB cord-000248-zueoyesj 823 3 mentioned mention VBD cord-000248-zueoyesj 823 4 that that IN cord-000248-zueoyesj 823 5 the the DT cord-000248-zueoyesj 823 6 knockdown knockdown NN cord-000248-zueoyesj 823 7 of of IN cord-000248-zueoyesj 823 8 BRCA1 BRCA1 NNP cord-000248-zueoyesj 823 9 leads lead VBZ cord-000248-zueoyesj 823 10 to to IN cord-000248-zueoyesj 823 11 anaccumulation anaccumulation NN cord-000248-zueoyesj 823 12 of of IN cord-000248-zueoyesj 823 13 multinucleated multinucleate VBN cord-000248-zueoyesj 823 14 cells cell NNS cord-000248-zueoyesj 823 15 [ [ -LRB- cord-000248-zueoyesj 823 16 492 492 CD cord-000248-zueoyesj 823 17 ] ] -RRB- cord-000248-zueoyesj 823 18 , , , cord-000248-zueoyesj 823 19 preserving preserve VBG cord-000248-zueoyesj 823 20 chromosomal chromosomal JJ cord-000248-zueoyesj 823 21 stability stability NN cord-000248-zueoyesj 823 22 [ [ -LRB- cord-000248-zueoyesj 823 23 490 490 CD cord-000248-zueoyesj 823 24 ] ] -RRB- cord-000248-zueoyesj 823 25 . . . cord-000248-zueoyesj 824 1 Ballal Ballal NNP cord-000248-zueoyesj 824 2 et et FW cord-000248-zueoyesj 824 3 al al NNP cord-000248-zueoyesj 824 4 . . . cord-000248-zueoyesj 825 1 telomeric telomeric NNP cord-000248-zueoyesj 825 2 ChIP ChIP NNP cord-000248-zueoyesj 825 3 assays assay NNS cord-000248-zueoyesj 825 4 to to TO cord-000248-zueoyesj 825 5 detect detect VB cord-000248-zueoyesj 825 6 BRCA1 BRCA1 NNP cord-000248-zueoyesj 825 7 at at IN cord-000248-zueoyesj 825 8 the the DT cord-000248-zueoyesj 825 9 telomere telomere NN cord-000248-zueoyesj 825 10 and and CC cord-000248-zueoyesj 825 11 reported report VBD cord-000248-zueoyesj 825 12 time time NN cord-000248-zueoyesj 825 13 - - HYPH cord-000248-zueoyesj 825 14 dependent dependent JJ cord-000248-zueoyesj 825 15 loss loss NN cord-000248-zueoyesj 825 16 of of IN cord-000248-zueoyesj 825 17 BRCA1 BRCA1 NNP cord-000248-zueoyesj 825 18 from from IN cord-000248-zueoyesj 825 19 the the DT cord-000248-zueoyesj 825 20 telomere telomere NN cord-000248-zueoyesj 825 21 following follow VBG cord-000248-zueoyesj 825 22 DNA dna NN cord-000248-zueoyesj 825 23 damage damage NN cord-000248-zueoyesj 825 24 . . . cord-000248-zueoyesj 826 1 Due due IN cord-000248-zueoyesj 826 2 to to IN cord-000248-zueoyesj 826 3 the the DT cord-000248-zueoyesj 826 4 role role NN cord-000248-zueoyesj 826 5 of of IN cord-000248-zueoyesj 826 6 telomeres telomere NNS cord-000248-zueoyesj 826 7 in in IN cord-000248-zueoyesj 826 8 maintaining maintain VBG cord-000248-zueoyesj 826 9 chromosomal chromosomal JJ cord-000248-zueoyesj 826 10 stability stability NN cord-000248-zueoyesj 826 11 [ [ -LRB- cord-000248-zueoyesj 826 12 722 722 CD cord-000248-zueoyesj 826 13 ] ] -RRB- cord-000248-zueoyesj 826 14 and and CC cord-000248-zueoyesj 826 15 the the DT cord-000248-zueoyesj 826 16 inverse inverse JJ cord-000248-zueoyesj 826 17 correlation correlation NN cord-000248-zueoyesj 826 18 of of IN cord-000248-zueoyesj 826 19 telomere telomere NN cord-000248-zueoyesj 826 20 length length NN cord-000248-zueoyesj 826 21 and and CC cord-000248-zueoyesj 826 22 divergent divergent JJ cord-000248-zueoyesj 826 23 karyotypes karyotype NNS cord-000248-zueoyesj 826 24 in in IN cord-000248-zueoyesj 826 25 prostate prostate NN cord-000248-zueoyesj 826 26 cancer cancer NN cord-000248-zueoyesj 826 27 cell cell NN cord-000248-zueoyesj 826 28 lines line NNS cord-000248-zueoyesj 826 29 [ [ -LRB- cord-000248-zueoyesj 826 30 723 723 CD cord-000248-zueoyesj 826 31 , , , cord-000248-zueoyesj 826 32 724 724 CD cord-000248-zueoyesj 826 33 ] ] -RRB- cord-000248-zueoyesj 826 34 ( ( -LRB- cord-000248-zueoyesj 826 35 as as RB cord-000248-zueoyesj 826 36 well well RB cord-000248-zueoyesj 826 37 as as IN cord-000248-zueoyesj 826 38 the the DT cord-000248-zueoyesj 826 39 recognized recognize VBN cord-000248-zueoyesj 826 40 role role NN cord-000248-zueoyesj 826 41 of of IN cord-000248-zueoyesj 826 42 telomere telomere NN cord-000248-zueoyesj 826 43 dysfunction dysfunction NN cord-000248-zueoyesj 826 44 in in IN cord-000248-zueoyesj 826 45 the the DT cord-000248-zueoyesj 826 46 induction induction NN cord-000248-zueoyesj 826 47 of of IN cord-000248-zueoyesj 826 48 apoptosis apoptosis NN cord-000248-zueoyesj 826 49 or or CC cord-000248-zueoyesj 826 50 senescence senescence NN cord-000248-zueoyesj 826 51 in in IN cord-000248-zueoyesj 826 52 vivo vivo NN cord-000248-zueoyesj 826 53 [ [ -LRB- cord-000248-zueoyesj 826 54 725 725 CD cord-000248-zueoyesj 826 55 , , , cord-000248-zueoyesj 826 56 726 726 CD cord-000248-zueoyesj 826 57 , , , cord-000248-zueoyesj 826 58 727 727 CD cord-000248-zueoyesj 826 59 , , , cord-000248-zueoyesj 826 60 728 728 CD cord-000248-zueoyesj 826 61 , , , cord-000248-zueoyesj 826 62 729 729 CD cord-000248-zueoyesj 826 63 , , , cord-000248-zueoyesj 826 64 730 730 CD cord-000248-zueoyesj 826 65 ] ] -RRB- cord-000248-zueoyesj 826 66 , , , cord-000248-zueoyesj 826 67 increase increase NN cord-000248-zueoyesj 826 68 of of IN cord-000248-zueoyesj 826 69 mutation mutation NN cord-000248-zueoyesj 826 70 rates rate NNS cord-000248-zueoyesj 826 71 [ [ -LRB- cord-000248-zueoyesj 826 72 731 731 CD cord-000248-zueoyesj 826 73 ] ] -RRB- cord-000248-zueoyesj 826 74 , , , cord-000248-zueoyesj 826 75 DNA dna NN cord-000248-zueoyesj 826 76 fragmentation fragmentation NN cord-000248-zueoyesj 826 77 [ [ -LRB- cord-000248-zueoyesj 826 78 732 732 CD cord-000248-zueoyesj 826 79 ] ] -RRB- cord-000248-zueoyesj 826 80 , , , cord-000248-zueoyesj 826 81 and and CC cord-000248-zueoyesj 826 82 their -PRON- PRP$ cord-000248-zueoyesj 826 83 relation relation NN cord-000248-zueoyesj 826 84 with with IN cord-000248-zueoyesj 826 85 DNA dna NN cord-000248-zueoyesj 826 86 damage damage NN cord-000248-zueoyesj 826 87 signalling signal VBG cord-000248-zueoyesj 826 88 [ [ -LRB- cord-000248-zueoyesj 826 89 733 733 CD cord-000248-zueoyesj 826 90 ] ] -RRB- cord-000248-zueoyesj 826 91 ) ) -RRB- cord-000248-zueoyesj 827 1 , , , cord-000248-zueoyesj 827 2 we -PRON- PRP cord-000248-zueoyesj 827 3 checked check VBD cord-000248-zueoyesj 827 4 for for IN cord-000248-zueoyesj 827 5 other other JJ cord-000248-zueoyesj 827 6 probes probe NNS cord-000248-zueoyesj 827 7 of of IN cord-000248-zueoyesj 827 8 genes gene NNS cord-000248-zueoyesj 827 9 involved involve VBN cord-000248-zueoyesj 827 10 in in IN cord-000248-zueoyesj 827 11 telomeric telomeric JJ cord-000248-zueoyesj 827 12 function function NN cord-000248-zueoyesj 827 13 . . . cord-000248-zueoyesj 828 1 From from IN cord-000248-zueoyesj 828 2 those those DT cord-000248-zueoyesj 828 3 which which WDT cord-000248-zueoyesj 828 4 we -PRON- PRP cord-000248-zueoyesj 828 5 were be VBD cord-000248-zueoyesj 828 6 able able JJ cord-000248-zueoyesj 828 7 to to TO cord-000248-zueoyesj 828 8 identify identify VB cord-000248-zueoyesj 828 9 in in IN cord-000248-zueoyesj 828 10 True True NNP cord-000248-zueoyesj 828 11 et et NNP cord-000248-zueoyesj 828 12 al al NNP cord-000248-zueoyesj 828 13 's 's POS cord-000248-zueoyesj 828 14 dataset dataset NN cord-000248-zueoyesj 828 15 , , , cord-000248-zueoyesj 828 16 we -PRON- PRP cord-000248-zueoyesj 828 17 have have VBP cord-000248-zueoyesj 828 18 found find VBN cord-000248-zueoyesj 828 19 a a DT cord-000248-zueoyesj 828 20 strong strong JJ cord-000248-zueoyesj 828 21 high high JJ cord-000248-zueoyesj 828 22 correlation correlation NN cord-000248-zueoyesj 828 23 of of IN cord-000248-zueoyesj 828 24 the the DT cord-000248-zueoyesj 828 25 expression expression NN cord-000248-zueoyesj 828 26 of of IN cord-000248-zueoyesj 828 27 BRCA1 BRCA1 NNP cord-000248-zueoyesj 828 28 with with IN cord-000248-zueoyesj 828 29 TERF2 terf2 NN cord-000248-zueoyesj 828 30 / / SYM cord-000248-zueoyesj 828 31 TRF2 TRF2 NNP cord-000248-zueoyesj 828 32 ( ( -LRB- cord-000248-zueoyesj 828 33 telomeric telomeric JJ cord-000248-zueoyesj 828 34 repeat repeat NN cord-000248-zueoyesj 828 35 binding bind VBG cord-000248-zueoyesj 828 36 factor factor NN cord-000248-zueoyesj 828 37 2 2 CD cord-000248-zueoyesj 828 38 ) ) -RRB- cord-000248-zueoyesj 828 39 [ [ -LRB- cord-000248-zueoyesj 828 40 734 734 CD cord-000248-zueoyesj 828 41 ] ] -RRB- cord-000248-zueoyesj 828 42 and and CC cord-000248-zueoyesj 828 43 a a DT cord-000248-zueoyesj 828 44 negative negative JJ cord-000248-zueoyesj 828 45 correlation correlation NN cord-000248-zueoyesj 828 46 with with IN cord-000248-zueoyesj 828 47 the the DT cord-000248-zueoyesj 828 48 expression expression NN cord-000248-zueoyesj 828 49 pattern pattern NN cord-000248-zueoyesj 828 50 of of IN cord-000248-zueoyesj 828 51 TERF2IP terf2ip NN cord-000248-zueoyesj 828 52 ( ( -LRB- cord-000248-zueoyesj 828 53 telomeric telomeric JJ cord-000248-zueoyesj 828 54 repeat repeat NN cord-000248-zueoyesj 828 55 binding bind VBG cord-000248-zueoyesj 828 56 factor factor NN cord-000248-zueoyesj 828 57 2 2 CD cord-000248-zueoyesj 828 58 , , , cord-000248-zueoyesj 828 59 interacting interact VBG cord-000248-zueoyesj 828 60 protein protein NN cord-000248-zueoyesj 828 61 ) ) -RRB- cord-000248-zueoyesj 829 1 [ [ -LRB- cord-000248-zueoyesj 829 2 Figure figure NN cord-000248-zueoyesj 829 3 19 19 CD cord-000248-zueoyesj 829 4 ] ] -RRB- cord-000248-zueoyesj 829 5 . . . cord-000248-zueoyesj 830 1 Finally finally RB cord-000248-zueoyesj 830 2 , , , cord-000248-zueoyesj 830 3 one one CD cord-000248-zueoyesj 830 4 particular particular JJ cord-000248-zueoyesj 830 5 type type NN cord-000248-zueoyesj 830 6 of of IN cord-000248-zueoyesj 830 7 probes probe NNS cord-000248-zueoyesj 830 8 has have VBZ cord-000248-zueoyesj 830 9 also also RB cord-000248-zueoyesj 830 10 caught catch VBN cord-000248-zueoyesj 830 11 our -PRON- PRP$ cord-000248-zueoyesj 830 12 attention attention NN cord-000248-zueoyesj 830 13 , , , cord-000248-zueoyesj 830 14 and and CC cord-000248-zueoyesj 830 15 we -PRON- PRP cord-000248-zueoyesj 830 16 would would MD cord-000248-zueoyesj 830 17 like like VB cord-000248-zueoyesj 830 18 to to TO cord-000248-zueoyesj 830 19 refer refer VB cord-000248-zueoyesj 830 20 to to IN cord-000248-zueoyesj 830 21 them -PRON- PRP cord-000248-zueoyesj 830 22 before before IN cord-000248-zueoyesj 830 23 concluding conclude VBG cord-000248-zueoyesj 830 24 this this DT cord-000248-zueoyesj 830 25 section section NN cord-000248-zueoyesj 830 26 . . . cord-000248-zueoyesj 831 1 With with IN cord-000248-zueoyesj 831 2 the the DT cord-000248-zueoyesj 831 3 denomination denomination NN cord-000248-zueoyesj 831 4 of of IN cord-000248-zueoyesj 831 5 ' ' `` cord-000248-zueoyesj 831 6 non non JJ cord-000248-zueoyesj 831 7 - - JJ cord-000248-zueoyesj 831 8 coding coding JJ cord-000248-zueoyesj 831 9 RNA rna NN cord-000248-zueoyesj 831 10 ' ' '' cord-000248-zueoyesj 831 11 we -PRON- PRP cord-000248-zueoyesj 831 12 identify identify VBP cord-000248-zueoyesj 831 13 those those DT cord-000248-zueoyesj 831 14 RNA RNA NNP cord-000248-zueoyesj 831 15 molecules molecule NNS cord-000248-zueoyesj 831 16 which which WDT cord-000248-zueoyesj 831 17 are be VBP cord-000248-zueoyesj 831 18 functional functional JJ cord-000248-zueoyesj 831 19 but but CC cord-000248-zueoyesj 831 20 that that DT cord-000248-zueoyesj 831 21 are be VBP cord-000248-zueoyesj 831 22 not not RB cord-000248-zueoyesj 831 23 translated translate VBN cord-000248-zueoyesj 831 24 into into IN cord-000248-zueoyesj 831 25 proteins protein NNS cord-000248-zueoyesj 831 26 . . . cord-000248-zueoyesj 832 1 Many many JJ cord-000248-zueoyesj 832 2 microarray microarray NN cord-000248-zueoyesj 832 3 chips chip NNS cord-000248-zueoyesj 832 4 contain contain VBP cord-000248-zueoyesj 832 5 probes probe NNS cord-000248-zueoyesj 832 6 that that WDT cord-000248-zueoyesj 832 7 are be VBP cord-000248-zueoyesj 832 8 annotated annotate VBN cord-000248-zueoyesj 832 9 as as IN cord-000248-zueoyesj 832 10 ' ' `` cord-000248-zueoyesj 832 11 non non JJ cord-000248-zueoyesj 832 12 - - JJ cord-000248-zueoyesj 832 13 protein protein JJ cord-000248-zueoyesj 832 14 coding coding NN cord-000248-zueoyesj 832 15 ' ' '' cord-000248-zueoyesj 832 16 , , , cord-000248-zueoyesj 832 17 indicating indicate VBG cord-000248-zueoyesj 832 18 that that IN cord-000248-zueoyesj 832 19 there there EX cord-000248-zueoyesj 832 20 might may MD cord-000248-zueoyesj 832 21 be be VB cord-000248-zueoyesj 832 22 some some DT cord-000248-zueoyesj 832 23 valuable valuable JJ cord-000248-zueoyesj 832 24 expression expression NN cord-000248-zueoyesj 832 25 data datum NNS cord-000248-zueoyesj 832 26 that that WDT cord-000248-zueoyesj 832 27 we -PRON- PRP cord-000248-zueoyesj 832 28 can can MD cord-000248-zueoyesj 832 29 also also RB cord-000248-zueoyesj 832 30 mine mine VB cord-000248-zueoyesj 832 31 for for IN cord-000248-zueoyesj 832 32 information information NN cord-000248-zueoyesj 832 33 . . . cord-000248-zueoyesj 833 1 We -PRON- PRP cord-000248-zueoyesj 833 2 note note VBP cord-000248-zueoyesj 833 3 that that IN cord-000248-zueoyesj 833 4 our -PRON- PRP$ cord-000248-zueoyesj 833 5 method method NN cord-000248-zueoyesj 833 6 , , , cord-000248-zueoyesj 833 7 although although IN cord-000248-zueoyesj 833 8 employing employ VBG cord-000248-zueoyesj 833 9 transcriptomic transcriptomic NNP cord-000248-zueoyesj 833 10 data datum NNS cord-000248-zueoyesj 833 11 , , , cord-000248-zueoyesj 833 12 does do VBZ cord-000248-zueoyesj 833 13 not not RB cord-000248-zueoyesj 833 14 limit limit VB cord-000248-zueoyesj 833 15 its -PRON- PRP$ cord-000248-zueoyesj 833 16 application application NN cord-000248-zueoyesj 833 17 to to IN cord-000248-zueoyesj 833 18 proteincoding proteincode VBG cord-000248-zueoyesj 833 19 information information NN cord-000248-zueoyesj 833 20 , , , cord-000248-zueoyesj 833 21 and and CC cord-000248-zueoyesj 833 22 that that IN cord-000248-zueoyesj 833 23 the the DT cord-000248-zueoyesj 833 24 combined combine VBN cord-000248-zueoyesj 833 25 use use NN cord-000248-zueoyesj 833 26 of of IN cord-000248-zueoyesj 833 27 protein protein NN cord-000248-zueoyesj 833 28 - - HYPH cord-000248-zueoyesj 833 29 coding code VBG cord-000248-zueoyesj 833 30 and and CC cord-000248-zueoyesj 833 31 non non JJ cord-000248-zueoyesj 833 32 - - JJ cord-000248-zueoyesj 833 33 coding coding JJ cord-000248-zueoyesj 833 34 protein protein NN cord-000248-zueoyesj 833 35 probe probe NN cord-000248-zueoyesj 833 36 expression expression NN cord-000248-zueoyesj 833 37 would would MD cord-000248-zueoyesj 833 38 allow allow VB cord-000248-zueoyesj 833 39 a a DT cord-000248-zueoyesj 833 40 more more RBR cord-000248-zueoyesj 833 41 comprehensive comprehensive JJ cord-000248-zueoyesj 833 42 view view NN cord-000248-zueoyesj 833 43 of of IN cord-000248-zueoyesj 833 44 the the DT cord-000248-zueoyesj 833 45 transcriptional transcriptional JJ cord-000248-zueoyesj 833 46 state state NN cord-000248-zueoyesj 833 47 of of IN cord-000248-zueoyesj 833 48 the the DT cord-000248-zueoyesj 833 49 cell cell NN cord-000248-zueoyesj 833 50 . . . cord-000248-zueoyesj 834 1 Among among IN cord-000248-zueoyesj 834 2 non non JJ cord-000248-zueoyesj 834 3 - - JJ cord-000248-zueoyesj 834 4 protein protein JJ cord-000248-zueoyesj 834 5 coding coding NN cord-000248-zueoyesj 834 6 , , , cord-000248-zueoyesj 834 7 microRNAs microRNAs NNPS cord-000248-zueoyesj 834 8 [ [ -LRB- cord-000248-zueoyesj 834 9 735 735 CD cord-000248-zueoyesj 834 10 ] ] -RRB- cord-000248-zueoyesj 834 11 are be VBP cord-000248-zueoyesj 834 12 gaining gain VBG cord-000248-zueoyesj 834 13 acceptance acceptance NN cord-000248-zueoyesj 834 14 as as IN cord-000248-zueoyesj 834 15 key key JJ cord-000248-zueoyesj 834 16 players player NNS cord-000248-zueoyesj 834 17 in in IN cord-000248-zueoyesj 834 18 several several JJ cord-000248-zueoyesj 834 19 cancers cancer NNS cord-000248-zueoyesj 834 20 [ [ -LRB- cord-000248-zueoyesj 834 21 736 736 CD cord-000248-zueoyesj 834 22 , , , cord-000248-zueoyesj 834 23 737 737 CD cord-000248-zueoyesj 834 24 , , , cord-000248-zueoyesj 834 25 738 738 CD cord-000248-zueoyesj 834 26 ] ] -RRB- cord-000248-zueoyesj 834 27 ( ( -LRB- cord-000248-zueoyesj 834 28 including include VBG cord-000248-zueoyesj 834 29 prostate prostate NN cord-000248-zueoyesj 834 30 cancer cancer NN cord-000248-zueoyesj 834 31 [ [ -LRB- cord-000248-zueoyesj 834 32 739 739 CD cord-000248-zueoyesj 834 33 , , , cord-000248-zueoyesj 834 34 740 740 CD cord-000248-zueoyesj 834 35 ] ] -RRB- cord-000248-zueoyesj 834 36 ) ) -RRB- cord-000248-zueoyesj 834 37 , , , cord-000248-zueoyesj 834 38 but but CC cord-000248-zueoyesj 834 39 the the DT cord-000248-zueoyesj 834 40 so so RB cord-000248-zueoyesj 834 41 - - HYPH cord-000248-zueoyesj 834 42 called call VBN cord-000248-zueoyesj 834 43 ' ' '' cord-000248-zueoyesj 834 44 ' ' `` cord-000248-zueoyesj 834 45 long long JJ cord-000248-zueoyesj 834 46 noncoding noncoding JJ cord-000248-zueoyesj 834 47 RNAs rna NNS cord-000248-zueoyesj 834 48 ' ' POS cord-000248-zueoyesj 834 49 ' ' '' cord-000248-zueoyesj 834 50 [ [ -LRB- cord-000248-zueoyesj 834 51 741 741 CD cord-000248-zueoyesj 834 52 ] ] -RRB- cord-000248-zueoyesj 834 53 are be VBP cord-000248-zueoyesj 834 54 also also RB cord-000248-zueoyesj 834 55 gaining gain VBG cord-000248-zueoyesj 834 56 a a DT cord-000248-zueoyesj 834 57 place place NN cord-000248-zueoyesj 834 58 in in IN cord-000248-zueoyesj 834 59 the the DT cord-000248-zueoyesj 834 60 scenario scenario NN cord-000248-zueoyesj 834 61 of of IN cord-000248-zueoyesj 834 62 cancer cancer NN cord-000248-zueoyesj 834 63 biomarkers biomarker NNS cord-000248-zueoyesj 834 64 ( ( -LRB- cord-000248-zueoyesj 834 65 see see VB cord-000248-zueoyesj 834 66 [ [ -LRB- cord-000248-zueoyesj 834 67 742 742 CD cord-000248-zueoyesj 834 68 ] ] -RRB- cord-000248-zueoyesj 834 69 , , , cord-000248-zueoyesj 834 70 and and CC cord-000248-zueoyesj 834 71 [ [ -LRB- cord-000248-zueoyesj 834 72 743 743 CD cord-000248-zueoyesj 834 73 , , , cord-000248-zueoyesj 834 74 744 744 CD cord-000248-zueoyesj 834 75 , , , cord-000248-zueoyesj 834 76 745 745 CD cord-000248-zueoyesj 834 77 ] ] -RRB- cord-000248-zueoyesj 834 78 ) ) -RRB- cord-000248-zueoyesj 834 79 . . . cord-000248-zueoyesj 835 1 We -PRON- PRP cord-000248-zueoyesj 835 2 thus thus RB cord-000248-zueoyesj 835 3 turned turn VBD cord-000248-zueoyesj 835 4 our -PRON- PRP$ cord-000248-zueoyesj 835 5 attention attention NN cord-000248-zueoyesj 835 6 to to IN cord-000248-zueoyesj 835 7 these these DT cord-000248-zueoyesj 835 8 probes probe NNS cord-000248-zueoyesj 835 9 that that WDT cord-000248-zueoyesj 835 10 have have VBP cord-000248-zueoyesj 835 11 been be VBN cord-000248-zueoyesj 835 12 annotated annotate VBN cord-000248-zueoyesj 835 13 as as IN cord-000248-zueoyesj 835 14 ' ' '' cord-000248-zueoyesj 835 15 ' ' `` cord-000248-zueoyesj 835 16 nonprotein nonprotein NNP cord-000248-zueoyesj 835 17 coding code VBG cord-000248-zueoyesj 835 18 ' ' '' cord-000248-zueoyesj 835 19 ' ' '' cord-000248-zueoyesj 835 20 and and CC cord-000248-zueoyesj 835 21 we -PRON- PRP cord-000248-zueoyesj 835 22 highlight highlight VBP cord-000248-zueoyesj 835 23 some some DT cord-000248-zueoyesj 835 24 of of IN cord-000248-zueoyesj 835 25 them -PRON- PRP cord-000248-zueoyesj 835 26 that that WDT cord-000248-zueoyesj 835 27 have have VBP cord-000248-zueoyesj 835 28 very very RB cord-000248-zueoyesj 835 29 high high JJ cord-000248-zueoyesj 835 30 correlation correlation NN cord-000248-zueoyesj 835 31 values value NNS cord-000248-zueoyesj 835 32 with with IN cord-000248-zueoyesj 835 33 the the DT cord-000248-zueoyesj 835 34 Normalized Normalized NNP cord-000248-zueoyesj 835 35 Shannon Shannon NNP cord-000248-zueoyesj 835 36 Entropy Entropy NNP cord-000248-zueoyesj 835 37 in in IN cord-000248-zueoyesj 835 38 True True NNP cord-000248-zueoyesj 835 39 et et NNP cord-000248-zueoyesj 835 40 al al NNP cord-000248-zueoyesj 835 41 's 's POS cord-000248-zueoyesj 835 42 prostate prostate NN cord-000248-zueoyesj 835 43 cancer cancer NN cord-000248-zueoyesj 835 44 dataset dataset NN cord-000248-zueoyesj 835 45 . . . cord-000248-zueoyesj 836 1 In in IN cord-000248-zueoyesj 836 2 particular particular JJ cord-000248-zueoyesj 836 3 , , , cord-000248-zueoyesj 836 4 the the DT cord-000248-zueoyesj 836 5 probes probe NNS cord-000248-zueoyesj 836 6 for for IN cord-000248-zueoyesj 836 7 MALAT1/ malat1/ JJ cord-000248-zueoyesj 836 8 MALAT-1 MALAT-1 NNP cord-000248-zueoyesj 836 9 [ [ -LRB- cord-000248-zueoyesj 836 10 742 742 CD cord-000248-zueoyesj 836 11 , , , cord-000248-zueoyesj 836 12 746 746 CD cord-000248-zueoyesj 836 13 , , , cord-000248-zueoyesj 836 14 747 747 CD cord-000248-zueoyesj 836 15 , , , cord-000248-zueoyesj 836 16 748 748 CD cord-000248-zueoyesj 836 17 , , , cord-000248-zueoyesj 836 18 749 749 CD cord-000248-zueoyesj 836 19 , , , cord-000248-zueoyesj 836 20 750 750 CD cord-000248-zueoyesj 836 21 , , , cord-000248-zueoyesj 836 22 751 751 CD cord-000248-zueoyesj 836 23 , , , cord-000248-zueoyesj 836 24 752 752 CD cord-000248-zueoyesj 836 25 , , , cord-000248-zueoyesj 836 26 753 753 CD cord-000248-zueoyesj 836 27 , , , cord-000248-zueoyesj 836 28 754 754 CD cord-000248-zueoyesj 836 29 , , , cord-000248-zueoyesj 836 30 755 755 CD cord-000248-zueoyesj 836 31 , , , cord-000248-zueoyesj 836 32 756 756 CD cord-000248-zueoyesj 836 33 , , , cord-000248-zueoyesj 836 34 757 757 CD cord-000248-zueoyesj 836 35 , , , cord-000248-zueoyesj 836 36 758 758 CD cord-000248-zueoyesj 836 37 ] ] -RRB- cord-000248-zueoyesj 836 38 have have VBP cord-000248-zueoyesj 836 39 a a DT cord-000248-zueoyesj 836 40 very very RB cord-000248-zueoyesj 836 41 conspiquous conspiquous JJ cord-000248-zueoyesj 836 42 position position NN cord-000248-zueoyesj 836 43 ( ( -LRB- cord-000248-zueoyesj 836 44 See see VB cord-000248-zueoyesj 836 45 Figure figure NN cord-000248-zueoyesj 836 46 20 20 CD cord-000248-zueoyesj 836 47 ) ) -RRB- cord-000248-zueoyesj 836 48 . . . cord-000248-zueoyesj 837 1 They -PRON- PRP cord-000248-zueoyesj 837 2 located locate VBD cord-000248-zueoyesj 837 3 very very RB cord-000248-zueoyesj 837 4 closely closely RB cord-000248-zueoyesj 837 5 to to IN cord-000248-zueoyesj 837 6 other other JJ cord-000248-zueoyesj 837 7 protein protein NN cord-000248-zueoyesj 837 8 coding code VBG cord-000248-zueoyesj 837 9 biomarkers biomarker NNS cord-000248-zueoyesj 837 10 that that WDT cord-000248-zueoyesj 837 11 have have VBP cord-000248-zueoyesj 837 12 also also RB cord-000248-zueoyesj 837 13 lost lose VBN cord-000248-zueoyesj 837 14 expression expression NN cord-000248-zueoyesj 837 15 and and CC cord-000248-zueoyesj 837 16 have have VBP cord-000248-zueoyesj 837 17 been be VBN cord-000248-zueoyesj 837 18 discussed discuss VBN cord-000248-zueoyesj 837 19 in in IN cord-000248-zueoyesj 837 20 this this DT cord-000248-zueoyesj 837 21 work work NN cord-000248-zueoyesj 837 22 like like IN cord-000248-zueoyesj 837 23 SFPQ SFPQ NNP cord-000248-zueoyesj 837 24 , , , cord-000248-zueoyesj 837 25 CD40 CD40 NNP cord-000248-zueoyesj 837 26 , , , cord-000248-zueoyesj 837 27 BRCA1 BRCA1 NNP cord-000248-zueoyesj 837 28 , , , cord-000248-zueoyesj 837 29 and and CC cord-000248-zueoyesj 837 30 TP53 TP53 NNP cord-000248-zueoyesj 837 31 ( ( -LRB- cord-000248-zueoyesj 837 32 see see VB cord-000248-zueoyesj 837 33 Figure Figure NNP cord-000248-zueoyesj 837 34 16 16 CD cord-000248-zueoyesj 837 35 ) ) -RRB- cord-000248-zueoyesj 837 36 . . . cord-000248-zueoyesj 838 1 MALAT1 MALAT1 NNP cord-000248-zueoyesj 838 2 has have VBZ cord-000248-zueoyesj 838 3 been be VBN cord-000248-zueoyesj 838 4 recently recently RB cord-000248-zueoyesj 838 5 pointed point VBN cord-000248-zueoyesj 838 6 as as IN cord-000248-zueoyesj 838 7 a a DT cord-000248-zueoyesj 838 8 biomarker biomarker NN cord-000248-zueoyesj 838 9 in in IN cord-000248-zueoyesj 838 10 primary primary JJ cord-000248-zueoyesj 838 11 human human JJ cord-000248-zueoyesj 838 12 lobular lobular NNP cord-000248-zueoyesj 838 13 breast breast NN cord-000248-zueoyesj 838 14 cancer cancer NN cord-000248-zueoyesj 838 15 as as IN cord-000248-zueoyesj 838 16 a a DT cord-000248-zueoyesj 838 17 result result NN cord-000248-zueoyesj 838 18 of of IN cord-000248-zueoyesj 838 19 an an DT cord-000248-zueoyesj 838 20 analysis analysis NN cord-000248-zueoyesj 838 21 of of IN cord-000248-zueoyesj 838 22 over over IN cord-000248-zueoyesj 838 23 132,000 132,000 CD cord-000248-zueoyesj 838 24 Roche Roche NNP cord-000248-zueoyesj 838 25 454 454 CD cord-000248-zueoyesj 838 26 highconfidence highconfidence NN cord-000248-zueoyesj 838 27 deep deep JJ cord-000248-zueoyesj 838 28 sequencing sequencing NN cord-000248-zueoyesj 838 29 reads read VBZ cord-000248-zueoyesj 838 30 [ [ -LRB- cord-000248-zueoyesj 838 31 749 749 CD cord-000248-zueoyesj 838 32 ] ] -RRB- cord-000248-zueoyesj 838 33 . . . cord-000248-zueoyesj 839 1 An an DT cord-000248-zueoyesj 839 2 international international JJ cord-000248-zueoyesj 839 3 team team NN cord-000248-zueoyesj 839 4 , , , cord-000248-zueoyesj 839 5 searching search VBG cord-000248-zueoyesj 839 6 on on IN cord-000248-zueoyesj 839 7 thousands thousand NNS cord-000248-zueoyesj 839 8 of of IN cord-000248-zueoyesj 839 9 novel novel JJ cord-000248-zueoyesj 839 10 non non JJ cord-000248-zueoyesj 839 11 - - JJ cord-000248-zueoyesj 839 12 coding coding JJ cord-000248-zueoyesj 839 13 transcripts transcript NNS cord-000248-zueoyesj 839 14 of of IN cord-000248-zueoyesj 839 15 the the DT cord-000248-zueoyesj 839 16 breast breast NN cord-000248-zueoyesj 839 17 cancer cancer NN cord-000248-zueoyesj 839 18 transcriptome transcriptome NN cord-000248-zueoyesj 839 19 , , , cord-000248-zueoyesj 839 20 has have VBZ cord-000248-zueoyesj 839 21 been be VBN cord-000248-zueoyesj 839 22 able able JJ cord-000248-zueoyesj 839 23 to to TO cord-000248-zueoyesj 839 24 identify identify VB cord-000248-zueoyesj 839 25 more more JJR cord-000248-zueoyesj 839 26 than than IN cord-000248-zueoyesj 839 27 three three CD cord-000248-zueoyesj 839 28 hundred hundred CD cord-000248-zueoyesj 839 29 reads read VBZ cord-000248-zueoyesj 839 30 corresponding correspond VBG cord-000248-zueoyesj 839 31 to to IN cord-000248-zueoyesj 839 32 MALAT1 MALAT1 NNP cord-000248-zueoyesj 839 33 [ [ -LRB- cord-000248-zueoyesj 839 34 749 749 CD cord-000248-zueoyesj 839 35 ] ] -RRB- cord-000248-zueoyesj 839 36 . . . cord-000248-zueoyesj 840 1 This this DT cord-000248-zueoyesj 840 2 is be VBZ cord-000248-zueoyesj 840 3 a a DT cord-000248-zueoyesj 840 4 noncoding noncoding JJ cord-000248-zueoyesj 840 5 RNA rna NN cord-000248-zueoyesj 840 6 which which WDT cord-000248-zueoyesj 840 7 was be VBD cord-000248-zueoyesj 840 8 identified identify VBN cord-000248-zueoyesj 840 9 in in IN cord-000248-zueoyesj 840 10 2003 2003 CD cord-000248-zueoyesj 840 11 in in IN cord-000248-zueoyesj 840 12 non non JJ cord-000248-zueoyesj 840 13 - - JJ cord-000248-zueoyesj 840 14 small small JJ cord-000248-zueoyesj 840 15 cell cell NN cord-000248-zueoyesj 840 16 lung lung NN cord-000248-zueoyesj 840 17 cancer cancer NN cord-000248-zueoyesj 840 18 , , , cord-000248-zueoyesj 840 19 was be VBD cord-000248-zueoyesj 840 20 shown show VBN cord-000248-zueoyesj 840 21 to to TO cord-000248-zueoyesj 840 22 be be VB cord-000248-zueoyesj 840 23 highly highly RB cord-000248-zueoyesj 840 24 expressed express VBN cord-000248-zueoyesj 840 25 ( ( -LRB- cord-000248-zueoyesj 840 26 relative relative JJ cord-000248-zueoyesj 840 27 to to IN cord-000248-zueoyesj 840 28 GAPDH GAPDH NNP cord-000248-zueoyesj 840 29 ) ) -RRB- cord-000248-zueoyesj 840 30 in in IN cord-000248-zueoyesj 840 31 lung lung NN cord-000248-zueoyesj 840 32 , , , cord-000248-zueoyesj 840 33 pancreas pancreas NN cord-000248-zueoyesj 840 34 and and CC cord-000248-zueoyesj 840 35 prostate prostate NN cord-000248-zueoyesj 840 36 , , , cord-000248-zueoyesj 840 37 but but CC cord-000248-zueoyesj 840 38 not not RB cord-000248-zueoyesj 840 39 in in IN cord-000248-zueoyesj 840 40 other other JJ cord-000248-zueoyesj 840 41 tissues tissue NNS cord-000248-zueoyesj 840 42 including include VBG cord-000248-zueoyesj 840 43 muscle muscle NN cord-000248-zueoyesj 840 44 , , , cord-000248-zueoyesj 840 45 skin skin NN cord-000248-zueoyesj 840 46 , , , cord-000248-zueoyesj 840 47 stomach stomach NN cord-000248-zueoyesj 840 48 , , , cord-000248-zueoyesj 840 49 bone bone NN cord-000248-zueoyesj 840 50 marrow marrow NN cord-000248-zueoyesj 840 51 , , , cord-000248-zueoyesj 840 52 saliva saliva NN cord-000248-zueoyesj 840 53 , , , cord-000248-zueoyesj 840 54 thyroid thyroid NN cord-000248-zueoyesj 840 55 and and CC cord-000248-zueoyesj 840 56 adrenal adrenal JJ cord-000248-zueoyesj 840 57 glands gland NNS cord-000248-zueoyesj 840 58 , , , cord-000248-zueoyesj 840 59 uterus uterus NN cord-000248-zueoyesj 840 60 and and CC cord-000248-zueoyesj 840 61 fetal fetal JJ cord-000248-zueoyesj 840 62 liver liver NN cord-000248-zueoyesj 840 63 [ [ -LRB- cord-000248-zueoyesj 840 64 758 758 CD cord-000248-zueoyesj 840 65 ] ] -RRB- cord-000248-zueoyesj 840 66 . . . cord-000248-zueoyesj 841 1 MALAT-1 MALAT-1 NNS cord-000248-zueoyesj 841 2 , , , cord-000248-zueoyesj 841 3 also also RB cord-000248-zueoyesj 841 4 known know VBN cord-000248-zueoyesj 841 5 as as IN cord-000248-zueoyesj 841 6 NEAT2 NEAT2 NNS cord-000248-zueoyesj 841 7 , , , cord-000248-zueoyesj 841 8 is be VBZ cord-000248-zueoyesj 841 9 considered consider VBN cord-000248-zueoyesj 841 10 to to TO cord-000248-zueoyesj 841 11 be be VB cord-000248-zueoyesj 841 12 ' ' `` cord-000248-zueoyesj 841 13 ' ' '' cord-000248-zueoyesj 841 14 extraordinarily extraordinarily RB cord-000248-zueoyesj 841 15 conseved conseved JJ cord-000248-zueoyesj 841 16 for for IN cord-000248-zueoyesj 841 17 a a DT cord-000248-zueoyesj 841 18 noncoding noncoding JJ cord-000248-zueoyesj 841 19 RNA RNA NNP cord-000248-zueoyesj 841 20 , , , cord-000248-zueoyesj 841 21 more more RBR cord-000248-zueoyesj 841 22 so so RB cord-000248-zueoyesj 841 23 than than IN cord-000248-zueoyesj 841 24 even even RB cord-000248-zueoyesj 841 25 XIST XIST NNP cord-000248-zueoyesj 841 26 ' ' '' cord-000248-zueoyesj 841 27 ' ' '' cord-000248-zueoyesj 841 28 [ [ -LRB- cord-000248-zueoyesj 841 29 754 754 CD cord-000248-zueoyesj 841 30 ] ] -RRB- cord-000248-zueoyesj 841 31 . . . cord-000248-zueoyesj 842 1 Our -PRON- PRP$ cord-000248-zueoyesj 842 2 results result NNS cord-000248-zueoyesj 842 3 indicate indicate VBP cord-000248-zueoyesj 842 4 that that IN cord-000248-zueoyesj 842 5 the the DT cord-000248-zueoyesj 842 6 reduction reduction NN cord-000248-zueoyesj 842 7 of of IN cord-000248-zueoyesj 842 8 expression expression NN cord-000248-zueoyesj 842 9 of of IN cord-000248-zueoyesj 842 10 some some DT cord-000248-zueoyesj 842 11 non non JJ cord-000248-zueoyesj 842 12 - - JJ cord-000248-zueoyesj 842 13 coding coding JJ cord-000248-zueoyesj 842 14 RNAs rna NNS cord-000248-zueoyesj 842 15 , , , cord-000248-zueoyesj 842 16 in in IN cord-000248-zueoyesj 842 17 particular particular JJ cord-000248-zueoyesj 842 18 of of IN cord-000248-zueoyesj 842 19 MALAT-1 MALAT-1 NNS cord-000248-zueoyesj 842 20 , , , cord-000248-zueoyesj 842 21 and and CC cord-000248-zueoyesj 842 22 SNORA60 SNORA60 NNP cord-000248-zueoyesj 842 23 with with IN cord-000248-zueoyesj 842 24 respect respect NN cord-000248-zueoyesj 842 25 to to IN cord-000248-zueoyesj 842 26 their -PRON- PRP$ cord-000248-zueoyesj 842 27 normal normal JJ cord-000248-zueoyesj 842 28 expression expression NN cord-000248-zueoyesj 842 29 in in IN cord-000248-zueoyesj 842 30 prostate prostate NN cord-000248-zueoyesj 842 31 , , , cord-000248-zueoyesj 842 32 as as RB cord-000248-zueoyesj 842 33 well well RB cord-000248-zueoyesj 842 34 as as IN cord-000248-zueoyesj 842 35 the the DT cord-000248-zueoyesj 842 36 upregulation upregulation NN cord-000248-zueoyesj 842 37 of of IN cord-000248-zueoyesj 842 38 SNHG8 snhg8 NN cord-000248-zueoyesj 843 1 and and CC cord-000248-zueoyesj 843 2 SNHG1 SNHG1 NNP cord-000248-zueoyesj 843 3 should should MD cord-000248-zueoyesj 843 4 be be VB cord-000248-zueoyesj 843 5 monitored monitor VBN cord-000248-zueoyesj 843 6 as as IN cord-000248-zueoyesj 843 7 useful useful JJ cord-000248-zueoyesj 843 8 biomarkers biomarker NNS cord-000248-zueoyesj 843 9 to to TO cord-000248-zueoyesj 843 10 track track VB cord-000248-zueoyesj 843 11 disease disease NN cord-000248-zueoyesj 843 12 progression progression NN cord-000248-zueoyesj 843 13 . . . cord-000248-zueoyesj 844 1 We -PRON- PRP cord-000248-zueoyesj 844 2 will will MD cord-000248-zueoyesj 844 3 now now RB cord-000248-zueoyesj 844 4 address address VB cord-000248-zueoyesj 844 5 another another DT cord-000248-zueoyesj 844 6 non non JJ cord-000248-zueoyesj 844 7 - - JJ cord-000248-zueoyesj 844 8 coding coding JJ cord-000248-zueoyesj 844 9 RNA RNA NNP cord-000248-zueoyesj 844 10 called call VBN cord-000248-zueoyesj 844 11 NEAT1 neat1 NN cord-000248-zueoyesj 844 12 which which WDT cord-000248-zueoyesj 844 13 , , , cord-000248-zueoyesj 844 14 like like IN cord-000248-zueoyesj 844 15 NEAT2 NEAT2 NNS cord-000248-zueoyesj 844 16 , , , cord-000248-zueoyesj 844 17 is be VBZ cord-000248-zueoyesj 844 18 also also RB cord-000248-zueoyesj 844 19 conserved conserve VBN cord-000248-zueoyesj 844 20 in in IN cord-000248-zueoyesj 844 21 the the DT cord-000248-zueoyesj 844 22 mammalian mammalian JJ cord-000248-zueoyesj 844 23 lingeage lingeage NN cord-000248-zueoyesj 844 24 . . . cord-000248-zueoyesj 845 1 Before before IN cord-000248-zueoyesj 845 2 we -PRON- PRP cord-000248-zueoyesj 845 3 move move VBP cord-000248-zueoyesj 845 4 onto onto IN cord-000248-zueoyesj 845 5 NEAT1 neat1 NN cord-000248-zueoyesj 845 6 , , , cord-000248-zueoyesj 845 7 we -PRON- PRP cord-000248-zueoyesj 845 8 will will MD cord-000248-zueoyesj 845 9 first first RB cord-000248-zueoyesj 845 10 recall recall VB cord-000248-zueoyesj 845 11 a a DT cord-000248-zueoyesj 845 12 previous previous JJ cord-000248-zueoyesj 845 13 result result NN cord-000248-zueoyesj 845 14 . . . cord-000248-zueoyesj 846 1 We -PRON- PRP cord-000248-zueoyesj 846 2 have have VBP cord-000248-zueoyesj 846 3 noted note VBN cord-000248-zueoyesj 846 4 before before IN cord-000248-zueoyesj 846 5 the the DT cord-000248-zueoyesj 846 6 conspiquous conspiquous JJ cord-000248-zueoyesj 846 7 position position NN cord-000248-zueoyesj 846 8 of of IN cord-000248-zueoyesj 846 9 SFPQ SFPQ NNP cord-000248-zueoyesj 846 10 / / SYM cord-000248-zueoyesj 846 11 PSF PSF NNP cord-000248-zueoyesj 846 12 ( ( -LRB- cord-000248-zueoyesj 846 13 Polypyrimidine polypyrimidine JJ cord-000248-zueoyesj 846 14 tract tract NN cord-000248-zueoyesj 846 15 - - HYPH cord-000248-zueoyesj 846 16 binding bind VBG cord-000248-zueoyesj 846 17 protein protein NN cord-000248-zueoyesj 846 18 - - HYPH cord-000248-zueoyesj 846 19 associated associate VBN cord-000248-zueoyesj 846 20 splicing splicing NN cord-000248-zueoyesj 846 21 factor factor NN cord-000248-zueoyesj 846 22 ) ) -RRB- cord-000248-zueoyesj 846 23 in in IN cord-000248-zueoyesj 846 24 Figure Figure NNP cord-000248-zueoyesj 846 25 16 16 CD cord-000248-zueoyesj 846 26 . . . cord-000248-zueoyesj 847 1 The the DT cord-000248-zueoyesj 847 2 expression expression NN cord-000248-zueoyesj 847 3 of of IN cord-000248-zueoyesj 847 4 a a DT cord-000248-zueoyesj 847 5 probe probe NN cord-000248-zueoyesj 847 6 for for IN cord-000248-zueoyesj 847 7 SPQF SPQF NNP cord-000248-zueoyesj 847 8 has have VBZ cord-000248-zueoyesj 847 9 the the DT cord-000248-zueoyesj 847 10 highest high JJS cord-000248-zueoyesj 847 11 correlation correlation NN cord-000248-zueoyesj 847 12 with with IN cord-000248-zueoyesj 847 13 the the DT cord-000248-zueoyesj 847 14 values value NNS cord-000248-zueoyesj 847 15 of of IN cord-000248-zueoyesj 847 16 the the DT cord-000248-zueoyesj 847 17 Normalized Normalized NNP cord-000248-zueoyesj 847 18 Shannon Shannon NNP cord-000248-zueoyesj 847 19 Entropy Entropy NNP cord-000248-zueoyesj 847 20 . . . cord-000248-zueoyesj 848 1 We -PRON- PRP cord-000248-zueoyesj 848 2 highlighted highlight VBD cord-000248-zueoyesj 848 3 before before IN cord-000248-zueoyesj 848 4 that that DT cord-000248-zueoyesj 848 5 SFPQ SFPQ NNP cord-000248-zueoyesj 848 6 / / SYM cord-000248-zueoyesj 848 7 PSF PSF NNP cord-000248-zueoyesj 848 8 is be VBZ cord-000248-zueoyesj 848 9 a a DT cord-000248-zueoyesj 848 10 putative putative JJ cord-000248-zueoyesj 848 11 regulator regulator NN cord-000248-zueoyesj 848 12 of of IN cord-000248-zueoyesj 848 13 growth growth NN cord-000248-zueoyesj 848 14 factor factor NN cord-000248-zueoyesj 848 15 - - HYPH cord-000248-zueoyesj 848 16 stimulated stimulate VBN cord-000248-zueoyesj 848 17 gene gene NN cord-000248-zueoyesj 848 18 expression expression NN cord-000248-zueoyesj 848 19 [ [ -LRB- cord-000248-zueoyesj 848 20 498 498 CD cord-000248-zueoyesj 848 21 ] ] -RRB- cord-000248-zueoyesj 848 22 . . . cord-000248-zueoyesj 849 1 The the DT cord-000248-zueoyesj 849 2 loss loss NN cord-000248-zueoyesj 849 3 of of IN cord-000248-zueoyesj 849 4 SFPQ SFPQ NNP cord-000248-zueoyesj 849 5 expression expression NN cord-000248-zueoyesj 849 6 during during IN cord-000248-zueoyesj 849 7 the the DT cord-000248-zueoyesj 849 8 progression progression NN cord-000248-zueoyesj 849 9 of of IN cord-000248-zueoyesj 849 10 prostate prostate NN cord-000248-zueoyesj 849 11 cancer cancer NN cord-000248-zueoyesj 849 12 may may MD cord-000248-zueoyesj 849 13 be be VB cord-000248-zueoyesj 849 14 an an DT cord-000248-zueoyesj 849 15 important important JJ cord-000248-zueoyesj 849 16 key key NN cord-000248-zueoyesj 849 17 to to TO cord-000248-zueoyesj 849 18 understand understand VB cord-000248-zueoyesj 849 19 this this DT cord-000248-zueoyesj 849 20 disease disease NN cord-000248-zueoyesj 849 21 or or CC cord-000248-zueoyesj 849 22 one one CD cord-000248-zueoyesj 849 23 of of IN cord-000248-zueoyesj 849 24 its -PRON- PRP$ cord-000248-zueoyesj 849 25 subtypes subtype NNS cord-000248-zueoyesj 849 26 . . . cord-000248-zueoyesj 850 1 We -PRON- PRP cord-000248-zueoyesj 850 2 have have VBP cord-000248-zueoyesj 850 3 also also RB cord-000248-zueoyesj 850 4 mentioned mention VBN cord-000248-zueoyesj 850 5 that that IN cord-000248-zueoyesj 850 6 the the DT cord-000248-zueoyesj 850 7 AR AR NNP cord-000248-zueoyesj 850 8 / / SYM cord-000248-zueoyesj 850 9 PSF PSF NNP cord-000248-zueoyesj 850 10 complex complex NN cord-000248-zueoyesj 850 11 interacts interact VBZ cord-000248-zueoyesj 850 12 with with IN cord-000248-zueoyesj 850 13 the the DT cord-000248-zueoyesj 850 14 PSA PSA NNP cord-000248-zueoyesj 850 15 gene gene NN cord-000248-zueoyesj 850 16 ( ( -LRB- cord-000248-zueoyesj 850 17 perhaps perhaps RB cord-000248-zueoyesj 850 18 the the DT cord-000248-zueoyesj 850 19 most most RBS cord-000248-zueoyesj 850 20 well well RB cord-000248-zueoyesj 850 21 - - HYPH cord-000248-zueoyesj 850 22 established establish VBN cord-000248-zueoyesj 850 23 prostate prostate NN cord-000248-zueoyesj 850 24 cancer cancer NN cord-000248-zueoyesj 850 25 biomarker biomarker NN cord-000248-zueoyesj 850 26 ) ) -RRB- cord-000248-zueoyesj 850 27 and and CC cord-000248-zueoyesj 850 28 that that IN cord-000248-zueoyesj 850 29 SFPQ SFPQ NNP cord-000248-zueoyesj 850 30 / / SYM cord-000248-zueoyesj 850 31 PSF PSF NNP cord-000248-zueoyesj 850 32 inhibits inhibit VBZ cord-000248-zueoyesj 850 33 AR AR NNP cord-000248-zueoyesj 850 34 transcriptional transcriptional JJ cord-000248-zueoyesj 850 35 activity activity NN cord-000248-zueoyesj 850 36 [ [ -LRB- cord-000248-zueoyesj 850 37 499 499 CD cord-000248-zueoyesj 850 38 ] ] -RRB- cord-000248-zueoyesj 850 39 . . . cord-000248-zueoyesj 851 1 Kuwahara Kuwahara NNP cord-000248-zueoyesj 851 2 et et IN cord-000248-zueoyesj 851 3 al al NNP cord-000248-zueoyesj 851 4 . . . cord-000248-zueoyesj 852 1 showed show VBD cord-000248-zueoyesj 852 2 that that IN cord-000248-zueoyesj 852 3 SFPQ SFPQ NNP cord-000248-zueoyesj 852 4 together together RB cord-000248-zueoyesj 852 5 with with IN cord-000248-zueoyesj 852 6 NONO NONO NNP cord-000248-zueoyesj 852 7 ( ( -LRB- cord-000248-zueoyesj 852 8 Non Non NNP cord-000248-zueoyesj 852 9 - - JJ cord-000248-zueoyesj 852 10 POU pou JJ cord-000248-zueoyesj 852 11 - - HYPH cord-000248-zueoyesj 852 12 domain domain NN cord-000248-zueoyesj 852 13 - - HYPH cord-000248-zueoyesj 852 14 containing contain VBG cord-000248-zueoyesj 852 15 , , , cord-000248-zueoyesj 852 16 octamer octamer NNP cord-000248-zueoyesj 852 17 binding bind VBG cord-000248-zueoyesj 852 18 protein protein NN cord-000248-zueoyesj 852 19 ) ) -RRB- cord-000248-zueoyesj 852 20 and and CC cord-000248-zueoyesj 852 21 PSPC1 PSPC1 NNP cord-000248-zueoyesj 853 1 ( ( -LRB- cord-000248-zueoyesj 853 2 Paraspeckle Paraspeckle NNP cord-000248-zueoyesj 853 3 protein protein NN cord-000248-zueoyesj 853 4 1 1 CD cord-000248-zueoyesj 853 5 alpha alpha NN cord-000248-zueoyesj 853 6 isoform isoform NN cord-000248-zueoyesj 853 7 , , , cord-000248-zueoyesj 853 8 formerly formerly RB cord-000248-zueoyesj 853 9 known know VBN cord-000248-zueoyesj 853 10 as as IN cord-000248-zueoyesj 853 11 PSP1 PSP1 NNP cord-000248-zueoyesj 853 12 ) ) -RRB- cord-000248-zueoyesj 853 13 are be VBP cord-000248-zueoyesj 853 14 expressed express VBN cord-000248-zueoyesj 853 15 in in IN cord-000248-zueoyesj 853 16 mouse mouse NN cord-000248-zueoyesj 853 17 Sertoli Sertoli NNP cord-000248-zueoyesj 853 18 cells cell NNS cord-000248-zueoyesj 853 19 of of IN cord-000248-zueoyesj 853 20 the the DT cord-000248-zueoyesj 853 21 testis testis NN cord-000248-zueoyesj 853 22 and and CC cord-000248-zueoyesj 853 23 form form NN cord-000248-zueoyesj 853 24 complexes complex NNS cord-000248-zueoyesj 853 25 that that WDT cord-000248-zueoyesj 853 26 function function VBP cord-000248-zueoyesj 853 27 as as IN cord-000248-zueoyesj 853 28 coregulators coregulator NNS cord-000248-zueoyesj 853 29 of of IN cord-000248-zueoyesj 853 30 androgen androgen NN cord-000248-zueoyesj 853 31 receptormediated receptormediated JJ cord-000248-zueoyesj 853 32 transcription transcription NN cord-000248-zueoyesj 853 33 [ [ -LRB- cord-000248-zueoyesj 853 34 500 500 CD cord-000248-zueoyesj 853 35 ] ] -RRB- cord-000248-zueoyesj 853 36 . . . cord-000248-zueoyesj 854 1 While while IN cord-000248-zueoyesj 854 2 new new JJ cord-000248-zueoyesj 854 3 research research NN cord-000248-zueoyesj 854 4 results result NNS cord-000248-zueoyesj 854 5 [ [ -LRB- cord-000248-zueoyesj 854 6 759 759 CD cord-000248-zueoyesj 854 7 ] ] -RRB- cord-000248-zueoyesj 854 8 link link VBP cord-000248-zueoyesj 854 9 SFPQ SFPQ NNP cord-000248-zueoyesj 854 10 and and CC cord-000248-zueoyesj 854 11 NONO NONO NNP cord-000248-zueoyesj 854 12 / / SYM cord-000248-zueoyesj 854 13 P54NRB P54NRB VBN cord-000248-zueoyesj 854 14 with with IN cord-000248-zueoyesj 854 15 the the DT cord-000248-zueoyesj 854 16 RAD51 RAD51 NNP cord-000248-zueoyesj 854 17 family family NN cord-000248-zueoyesj 854 18 of of IN cord-000248-zueoyesj 854 19 proteins protein NNS cord-000248-zueoyesj 854 20 ( ( -LRB- cord-000248-zueoyesj 854 21 largely largely RB cord-000248-zueoyesj 854 22 regarded regard VBN cord-000248-zueoyesj 854 23 as as IN cord-000248-zueoyesj 854 24 another another DT cord-000248-zueoyesj 854 25 key key JJ cord-000248-zueoyesj 854 26 protector protector NN cord-000248-zueoyesj 854 27 of of IN cord-000248-zueoyesj 854 28 chromosome chromosome NN cord-000248-zueoyesj 854 29 integrity integrity NN cord-000248-zueoyesj 854 30 as as IN cord-000248-zueoyesj 854 31 being be VBG cord-000248-zueoyesj 854 32 involved involve VBN cord-000248-zueoyesj 854 33 in in IN cord-000248-zueoyesj 854 34 homologous homologous JJ cord-000248-zueoyesj 854 35 recombination recombination NN cord-000248-zueoyesj 854 36 DNA dna NN cord-000248-zueoyesj 854 37 repair repair NN cord-000248-zueoyesj 854 38 ) ) -RRB- cord-000248-zueoyesj 854 39 , , , cord-000248-zueoyesj 854 40 it -PRON- PRP cord-000248-zueoyesj 854 41 is be VBZ cord-000248-zueoyesj 854 42 perhaps perhaps RB cord-000248-zueoyesj 854 43 SFPQ SFPQ NNP cord-000248-zueoyesj 854 44 and and CC cord-000248-zueoyesj 854 45 NONO NONO NNP cord-000248-zueoyesj 854 46 's 's POS cord-000248-zueoyesj 854 47 co co NN cord-000248-zueoyesj 854 48 - - NN cord-000248-zueoyesj 854 49 localization localization NN cord-000248-zueoyesj 854 50 in in IN cord-000248-zueoyesj 854 51 paraspeckles paraspeckle NNS cord-000248-zueoyesj 854 52 that that WDT cord-000248-zueoyesj 854 53 make make VBP cord-000248-zueoyesj 854 54 this this DT cord-000248-zueoyesj 854 55 group group NN cord-000248-zueoyesj 854 56 also also RB cord-000248-zueoyesj 854 57 remarkable remarkable JJ cord-000248-zueoyesj 854 58 [ [ -LRB- cord-000248-zueoyesj 854 59 760 760 CD cord-000248-zueoyesj 854 60 ] ] -RRB- cord-000248-zueoyesj 854 61 . . . cord-000248-zueoyesj 855 1 Paraspeckles Paraspeckles NNP cord-000248-zueoyesj 855 2 [ [ -LRB- cord-000248-zueoyesj 855 3 760 760 CD cord-000248-zueoyesj 855 4 , , , cord-000248-zueoyesj 855 5 761 761 CD cord-000248-zueoyesj 855 6 , , , cord-000248-zueoyesj 855 7 762 762 CD cord-000248-zueoyesj 855 8 , , , cord-000248-zueoyesj 855 9 763 763 CD cord-000248-zueoyesj 855 10 , , , cord-000248-zueoyesj 855 11 764 764 CD cord-000248-zueoyesj 855 12 , , , cord-000248-zueoyesj 855 13 765 765 CD cord-000248-zueoyesj 855 14 , , , cord-000248-zueoyesj 855 15 766 766 CD cord-000248-zueoyesj 855 16 , , , cord-000248-zueoyesj 855 17 767 767 CD cord-000248-zueoyesj 855 18 , , , cord-000248-zueoyesj 855 19 768 768 CD cord-000248-zueoyesj 855 20 , , , cord-000248-zueoyesj 855 21 769 769 CD cord-000248-zueoyesj 855 22 , , , cord-000248-zueoyesj 855 23 770 770 CD cord-000248-zueoyesj 855 24 , , , cord-000248-zueoyesj 855 25 771 771 CD cord-000248-zueoyesj 855 26 , , , cord-000248-zueoyesj 855 27 772 772 CD cord-000248-zueoyesj 855 28 , , , cord-000248-zueoyesj 855 29 773 773 CD cord-000248-zueoyesj 855 30 , , , cord-000248-zueoyesj 855 31 774 774 CD cord-000248-zueoyesj 855 32 , , , cord-000248-zueoyesj 855 33 775 775 CD cord-000248-zueoyesj 855 34 , , , cord-000248-zueoyesj 855 35 776 776 CD cord-000248-zueoyesj 855 36 , , , cord-000248-zueoyesj 855 37 777 777 CD cord-000248-zueoyesj 855 38 ] ] -RRB- cord-000248-zueoyesj 855 39 are be VBP cord-000248-zueoyesj 855 40 a a DT cord-000248-zueoyesj 855 41 novel novel JJ cord-000248-zueoyesj 855 42 nuclear nuclear JJ cord-000248-zueoyesj 855 43 compartment compartment NN cord-000248-zueoyesj 855 44 , , , cord-000248-zueoyesj 855 45 of of IN cord-000248-zueoyesj 855 46 approximately approximately RB cord-000248-zueoyesj 855 47 0.2 0.2 CD cord-000248-zueoyesj 855 48 - - SYM cord-000248-zueoyesj 855 49 1 1 CD cord-000248-zueoyesj 855 50 mm mm NN cord-000248-zueoyesj 855 51 in in IN cord-000248-zueoyesj 855 52 size size NN cord-000248-zueoyesj 855 53 , , , cord-000248-zueoyesj 855 54 discovered discover VBN cord-000248-zueoyesj 855 55 in in IN cord-000248-zueoyesj 855 56 2002 2002 CD cord-000248-zueoyesj 855 57 , , , cord-000248-zueoyesj 855 58 by by IN cord-000248-zueoyesj 855 59 Fox Fox NNP cord-000248-zueoyesj 855 60 et et FW cord-000248-zueoyesj 855 61 al al NNP cord-000248-zueoyesj 855 62 . . . cord-000248-zueoyesj 856 1 in in IN cord-000248-zueoyesj 856 2 Dundee Dundee NNP cord-000248-zueoyesj 856 3 Scotland Scotland NNP cord-000248-zueoyesj 856 4 , , , cord-000248-zueoyesj 856 5 following follow VBG cord-000248-zueoyesj 856 6 the the DT cord-000248-zueoyesj 856 7 identification identification NN cord-000248-zueoyesj 856 8 of of IN cord-000248-zueoyesj 856 9 the the DT cord-000248-zueoyesj 856 10 protein protein NN cord-000248-zueoyesj 856 11 PSPC1 PSPC1 NNP cord-000248-zueoyesj 856 12 ( ( -LRB- cord-000248-zueoyesj 856 13 AF448795 af448795 JJ cord-000248-zueoyesj 856 14 ) ) -RRB- cord-000248-zueoyesj 856 15 in in IN cord-000248-zueoyesj 856 16 the the DT cord-000248-zueoyesj 856 17 nucleolar nucleolar NNP cord-000248-zueoyesj 856 18 proteomics proteomic NNS cord-000248-zueoyesj 856 19 project project NN cord-000248-zueoyesj 856 20 at at IN cord-000248-zueoyesj 856 21 Lamond Lamond NNP cord-000248-zueoyesj 856 22 's 's POS cord-000248-zueoyesj 856 23 lab lab NN cord-000248-zueoyesj 856 24 which which WDT cord-000248-zueoyesj 856 25 is be VBZ cord-000248-zueoyesj 856 26 described describe VBN cord-000248-zueoyesj 856 27 well well RB cord-000248-zueoyesj 856 28 by by IN cord-000248-zueoyesj 856 29 Fox Fox NNP cord-000248-zueoyesj 856 30 et et FW cord-000248-zueoyesj 856 31 al al NNP cord-000248-zueoyesj 856 32 . . . cord-000248-zueoyesj 857 1 [ [ -LRB- cord-000248-zueoyesj 857 2 777 777 CD cord-000248-zueoyesj 857 3 ] ] -RRB- cord-000248-zueoyesj 857 4 . . . cord-000248-zueoyesj 858 1 Three three CD cord-000248-zueoyesj 858 2 years year NNS cord-000248-zueoyesj 858 3 later later RB cord-000248-zueoyesj 858 4 , , , cord-000248-zueoyesj 858 5 Fox Fox NNP cord-000248-zueoyesj 858 6 , , , cord-000248-zueoyesj 858 7 Bond Bond NNP cord-000248-zueoyesj 858 8 and and CC cord-000248-zueoyesj 858 9 Lamond Lamond NNP cord-000248-zueoyesj 858 10 showed show VBD cord-000248-zueoyesj 858 11 that that IN cord-000248-zueoyesj 858 12 NONO NONO NNP cord-000248-zueoyesj 858 13 and and CC cord-000248-zueoyesj 858 14 PSPC1 PSPC1 NNP cord-000248-zueoyesj 858 15 form form VBP cord-000248-zueoyesj 858 16 a a DT cord-000248-zueoyesj 858 17 heterodimer heterodimer NN cord-000248-zueoyesj 858 18 that that WDT cord-000248-zueoyesj 858 19 localizes localize VBZ cord-000248-zueoyesj 858 20 to to IN cord-000248-zueoyesj 858 21 paraspeckles paraspeckle NNS cord-000248-zueoyesj 858 22 in in IN cord-000248-zueoyesj 858 23 an an DT cord-000248-zueoyesj 858 24 RNA RNA NNP cord-000248-zueoyesj 858 25 - - HYPH cord-000248-zueoyesj 858 26 dependent dependent JJ cord-000248-zueoyesj 858 27 manner manner NN cord-000248-zueoyesj 858 28 [ [ -LRB- cord-000248-zueoyesj 858 29 773 773 CD cord-000248-zueoyesj 858 30 ] ] -RRB- cord-000248-zueoyesj 858 31 . . . cord-000248-zueoyesj 859 1 Paraspeckles paraspeckle NNS cord-000248-zueoyesj 859 2 are be VBP cord-000248-zueoyesj 859 3 dynamic dynamic JJ cord-000248-zueoyesj 859 4 structures structure NNS cord-000248-zueoyesj 859 5 , , , cord-000248-zueoyesj 859 6 observed observe VBN cord-000248-zueoyesj 859 7 in in IN cord-000248-zueoyesj 859 8 numbers number NNS cord-000248-zueoyesj 859 9 that that WDT cord-000248-zueoyesj 859 10 vary vary VBP cord-000248-zueoyesj 859 11 between between IN cord-000248-zueoyesj 859 12 10 10 CD cord-000248-zueoyesj 859 13 and and CC cord-000248-zueoyesj 859 14 20 20 CD cord-000248-zueoyesj 859 15 , , , cord-000248-zueoyesj 859 16 that that WDT cord-000248-zueoyesj 859 17 seem seem VBP cord-000248-zueoyesj 859 18 to to TO cord-000248-zueoyesj 859 19 control control VB cord-000248-zueoyesj 859 20 gene gene NN cord-000248-zueoyesj 859 21 expression expression NN cord-000248-zueoyesj 859 22 via via IN cord-000248-zueoyesj 859 23 retention retention NN cord-000248-zueoyesj 859 24 of of IN cord-000248-zueoyesj 859 25 RNA RNA NNP cord-000248-zueoyesj 859 26 in in IN cord-000248-zueoyesj 859 27 the the DT cord-000248-zueoyesj 859 28 nucleus nucleus NN cord-000248-zueoyesj 859 29 [ [ -LRB- cord-000248-zueoyesj 859 30 772 772 CD cord-000248-zueoyesj 859 31 ] ] -RRB- cord-000248-zueoyesj 859 32 . . . cord-000248-zueoyesj 860 1 A a DT cord-000248-zueoyesj 860 2 long long JJ cord-000248-zueoyesj 860 3 noncoding noncoding JJ cord-000248-zueoyesj 860 4 RNA RNA NNP cord-000248-zueoyesj 860 5 called call VBN cord-000248-zueoyesj 860 6 NEAT1 NEAT1 NNP cord-000248-zueoyesj 860 7 / / SYM cord-000248-zueoyesj 860 8 MEN men NN cord-000248-zueoyesj 860 9 epsilon epsilon NN cord-000248-zueoyesj 861 1 /beta /beta NFP cord-000248-zueoyesj 861 2 [ [ -LRB- cord-000248-zueoyesj 861 3 754 754 CD cord-000248-zueoyesj 861 4 , , , cord-000248-zueoyesj 861 5 760 760 CD cord-000248-zueoyesj 861 6 , , , cord-000248-zueoyesj 861 7 762 762 CD cord-000248-zueoyesj 861 8 , , , cord-000248-zueoyesj 861 9 764 764 CD cord-000248-zueoyesj 861 10 , , , cord-000248-zueoyesj 861 11 778 778 CD cord-000248-zueoyesj 861 12 ] ] -RRB- cord-000248-zueoyesj 861 13 , , , cord-000248-zueoyesj 861 14 that that WDT cord-000248-zueoyesj 861 15 colocalizes colocalizes RB cord-000248-zueoyesj 861 16 with with IN cord-000248-zueoyesj 861 17 paraspeckles paraspeckles NNP cord-000248-zueoyesj 861 18 , , , cord-000248-zueoyesj 861 19 seems seem VBZ cord-000248-zueoyesj 861 20 to to TO cord-000248-zueoyesj 861 21 be be VB cord-000248-zueoyesj 861 22 integral integral JJ cord-000248-zueoyesj 861 23 to to IN cord-000248-zueoyesj 861 24 their -PRON- PRP$ cord-000248-zueoyesj 861 25 structure structure NN cord-000248-zueoyesj 861 26 . . . cord-000248-zueoyesj 862 1 Depletion depletion NN cord-000248-zueoyesj 862 2 of of IN cord-000248-zueoyesj 862 3 NEAT1 NEAT1 NNP cord-000248-zueoyesj 862 4 erradicates erradicates NNP cord-000248-zueoyesj 862 5 paraspeckles paraspeckles NNP cord-000248-zueoyesj 862 6 and and CC cord-000248-zueoyesj 862 7 a a DT cord-000248-zueoyesj 862 8 biochemical biochemical JJ cord-000248-zueoyesj 862 9 analysis analysis NN cord-000248-zueoyesj 862 10 by by IN cord-000248-zueoyesj 862 11 Clemson Clemson NNP cord-000248-zueoyesj 862 12 et et NNP cord-000248-zueoyesj 862 13 al al NNP cord-000248-zueoyesj 862 14 indicates indicate VBZ cord-000248-zueoyesj 862 15 that that IN cord-000248-zueoyesj 862 16 the the DT cord-000248-zueoyesj 862 17 NEAT1 NEAT1 NNP cord-000248-zueoyesj 862 18 binds bind VBZ cord-000248-zueoyesj 862 19 with with IN cord-000248-zueoyesj 862 20 paraspeckle paraspeckle NN cord-000248-zueoyesj 862 21 proteins protein NNS cord-000248-zueoyesj 863 1 SFPQ SFPQ NNP cord-000248-zueoyesj 863 2 / / SYM cord-000248-zueoyesj 863 3 PSF PSF NNP cord-000248-zueoyesj 863 4 , , , cord-000248-zueoyesj 863 5 P54NRB P54NRB NNP cord-000248-zueoyesj 863 6 / / SYM cord-000248-zueoyesj 863 7 NONO NONO NNP cord-000248-zueoyesj 863 8 and and CC cord-000248-zueoyesj 863 9 PSPC1 PSPC1 NNS cord-000248-zueoyesj 863 10 . . . cord-000248-zueoyesj 864 1 NEAT1 NEAT1 NNP cord-000248-zueoyesj 864 2 is be VBZ cord-000248-zueoyesj 864 3 also also RB cord-000248-zueoyesj 864 4 known know VBN cord-000248-zueoyesj 864 5 as as IN cord-000248-zueoyesj 864 6 TncRNA TncRNA NNP cord-000248-zueoyesj 864 7 ( ( -LRB- cord-000248-zueoyesj 864 8 trophoblast trophoblast NN cord-000248-zueoyesj 864 9 - - HYPH cord-000248-zueoyesj 864 10 derived derive VBN cord-000248-zueoyesj 864 11 noncoding noncoding NNP cord-000248-zueoyesj 864 12 RNA RNA NNP cord-000248-zueoyesj 864 13 ) ) -RRB- cord-000248-zueoyesj 864 14 [ [ -LRB- cord-000248-zueoyesj 864 15 754 754 CD cord-000248-zueoyesj 864 16 , , , cord-000248-zueoyesj 864 17 779 779 CD cord-000248-zueoyesj 864 18 , , , cord-000248-zueoyesj 864 19 780 780 CD cord-000248-zueoyesj 864 20 , , , cord-000248-zueoyesj 864 21 781 781 CD cord-000248-zueoyesj 864 22 , , , cord-000248-zueoyesj 864 23 782 782 CD cord-000248-zueoyesj 864 24 , , , cord-000248-zueoyesj 864 25 783 783 CD cord-000248-zueoyesj 864 26 , , , cord-000248-zueoyesj 864 27 784 784 CD cord-000248-zueoyesj 864 28 , , , cord-000248-zueoyesj 864 29 785 785 CD cord-000248-zueoyesj 864 30 , , , cord-000248-zueoyesj 864 31 786 786 CD cord-000248-zueoyesj 864 32 ] ] -RRB- cord-000248-zueoyesj 864 33 and and CC cord-000248-zueoyesj 864 34 probes probe NNS cord-000248-zueoyesj 864 35 for for IN cord-000248-zueoyesj 864 36 TncRNA TncRNA NNS cord-000248-zueoyesj 864 37 exist exist VBP cord-000248-zueoyesj 864 38 on on IN cord-000248-zueoyesj 864 39 this this DT cord-000248-zueoyesj 864 40 dataset dataset NN cord-000248-zueoyesj 864 41 , , , cord-000248-zueoyesj 864 42 We -PRON- PRP cord-000248-zueoyesj 864 43 have have VBP cord-000248-zueoyesj 864 44 observed observe VBN cord-000248-zueoyesj 864 45 in in IN cord-000248-zueoyesj 864 46 True True NNP cord-000248-zueoyesj 864 47 et et NNP cord-000248-zueoyesj 864 48 al al NNP cord-000248-zueoyesj 864 49 . . NNP cord-000248-zueoyesj 864 50 's 's POS cord-000248-zueoyesj 864 51 dataset dataset NN cord-000248-zueoyesj 864 52 that that IN cord-000248-zueoyesj 864 53 there there EX cord-000248-zueoyesj 864 54 exists exist VBZ cord-000248-zueoyesj 864 55 a a DT cord-000248-zueoyesj 864 56 high high JJ cord-000248-zueoyesj 864 57 correlation correlation NN cord-000248-zueoyesj 864 58 between between IN cord-000248-zueoyesj 864 59 the the DT cord-000248-zueoyesj 864 60 Normalized Normalized NNP cord-000248-zueoyesj 864 61 Shannon Shannon NNP cord-000248-zueoyesj 864 62 Entropy Entropy NNP cord-000248-zueoyesj 864 63 with with IN cord-000248-zueoyesj 864 64 the the DT cord-000248-zueoyesj 864 65 expression expression NN cord-000248-zueoyesj 864 66 of of IN cord-000248-zueoyesj 864 67 SFPQ SFPQ NNP cord-000248-zueoyesj 864 68 / / SYM cord-000248-zueoyesj 864 69 PSF PSF NNP cord-000248-zueoyesj 864 70 , , , cord-000248-zueoyesj 864 71 P54NRB P54NRB NNP cord-000248-zueoyesj 864 72 / / SYM cord-000248-zueoyesj 864 73 NONO NONO NNP cord-000248-zueoyesj 864 74 , , , cord-000248-zueoyesj 864 75 and and CC cord-000248-zueoyesj 864 76 TncRNA TncRNA NNP cord-000248-zueoyesj 864 77 . . . cord-000248-zueoyesj 865 1 Overall overall RB cord-000248-zueoyesj 865 2 , , , cord-000248-zueoyesj 865 3 this this DT cord-000248-zueoyesj 865 4 implies imply VBZ cord-000248-zueoyesj 865 5 that that IN cord-000248-zueoyesj 865 6 the the DT cord-000248-zueoyesj 865 7 disruption disruption NN cord-000248-zueoyesj 865 8 of of IN cord-000248-zueoyesj 865 9 the the DT cord-000248-zueoyesj 865 10 function function NN cord-000248-zueoyesj 865 11 of of IN cord-000248-zueoyesj 865 12 the the DT cord-000248-zueoyesj 865 13 paraspeckles paraspeckle NNS cord-000248-zueoyesj 865 14 is be VBZ cord-000248-zueoyesj 865 15 correlated correlate VBN cord-000248-zueoyesj 865 16 with with IN cord-000248-zueoyesj 865 17 the the DT cord-000248-zueoyesj 865 18 increasing increase VBG cord-000248-zueoyesj 865 19 signs sign NNS cord-000248-zueoyesj 865 20 of of IN cord-000248-zueoyesj 865 21 deterioration deterioration NN cord-000248-zueoyesj 865 22 of of IN cord-000248-zueoyesj 865 23 normal normal JJ cord-000248-zueoyesj 865 24 transcriptomic transcriptomic JJ cord-000248-zueoyesj 865 25 state state NN cord-000248-zueoyesj 865 26 of of IN cord-000248-zueoyesj 865 27 the the DT cord-000248-zueoyesj 865 28 cells cell NNS cord-000248-zueoyesj 865 29 . . . cord-000248-zueoyesj 866 1 While while IN cord-000248-zueoyesj 866 2 a a DT cord-000248-zueoyesj 866 3 causal causal JJ cord-000248-zueoyesj 866 4 relationship relationship NN cord-000248-zueoyesj 866 5 still still RB cord-000248-zueoyesj 866 6 needs need VBZ cord-000248-zueoyesj 866 7 to to TO cord-000248-zueoyesj 866 8 be be VB cord-000248-zueoyesj 866 9 proved prove VBN cord-000248-zueoyesj 866 10 , , , cord-000248-zueoyesj 866 11 we -PRON- PRP cord-000248-zueoyesj 866 12 admire admire VBP cord-000248-zueoyesj 866 13 the the DT cord-000248-zueoyesj 866 14 mathematical mathematical JJ cord-000248-zueoyesj 866 15 elegance elegance NN cord-000248-zueoyesj 866 16 of of IN cord-000248-zueoyesj 866 17 the the DT cord-000248-zueoyesj 866 18 Normalized Normalized NNP cord-000248-zueoyesj 866 19 Shannon Shannon NNP cord-000248-zueoyesj 866 20 Entropy Entropy NNP cord-000248-zueoyesj 866 21 of of IN cord-000248-zueoyesj 866 22 the the DT cord-000248-zueoyesj 866 23 samples sample NNS cord-000248-zueoyesj 866 24 , , , cord-000248-zueoyesj 866 25 a a DT cord-000248-zueoyesj 866 26 global global JJ cord-000248-zueoyesj 866 27 measure measure NN cord-000248-zueoyesj 866 28 of of IN cord-000248-zueoyesj 866 29 the the DT cord-000248-zueoyesj 866 30 average average JJ cord-000248-zueoyesj 866 31 expected expect VBN cord-000248-zueoyesj 866 32 surprisal surprisal NN cord-000248-zueoyesj 866 33 of of IN cord-000248-zueoyesj 866 34 the the DT cord-000248-zueoyesj 866 35 transcriptome transcriptome NN cord-000248-zueoyesj 866 36 , , , cord-000248-zueoyesj 866 37 which which WDT cord-000248-zueoyesj 866 38 in in IN cord-000248-zueoyesj 866 39 turn turn NN cord-000248-zueoyesj 866 40 has have VBZ cord-000248-zueoyesj 866 41 lead lead VB cord-000248-zueoyesj 866 42 us -PRON- PRP cord-000248-zueoyesj 866 43 to to TO cord-000248-zueoyesj 866 44 consider consider VB cord-000248-zueoyesj 866 45 the the DT cord-000248-zueoyesj 866 46 dysfunction dysfunction NN cord-000248-zueoyesj 866 47 of of IN cord-000248-zueoyesj 866 48 the the DT cord-000248-zueoyesj 866 49 smallest small JJS cord-000248-zueoyesj 866 50 nuclear nuclear JJ cord-000248-zueoyesj 866 51 body body NN cord-000248-zueoyesj 866 52 as as IN cord-000248-zueoyesj 866 53 a a DT cord-000248-zueoyesj 866 54 putative putative JJ cord-000248-zueoyesj 866 55 biomarker biomarker NN cord-000248-zueoyesj 866 56 of of IN cord-000248-zueoyesj 866 57 disease disease NN cord-000248-zueoyesj 866 58 progression progression NN cord-000248-zueoyesj 866 59 . . . cord-000248-zueoyesj 867 1 The the DT cord-000248-zueoyesj 867 2 role role NN cord-000248-zueoyesj 867 3 of of IN cord-000248-zueoyesj 867 4 SFPQ SFPQ NNP cord-000248-zueoyesj 867 5 / / SYM cord-000248-zueoyesj 867 6 PSF PSF NNP cord-000248-zueoyesj 867 7 in in IN cord-000248-zueoyesj 867 8 the the DT cord-000248-zueoyesj 867 9 control control NN cord-000248-zueoyesj 867 10 of of IN cord-000248-zueoyesj 867 11 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 867 12 is be VBZ cord-000248-zueoyesj 867 13 under under IN cord-000248-zueoyesj 867 14 investigation investigation NN cord-000248-zueoyesj 867 15 [ [ -LRB- cord-000248-zueoyesj 867 16 787 787 CD cord-000248-zueoyesj 867 17 ] ] -RRB- cord-000248-zueoyesj 867 18 and and CC cord-000248-zueoyesj 867 19 the the DT cord-000248-zueoyesj 867 20 information information NN cord-000248-zueoyesj 867 21 coming come VBG cord-000248-zueoyesj 867 22 from from IN cord-000248-zueoyesj 867 23 these these DT cord-000248-zueoyesj 867 24 studies study NNS cord-000248-zueoyesj 867 25 would would MD cord-000248-zueoyesj 867 26 need need VB cord-000248-zueoyesj 867 27 to to TO cord-000248-zueoyesj 867 28 be be VB cord-000248-zueoyesj 867 29 integrated integrate VBN cord-000248-zueoyesj 867 30 with with IN cord-000248-zueoyesj 867 31 their -PRON- PRP$ cord-000248-zueoyesj 867 32 role role NN cord-000248-zueoyesj 867 33 , , , cord-000248-zueoyesj 867 34 together together RB cord-000248-zueoyesj 867 35 with with IN cord-000248-zueoyesj 867 36 P54NRB P54NRB NNP cord-000248-zueoyesj 867 37 / / SYM cord-000248-zueoyesj 867 38 NONO NONO NNP cord-000248-zueoyesj 867 39 and and CC cord-000248-zueoyesj 867 40 TncRNA TncRNA NNP cord-000248-zueoyesj 867 41 , , , cord-000248-zueoyesj 867 42 in in IN cord-000248-zueoyesj 867 43 paraspeckles paraspeckle NNS cord-000248-zueoyesj 867 44 if if IN cord-000248-zueoyesj 867 45 we -PRON- PRP cord-000248-zueoyesj 867 46 want want VBP cord-000248-zueoyesj 867 47 to to TO cord-000248-zueoyesj 867 48 achieve achieve VB cord-000248-zueoyesj 867 49 a a DT cord-000248-zueoyesj 867 50 better well JJR cord-000248-zueoyesj 867 51 understanding understanding NN cord-000248-zueoyesj 867 52 of of IN cord-000248-zueoyesj 867 53 these these DT cord-000248-zueoyesj 867 54 mechanisms mechanism NNS cord-000248-zueoyesj 867 55 . . . cord-000248-zueoyesj 868 1 In in IN cord-000248-zueoyesj 868 2 this this DT cord-000248-zueoyesj 868 3 contribution contribution NN cord-000248-zueoyesj 868 4 we -PRON- PRP cord-000248-zueoyesj 868 5 have have VBP cord-000248-zueoyesj 868 6 shown show VBN cord-000248-zueoyesj 868 7 that that IN cord-000248-zueoyesj 868 8 for for IN cord-000248-zueoyesj 868 9 the the DT cord-000248-zueoyesj 868 10 melanoma melanoma NN cord-000248-zueoyesj 868 11 and and CC cord-000248-zueoyesj 868 12 prostate prostate NN cord-000248-zueoyesj 868 13 cancer cancer NN cord-000248-zueoyesj 868 14 datasets dataset NNS cord-000248-zueoyesj 868 15 studied study VBN cord-000248-zueoyesj 868 16 , , , cord-000248-zueoyesj 868 17 the the DT cord-000248-zueoyesj 868 18 quantitative quantitative JJ cord-000248-zueoyesj 868 19 changes change NNS cord-000248-zueoyesj 868 20 of of IN cord-000248-zueoyesj 868 21 Information Information NNP cord-000248-zueoyesj 868 22 Theory Theory NNP cord-000248-zueoyesj 868 23 measures measure NNS cord-000248-zueoyesj 868 24 , , , cord-000248-zueoyesj 868 25 Normalized Normalized NNP cord-000248-zueoyesj 868 26 Shannon Shannon NNP cord-000248-zueoyesj 868 27 Entropy Entropy NNP cord-000248-zueoyesj 868 28 , , , cord-000248-zueoyesj 868 29 Jensen- Jensen- NNP cord-000248-zueoyesj 868 30 Figure Figure NNP cord-000248-zueoyesj 868 31 19 19 CD cord-000248-zueoyesj 868 32 . . . cord-000248-zueoyesj 869 1 The the DT cord-000248-zueoyesj 869 2 stacked stacked JJ cord-000248-zueoyesj 869 3 average average JJ cord-000248-zueoyesj 869 4 gene gene NN cord-000248-zueoyesj 869 5 expression expression NN cord-000248-zueoyesj 869 6 of of IN cord-000248-zueoyesj 869 7 probes probe NNS cord-000248-zueoyesj 869 8 corresponding correspond VBG cord-000248-zueoyesj 869 9 to to IN cord-000248-zueoyesj 869 10 BRCA1 BRCA1 NNP cord-000248-zueoyesj 869 11 and and CC cord-000248-zueoyesj 869 12 TERF2 terf2 NN cord-000248-zueoyesj 870 1 ( ( -LRB- cord-000248-zueoyesj 870 2 telomeric telomeric NNP cord-000248-zueoyesj 870 3 repeat repeat NN cord-000248-zueoyesj 870 4 binding bind VBG cord-000248-zueoyesj 870 5 factor factor NN cord-000248-zueoyesj 870 6 2 2 CD cord-000248-zueoyesj 870 7 ) ) -RRB- cord-000248-zueoyesj 870 8 in in IN cord-000248-zueoyesj 870 9 True True NNP cord-000248-zueoyesj 870 10 et et NNP cord-000248-zueoyesj 870 11 al al NNP cord-000248-zueoyesj 870 12 's 's POS cord-000248-zueoyesj 870 13 prostate prostate NN cord-000248-zueoyesj 870 14 cancer cancer NN cord-000248-zueoyesj 870 15 dataset dataset NN cord-000248-zueoyesj 870 16 . . . cord-000248-zueoyesj 871 1 The the DT cord-000248-zueoyesj 871 2 first first JJ cord-000248-zueoyesj 871 3 group group NN cord-000248-zueoyesj 871 4 of of IN cord-000248-zueoyesj 871 5 samples sample NNS cord-000248-zueoyesj 871 6 ( ( -LRB- cord-000248-zueoyesj 871 7 1 1 CD cord-000248-zueoyesj 871 8 to to IN cord-000248-zueoyesj 871 9 9 9 CD cord-000248-zueoyesj 871 10 in in IN cord-000248-zueoyesj 871 11 green green JJ cord-000248-zueoyesj 871 12 ) ) -RRB- cord-000248-zueoyesj 871 13 correspond correspond VB cord-000248-zueoyesj 871 14 to to IN cord-000248-zueoyesj 871 15 Gleason Gleason NNP cord-000248-zueoyesj 871 16 3 3 CD cord-000248-zueoyesj 871 17 pattern pattern NN cord-000248-zueoyesj 871 18 , , , cord-000248-zueoyesj 871 19 indicating indicate VBG cord-000248-zueoyesj 871 20 that that IN cord-000248-zueoyesj 871 21 most most JJS cord-000248-zueoyesj 871 22 of of IN cord-000248-zueoyesj 871 23 the the DT cord-000248-zueoyesj 871 24 samples sample NNS cord-000248-zueoyesj 871 25 in in IN cord-000248-zueoyesj 871 26 this this DT cord-000248-zueoyesj 871 27 group group NN cord-000248-zueoyesj 871 28 have have VBP cord-000248-zueoyesj 871 29 no no DT cord-000248-zueoyesj 871 30 significantly significantly RB cord-000248-zueoyesj 871 31 reduced reduce VBN cord-000248-zueoyesj 871 32 expression expression NN cord-000248-zueoyesj 871 33 of of IN cord-000248-zueoyesj 871 34 this this DT cord-000248-zueoyesj 871 35 pair pair NN cord-000248-zueoyesj 871 36 of of IN cord-000248-zueoyesj 871 37 genes gene NNS cord-000248-zueoyesj 871 38 . . . cord-000248-zueoyesj 872 1 The the DT cord-000248-zueoyesj 872 2 second second JJ cord-000248-zueoyesj 872 3 group group NN cord-000248-zueoyesj 872 4 of of IN cord-000248-zueoyesj 872 5 columns column NNS cord-000248-zueoyesj 872 6 ( ( -LRB- cord-000248-zueoyesj 872 7 10 10 CD cord-000248-zueoyesj 872 8 to to TO cord-000248-zueoyesj 872 9 21 21 CD cord-000248-zueoyesj 872 10 in in IN cord-000248-zueoyesj 872 11 yellow yellow JJ cord-000248-zueoyesj 872 12 ) ) -RRB- cord-000248-zueoyesj 872 13 correspond correspond VBP cord-000248-zueoyesj 872 14 to to IN cord-000248-zueoyesj 872 15 Gleason Gleason NNP cord-000248-zueoyesj 872 16 4 4 CD cord-000248-zueoyesj 872 17 patterns pattern NNS cord-000248-zueoyesj 872 18 and and CC cord-000248-zueoyesj 872 19 the the DT cord-000248-zueoyesj 872 20 last last JJ cord-000248-zueoyesj 872 21 8 8 CD cord-000248-zueoyesj 872 22 columns column NNS cord-000248-zueoyesj 872 23 ( ( -LRB- cord-000248-zueoyesj 872 24 22 22 CD cord-000248-zueoyesj 872 25 to to TO cord-000248-zueoyesj 872 26 29 29 CD cord-000248-zueoyesj 872 27 in in IN cord-000248-zueoyesj 872 28 red red JJ cord-000248-zueoyesj 872 29 ) ) -RRB- cord-000248-zueoyesj 872 30 correspond correspond VB cord-000248-zueoyesj 872 31 to to IN cord-000248-zueoyesj 872 32 Gleason Gleason NNP cord-000248-zueoyesj 872 33 5 5 CD cord-000248-zueoyesj 872 34 samples sample NNS cord-000248-zueoyesj 872 35 . . . cord-000248-zueoyesj 873 1 A a DT cord-000248-zueoyesj 873 2 very very RB cord-000248-zueoyesj 873 3 recent recent JJ cord-000248-zueoyesj 873 4 study study NN cord-000248-zueoyesj 873 5 by by IN cord-000248-zueoyesj 873 6 Ballal Ballal NNP cord-000248-zueoyesj 873 7 et et NNP cord-000248-zueoyesj 873 8 al al NNP cord-000248-zueoyesj 873 9 . . NNP cord-000248-zueoyesj 873 10 have have VBP cord-000248-zueoyesj 873 11 linked link VBN cord-000248-zueoyesj 873 12 BRCA1 BRCA1 NNP cord-000248-zueoyesj 873 13 , , , cord-000248-zueoyesj 873 14 to to TO cord-000248-zueoyesj 873 15 telomere telomere VB cord-000248-zueoyesj 873 16 length length NN cord-000248-zueoyesj 873 17 and and CC cord-000248-zueoyesj 873 18 maintenance maintenance NN cord-000248-zueoyesj 873 19 and and CC cord-000248-zueoyesj 873 20 its -PRON- PRP$ cord-000248-zueoyesj 873 21 loss loss NN cord-000248-zueoyesj 873 22 from from IN cord-000248-zueoyesj 873 23 the the DT cord-000248-zueoyesj 873 24 telomere telomere NN cord-000248-zueoyesj 873 25 in in IN cord-000248-zueoyesj 873 26 response response NN cord-000248-zueoyesj 873 27 to to IN cord-000248-zueoyesj 873 28 DNA dna NN cord-000248-zueoyesj 873 29 damage damage NN cord-000248-zueoyesj 873 30 [ [ -LRB- cord-000248-zueoyesj 873 31 720 720 CD cord-000248-zueoyesj 873 32 ] ] -RRB- cord-000248-zueoyesj 874 1 ( ( -LRB- cord-000248-zueoyesj 874 2 see see VB cord-000248-zueoyesj 874 3 also also RB cord-000248-zueoyesj 874 4 [ [ -LRB- cord-000248-zueoyesj 874 5 721 721 CD cord-000248-zueoyesj 874 6 ] ] -RRB- cord-000248-zueoyesj 874 7 ) ) -RRB- cord-000248-zueoyesj 874 8 . . . cord-000248-zueoyesj 875 1 There there EX cord-000248-zueoyesj 875 2 is be VBZ cord-000248-zueoyesj 875 3 an an DT cord-000248-zueoyesj 875 4 increasing increase VBG cord-000248-zueoyesj 875 5 trend trend NN cord-000248-zueoyesj 875 6 of of IN cord-000248-zueoyesj 875 7 dowregulation dowregulation NN cord-000248-zueoyesj 875 8 , , , cord-000248-zueoyesj 875 9 so so IN cord-000248-zueoyesj 875 10 it -PRON- PRP cord-000248-zueoyesj 875 11 would would MD cord-000248-zueoyesj 875 12 be be VB cord-000248-zueoyesj 875 13 interesting interesting JJ cord-000248-zueoyesj 875 14 to to TO cord-000248-zueoyesj 875 15 evaluate evaluate VB cord-000248-zueoyesj 875 16 if if IN cord-000248-zueoyesj 875 17 indeed indeed RB cord-000248-zueoyesj 875 18 this this DT cord-000248-zueoyesj 875 19 pair pair NN cord-000248-zueoyesj 875 20 of of IN cord-000248-zueoyesj 875 21 proteins protein NNS cord-000248-zueoyesj 875 22 could could MD cord-000248-zueoyesj 875 23 be be VB cord-000248-zueoyesj 875 24 an an DT cord-000248-zueoyesj 875 25 early early JJ cord-000248-zueoyesj 875 26 marker marker NN cord-000248-zueoyesj 875 27 of of IN cord-000248-zueoyesj 875 28 dowregulation dowregulation NN cord-000248-zueoyesj 875 29 useful useful JJ cord-000248-zueoyesj 875 30 to to TO cord-000248-zueoyesj 875 31 evaluate evaluate VB cord-000248-zueoyesj 875 32 samples sample NNS cord-000248-zueoyesj 875 33 with with IN cord-000248-zueoyesj 875 34 Gleason Gleason NNP cord-000248-zueoyesj 875 35 pattern pattern NN cord-000248-zueoyesj 875 36 2 2 CD cord-000248-zueoyesj 875 37 , , , cord-000248-zueoyesj 875 38 or or CC cord-000248-zueoyesj 875 39 if if IN cord-000248-zueoyesj 875 40 may may MD cord-000248-zueoyesj 875 41 constitute constitute VB cord-000248-zueoyesj 875 42 a a DT cord-000248-zueoyesj 875 43 biomarker biomarker NN cord-000248-zueoyesj 875 44 useful useful JJ cord-000248-zueoyesj 875 45 to to TO cord-000248-zueoyesj 875 46 distinguish distinguish VB cord-000248-zueoyesj 875 47 a a DT cord-000248-zueoyesj 875 48 prostate prostate NN cord-000248-zueoyesj 875 49 cancer cancer NN cord-000248-zueoyesj 875 50 subtype subtype NN cord-000248-zueoyesj 875 51 . . . cord-000248-zueoyesj 876 1 doi:10.1371/ doi:10.1371/ NNP cord-000248-zueoyesj 877 1 journal.pone.0012262.g019 journal.pone.0012262.g019 NNP cord-000248-zueoyesj 877 2 Shannon Shannon NNP cord-000248-zueoyesj 877 3 divergence divergence NN cord-000248-zueoyesj 877 4 and and CC cord-000248-zueoyesj 877 5 the the DT cord-000248-zueoyesj 877 6 novel novel JJ cord-000248-zueoyesj 877 7 Statistical Statistical NNP cord-000248-zueoyesj 877 8 Complexity Complexity NNP cord-000248-zueoyesj 877 9 quantifiers quantifier NNS cord-000248-zueoyesj 877 10 defined define VBN cord-000248-zueoyesj 877 11 here here RB cord-000248-zueoyesj 877 12 are be VBP cord-000248-zueoyesj 877 13 in in IN cord-000248-zueoyesj 877 14 high high JJ cord-000248-zueoyesj 877 15 correlation correlation NN cord-000248-zueoyesj 877 16 with with IN cord-000248-zueoyesj 877 17 gene gene NN cord-000248-zueoyesj 877 18 expression expression NN cord-000248-zueoyesj 877 19 changes change NNS cord-000248-zueoyesj 877 20 of of IN cord-000248-zueoyesj 877 21 well well RB cord-000248-zueoyesj 877 22 - - HYPH cord-000248-zueoyesj 877 23 established establish VBN cord-000248-zueoyesj 877 24 biomarkers biomarker NNS cord-000248-zueoyesj 877 25 associated associate VBN cord-000248-zueoyesj 877 26 to to IN cord-000248-zueoyesj 877 27 cancer cancer NN cord-000248-zueoyesj 877 28 progression progression NN cord-000248-zueoyesj 877 29 . . . cord-000248-zueoyesj 878 1 In in IN cord-000248-zueoyesj 878 2 addition addition NN cord-000248-zueoyesj 878 3 , , , cord-000248-zueoyesj 878 4 variations variation NNS cord-000248-zueoyesj 878 5 of of IN cord-000248-zueoyesj 878 6 the the DT cord-000248-zueoyesj 878 7 basic basic JJ cord-000248-zueoyesj 878 8 technique technique NN cord-000248-zueoyesj 878 9 ( ( -LRB- cord-000248-zueoyesj 878 10 i.e. i.e. FW cord-000248-zueoyesj 878 11 a a DT cord-000248-zueoyesj 878 12 modified modify VBN cord-000248-zueoyesj 878 13 form form NN cord-000248-zueoyesj 878 14 of of IN cord-000248-zueoyesj 878 15 statistical statistical JJ cord-000248-zueoyesj 878 16 complexity complexity NN cord-000248-zueoyesj 878 17 ) ) -RRB- cord-000248-zueoyesj 878 18 which which WDT cord-000248-zueoyesj 878 19 allows allow VBZ cord-000248-zueoyesj 878 20 us -PRON- PRP cord-000248-zueoyesj 878 21 to to TO cord-000248-zueoyesj 878 22 better better RB cord-000248-zueoyesj 878 23 understand understand VB cord-000248-zueoyesj 878 24 the the DT cord-000248-zueoyesj 878 25 phenotypic phenotypic JJ cord-000248-zueoyesj 878 26 changes change NNS cord-000248-zueoyesj 878 27 observed observe VBN cord-000248-zueoyesj 878 28 in in IN cord-000248-zueoyesj 878 29 these these DT cord-000248-zueoyesj 878 30 samples sample NNS cord-000248-zueoyesj 878 31 which which WDT cord-000248-zueoyesj 878 32 are be VBP cord-000248-zueoyesj 878 33 associated associate VBN cord-000248-zueoyesj 878 34 with with IN cord-000248-zueoyesj 878 35 the the DT cord-000248-zueoyesj 878 36 progression progression NN cord-000248-zueoyesj 878 37 and and CC cord-000248-zueoyesj 878 38 the the DT cord-000248-zueoyesj 878 39 transitions transition NNS cord-000248-zueoyesj 878 40 of of IN cord-000248-zueoyesj 878 41 the the DT cord-000248-zueoyesj 878 42 gene gene NN cord-000248-zueoyesj 878 43 expression expression NN cord-000248-zueoyesj 878 44 profiles profile NNS cord-000248-zueoyesj 878 45 . . . cord-000248-zueoyesj 879 1 For for IN cord-000248-zueoyesj 879 2 instance instance NN cord-000248-zueoyesj 879 3 , , , cord-000248-zueoyesj 879 4 in in IN cord-000248-zueoyesj 879 5 a a DT cord-000248-zueoyesj 879 6 properly properly RB cord-000248-zueoyesj 879 7 defined define VBN cord-000248-zueoyesj 879 8 Statistical Statistical NNP cord-000248-zueoyesj 879 9 Complexity Complexity NNP cord-000248-zueoyesj 879 10 vs. vs. IN cord-000248-zueoyesj 879 11 Entropy Entropy NNP cord-000248-zueoyesj 879 12 plane plane NN cord-000248-zueoyesj 879 13 , , , cord-000248-zueoyesj 879 14 on on IN cord-000248-zueoyesj 879 15 a a DT cord-000248-zueoyesj 879 16 melanoma melanoma NN cord-000248-zueoyesj 879 17 dataset dataset NN cord-000248-zueoyesj 879 18 first first RB cord-000248-zueoyesj 879 19 studied study VBD cord-000248-zueoyesj 879 20 in in IN cord-000248-zueoyesj 879 21 Ref Ref NNP cord-000248-zueoyesj 879 22 . . . cord-000248-zueoyesj 880 1 [ [ -LRB- cord-000248-zueoyesj 880 2 110 110 CD cord-000248-zueoyesj 880 3 ] ] -RRB- cord-000248-zueoyesj 880 4 , , , cord-000248-zueoyesj 880 5 samples sample NNS cord-000248-zueoyesj 880 6 appear appear VBP cord-000248-zueoyesj 880 7 in in IN cord-000248-zueoyesj 880 8 well well RB cord-000248-zueoyesj 880 9 differentiated differentiated JJ cord-000248-zueoyesj 880 10 ' ' '' cord-000248-zueoyesj 880 11 ' ' `` cord-000248-zueoyesj 880 12 clusters cluster NNS cord-000248-zueoyesj 880 13 ' ' '' cord-000248-zueoyesj 880 14 ' ' '' cord-000248-zueoyesj 880 15 . . . cord-000248-zueoyesj 881 1 These these DT cord-000248-zueoyesj 881 2 clusters cluster NNS cord-000248-zueoyesj 881 3 correlate correlate VBP cord-000248-zueoyesj 881 4 well well RB cord-000248-zueoyesj 881 5 with with IN cord-000248-zueoyesj 881 6 the the DT cord-000248-zueoyesj 881 7 phonotypic phonotypic JJ cord-000248-zueoyesj 881 8 characteristics characteristic NNS cord-000248-zueoyesj 881 9 of of IN cord-000248-zueoyesj 881 10 normal normal JJ cord-000248-zueoyesj 881 11 skin skin NN cord-000248-zueoyesj 881 12 , , , cord-000248-zueoyesj 881 13 nevi nevus NNS cord-000248-zueoyesj 881 14 , , , cord-000248-zueoyesj 881 15 primary primary JJ cord-000248-zueoyesj 881 16 and and CC cord-000248-zueoyesj 881 17 metastatic metastatic JJ cord-000248-zueoyesj 881 18 melanoma melanoma NN cord-000248-zueoyesj 881 19 . . . cord-000248-zueoyesj 882 1 In in IN cord-000248-zueoyesj 882 2 this this DT cord-000248-zueoyesj 882 3 ' ' '' cord-000248-zueoyesj 882 4 ' ' '' cord-000248-zueoyesj 882 5 Complexity complexity NN cord-000248-zueoyesj 882 6 vs. vs. IN cord-000248-zueoyesj 882 7 Entropy Entropy NNP cord-000248-zueoyesj 882 8 ' ' '' cord-000248-zueoyesj 882 9 ' ' '' cord-000248-zueoyesj 882 10 plane plane NN cord-000248-zueoyesj 882 11 , , , cord-000248-zueoyesj 882 12 primary primary JJ cord-000248-zueoyesj 882 13 melanomas melanoma NNS cord-000248-zueoyesj 882 14 samples sample NNS cord-000248-zueoyesj 882 15 appear appear VBP cord-000248-zueoyesj 882 16 ' ' '' cord-000248-zueoyesj 882 17 ' ' `` cord-000248-zueoyesj 882 18 bridging bridge VBG cord-000248-zueoyesj 882 19 ' ' '' cord-000248-zueoyesj 882 20 ' ' `` cord-000248-zueoyesj 882 21 benign benign JJ cord-000248-zueoyesj 882 22 nevi nevus NNS cord-000248-zueoyesj 882 23 and and CC cord-000248-zueoyesj 882 24 metastatic metastatic JJ cord-000248-zueoyesj 882 25 melanoma melanoma NN cord-000248-zueoyesj 882 26 samples sample NNS cord-000248-zueoyesj 882 27 . . . cord-000248-zueoyesj 883 1 Our -PRON- PRP$ cord-000248-zueoyesj 883 2 results result NNS cord-000248-zueoyesj 883 3 may may MD cord-000248-zueoyesj 883 4 also also RB cord-000248-zueoyesj 883 5 suggest suggest VB cord-000248-zueoyesj 883 6 that that IN cord-000248-zueoyesj 883 7 the the DT cord-000248-zueoyesj 883 8 evolution evolution NN cord-000248-zueoyesj 883 9 of of IN cord-000248-zueoyesj 883 10 metastatic metastatic JJ cord-000248-zueoyesj 883 11 melanoma melanoma NN cord-000248-zueoyesj 883 12 leads lead VBZ cord-000248-zueoyesj 883 13 to to IN cord-000248-zueoyesj 883 14 at at RB cord-000248-zueoyesj 883 15 least least RBS cord-000248-zueoyesj 883 16 two two CD cord-000248-zueoyesj 883 17 different different JJ cord-000248-zueoyesj 883 18 subtypes subtype NNS cord-000248-zueoyesj 883 19 . . . cord-000248-zueoyesj 884 1 The the DT cord-000248-zueoyesj 884 2 Normalized Normalized NNP cord-000248-zueoyesj 884 3 Shannon Shannon NNP cord-000248-zueoyesj 884 4 Entropy Entropy NNP cord-000248-zueoyesj 884 5 of of IN cord-000248-zueoyesj 884 6 a a DT cord-000248-zueoyesj 884 7 transcriptional transcriptional JJ cord-000248-zueoyesj 884 8 sample sample NN cord-000248-zueoyesj 884 9 profile profile NN cord-000248-zueoyesj 884 10 is be VBZ cord-000248-zueoyesj 884 11 calculated calculate VBN cord-000248-zueoyesj 884 12 associating associate VBG cord-000248-zueoyesj 884 13 the the DT cord-000248-zueoyesj 884 14 measured measure VBN cord-000248-zueoyesj 884 15 expression expression NN cord-000248-zueoyesj 884 16 values value NNS cord-000248-zueoyesj 884 17 of of IN cord-000248-zueoyesj 884 18 a a DT cord-000248-zueoyesj 884 19 gene gene NN cord-000248-zueoyesj 884 20 with with IN cord-000248-zueoyesj 884 21 the the DT cord-000248-zueoyesj 884 22 relatively relatively JJ cord-000248-zueoyesj 884 23 probability probability NN cord-000248-zueoyesj 884 24 of of IN cord-000248-zueoyesj 884 25 being be VBG cord-000248-zueoyesj 884 26 expressed express VBN cord-000248-zueoyesj 884 27 . . . cord-000248-zueoyesj 885 1 We -PRON- PRP cord-000248-zueoyesj 885 2 have have VBP cord-000248-zueoyesj 885 3 observed observe VBN cord-000248-zueoyesj 885 4 that that IN cord-000248-zueoyesj 885 5 , , , cord-000248-zueoyesj 885 6 in in IN cord-000248-zueoyesj 885 7 general general JJ cord-000248-zueoyesj 885 8 , , , cord-000248-zueoyesj 885 9 the the DT cord-000248-zueoyesj 885 10 transcriptomes transcriptome NNS cord-000248-zueoyesj 885 11 of of IN cord-000248-zueoyesj 885 12 tumour tumour NN cord-000248-zueoyesj 885 13 progressing progress VBG cord-000248-zueoyesj 885 14 cells cell NNS cord-000248-zueoyesj 885 15 tend tend VBP cord-000248-zueoyesj 885 16 to to TO cord-000248-zueoyesj 885 17 have have VB cord-000248-zueoyesj 885 18 lower low JJR cord-000248-zueoyesj 885 19 values value NNS cord-000248-zueoyesj 885 20 of of IN cord-000248-zueoyesj 885 21 Normalized Normalized NNP cord-000248-zueoyesj 885 22 Shannon Shannon NNP cord-000248-zueoyesj 885 23 Entropy Entropy NNP cord-000248-zueoyesj 885 24 than than IN cord-000248-zueoyesj 885 25 normal normal JJ cord-000248-zueoyesj 885 26 ones one NNS cord-000248-zueoyesj 885 27 . . . cord-000248-zueoyesj 886 1 Given give VBN cord-000248-zueoyesj 886 2 a a DT cord-000248-zueoyesj 886 3 population population NN cord-000248-zueoyesj 886 4 of of IN cord-000248-zueoyesj 886 5 normal normal JJ cord-000248-zueoyesj 886 6 cells cell NNS cord-000248-zueoyesj 886 7 of of IN cord-000248-zueoyesj 886 8 a a DT cord-000248-zueoyesj 886 9 given give VBN cord-000248-zueoyesj 886 10 tissue tissue NN cord-000248-zueoyesj 886 11 type type NN cord-000248-zueoyesj 886 12 it -PRON- PRP cord-000248-zueoyesj 886 13 is be VBZ cord-000248-zueoyesj 886 14 then then RB cord-000248-zueoyesj 886 15 possible possible JJ cord-000248-zueoyesj 886 16 to to TO cord-000248-zueoyesj 886 17 compute compute VB cord-000248-zueoyesj 886 18 useful useful JJ cord-000248-zueoyesj 886 19 measure measure NN cord-000248-zueoyesj 886 20 of of IN cord-000248-zueoyesj 886 21 divergence divergence NN cord-000248-zueoyesj 886 22 of of IN cord-000248-zueoyesj 886 23 cancer cancer NN cord-000248-zueoyesj 886 24 cell cell NN cord-000248-zueoyesj 886 25 profiles profile NNS cord-000248-zueoyesj 886 26 from from IN cord-000248-zueoyesj 886 27 the the DT cord-000248-zueoyesj 886 28 normal normal JJ cord-000248-zueoyesj 886 29 expression expression NN cord-000248-zueoyesj 886 30 average average JJ cord-000248-zueoyesj 886 31 profile profile NN cord-000248-zueoyesj 886 32 , , , cord-000248-zueoyesj 886 33 in in IN cord-000248-zueoyesj 886 34 terms term NNS cord-000248-zueoyesj 886 35 of of IN cord-000248-zueoyesj 886 36 Information information NN cord-000248-zueoyesj 886 37 Theory Theory NNP cord-000248-zueoyesj 886 38 quantifiers quantifier NNS cord-000248-zueoyesj 886 39 , , , cord-000248-zueoyesj 887 1 the the DT cord-000248-zueoyesj 887 2 Shannon Shannon NNP cord-000248-zueoyesj 887 3 Eveness Eveness NNP cord-000248-zueoyesj 887 4 normalized normalize VBD cord-000248-zueoyesj 887 5 entropy entropy NN cord-000248-zueoyesj 887 6 and and CC cord-000248-zueoyesj 887 7 generalized generalized JJ cord-000248-zueoyesj 887 8 statistical statistical JJ cord-000248-zueoyesj 887 9 complexity complexity NN cord-000248-zueoyesj 887 10 [ [ -LRB- cord-000248-zueoyesj 887 11 788 788 CD cord-000248-zueoyesj 887 12 , , , cord-000248-zueoyesj 887 13 789 789 CD cord-000248-zueoyesj 887 14 , , , cord-000248-zueoyesj 887 15 790 790 CD cord-000248-zueoyesj 887 16 ] ] -RRB- cord-000248-zueoyesj 887 17 . . . cord-000248-zueoyesj 888 1 In in IN cord-000248-zueoyesj 888 2 addition addition NN cord-000248-zueoyesj 888 3 , , , cord-000248-zueoyesj 888 4 our -PRON- PRP$ cord-000248-zueoyesj 888 5 observation observation NN cord-000248-zueoyesj 888 6 of of IN cord-000248-zueoyesj 888 7 the the DT cord-000248-zueoyesj 888 8 correlation correlation NN cord-000248-zueoyesj 888 9 of of IN cord-000248-zueoyesj 888 10 the the DT cord-000248-zueoyesj 888 11 statistical statistical JJ cord-000248-zueoyesj 888 12 complexity complexity NN cord-000248-zueoyesj 888 13 of of IN cord-000248-zueoyesj 888 14 tumours tumour NNS cord-000248-zueoyesj 888 15 with with IN cord-000248-zueoyesj 888 16 its -PRON- PRP$ cord-000248-zueoyesj 888 17 natural natural JJ cord-000248-zueoyesj 888 18 progression progression NN cord-000248-zueoyesj 888 19 allows allow VBZ cord-000248-zueoyesj 888 20 an an DT cord-000248-zueoyesj 888 21 unprecedented unprecedented JJ cord-000248-zueoyesj 888 22 way way NN cord-000248-zueoyesj 888 23 of of IN cord-000248-zueoyesj 888 24 finding find VBG cord-000248-zueoyesj 888 25 biomarkers biomarker NNS cord-000248-zueoyesj 888 26 that that WDT cord-000248-zueoyesj 888 27 links link VBZ cord-000248-zueoyesj 888 28 with with IN cord-000248-zueoyesj 888 29 the the DT cord-000248-zueoyesj 888 30 gradual gradual JJ cord-000248-zueoyesj 888 31 deterioration deterioration NN cord-000248-zueoyesj 888 32 of of IN cord-000248-zueoyesj 888 33 the the DT cord-000248-zueoyesj 888 34 genome genome NN cord-000248-zueoyesj 888 35 integrity integrity NN cord-000248-zueoyesj 888 36 . . . cord-000248-zueoyesj 889 1 The the DT cord-000248-zueoyesj 889 2 proposed propose VBN cord-000248-zueoyesj 889 3 methodology methodology NN cord-000248-zueoyesj 889 4 uncovered uncover VBN cord-000248-zueoyesj 889 5 , , , cord-000248-zueoyesj 889 6 for for IN cord-000248-zueoyesj 889 7 the the DT cord-000248-zueoyesj 889 8 first first JJ cord-000248-zueoyesj 889 9 time time NN cord-000248-zueoyesj 889 10 , , , cord-000248-zueoyesj 889 11 evidence evidence NN cord-000248-zueoyesj 889 12 of of IN cord-000248-zueoyesj 889 13 the the DT cord-000248-zueoyesj 889 14 putative putative JJ cord-000248-zueoyesj 889 15 role role NN cord-000248-zueoyesj 889 16 of of IN cord-000248-zueoyesj 889 17 impared impared JJ cord-000248-zueoyesj 889 18 centrosome centrosome NN cord-000248-zueoyesj 889 19 cohesion cohesion NN cord-000248-zueoyesj 889 20 in in IN cord-000248-zueoyesj 889 21 melanoma melanoma NN cord-000248-zueoyesj 889 22 progression progression NN cord-000248-zueoyesj 889 23 . . . cord-000248-zueoyesj 890 1 Statistical statistical JJ cord-000248-zueoyesj 890 2 complexity complexity NN cord-000248-zueoyesj 890 3 has have VBZ cord-000248-zueoyesj 890 4 then then RB cord-000248-zueoyesj 890 5 been be VBN cord-000248-zueoyesj 890 6 able able JJ cord-000248-zueoyesj 890 7 to to TO cord-000248-zueoyesj 890 8 pinpoint pinpoint VB cord-000248-zueoyesj 890 9 otherwise otherwise RB cord-000248-zueoyesj 890 10 unrecognized unrecognized JJ cord-000248-zueoyesj 890 11 biomarkers biomarker NNS cord-000248-zueoyesj 890 12 in in IN cord-000248-zueoyesj 890 13 concert concert NN cord-000248-zueoyesj 890 14 with with IN cord-000248-zueoyesj 890 15 existing exist VBG cord-000248-zueoyesj 890 16 ones one NNS cord-000248-zueoyesj 890 17 , , , cord-000248-zueoyesj 890 18 reinforcing reinforce VBG cord-000248-zueoyesj 890 19 the the DT cord-000248-zueoyesj 890 20 view view NN cord-000248-zueoyesj 890 21 that that IN cord-000248-zueoyesj 890 22 ' ' '' cord-000248-zueoyesj 890 23 ' ' `` cord-000248-zueoyesj 890 24 chromosomal chromosomal JJ cord-000248-zueoyesj 890 25 chaos chaos NN cord-000248-zueoyesj 890 26 ' ' '' cord-000248-zueoyesj 890 27 ' ' '' cord-000248-zueoyesj 890 28 and and CC cord-000248-zueoyesj 890 29 ' ' '' cord-000248-zueoyesj 890 30 ' ' '' cord-000248-zueoyesj 890 31 cancer cancer NN cord-000248-zueoyesj 890 32 as as IN cord-000248-zueoyesj 890 33 a a DT cord-000248-zueoyesj 890 34 chromosomal chromosomal JJ cord-000248-zueoyesj 890 35 disease disease NN cord-000248-zueoyesj 890 36 ' ' '' cord-000248-zueoyesj 890 37 ' ' '' cord-000248-zueoyesj 890 38 can can MD cord-000248-zueoyesj 890 39 be be VB cord-000248-zueoyesj 890 40 a a DT cord-000248-zueoyesj 890 41 useful useful JJ cord-000248-zueoyesj 890 42 guiding guide VBG cord-000248-zueoyesj 890 43 principle principle NN cord-000248-zueoyesj 890 44 to to TO cord-000248-zueoyesj 890 45 understand understand VB cord-000248-zueoyesj 890 46 the the DT cord-000248-zueoyesj 890 47 molecular molecular JJ cord-000248-zueoyesj 890 48 biology biology NN cord-000248-zueoyesj 890 49 of of IN cord-000248-zueoyesj 890 50 cancer cancer NN cord-000248-zueoyesj 890 51 and and CC cord-000248-zueoyesj 890 52 uncover uncover VB cord-000248-zueoyesj 890 53 the the DT cord-000248-zueoyesj 890 54 timeline timeline NN cord-000248-zueoyesj 890 55 of of IN cord-000248-zueoyesj 890 56 its -PRON- PRP$ cord-000248-zueoyesj 890 57 progression progression NN cord-000248-zueoyesj 890 58 . . . cord-000248-zueoyesj 891 1 This this DT cord-000248-zueoyesj 891 2 is be VBZ cord-000248-zueoyesj 891 3 a a DT cord-000248-zueoyesj 891 4 powerful powerful JJ cord-000248-zueoyesj 891 5 method method NN cord-000248-zueoyesj 891 6 to to TO cord-000248-zueoyesj 891 7 uncover uncover VB cord-000248-zueoyesj 891 8 ' ' '' cord-000248-zueoyesj 891 9 ' ' `` cord-000248-zueoyesj 891 10 oncosystems oncosystem NNS cord-000248-zueoyesj 891 11 ' ' '' cord-000248-zueoyesj 891 12 ' ' '' cord-000248-zueoyesj 891 13 instead instead RB cord-000248-zueoyesj 891 14 of of IN cord-000248-zueoyesj 891 15 ' ' `` cord-000248-zueoyesj 891 16 ' ' `` cord-000248-zueoyesj 891 17 oncogenes oncogene NNS cord-000248-zueoyesj 891 18 ' ' '' cord-000248-zueoyesj 891 19 ' ' '' cord-000248-zueoyesj 891 20 . . . cord-000248-zueoyesj 891 21 ' ' '' cord-000248-zueoyesj 891 22 ' ' `` cord-000248-zueoyesj 891 23 Oncosystems Oncosystems NNP cord-000248-zueoyesj 891 24 ' ' POS cord-000248-zueoyesj 891 25 ' ' '' cord-000248-zueoyesj 891 26 are be VBP cord-000248-zueoyesj 891 27 a a DT cord-000248-zueoyesj 891 28 highly highly RB cord-000248-zueoyesj 891 29 differentially differentially RB cord-000248-zueoyesj 891 30 disregulated disregulate VBN cord-000248-zueoyesj 891 31 set set NN cord-000248-zueoyesj 891 32 of of IN cord-000248-zueoyesj 891 33 genes gene NNS cord-000248-zueoyesj 891 34 that that WDT cord-000248-zueoyesj 891 35 , , , cord-000248-zueoyesj 891 36 if if IN cord-000248-zueoyesj 891 37 linked link VBN cord-000248-zueoyesj 891 38 with with IN cord-000248-zueoyesj 891 39 the the DT cord-000248-zueoyesj 891 40 molecular molecular NN cord-000248-zueoyesj 891 41 ' ' '' cord-000248-zueoyesj 891 42 ' ' `` cord-000248-zueoyesj 891 43 hallmarks hallmark NNS cord-000248-zueoyesj 891 44 of of IN cord-000248-zueoyesj 891 45 cancer cancer NN cord-000248-zueoyesj 891 46 ' ' '' cord-000248-zueoyesj 891 47 ' ' '' cord-000248-zueoyesj 891 48 described describe VBN cord-000248-zueoyesj 891 49 in in IN cord-000248-zueoyesj 891 50 the the DT cord-000248-zueoyesj 891 51 introduction introduction NN cord-000248-zueoyesj 891 52 , , , cord-000248-zueoyesj 891 53 and and CC cord-000248-zueoyesj 891 54 existing exist VBG cord-000248-zueoyesj 891 55 databases database NNS cord-000248-zueoyesj 891 56 with with IN cord-000248-zueoyesj 891 57 putative putative JJ cord-000248-zueoyesj 891 58 common common JJ cord-000248-zueoyesj 891 59 functional functional JJ cord-000248-zueoyesj 891 60 genomic genomic JJ cord-000248-zueoyesj 891 61 annotations annotation NNS cord-000248-zueoyesj 891 62 , , , cord-000248-zueoyesj 891 63 can can MD cord-000248-zueoyesj 891 64 help help VB cord-000248-zueoyesj 891 65 to to TO cord-000248-zueoyesj 891 66 understand understand VB cord-000248-zueoyesj 891 67 the the DT cord-000248-zueoyesj 891 68 biological biological JJ cord-000248-zueoyesj 891 69 progression progression NN cord-000248-zueoyesj 891 70 pathways pathway NNS cord-000248-zueoyesj 891 71 that that WDT cord-000248-zueoyesj 891 72 drive drive VBP cord-000248-zueoyesj 891 73 the the DT cord-000248-zueoyesj 891 74 disease disease NN cord-000248-zueoyesj 891 75 . . . cord-000248-zueoyesj 892 1 On on IN cord-000248-zueoyesj 892 2 one one CD cord-000248-zueoyesj 892 3 of of IN cord-000248-zueoyesj 892 4 the the DT cord-000248-zueoyesj 892 5 prostate prostate NN cord-000248-zueoyesj 892 6 cancer cancer NN cord-000248-zueoyesj 892 7 dataset dataset NN cord-000248-zueoyesj 892 8 studied study VBD cord-000248-zueoyesj 892 9 ( ( -LRB- cord-000248-zueoyesj 892 10 obtained obtain VBN cord-000248-zueoyesj 892 11 from from IN cord-000248-zueoyesj 892 12 a a DT cord-000248-zueoyesj 892 13 previous previous JJ cord-000248-zueoyesj 892 14 published publish VBN cord-000248-zueoyesj 892 15 study study NN cord-000248-zueoyesj 892 16 , , , cord-000248-zueoyesj 892 17 [ [ -LRB- cord-000248-zueoyesj 892 18 44 44 CD cord-000248-zueoyesj 892 19 ] ] -RRB- cord-000248-zueoyesj 892 20 ) ) -RRB- cord-000248-zueoyesj 892 21 , , , cord-000248-zueoyesj 892 22 we -PRON- PRP cord-000248-zueoyesj 892 23 observe observe VBP cord-000248-zueoyesj 892 24 a a DT cord-000248-zueoyesj 892 25 gradual gradual JJ cord-000248-zueoyesj 892 26 pattern pattern NN cord-000248-zueoyesj 892 27 of of IN cord-000248-zueoyesj 892 28 reduction reduction NN cord-000248-zueoyesj 892 29 of of IN cord-000248-zueoyesj 892 30 Normalized Normalized NNP cord-000248-zueoyesj 892 31 Shannon Shannon NNP cord-000248-zueoyesj 892 32 Entropy Entropy NNP cord-000248-zueoyesj 892 33 from from IN cord-000248-zueoyesj 892 34 three three CD cord-000248-zueoyesj 892 35 well well RB cord-000248-zueoyesj 892 36 characterized characterize VBN cord-000248-zueoyesj 892 37 tissue tissue NN cord-000248-zueoyesj 892 38 types type NNS cord-000248-zueoyesj 892 39 : : : cord-000248-zueoyesj 892 40 normal normal JJ cord-000248-zueoyesj 892 41 prostate prostate NN cord-000248-zueoyesj 892 42 , , , cord-000248-zueoyesj 892 43 primary primary JJ cord-000248-zueoyesj 892 44 prostate prostate NN cord-000248-zueoyesj 892 45 tumours tumour NNS cord-000248-zueoyesj 892 46 and and CC cord-000248-zueoyesj 892 47 lymph lymph NN cord-000248-zueoyesj 892 48 node node NN cord-000248-zueoyesj 892 49 metastases metastasis NNS cord-000248-zueoyesj 892 50 . . . cord-000248-zueoyesj 893 1 On on IN cord-000248-zueoyesj 893 2 a a DT cord-000248-zueoyesj 893 3 different different JJ cord-000248-zueoyesj 893 4 dataset dataset NN cord-000248-zueoyesj 893 5 on on IN cord-000248-zueoyesj 893 6 prostate prostate NN cord-000248-zueoyesj 893 7 cancer cancer NN cord-000248-zueoyesj 893 8 ( ( -LRB- cord-000248-zueoyesj 893 9 from from IN cord-000248-zueoyesj 893 10 Ref Ref NNP cord-000248-zueoyesj 893 11 [ [ -LRB- cord-000248-zueoyesj 893 12 332 332 CD cord-000248-zueoyesj 893 13 ] ] -RRB- cord-000248-zueoyesj 893 14 ) ) -RRB- cord-000248-zueoyesj 893 15 , , , cord-000248-zueoyesj 893 16 we -PRON- PRP cord-000248-zueoyesj 893 17 observe observe VBP cord-000248-zueoyesj 893 18 that that IN cord-000248-zueoyesj 893 19 a a DT cord-000248-zueoyesj 893 20 group group NN cord-000248-zueoyesj 893 21 of of IN cord-000248-zueoyesj 893 22 samples sample NNS cord-000248-zueoyesj 893 23 having have VBG cord-000248-zueoyesj 893 24 Gleason Gleason NNP cord-000248-zueoyesj 893 25 Figure Figure NNP cord-000248-zueoyesj 893 26 16 16 CD cord-000248-zueoyesj 893 27 is be VBZ cord-000248-zueoyesj 893 28 that that IN cord-000248-zueoyesj 893 29 we -PRON- PRP cord-000248-zueoyesj 893 30 have have VBP cord-000248-zueoyesj 893 31 now now RB cord-000248-zueoyesj 893 32 highlighted highlight VBN cord-000248-zueoyesj 893 33 the the DT cord-000248-zueoyesj 893 34 position position NN cord-000248-zueoyesj 893 35 of of IN cord-000248-zueoyesj 893 36 s s NNP cord-000248-zueoyesj 893 37 ome ome NN cord-000248-zueoyesj 893 38 probes probe NNS cord-000248-zueoyesj 893 39 which which WDT cord-000248-zueoyesj 893 40 have have VBP cord-000248-zueoyesj 893 41 been be VBN cord-000248-zueoyesj 893 42 annotated annotate VBN cord-000248-zueoyesj 893 43 as as IN cord-000248-zueoyesj 893 44 corresponding correspond VBG cord-000248-zueoyesj 893 45 to to IN cord-000248-zueoyesj 893 46 ' ' '' cord-000248-zueoyesj 893 47 ' ' '' cord-000248-zueoyesj 893 48 non non JJ cord-000248-zueoyesj 893 49 - - JJ cord-000248-zueoyesj 893 50 coding coding JJ cord-000248-zueoyesj 893 51 RNAs rna NNS cord-000248-zueoyesj 893 52 ' ' '' cord-000248-zueoyesj 893 53 ' ' '' cord-000248-zueoyesj 893 54 . . . cord-000248-zueoyesj 894 1 In in IN cord-000248-zueoyesj 894 2 particular particular JJ cord-000248-zueoyesj 894 3 , , , cord-000248-zueoyesj 894 4 we -PRON- PRP cord-000248-zueoyesj 894 5 highlight highlight VBP cord-000248-zueoyesj 894 6 those those DT cord-000248-zueoyesj 894 7 of of IN cord-000248-zueoyesj 894 8 MALAT1 MALAT1 NNP cord-000248-zueoyesj 894 9 ( ( -LRB- cord-000248-zueoyesj 894 10 Metastasis metastasis NN cord-000248-zueoyesj 894 11 associated associate VBD cord-000248-zueoyesj 894 12 lung lung NN cord-000248-zueoyesj 894 13 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 894 14 transcript transcript NN cord-000248-zueoyesj 894 15 1 1 CD cord-000248-zueoyesj 894 16 , , , cord-000248-zueoyesj 894 17 ( ( -LRB- cord-000248-zueoyesj 894 18 non non JJ cord-000248-zueoyesj 894 19 - - JJ cord-000248-zueoyesj 894 20 protein protein JJ cord-000248-zueoyesj 894 21 coding coding NN cord-000248-zueoyesj 894 22 ) ) -RRB- cord-000248-zueoyesj 894 23 ) ) -RRB- cord-000248-zueoyesj 894 24 , , , cord-000248-zueoyesj 894 25 SNORA60 SNORA60 NNP cord-000248-zueoyesj 895 1 ( ( -LRB- cord-000248-zueoyesj 895 2 small small JJ cord-000248-zueoyesj 895 3 nucleolar nucleolar NNP cord-000248-zueoyesj 895 4 RNA RNA NNP cord-000248-zueoyesj 895 5 , , , cord-000248-zueoyesj 895 6 H H NNP cord-000248-zueoyesj 895 7 / / SYM cord-000248-zueoyesj 895 8 ACA ACA NNP cord-000248-zueoyesj 895 9 box box NN cord-000248-zueoyesj 895 10 60 60 CD cord-000248-zueoyesj 895 11 ) ) -RRB- cord-000248-zueoyesj 895 12 ; ; : cord-000248-zueoyesj 896 1 both both DT cord-000248-zueoyesj 896 2 increasingly increasingly RB cord-000248-zueoyesj 896 3 downregulated downregulated JJ cord-000248-zueoyesj 896 4 , , , cord-000248-zueoyesj 896 5 SNHG1 SNHG1 NNP cord-000248-zueoyesj 896 6 ( ( -LRB- cord-000248-zueoyesj 896 7 small small JJ cord-000248-zueoyesj 896 8 nucleolar nucleolar NNP cord-000248-zueoyesj 896 9 RNA RNA NNP cord-000248-zueoyesj 896 10 host host NN cord-000248-zueoyesj 896 11 gene gene NN cord-000248-zueoyesj 896 12 1 1 CD cord-000248-zueoyesj 896 13 ( ( -LRB- cord-000248-zueoyesj 896 14 non non JJ cord-000248-zueoyesj 896 15 - - JJ cord-000248-zueoyesj 896 16 protein protein JJ cord-000248-zueoyesj 896 17 coding coding NN cord-000248-zueoyesj 896 18 ) ) -RRB- cord-000248-zueoyesj 896 19 ) ) -RRB- cord-000248-zueoyesj 896 20 and and CC cord-000248-zueoyesj 896 21 SNHG8 snhg8 IN cord-000248-zueoyesj 896 22 ( ( -LRB- cord-000248-zueoyesj 896 23 small small JJ cord-000248-zueoyesj 896 24 nucleolar nucleolar NNP cord-000248-zueoyesj 896 25 RNA RNA NNP cord-000248-zueoyesj 896 26 host host NN cord-000248-zueoyesj 896 27 gene gene NN cord-000248-zueoyesj 896 28 8 8 CD cord-000248-zueoyesj 896 29 ( ( -LRB- cord-000248-zueoyesj 896 30 non non JJ cord-000248-zueoyesj 896 31 - - JJ cord-000248-zueoyesj 896 32 protein protein JJ cord-000248-zueoyesj 896 33 coding coding NN cord-000248-zueoyesj 896 34 ) ) -RRB- cord-000248-zueoyesj 896 35 ) ) -RRB- cord-000248-zueoyesj 896 36 . . . cord-000248-zueoyesj 897 1 The the DT cord-000248-zueoyesj 897 2 probes probe NNS cord-000248-zueoyesj 897 3 for for IN cord-000248-zueoyesj 897 4 MALAT1 malat1 NN cord-000248-zueoyesj 897 5 / / SYM cord-000248-zueoyesj 897 6 MALAT-1 MALAT-1 NNP cord-000248-zueoyesj 897 7 [ [ -LRB- cord-000248-zueoyesj 897 8 742 742 CD cord-000248-zueoyesj 897 9 , , , cord-000248-zueoyesj 897 10 746 746 CD cord-000248-zueoyesj 897 11 , , , cord-000248-zueoyesj 897 12 747 747 CD cord-000248-zueoyesj 897 13 , , , cord-000248-zueoyesj 897 14 748 748 CD cord-000248-zueoyesj 897 15 , , , cord-000248-zueoyesj 897 16 749 749 CD cord-000248-zueoyesj 897 17 , , , cord-000248-zueoyesj 897 18 750 750 CD cord-000248-zueoyesj 897 19 , , , cord-000248-zueoyesj 897 20 751 751 CD cord-000248-zueoyesj 897 21 , , , cord-000248-zueoyesj 897 22 752 752 CD cord-000248-zueoyesj 897 23 , , , cord-000248-zueoyesj 897 24 753 753 CD cord-000248-zueoyesj 897 25 , , , cord-000248-zueoyesj 897 26 754 754 CD cord-000248-zueoyesj 897 27 , , , cord-000248-zueoyesj 897 28 755 755 CD cord-000248-zueoyesj 897 29 , , , cord-000248-zueoyesj 897 30 756 756 CD cord-000248-zueoyesj 897 31 , , , cord-000248-zueoyesj 897 32 757 757 CD cord-000248-zueoyesj 897 33 , , , cord-000248-zueoyesj 897 34 758 758 CD cord-000248-zueoyesj 897 35 ] ] -RRB- cord-000248-zueoyesj 897 36 have have VBP cord-000248-zueoyesj 897 37 a a DT cord-000248-zueoyesj 897 38 very very RB cord-000248-zueoyesj 897 39 conspiquous conspiquous JJ cord-000248-zueoyesj 897 40 position position NN cord-000248-zueoyesj 897 41 , , , cord-000248-zueoyesj 897 42 which which WDT cord-000248-zueoyesj 897 43 we -PRON- PRP cord-000248-zueoyesj 897 44 could could MD cord-000248-zueoyesj 897 45 judge judge VB cord-000248-zueoyesj 897 46 a a DT cord-000248-zueoyesj 897 47 priori priori NN cord-000248-zueoyesj 897 48 to to TO cord-000248-zueoyesj 897 49 be be VB cord-000248-zueoyesj 897 50 equivalent equivalent JJ cord-000248-zueoyesj 897 51 in in IN cord-000248-zueoyesj 897 52 relevance relevance NN cord-000248-zueoyesj 897 53 to to IN cord-000248-zueoyesj 897 54 those those DT cord-000248-zueoyesj 897 55 of of IN cord-000248-zueoyesj 897 56 the the DT cord-000248-zueoyesj 897 57 previously previously RB cord-000248-zueoyesj 897 58 discussed discuss VBN cord-000248-zueoyesj 897 59 roles role NNS cord-000248-zueoyesj 897 60 of of IN cord-000248-zueoyesj 897 61 SFPQ SFPQ NNP cord-000248-zueoyesj 897 62 , , , cord-000248-zueoyesj 897 63 CD40 CD40 NNP cord-000248-zueoyesj 897 64 , , , cord-000248-zueoyesj 897 65 BRCA1 BRCA1 NNP cord-000248-zueoyesj 897 66 , , , cord-000248-zueoyesj 897 67 and and CC cord-000248-zueoyesj 897 68 TP53 TP53 NNP cord-000248-zueoyesj 897 69 ( ( -LRB- cord-000248-zueoyesj 897 70 see see VB cord-000248-zueoyesj 897 71 Figure Figure NNP cord-000248-zueoyesj 897 72 16 16 CD cord-000248-zueoyesj 897 73 ) ) -RRB- cord-000248-zueoyesj 897 74 . . . cord-000248-zueoyesj 898 1 MALAT1 MALAT1 NNP cord-000248-zueoyesj 898 2 has have VBZ cord-000248-zueoyesj 898 3 been be VBN cord-000248-zueoyesj 898 4 recently recently RB cord-000248-zueoyesj 898 5 pointed point VBN cord-000248-zueoyesj 898 6 as as IN cord-000248-zueoyesj 898 7 a a DT cord-000248-zueoyesj 898 8 biomarker biomarker NN cord-000248-zueoyesj 898 9 in in IN cord-000248-zueoyesj 898 10 primary primary JJ cord-000248-zueoyesj 898 11 human human JJ cord-000248-zueoyesj 898 12 lobular lobular NNP cord-000248-zueoyesj 898 13 breast breast NN cord-000248-zueoyesj 898 14 cancer cancer NN cord-000248-zueoyesj 898 15 as as IN cord-000248-zueoyesj 898 16 a a DT cord-000248-zueoyesj 898 17 result result NN cord-000248-zueoyesj 898 18 of of IN cord-000248-zueoyesj 898 19 an an DT cord-000248-zueoyesj 898 20 analysis analysis NN cord-000248-zueoyesj 898 21 of of IN cord-000248-zueoyesj 898 22 over over IN cord-000248-zueoyesj 898 23 132,000 132,000 CD cord-000248-zueoyesj 898 24 Roche Roche NNP cord-000248-zueoyesj 898 25 454 454 CD cord-000248-zueoyesj 898 26 high high JJ cord-000248-zueoyesj 898 27 - - HYPH cord-000248-zueoyesj 898 28 confidence confidence NN cord-000248-zueoyesj 898 29 deep deep JJ cord-000248-zueoyesj 898 30 sequencing sequencing NN cord-000248-zueoyesj 898 31 reads read NNS cord-000248-zueoyesj 898 32 . . . cord-000248-zueoyesj 899 1 Within within IN cord-000248-zueoyesj 899 2 the the DT cord-000248-zueoyesj 899 3 thousands thousand NNS cord-000248-zueoyesj 899 4 of of IN cord-000248-zueoyesj 899 5 novel novel JJ cord-000248-zueoyesj 899 6 non non JJ cord-000248-zueoyesj 899 7 - - JJ cord-000248-zueoyesj 899 8 coding coding JJ cord-000248-zueoyesj 899 9 transcripts transcript NNS cord-000248-zueoyesj 899 10 of of IN cord-000248-zueoyesj 899 11 the the DT cord-000248-zueoyesj 899 12 breast breast NN cord-000248-zueoyesj 899 13 cancer cancer NN cord-000248-zueoyesj 899 14 transcriptome transcriptome NN cord-000248-zueoyesj 899 15 , , , cord-000248-zueoyesj 899 16 Guffanti Guffanti NNP cord-000248-zueoyesj 899 17 al al NNP cord-000248-zueoyesj 899 18 . . NNP cord-000248-zueoyesj 899 19 , , , cord-000248-zueoyesj 899 20 identified identify VBD cord-000248-zueoyesj 899 21 more more JJR cord-000248-zueoyesj 899 22 than than IN cord-000248-zueoyesj 899 23 three three CD cord-000248-zueoyesj 899 24 hundred hundred CD cord-000248-zueoyesj 899 25 reads read VBZ cord-000248-zueoyesj 899 26 corresponding correspond VBG cord-000248-zueoyesj 899 27 to to IN cord-000248-zueoyesj 899 28 MALAT1 MALAT1 NNP cord-000248-zueoyesj 899 29 [ [ -LRB- cord-000248-zueoyesj 899 30 749 749 CD cord-000248-zueoyesj 899 31 ] ] -RRB- cord-000248-zueoyesj 899 32 . . . cord-000248-zueoyesj 900 1 This this DT cord-000248-zueoyesj 900 2 non non JJ cord-000248-zueoyesj 900 3 - - JJ cord-000248-zueoyesj 900 4 coding coding JJ cord-000248-zueoyesj 900 5 RNA RNA NNP cord-000248-zueoyesj 900 6 , , , cord-000248-zueoyesj 900 7 first first RB cord-000248-zueoyesj 900 8 identified identify VBN cord-000248-zueoyesj 900 9 in in IN cord-000248-zueoyesj 900 10 2003 2003 CD cord-000248-zueoyesj 900 11 in in IN cord-000248-zueoyesj 900 12 non non JJ cord-000248-zueoyesj 900 13 - - JJ cord-000248-zueoyesj 900 14 small small JJ cord-000248-zueoyesj 900 15 cell cell NN cord-000248-zueoyesj 900 16 lung lung NN cord-000248-zueoyesj 900 17 cancer cancer NN cord-000248-zueoyesj 900 18 , , , cord-000248-zueoyesj 900 19 was be VBD cord-000248-zueoyesj 900 20 shown show VBN cord-000248-zueoyesj 900 21 to to TO cord-000248-zueoyesj 900 22 be be VB cord-000248-zueoyesj 900 23 highly highly RB cord-000248-zueoyesj 900 24 expressed express VBN cord-000248-zueoyesj 900 25 ( ( -LRB- cord-000248-zueoyesj 900 26 relative relative JJ cord-000248-zueoyesj 900 27 to to IN cord-000248-zueoyesj 900 28 GAPDH GAPDH NNP cord-000248-zueoyesj 900 29 ) ) -RRB- cord-000248-zueoyesj 900 30 in in IN cord-000248-zueoyesj 900 31 lung lung NN cord-000248-zueoyesj 900 32 , , , cord-000248-zueoyesj 900 33 pancreas pancreas NN cord-000248-zueoyesj 900 34 and and CC cord-000248-zueoyesj 900 35 prostate prostate NN cord-000248-zueoyesj 900 36 , , , cord-000248-zueoyesj 900 37 but but CC cord-000248-zueoyesj 900 38 not not RB cord-000248-zueoyesj 900 39 in in IN cord-000248-zueoyesj 900 40 other other JJ cord-000248-zueoyesj 900 41 tissues tissue NNS cord-000248-zueoyesj 900 42 including include VBG cord-000248-zueoyesj 900 43 muscle muscle NN cord-000248-zueoyesj 900 44 , , , cord-000248-zueoyesj 900 45 skin skin NN cord-000248-zueoyesj 900 46 , , , cord-000248-zueoyesj 900 47 stomach stomach NN cord-000248-zueoyesj 900 48 , , , cord-000248-zueoyesj 900 49 bone bone NN cord-000248-zueoyesj 900 50 marrow marrow NN cord-000248-zueoyesj 900 51 , , , cord-000248-zueoyesj 900 52 saliva saliva NN cord-000248-zueoyesj 900 53 , , , cord-000248-zueoyesj 900 54 thyroid thyroid NN cord-000248-zueoyesj 900 55 and and CC cord-000248-zueoyesj 900 56 adrenal adrenal JJ cord-000248-zueoyesj 900 57 glands gland NNS cord-000248-zueoyesj 900 58 , , , cord-000248-zueoyesj 900 59 uterus uterus NN cord-000248-zueoyesj 900 60 and and CC cord-000248-zueoyesj 900 61 fetal fetal JJ cord-000248-zueoyesj 900 62 liver liver NN cord-000248-zueoyesj 900 63 ( ( -LRB- cord-000248-zueoyesj 900 64 see see VB cord-000248-zueoyesj 900 65 figure figure NN cord-000248-zueoyesj 900 66 four four CD cord-000248-zueoyesj 900 67 of of IN cord-000248-zueoyesj 900 68 Ref Ref NNP cord-000248-zueoyesj 900 69 . . . cord-000248-zueoyesj 901 1 [ [ -LRB- cord-000248-zueoyesj 901 2 758 758 CD cord-000248-zueoyesj 901 3 ] ] -RRB- cord-000248-zueoyesj 901 4 ) ) -RRB- cord-000248-zueoyesj 901 5 . . . cord-000248-zueoyesj 902 1 Our -PRON- PRP$ cord-000248-zueoyesj 902 2 results result NNS cord-000248-zueoyesj 902 3 indicate indicate VBP cord-000248-zueoyesj 902 4 that that IN cord-000248-zueoyesj 902 5 the the DT cord-000248-zueoyesj 902 6 reduction reduction NN cord-000248-zueoyesj 902 7 of of IN cord-000248-zueoyesj 902 8 expression expression NN cord-000248-zueoyesj 902 9 of of IN cord-000248-zueoyesj 902 10 some some DT cord-000248-zueoyesj 902 11 non non JJ cord-000248-zueoyesj 902 12 - - JJ cord-000248-zueoyesj 902 13 coding coding JJ cord-000248-zueoyesj 902 14 RNAs rna NNS cord-000248-zueoyesj 902 15 , , , cord-000248-zueoyesj 902 16 in in IN cord-000248-zueoyesj 902 17 particular particular JJ cord-000248-zueoyesj 902 18 of of IN cord-000248-zueoyesj 902 19 MALAT-1 MALAT-1 NNS cord-000248-zueoyesj 902 20 , , , cord-000248-zueoyesj 902 21 and and CC cord-000248-zueoyesj 902 22 SNORA60 SNORA60 NNP cord-000248-zueoyesj 902 23 with with IN cord-000248-zueoyesj 902 24 respect respect NN cord-000248-zueoyesj 902 25 to to IN cord-000248-zueoyesj 902 26 their -PRON- PRP$ cord-000248-zueoyesj 902 27 normal normal JJ cord-000248-zueoyesj 902 28 expression expression NN cord-000248-zueoyesj 902 29 in in IN cord-000248-zueoyesj 902 30 prostate prostate NN cord-000248-zueoyesj 902 31 , , , cord-000248-zueoyesj 902 32 as as RB cord-000248-zueoyesj 902 33 well well RB cord-000248-zueoyesj 902 34 as as IN cord-000248-zueoyesj 902 35 the the DT cord-000248-zueoyesj 902 36 upregulation upregulation NN cord-000248-zueoyesj 902 37 of of IN cord-000248-zueoyesj 902 38 SNHG8 snhg8 NN cord-000248-zueoyesj 903 1 and and CC cord-000248-zueoyesj 903 2 SNHG1 SNHG1 NNP cord-000248-zueoyesj 903 3 should should MD cord-000248-zueoyesj 903 4 be be VB cord-000248-zueoyesj 903 5 monitored monitor VBN cord-000248-zueoyesj 903 6 as as IN cord-000248-zueoyesj 903 7 useful useful JJ cord-000248-zueoyesj 903 8 biomarkers biomarker NNS cord-000248-zueoyesj 903 9 to to TO cord-000248-zueoyesj 903 10 track track VB cord-000248-zueoyesj 903 11 disease disease NN cord-000248-zueoyesj 903 12 staging staging NN cord-000248-zueoyesj 903 13 and and CC cord-000248-zueoyesj 903 14 progression progression NN cord-000248-zueoyesj 903 15 to to IN cord-000248-zueoyesj 903 16 a a DT cord-000248-zueoyesj 903 17 more more RBR cord-000248-zueoyesj 903 18 malignant malignant JJ cord-000248-zueoyesj 903 19 phenotype phenotype NN cord-000248-zueoyesj 903 20 . . . cord-000248-zueoyesj 904 1 Interestingly interestingly RB cord-000248-zueoyesj 904 2 enough enough RB cord-000248-zueoyesj 904 3 , , , cord-000248-zueoyesj 904 4 a a DT cord-000248-zueoyesj 904 5 study study NN cord-000248-zueoyesj 904 6 published publish VBN cord-000248-zueoyesj 904 7 in in IN cord-000248-zueoyesj 904 8 2006 2006 CD cord-000248-zueoyesj 904 9 by by IN cord-000248-zueoyesj 904 10 Nadminty Nadminty NNP cord-000248-zueoyesj 904 11 et et NNP cord-000248-zueoyesj 904 12 al al NNP cord-000248-zueoyesj 904 13 . . NNP cord-000248-zueoyesj 904 14 has have VBZ cord-000248-zueoyesj 904 15 shown show VBN cord-000248-zueoyesj 904 16 that that IN cord-000248-zueoyesj 904 17 KLK3 KLK3 NNP cord-000248-zueoyesj 904 18 / / SYM cord-000248-zueoyesj 904 19 PSA PSA NNP cord-000248-zueoyesj 904 20 modulates modulate VBZ cord-000248-zueoyesj 904 21 several several JJ cord-000248-zueoyesj 904 22 genes gene NNS cord-000248-zueoyesj 904 23 , , , cord-000248-zueoyesj 904 24 reporting report VBG cord-000248-zueoyesj 904 25 a a DT cord-000248-zueoyesj 904 26 16.5 16.5 CD cord-000248-zueoyesj 904 27 fold fold JJ cord-000248-zueoyesj 904 28 downregulation downregulation NN cord-000248-zueoyesj 904 29 of of IN cord-000248-zueoyesj 904 30 MALAT1 MALAT1 NNP cord-000248-zueoyesj 904 31 [ [ -LRB- cord-000248-zueoyesj 904 32 810 810 CD cord-000248-zueoyesj 904 33 ] ] -RRB- cord-000248-zueoyesj 904 34 . . . cord-000248-zueoyesj 905 1 While while IN cord-000248-zueoyesj 905 2 these these DT cord-000248-zueoyesj 905 3 results result NNS cord-000248-zueoyesj 905 4 have have VBP cord-000248-zueoyesj 905 5 been be VBN cord-000248-zueoyesj 905 6 obtained obtain VBN cord-000248-zueoyesj 905 7 using use VBG cord-000248-zueoyesj 905 8 the the DT cord-000248-zueoyesj 905 9 human human JJ cord-000248-zueoyesj 905 10 osteosarcoma osteosarcoma NN cord-000248-zueoyesj 905 11 cell cell NN cord-000248-zueoyesj 905 12 line line NN cord-000248-zueoyesj 905 13 SaOS-2 SaOS-2 NNP cord-000248-zueoyesj 905 14 , , , cord-000248-zueoyesj 905 15 our -PRON- PRP$ cord-000248-zueoyesj 905 16 results result NNS cord-000248-zueoyesj 905 17 indicate indicate VBP cord-000248-zueoyesj 905 18 that that IN cord-000248-zueoyesj 905 19 MALAT1 MALAT1 NNP cord-000248-zueoyesj 905 20 expression expression NN cord-000248-zueoyesj 905 21 in in IN cord-000248-zueoyesj 905 22 the the DT cord-000248-zueoyesj 905 23 normal normal JJ cord-000248-zueoyesj 905 24 prostate prostate NN cord-000248-zueoyesj 905 25 and and CC cord-000248-zueoyesj 905 26 in in IN cord-000248-zueoyesj 905 27 cancer cancer NN cord-000248-zueoyesj 905 28 cells cell NNS cord-000248-zueoyesj 905 29 could could MD cord-000248-zueoyesj 905 30 also also RB cord-000248-zueoyesj 905 31 be be VB cord-000248-zueoyesj 905 32 considered consider VBN cord-000248-zueoyesj 905 33 as as IN cord-000248-zueoyesj 905 34 a a DT cord-000248-zueoyesj 905 35 relevant relevant JJ cord-000248-zueoyesj 905 36 biomarkers biomarker NNS cord-000248-zueoyesj 905 37 to to TO cord-000248-zueoyesj 905 38 be be VB cord-000248-zueoyesj 905 39 tested test VBN cord-000248-zueoyesj 905 40 in in IN cord-000248-zueoyesj 905 41 the the DT cord-000248-zueoyesj 905 42 future future NN cord-000248-zueoyesj 905 43 . . . cord-000248-zueoyesj 906 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 907 1 /journal.pone.0012262.g020 /journal.pone.0012262.g020 NFP cord-000248-zueoyesj 907 2 patterns pattern NNS cord-000248-zueoyesj 907 3 4 4 CD cord-000248-zueoyesj 907 4 and and CC cord-000248-zueoyesj 907 5 5 5 CD cord-000248-zueoyesj 907 6 ( ( -LRB- cord-000248-zueoyesj 907 7 two two CD cord-000248-zueoyesj 907 8 patterns pattern NNS cord-000248-zueoyesj 907 9 which which WDT cord-000248-zueoyesj 907 10 are be VBP cord-000248-zueoyesj 907 11 typically typically RB cord-000248-zueoyesj 907 12 associated associate VBN cord-000248-zueoyesj 907 13 to to IN cord-000248-zueoyesj 907 14 an an DT cord-000248-zueoyesj 907 15 aggressive aggressive JJ cord-000248-zueoyesj 907 16 phenotype phenotype NN cord-000248-zueoyesj 907 17 ) ) -RRB- cord-000248-zueoyesj 907 18 have have VBP cord-000248-zueoyesj 907 19 lower low JJR cord-000248-zueoyesj 907 20 Normalized Normalized NNP cord-000248-zueoyesj 907 21 Shannon Shannon NNP cord-000248-zueoyesj 907 22 Entropy Entropy NNP cord-000248-zueoyesj 907 23 values value NNS cord-000248-zueoyesj 907 24 than than IN cord-000248-zueoyesj 907 25 a a DT cord-000248-zueoyesj 907 26 subset subset NN cord-000248-zueoyesj 907 27 of of IN cord-000248-zueoyesj 907 28 Gleason Gleason NNP cord-000248-zueoyesj 907 29 pattern pattern NN cord-000248-zueoyesj 907 30 3 3 CD cord-000248-zueoyesj 907 31 ( ( -LRB- cord-000248-zueoyesj 907 32 a a DT cord-000248-zueoyesj 907 33 pattern pattern NN cord-000248-zueoyesj 907 34 which which WDT cord-000248-zueoyesj 907 35 is be VBZ cord-000248-zueoyesj 907 36 normally normally RB cord-000248-zueoyesj 907 37 associated associate VBN cord-000248-zueoyesj 907 38 to to IN cord-000248-zueoyesj 907 39 a a DT cord-000248-zueoyesj 907 40 less less RBR cord-000248-zueoyesj 907 41 aggressive aggressive JJ cord-000248-zueoyesj 907 42 phenotype phenotype NN cord-000248-zueoyesj 908 1 but but CC cord-000248-zueoyesj 908 2 which which WDT cord-000248-zueoyesj 908 3 nevertheless nevertheless RB cord-000248-zueoyesj 908 4 is be VBZ cord-000248-zueoyesj 908 5 still still RB cord-000248-zueoyesj 908 6 of of IN cord-000248-zueoyesj 908 7 clinical clinical JJ cord-000248-zueoyesj 908 8 concern concern NN cord-000248-zueoyesj 908 9 ) ) -RRB- cord-000248-zueoyesj 908 10 . . . cord-000248-zueoyesj 909 1 However however RB cord-000248-zueoyesj 909 2 , , , cord-000248-zueoyesj 909 3 a a DT cord-000248-zueoyesj 909 4 group group NN cord-000248-zueoyesj 909 5 of of IN cord-000248-zueoyesj 909 6 samples sample NNS cord-000248-zueoyesj 909 7 having have VBG cord-000248-zueoyesj 909 8 Gleason Gleason NNP cord-000248-zueoyesj 909 9 patterns pattern NNS cord-000248-zueoyesj 909 10 3 3 CD cord-000248-zueoyesj 909 11 , , , cord-000248-zueoyesj 909 12 4 4 CD cord-000248-zueoyesj 909 13 , , , cord-000248-zueoyesj 909 14 and and CC cord-000248-zueoyesj 909 15 5 5 CD cord-000248-zueoyesj 909 16 is be VBZ cord-000248-zueoyesj 909 17 revealed reveal VBN cord-000248-zueoyesj 909 18 ; ; : cord-000248-zueoyesj 909 19 this this DT cord-000248-zueoyesj 909 20 mixed mixed JJ cord-000248-zueoyesj 909 21 cluster cluster NN cord-000248-zueoyesj 909 22 has have VBZ cord-000248-zueoyesj 909 23 a a DT cord-000248-zueoyesj 909 24 mid mid JJ cord-000248-zueoyesj 909 25 - - JJ cord-000248-zueoyesj 909 26 range range JJ cord-000248-zueoyesj 909 27 entropy entropy NN cord-000248-zueoyesj 909 28 . . . cord-000248-zueoyesj 910 1 This this DT cord-000248-zueoyesj 910 2 is be VBZ cord-000248-zueoyesj 910 3 an an DT cord-000248-zueoyesj 910 4 interesting interesting JJ cord-000248-zueoyesj 910 5 fact fact NN cord-000248-zueoyesj 910 6 which which WDT cord-000248-zueoyesj 910 7 correlates correlate VBZ cord-000248-zueoyesj 910 8 with with IN cord-000248-zueoyesj 910 9 the the DT cord-000248-zueoyesj 910 10 limitations limitation NNS cord-000248-zueoyesj 910 11 observed observe VBN cord-000248-zueoyesj 910 12 in in IN cord-000248-zueoyesj 910 13 Ref Ref NNP cord-000248-zueoyesj 910 14 . . . cord-000248-zueoyesj 911 1 [ [ -LRB- cord-000248-zueoyesj 911 2 332 332 CD cord-000248-zueoyesj 911 3 ] ] -RRB- cord-000248-zueoyesj 911 4 . . . cord-000248-zueoyesj 912 1 We -PRON- PRP cord-000248-zueoyesj 912 2 note note VBP cord-000248-zueoyesj 912 3 the the DT cord-000248-zueoyesj 912 4 authors author NNS cord-000248-zueoyesj 912 5 ' ' POS cord-000248-zueoyesj 912 6 comment comment NN cord-000248-zueoyesj 912 7 : : : cord-000248-zueoyesj 912 8 ' ' '' cord-000248-zueoyesj 912 9 ' ' '' cord-000248-zueoyesj 912 10 We -PRON- PRP cord-000248-zueoyesj 912 11 were be VBD cord-000248-zueoyesj 912 12 unable unable JJ cord-000248-zueoyesj 912 13 to to TO cord-000248-zueoyesj 912 14 identify identify VB cord-000248-zueoyesj 912 15 a a DT cord-000248-zueoyesj 912 16 cohort cohort NN cord-000248-zueoyesj 912 17 of of IN cord-000248-zueoyesj 912 18 genes gene NNS cord-000248-zueoyesj 912 19 that that WDT cord-000248-zueoyesj 912 20 could could MD cord-000248-zueoyesj 912 21 distinguish distinguish VB cord-000248-zueoyesj 912 22 between between IN cord-000248-zueoyesj 912 23 pattern pattern NN cord-000248-zueoyesj 912 24 4 4 CD cord-000248-zueoyesj 912 25 and and CC cord-000248-zueoyesj 912 26 5 5 CD cord-000248-zueoyesj 912 27 cancers cancer NNS cord-000248-zueoyesj 912 28 with with IN cord-000248-zueoyesj 912 29 sufficiently sufficiently RB cord-000248-zueoyesj 912 30 high high JJ cord-000248-zueoyesj 912 31 accuracy accuracy NN cord-000248-zueoyesj 912 32 to to TO cord-000248-zueoyesj 912 33 be be VB cord-000248-zueoyesj 912 34 useful useful JJ cord-000248-zueoyesj 912 35 , , , cord-000248-zueoyesj 912 36 suggesting suggest VBG cord-000248-zueoyesj 912 37 a a DT cord-000248-zueoyesj 912 38 high high JJ cord-000248-zueoyesj 912 39 degree degree NN cord-000248-zueoyesj 912 40 of of IN cord-000248-zueoyesj 912 41 similarity similarity NN cord-000248-zueoyesj 912 42 between between IN cord-000248-zueoyesj 912 43 these these DT cord-000248-zueoyesj 912 44 cancer cancer NN cord-000248-zueoyesj 912 45 histologies histology NNS cord-000248-zueoyesj 912 46 or or CC cord-000248-zueoyesj 912 47 substantial substantial JJ cord-000248-zueoyesj 912 48 molecular molecular JJ cord-000248-zueoyesj 912 49 heterogeneity heterogeneity NN cord-000248-zueoyesj 912 50 in in IN cord-000248-zueoyesj 912 51 one one CD cord-000248-zueoyesj 912 52 or or CC cord-000248-zueoyesj 912 53 both both DT cord-000248-zueoyesj 912 54 of of IN cord-000248-zueoyesj 912 55 these these DT cord-000248-zueoyesj 912 56 groups group NNS cord-000248-zueoyesj 912 57 . . . cord-000248-zueoyesj 912 58 ' ' '' cord-000248-zueoyesj 913 1 ' ' '' cord-000248-zueoyesj 914 1 Our -PRON- PRP$ cord-000248-zueoyesj 914 2 results result NNS cord-000248-zueoyesj 914 3 provide provide VBP cord-000248-zueoyesj 914 4 a a DT cord-000248-zueoyesj 914 5 conciliatory conciliatory JJ cord-000248-zueoyesj 914 6 middle middle JJ cord-000248-zueoyesj 914 7 ground ground NN cord-000248-zueoyesj 914 8 that that WDT cord-000248-zueoyesj 914 9 explains explain VBZ cord-000248-zueoyesj 914 10 the the DT cord-000248-zueoyesj 914 11 perceived perceive VBN cord-000248-zueoyesj 914 12 clinical clinical JJ cord-000248-zueoyesj 914 13 usefulness usefulness NN cord-000248-zueoyesj 914 14 of of IN cord-000248-zueoyesj 914 15 Gleason Gleason NNP cord-000248-zueoyesj 914 16 pattern pattern NN cord-000248-zueoyesj 914 17 classification classification NN cord-000248-zueoyesj 914 18 , , , cord-000248-zueoyesj 914 19 widely widely RB cord-000248-zueoyesj 914 20 used use VBN cord-000248-zueoyesj 914 21 around around IN cord-000248-zueoyesj 914 22 the the DT cord-000248-zueoyesj 914 23 world world NN cord-000248-zueoyesj 914 24 , , , cord-000248-zueoyesj 914 25 while while IN cord-000248-zueoyesj 914 26 at at IN cord-000248-zueoyesj 914 27 the the DT cord-000248-zueoyesj 914 28 same same JJ cord-000248-zueoyesj 914 29 time time NN cord-000248-zueoyesj 914 30 reveals reveal VBZ cord-000248-zueoyesj 914 31 the the DT cord-000248-zueoyesj 914 32 reason reason NN cord-000248-zueoyesj 914 33 for for IN cord-000248-zueoyesj 914 34 the the DT cord-000248-zueoyesj 914 35 difficulties difficulty NNS cord-000248-zueoyesj 914 36 of of IN cord-000248-zueoyesj 914 37 obtaining obtain VBG cord-000248-zueoyesj 914 38 a a DT cord-000248-zueoyesj 914 39 good good JJ cord-000248-zueoyesj 914 40 transcriptional transcriptional JJ cord-000248-zueoyesj 914 41 signature signature NN cord-000248-zueoyesj 914 42 for for IN cord-000248-zueoyesj 914 43 the the DT cord-000248-zueoyesj 914 44 other other JJ cord-000248-zueoyesj 914 45 two two CD cord-000248-zueoyesj 914 46 patterns pattern NNS cord-000248-zueoyesj 914 47 [ [ -LRB- cord-000248-zueoyesj 914 48 791 791 CD cord-000248-zueoyesj 914 49 ] ] -RRB- cord-000248-zueoyesj 914 50 . . . cord-000248-zueoyesj 915 1 We -PRON- PRP cord-000248-zueoyesj 915 2 have have VBP cord-000248-zueoyesj 915 3 seen see VBN cord-000248-zueoyesj 915 4 , , , cord-000248-zueoyesj 915 5 through through IN cord-000248-zueoyesj 915 6 a a DT cord-000248-zueoyesj 915 7 detailed detailed JJ cord-000248-zueoyesj 915 8 discussion discussion NN cord-000248-zueoyesj 915 9 of of IN cord-000248-zueoyesj 915 10 several several JJ cord-000248-zueoyesj 915 11 biomarkers biomarker NNS cord-000248-zueoyesj 915 12 in in IN cord-000248-zueoyesj 915 13 three three CD cord-000248-zueoyesj 915 14 different different JJ cord-000248-zueoyesj 915 15 datasets dataset NNS cord-000248-zueoyesj 915 16 , , , cord-000248-zueoyesj 915 17 that that IN cord-000248-zueoyesj 915 18 the the DT cord-000248-zueoyesj 915 19 variation variation NN cord-000248-zueoyesj 915 20 of of IN cord-000248-zueoyesj 915 21 the the DT cord-000248-zueoyesj 915 22 gene gene NN cord-000248-zueoyesj 915 23 expression expression NN cord-000248-zueoyesj 915 24 distributional distributional JJ cord-000248-zueoyesj 915 25 profile profile NN cord-000248-zueoyesj 915 26 can can MD cord-000248-zueoyesj 915 27 be be VB cord-000248-zueoyesj 915 28 characterized characterize VBN cord-000248-zueoyesj 915 29 via via IN cord-000248-zueoyesj 915 30 Information Information NNP cord-000248-zueoyesj 915 31 Theory Theory NNP cord-000248-zueoyesj 915 32 quantifiers quantifier NNS cord-000248-zueoyesj 915 33 . . . cord-000248-zueoyesj 916 1 Our -PRON- PRP$ cord-000248-zueoyesj 916 2 study study NN cord-000248-zueoyesj 916 3 also also RB cord-000248-zueoyesj 916 4 showed show VBD cord-000248-zueoyesj 916 5 that that IN cord-000248-zueoyesj 916 6 current current JJ cord-000248-zueoyesj 916 7 established establish VBN cord-000248-zueoyesj 916 8 biomarkers biomarker NNS cord-000248-zueoyesj 916 9 of of IN cord-000248-zueoyesj 916 10 the the DT cord-000248-zueoyesj 916 11 two two CD cord-000248-zueoyesj 916 12 diseases disease NNS cord-000248-zueoyesj 916 13 studied study VBN cord-000248-zueoyesj 916 14 seem seem VBP cord-000248-zueoyesj 916 15 to to TO cord-000248-zueoyesj 916 16 correlate correlate VB cord-000248-zueoyesj 916 17 with with IN cord-000248-zueoyesj 916 18 those those DT cord-000248-zueoyesj 916 19 that that WDT cord-000248-zueoyesj 916 20 best good JJS cord-000248-zueoyesj 916 21 co co NN cord-000248-zueoyesj 916 22 - - NN cord-000248-zueoyesj 916 23 variate variate VB cord-000248-zueoyesj 916 24 with with IN cord-000248-zueoyesj 916 25 these these DT cord-000248-zueoyesj 916 26 quantifiers quantifier NNS cord-000248-zueoyesj 916 27 . . . cord-000248-zueoyesj 917 1 For for IN cord-000248-zueoyesj 917 2 instance instance NN cord-000248-zueoyesj 917 3 , , , cord-000248-zueoyesj 917 4 AMACR AMACR NNP cord-000248-zueoyesj 917 5 , , , cord-000248-zueoyesj 917 6 in in IN cord-000248-zueoyesj 917 7 our -PRON- PRP$ cord-000248-zueoyesj 917 8 second second JJ cord-000248-zueoyesj 917 9 prostate prostate NN cord-000248-zueoyesj 917 10 cancer cancer NN cord-000248-zueoyesj 917 11 dataset dataset NN cord-000248-zueoyesj 917 12 studied study VBD cord-000248-zueoyesj 917 13 , , , cord-000248-zueoyesj 917 14 naturally naturally RB cord-000248-zueoyesj 917 15 appears appear VBZ cord-000248-zueoyesj 917 16 as as IN cord-000248-zueoyesj 917 17 one one CD cord-000248-zueoyesj 917 18 of of IN cord-000248-zueoyesj 917 19 the the DT cord-000248-zueoyesj 917 20 most most RBS cord-000248-zueoyesj 917 21 correlated correlate VBN cord-000248-zueoyesj 917 22 genes gene NNS cord-000248-zueoyesj 917 23 ( ( -LRB- cord-000248-zueoyesj 917 24 in in IN cord-000248-zueoyesj 917 25 both both CC cord-000248-zueoyesj 917 26 the the DT cord-000248-zueoyesj 917 27 Pearson Pearson NNP cord-000248-zueoyesj 917 28 and and CC cord-000248-zueoyesj 917 29 the the DT cord-000248-zueoyesj 917 30 Spearman Spearman NNP cord-000248-zueoyesj 917 31 sense sense NN cord-000248-zueoyesj 917 32 ) ) -RRB- cord-000248-zueoyesj 917 33 with with IN cord-000248-zueoyesj 917 34 the the DT cord-000248-zueoyesj 917 35 pattern pattern NN cord-000248-zueoyesj 917 36 of of IN cord-000248-zueoyesj 917 37 variation variation NN cord-000248-zueoyesj 917 38 of of IN cord-000248-zueoyesj 917 39 Entropy Entropy NNP cord-000248-zueoyesj 917 40 of of IN cord-000248-zueoyesj 917 41 the the DT cord-000248-zueoyesj 917 42 samples sample NNS cord-000248-zueoyesj 917 43 . . . cord-000248-zueoyesj 918 1 Together together RB cord-000248-zueoyesj 918 2 with with IN cord-000248-zueoyesj 918 3 MAOA MAOA NNP cord-000248-zueoyesj 918 4 , , , cord-000248-zueoyesj 918 5 which which WDT cord-000248-zueoyesj 918 6 is be VBZ cord-000248-zueoyesj 918 7 the the DT cord-000248-zueoyesj 918 8 highlighted highlight VBN cord-000248-zueoyesj 918 9 gene gene NN cord-000248-zueoyesj 918 10 in in IN cord-000248-zueoyesj 918 11 True True NNP cord-000248-zueoyesj 918 12 et et NNP cord-000248-zueoyesj 918 13 al al NNP cord-000248-zueoyesj 918 14 . . NNP cord-000248-zueoyesj 918 15 's 's POS cord-000248-zueoyesj 918 16 [ [ -LRB- cord-000248-zueoyesj 918 17 332 332 CD cord-000248-zueoyesj 918 18 ] ] -RRB- cord-000248-zueoyesj 918 19 original original JJ cord-000248-zueoyesj 918 20 publication publication NN cord-000248-zueoyesj 918 21 , , , cord-000248-zueoyesj 918 22 AMACR AMACR NNP cord-000248-zueoyesj 918 23 is be VBZ cord-000248-zueoyesj 918 24 now now RB cord-000248-zueoyesj 918 25 being be VBG cord-000248-zueoyesj 918 26 recognized recognize VBN cord-000248-zueoyesj 918 27 as as IN cord-000248-zueoyesj 918 28 one one CD cord-000248-zueoyesj 918 29 of of IN cord-000248-zueoyesj 918 30 the the DT cord-000248-zueoyesj 918 31 best good JJS cord-000248-zueoyesj 918 32 biomarkers biomarker NNS cord-000248-zueoyesj 918 33 in in IN cord-000248-zueoyesj 918 34 primary primary JJ cord-000248-zueoyesj 918 35 prostate prostate NN cord-000248-zueoyesj 918 36 cancer cancer NN cord-000248-zueoyesj 918 37 with with IN cord-000248-zueoyesj 918 38 approximately approximately RB cord-000248-zueoyesj 918 39 180 180 CD cord-000248-zueoyesj 918 40 publications publication NNS cord-000248-zueoyesj 918 41 dedicated dedicate VBN cord-000248-zueoyesj 918 42 to to IN cord-000248-zueoyesj 918 43 it -PRON- PRP cord-000248-zueoyesj 918 44 in in IN cord-000248-zueoyesj 918 45 the the DT cord-000248-zueoyesj 918 46 past past JJ cord-000248-zueoyesj 918 47 five five CD cord-000248-zueoyesj 918 48 years year NNS cord-000248-zueoyesj 918 49 . . . cord-000248-zueoyesj 919 1 We -PRON- PRP cord-000248-zueoyesj 919 2 have have VBP cord-000248-zueoyesj 919 3 also also RB cord-000248-zueoyesj 919 4 shown show VBN cord-000248-zueoyesj 919 5 that that IN cord-000248-zueoyesj 919 6 many many JJ cord-000248-zueoyesj 919 7 gene gene NN cord-000248-zueoyesj 919 8 probes probe NNS cord-000248-zueoyesj 919 9 that that WDT cord-000248-zueoyesj 919 10 best well RBS cord-000248-zueoyesj 919 11 correlate correlate VBP cord-000248-zueoyesj 919 12 with with IN cord-000248-zueoyesj 919 13 the the DT cord-000248-zueoyesj 919 14 divergence divergence NN cord-000248-zueoyesj 919 15 of of IN cord-000248-zueoyesj 919 16 the the DT cord-000248-zueoyesj 919 17 normal normal JJ cord-000248-zueoyesj 919 18 tissue tissue NN cord-000248-zueoyesj 919 19 profile profile NN cord-000248-zueoyesj 919 20 have have VBP cord-000248-zueoyesj 919 21 been be VBN cord-000248-zueoyesj 919 22 identified identify VBN cord-000248-zueoyesj 919 23 as as IN cord-000248-zueoyesj 919 24 useful useful JJ cord-000248-zueoyesj 919 25 biomarkers biomarker NNS cord-000248-zueoyesj 919 26 ( ( -LRB- cord-000248-zueoyesj 919 27 via via IN cord-000248-zueoyesj 919 28 other other JJ cord-000248-zueoyesj 919 29 accepted accepted JJ cord-000248-zueoyesj 919 30 validation validation NN cord-000248-zueoyesj 919 31 methods method NNS cord-000248-zueoyesj 919 32 ) ) -RRB- cord-000248-zueoyesj 919 33 . . . cord-000248-zueoyesj 920 1 This this DT cord-000248-zueoyesj 920 2 said say VBD cord-000248-zueoyesj 920 3 , , , cord-000248-zueoyesj 920 4 the the DT cord-000248-zueoyesj 920 5 use use NN cord-000248-zueoyesj 920 6 of of IN cord-000248-zueoyesj 920 7 other other JJ cord-000248-zueoyesj 920 8 sources source NNS cord-000248-zueoyesj 920 9 of of IN cord-000248-zueoyesj 920 10 information information NN cord-000248-zueoyesj 920 11 , , , cord-000248-zueoyesj 920 12 like like IN cord-000248-zueoyesj 920 13 pathway pathway NN cord-000248-zueoyesj 920 14 or or CC cord-000248-zueoyesj 920 15 gene gene NN cord-000248-zueoyesj 920 16 ontology ontology NN cord-000248-zueoyesj 920 17 databases database NNS cord-000248-zueoyesj 920 18 has have VBZ cord-000248-zueoyesj 920 19 lead lead VBN cord-000248-zueoyesj 920 20 as as IN cord-000248-zueoyesj 920 21 to to IN cord-000248-zueoyesj 920 22 the the DT cord-000248-zueoyesj 920 23 identification identification NN cord-000248-zueoyesj 920 24 of of IN cord-000248-zueoyesj 920 25 other other JJ cord-000248-zueoyesj 920 26 cell cell NN cord-000248-zueoyesj 920 27 processes process NNS cord-000248-zueoyesj 920 28 that that WDT cord-000248-zueoyesj 920 29 may may MD cord-000248-zueoyesj 920 30 be be VB cord-000248-zueoyesj 920 31 altered alter VBN cord-000248-zueoyesj 920 32 . . . cord-000248-zueoyesj 921 1 We -PRON- PRP cord-000248-zueoyesj 921 2 have have VBP cord-000248-zueoyesj 921 3 presented present VBN cord-000248-zueoyesj 921 4 a a DT cord-000248-zueoyesj 921 5 unifying unifying JJ cord-000248-zueoyesj 921 6 hallmark hallmark NN cord-000248-zueoyesj 921 7 of of IN cord-000248-zueoyesj 921 8 cancer cancer NN cord-000248-zueoyesj 921 9 , , , cord-000248-zueoyesj 921 10 the the DT cord-000248-zueoyesj 921 11 cancer cancer NN cord-000248-zueoyesj 921 12 cell cell NN cord-000248-zueoyesj 921 13 's 's POS cord-000248-zueoyesj 921 14 transcriptome transcriptome NN cord-000248-zueoyesj 921 15 changes change VBZ cord-000248-zueoyesj 921 16 its -PRON- PRP$ cord-000248-zueoyesj 921 17 Normalized Normalized NNP cord-000248-zueoyesj 921 18 Shannon Shannon NNP cord-000248-zueoyesj 921 19 Entropy Entropy NNP cord-000248-zueoyesj 921 20 ( ( -LRB- cord-000248-zueoyesj 921 21 as as IN cord-000248-zueoyesj 921 22 measured measure VBN cord-000248-zueoyesj 921 23 by by IN cord-000248-zueoyesj 921 24 high high JJ cord-000248-zueoyesj 921 25 - - HYPH cord-000248-zueoyesj 921 26 througput througput NN cord-000248-zueoyesj 921 27 technologies technology NNS cord-000248-zueoyesj 921 28 ) ) -RRB- cord-000248-zueoyesj 921 29 , , , cord-000248-zueoyesj 921 30 while while IN cord-000248-zueoyesj 921 31 it -PRON- PRP cord-000248-zueoyesj 921 32 increments increment VBZ cord-000248-zueoyesj 921 33 its -PRON- PRP$ cord-000248-zueoyesj 921 34 physical physical JJ cord-000248-zueoyesj 921 35 Entropy Entropy NNP cord-000248-zueoyesj 921 36 ( ( -LRB- cord-000248-zueoyesj 921 37 via via IN cord-000248-zueoyesj 921 38 creation creation NN cord-000248-zueoyesj 921 39 of of IN cord-000248-zueoyesj 921 40 states state NNS cord-000248-zueoyesj 921 41 we -PRON- PRP cord-000248-zueoyesj 921 42 might may MD cord-000248-zueoyesj 921 43 not not RB cord-000248-zueoyesj 921 44 measure measure VB cord-000248-zueoyesj 921 45 with with IN cord-000248-zueoyesj 921 46 our -PRON- PRP$ cord-000248-zueoyesj 921 47 devices device NNS cord-000248-zueoyesj 921 48 ) ) -RRB- cord-000248-zueoyesj 921 49 . . . cord-000248-zueoyesj 922 1 This this DT cord-000248-zueoyesj 922 2 hallmark hallmark NN cord-000248-zueoyesj 922 3 allows allow VBZ cord-000248-zueoyesj 922 4 , , , cord-000248-zueoyesj 922 5 via via IN cord-000248-zueoyesj 922 6 the the DT cord-000248-zueoyesj 922 7 use use NN cord-000248-zueoyesj 922 8 of of IN cord-000248-zueoyesj 922 9 the the DT cord-000248-zueoyesj 922 10 Jensen Jensen NNP cord-000248-zueoyesj 922 11 - - HYPH cord-000248-zueoyesj 922 12 Shannon Shannon NNP cord-000248-zueoyesj 922 13 divergence divergence NN cord-000248-zueoyesj 922 14 , , , cord-000248-zueoyesj 922 15 to to TO cord-000248-zueoyesj 922 16 identify identify VB cord-000248-zueoyesj 922 17 the the DT cord-000248-zueoyesj 922 18 arrow arrow NN cord-000248-zueoyesj 922 19 of of IN cord-000248-zueoyesj 922 20 time time NN cord-000248-zueoyesj 922 21 of of IN cord-000248-zueoyesj 922 22 the the DT cord-000248-zueoyesj 922 23 process process NN cord-000248-zueoyesj 922 24 , , , cord-000248-zueoyesj 922 25 and and CC cord-000248-zueoyesj 922 26 helps help VBZ cord-000248-zueoyesj 922 27 to to TO cord-000248-zueoyesj 922 28 map map VB cord-000248-zueoyesj 922 29 the the DT cord-000248-zueoyesj 922 30 phenotypical phenotypical JJ cord-000248-zueoyesj 922 31 and and CC cord-000248-zueoyesj 922 32 molecular molecular JJ cord-000248-zueoyesj 922 33 hallmarks hallmark NNS cord-000248-zueoyesj 922 34 of of IN cord-000248-zueoyesj 922 35 cancer cancer NN cord-000248-zueoyesj 922 36 as as IN cord-000248-zueoyesj 922 37 major major JJ cord-000248-zueoyesj 922 38 converging converging JJ cord-000248-zueoyesj 922 39 trends trend NNS cord-000248-zueoyesj 922 40 of of IN cord-000248-zueoyesj 922 41 the the DT cord-000248-zueoyesj 922 42 transcriptome transcriptome NN cord-000248-zueoyesj 922 43 . . . cord-000248-zueoyesj 923 1 The the DT cord-000248-zueoyesj 923 2 methodology methodology NN cord-000248-zueoyesj 923 3 has have VBZ cord-000248-zueoyesj 923 4 produced produce VBN cord-000248-zueoyesj 923 5 remarkable remarkable JJ cord-000248-zueoyesj 923 6 postdictions postdiction NNS cord-000248-zueoyesj 923 7 and and CC cord-000248-zueoyesj 923 8 retrodictions retrodiction NNS cord-000248-zueoyesj 923 9 that that WDT cord-000248-zueoyesj 923 10 show show VBP cord-000248-zueoyesj 923 11 that that IN cord-000248-zueoyesj 923 12 it -PRON- PRP cord-000248-zueoyesj 923 13 can can MD cord-000248-zueoyesj 923 14 predictively predictively RB cord-000248-zueoyesj 923 15 guide guide VB cord-000248-zueoyesj 923 16 biomarker biomarker NN cord-000248-zueoyesj 923 17 discovery discovery NN cord-000248-zueoyesj 923 18 . . . cord-000248-zueoyesj 924 1 We -PRON- PRP cord-000248-zueoyesj 924 2 refer refer VBP cord-000248-zueoyesj 924 3 the the DT cord-000248-zueoyesj 924 4 reader reader NN cord-000248-zueoyesj 924 5 to to IN cord-000248-zueoyesj 924 6 the the DT cord-000248-zueoyesj 924 7 original original JJ cord-000248-zueoyesj 924 8 publications publication NNS cord-000248-zueoyesj 924 9 for for IN cord-000248-zueoyesj 924 10 details detail NNS cord-000248-zueoyesj 924 11 of of IN cord-000248-zueoyesj 924 12 methods method NNS cord-000248-zueoyesj 924 13 for for IN cord-000248-zueoyesj 924 14 data datum NNS cord-000248-zueoyesj 924 15 collection collection NN cord-000248-zueoyesj 924 16 , , , cord-000248-zueoyesj 924 17 but but CC cord-000248-zueoyesj 924 18 we -PRON- PRP cord-000248-zueoyesj 924 19 highlight highlight VBP cord-000248-zueoyesj 924 20 here here RB cord-000248-zueoyesj 924 21 some some DT cord-000248-zueoyesj 924 22 aspects aspect NNS cord-000248-zueoyesj 924 23 that that WDT cord-000248-zueoyesj 924 24 are be VBP cord-000248-zueoyesj 924 25 important important JJ cord-000248-zueoyesj 924 26 to to TO cord-000248-zueoyesj 924 27 understand understand VB cord-000248-zueoyesj 924 28 the the DT cord-000248-zueoyesj 924 29 data data NN cord-000248-zueoyesj 924 30 generation generation NN cord-000248-zueoyesj 924 31 process process NN cord-000248-zueoyesj 924 32 for for IN cord-000248-zueoyesj 924 33 the the DT cord-000248-zueoyesj 924 34 purpose purpose NN cord-000248-zueoyesj 924 35 of of IN cord-000248-zueoyesj 924 36 our -PRON- PRP$ cord-000248-zueoyesj 924 37 analysis analysis NN cord-000248-zueoyesj 924 38 . . . cord-000248-zueoyesj 925 1 Samples sample NNS cord-000248-zueoyesj 925 2 were be VBD cord-000248-zueoyesj 925 3 obtrained obtraine VBN cord-000248-zueoyesj 925 4 from from IN cord-000248-zueoyesj 925 5 radical radical JJ cord-000248-zueoyesj 925 6 prostatectomy prostatectomy NN cord-000248-zueoyesj 925 7 surgical surgical JJ cord-000248-zueoyesj 925 8 procedures procedure NNS cord-000248-zueoyesj 925 9 . . . cord-000248-zueoyesj 926 1 Samples sample NNS cord-000248-zueoyesj 926 2 are be VBP cord-000248-zueoyesj 926 3 labelled label VBN cord-000248-zueoyesj 926 4 as as IN cord-000248-zueoyesj 926 5 ' ' '' cord-000248-zueoyesj 926 6 ' ' `` cord-000248-zueoyesj 926 7 tumors tumor NNS cord-000248-zueoyesj 926 8 ' ' '' cord-000248-zueoyesj 926 9 ' ' '' cord-000248-zueoyesj 926 10 if if IN cord-000248-zueoyesj 926 11 they -PRON- PRP cord-000248-zueoyesj 926 12 contain contain VBP cord-000248-zueoyesj 926 13 at at IN cord-000248-zueoyesj 926 14 least least RBS cord-000248-zueoyesj 926 15 90 90 CD cord-000248-zueoyesj 926 16 % % NN cord-000248-zueoyesj 926 17 of of IN cord-000248-zueoyesj 926 18 cancerous cancerous JJ cord-000248-zueoyesj 926 19 epithelial epithelial JJ cord-000248-zueoyesj 926 20 cells cell NNS cord-000248-zueoyesj 926 21 , , , cord-000248-zueoyesj 926 22 and and CC cord-000248-zueoyesj 926 23 they -PRON- PRP cord-000248-zueoyesj 926 24 were be VBD cord-000248-zueoyesj 926 25 considered consider VBN cord-000248-zueoyesj 926 26 as as IN cord-000248-zueoyesj 926 27 ' ' `` cord-000248-zueoyesj 926 28 ' ' '' cord-000248-zueoyesj 926 29 non non JJ cord-000248-zueoyesj 926 30 - - JJ cord-000248-zueoyesj 926 31 tumor tumor JJ cord-000248-zueoyesj 926 32 ' ' '' cord-000248-zueoyesj 926 33 ' ' '' cord-000248-zueoyesj 926 34 if if IN cord-000248-zueoyesj 926 35 they -PRON- PRP cord-000248-zueoyesj 926 36 contain contain VBP cord-000248-zueoyesj 926 37 no no DT cord-000248-zueoyesj 926 38 tumor tumor NN cord-000248-zueoyesj 926 39 epithelium epithelium NN cord-000248-zueoyesj 926 40 and and CC cord-000248-zueoyesj 926 41 are be VBP cord-000248-zueoyesj 926 42 from from IN cord-000248-zueoyesj 926 43 the the DT cord-000248-zueoyesj 926 44 noncancerous noncancerous JJ cord-000248-zueoyesj 926 45 region region NN cord-000248-zueoyesj 926 46 of of IN cord-000248-zueoyesj 926 47 the the DT cord-000248-zueoyesj 926 48 prostate prostate NN cord-000248-zueoyesj 926 49 . . . cord-000248-zueoyesj 927 1 The the DT cord-000248-zueoyesj 927 2 later later JJ cord-000248-zueoyesj 927 3 samples sample NNS cord-000248-zueoyesj 927 4 were be VBD cord-000248-zueoyesj 927 5 labelled label VBN cord-000248-zueoyesj 927 6 ' ' `` cord-000248-zueoyesj 927 7 ' ' `` cord-000248-zueoyesj 927 8 normals normal NNS cord-000248-zueoyesj 927 9 ' ' '' cord-000248-zueoyesj 927 10 ' ' '' cord-000248-zueoyesj 927 11 although although IN cord-000248-zueoyesj 927 12 the the DT cord-000248-zueoyesj 927 13 authors author NNS cord-000248-zueoyesj 927 14 alert alert VBP cord-000248-zueoyesj 927 15 that that IN cord-000248-zueoyesj 927 16 some some DT cord-000248-zueoyesj 927 17 may may MD cord-000248-zueoyesj 927 18 contain contain VB cord-000248-zueoyesj 927 19 dysplasia dysplasia NN cord-000248-zueoyesj 927 20 . . . cord-000248-zueoyesj 928 1 In in IN cord-000248-zueoyesj 928 2 this this DT cord-000248-zueoyesj 928 3 dataset dataset NN cord-000248-zueoyesj 928 4 , , , cord-000248-zueoyesj 928 5 Lapointe Lapointe NNP cord-000248-zueoyesj 928 6 et et FW cord-000248-zueoyesj 928 7 al al NNP cord-000248-zueoyesj 928 8 . . NNP cord-000248-zueoyesj 928 9 have have VBP cord-000248-zueoyesj 928 10 performed perform VBN cord-000248-zueoyesj 928 11 a a DT cord-000248-zueoyesj 928 12 gene gene NN cord-000248-zueoyesj 928 13 expression expression NN cord-000248-zueoyesj 928 14 profiling profiling NN cord-000248-zueoyesj 928 15 by by IN cord-000248-zueoyesj 928 16 using use VBG cord-000248-zueoyesj 928 17 cDNA cdna NN cord-000248-zueoyesj 928 18 microarrays microarray NNS cord-000248-zueoyesj 928 19 containing contain VBG cord-000248-zueoyesj 928 20 26,260 26,260 CD cord-000248-zueoyesj 928 21 different different JJ cord-000248-zueoyesj 928 22 human human JJ cord-000248-zueoyesj 928 23 genes gene NNS cord-000248-zueoyesj 928 24 ( ( -LRB- cord-000248-zueoyesj 928 25 UniGene UniGene NNP cord-000248-zueoyesj 928 26 clusters cluster NNS cord-000248-zueoyesj 928 27 ) ) -RRB- cord-000248-zueoyesj 928 28 . . . cord-000248-zueoyesj 929 1 Using use VBG cord-000248-zueoyesj 929 2 50 50 CD cord-000248-zueoyesj 929 3 mg mg NNS cord-000248-zueoyesj 929 4 of of IN cord-000248-zueoyesj 929 5 total total JJ cord-000248-zueoyesj 929 6 RNA RNA NNP cord-000248-zueoyesj 929 7 from from IN cord-000248-zueoyesj 929 8 prostate prostate NN cord-000248-zueoyesj 929 9 samples sample NNS cord-000248-zueoyesj 929 10 Cy5-labeled cy5-labele VBN cord-000248-zueoyesj 929 11 cDNA cdna NN cord-000248-zueoyesj 929 12 was be VBD cord-000248-zueoyesj 929 13 prepared prepared JJ cord-000248-zueoyesj 929 14 and and CC cord-000248-zueoyesj 929 15 Cy3-labeled Cy3-labeled NNP cord-000248-zueoyesj 929 16 cDNA cdna NN cord-000248-zueoyesj 929 17 used use VBD cord-000248-zueoyesj 929 18 1.5 1.5 CD cord-000248-zueoyesj 929 19 mg mg NNP cord-000248-zueoyesj 929 20 of of IN cord-000248-zueoyesj 929 21 mRNA mRNA NNP cord-000248-zueoyesj 929 22 common common JJ cord-000248-zueoyesj 929 23 reference reference NN cord-000248-zueoyesj 929 24 , , , cord-000248-zueoyesj 929 25 pooled pool VBN cord-000248-zueoyesj 929 26 from from IN cord-000248-zueoyesj 929 27 11 11 CD cord-000248-zueoyesj 929 28 human human JJ cord-000248-zueoyesj 929 29 cell cell NN cord-000248-zueoyesj 929 30 lines line NNS cord-000248-zueoyesj 929 31 ( ( -LRB- cord-000248-zueoyesj 929 32 see see VB cord-000248-zueoyesj 929 33 Ref Ref NNP cord-000248-zueoyesj 929 34 . . . cord-000248-zueoyesj 930 1 [ [ -LRB- cord-000248-zueoyesj 930 2 792 792 CD cord-000248-zueoyesj 930 3 ] ] -RRB- cord-000248-zueoyesj 930 4 ) ) -RRB- cord-000248-zueoyesj 930 5 . . . cord-000248-zueoyesj 931 1 The the DT cord-000248-zueoyesj 931 2 fluorescence fluorescence NN cord-000248-zueoyesj 931 3 ratios ratio NNS cord-000248-zueoyesj 931 4 were be VBD cord-000248-zueoyesj 931 5 subsequently subsequently RB cord-000248-zueoyesj 931 6 normalized normalize VBN cord-000248-zueoyesj 931 7 by by IN cord-000248-zueoyesj 931 8 mean mean JJ cord-000248-zueoyesj 931 9 centering center VBG cord-000248-zueoyesj 931 10 genes gene NNS cord-000248-zueoyesj 931 11 for for IN cord-000248-zueoyesj 931 12 each each DT cord-000248-zueoyesj 931 13 array array NN cord-000248-zueoyesj 931 14 , , , cord-000248-zueoyesj 931 15 a a DT cord-000248-zueoyesj 931 16 relatively relatively RB cord-000248-zueoyesj 931 17 standard standard JJ cord-000248-zueoyesj 931 18 procedure procedure NN cord-000248-zueoyesj 931 19 . . . cord-000248-zueoyesj 932 1 In in IN cord-000248-zueoyesj 932 2 addition addition NN cord-000248-zueoyesj 932 3 , , , cord-000248-zueoyesj 932 4 to to TO cord-000248-zueoyesj 932 5 minimize minimize VB cord-000248-zueoyesj 932 6 potential potential JJ cord-000248-zueoyesj 932 7 print print NN cord-000248-zueoyesj 932 8 run run VB cord-000248-zueoyesj 932 9 specific specific JJ cord-000248-zueoyesj 932 10 bias bias NN cord-000248-zueoyesj 932 11 , , , cord-000248-zueoyesj 932 12 Lapointe Lapointe NNP cord-000248-zueoyesj 932 13 et et FW cord-000248-zueoyesj 932 14 al al NNP cord-000248-zueoyesj 932 15 . . . cord-000248-zueoyesj 933 1 report report VB cord-000248-zueoyesj 933 2 that that IN cord-000248-zueoyesj 933 3 ratios ratio NNS cord-000248-zueoyesj 933 4 were be VBD cord-000248-zueoyesj 933 5 then then RB cord-000248-zueoyesj 933 6 mean mean JJ cord-000248-zueoyesj 933 7 centered center VBN cord-000248-zueoyesj 933 8 for for IN cord-000248-zueoyesj 933 9 each each DT cord-000248-zueoyesj 933 10 gene gene NN cord-000248-zueoyesj 933 11 across across IN cord-000248-zueoyesj 933 12 all all DT cord-000248-zueoyesj 933 13 arrays array NNS cord-000248-zueoyesj 933 14 according accord VBG cord-000248-zueoyesj 933 15 to to IN cord-000248-zueoyesj 933 16 Ref Ref NNP cord-000248-zueoyesj 933 17 . . . cord-000248-zueoyesj 934 1 [ [ -LRB- cord-000248-zueoyesj 934 2 793 793 CD cord-000248-zueoyesj 934 3 ] ] -RRB- cord-000248-zueoyesj 934 4 . . . cord-000248-zueoyesj 935 1 We -PRON- PRP cord-000248-zueoyesj 935 2 have have VBP cord-000248-zueoyesj 935 3 only only RB cord-000248-zueoyesj 935 4 used use VBN cord-000248-zueoyesj 935 5 the the DT cord-000248-zueoyesj 935 6 genes gene NNS cord-000248-zueoyesj 935 7 that that WDT cord-000248-zueoyesj 935 8 the the DT cord-000248-zueoyesj 935 9 authors author NNS cord-000248-zueoyesj 935 10 report report VBP cord-000248-zueoyesj 935 11 in in IN cord-000248-zueoyesj 935 12 their -PRON- PRP$ cord-000248-zueoyesj 935 13 first first JJ cord-000248-zueoyesj 935 14 figure figure NN cord-000248-zueoyesj 935 15 , , , cord-000248-zueoyesj 935 16 5,153 5,153 CD cord-000248-zueoyesj 935 17 genes gene NNS cord-000248-zueoyesj 935 18 that that WDT cord-000248-zueoyesj 935 19 have have VBP cord-000248-zueoyesj 935 20 been be VBN cord-000248-zueoyesj 935 21 well well RB cord-000248-zueoyesj 935 22 measured measure VBN cord-000248-zueoyesj 935 23 and and CC cord-000248-zueoyesj 935 24 have have VB cord-000248-zueoyesj 935 25 significan significan JJ cord-000248-zueoyesj 935 26 variation variation NN cord-000248-zueoyesj 935 27 in in IN cord-000248-zueoyesj 935 28 some some DT cord-000248-zueoyesj 935 29 of of IN cord-000248-zueoyesj 935 30 the the DT cord-000248-zueoyesj 935 31 samples sample NNS cord-000248-zueoyesj 935 32 . . . cord-000248-zueoyesj 936 1 For for IN cord-000248-zueoyesj 936 2 the the DT cord-000248-zueoyesj 936 3 other other JJ cord-000248-zueoyesj 936 4 details detail NNS cord-000248-zueoyesj 936 5 of of IN cord-000248-zueoyesj 936 6 their -PRON- PRP$ cord-000248-zueoyesj 936 7 matrials matrial NNS cord-000248-zueoyesj 936 8 and and CC cord-000248-zueoyesj 936 9 methods method NNS cord-000248-zueoyesj 936 10 we -PRON- PRP cord-000248-zueoyesj 936 11 refer refer VBP cord-000248-zueoyesj 936 12 the the DT cord-000248-zueoyesj 936 13 readers reader NNS cord-000248-zueoyesj 936 14 to to IN cord-000248-zueoyesj 936 15 the the DT cord-000248-zueoyesj 936 16 Supporting support VBG cord-000248-zueoyesj 936 17 Notes Notes NNPS cord-000248-zueoyesj 936 18 and and CC cord-000248-zueoyesj 936 19 the the DT cord-000248-zueoyesj 936 20 Materials Materials NNPS cord-000248-zueoyesj 936 21 and and CC cord-000248-zueoyesj 936 22 Methods Methods NNPS cord-000248-zueoyesj 936 23 section section NN cord-000248-zueoyesj 936 24 of of IN cord-000248-zueoyesj 936 25 their -PRON- PRP$ cord-000248-zueoyesj 936 26 original original JJ cord-000248-zueoyesj 936 27 publication publication NN cord-000248-zueoyesj 936 28 [ [ -LRB- cord-000248-zueoyesj 936 29 44 44 CD cord-000248-zueoyesj 936 30 ] ] -RRB- cord-000248-zueoyesj 936 31 . . . cord-000248-zueoyesj 937 1 Samples sample NNS cord-000248-zueoyesj 937 2 were be VBD cord-000248-zueoyesj 937 3 obtained obtain VBN cord-000248-zueoyesj 937 4 from from IN cord-000248-zueoyesj 937 5 nevus nevus NN cord-000248-zueoyesj 937 6 volunteers volunteer NNS cord-000248-zueoyesj 937 7 and and CC cord-000248-zueoyesj 937 8 melanoma melanoma NN cord-000248-zueoyesj 937 9 patients patient NNS cord-000248-zueoyesj 937 10 and and CC cord-000248-zueoyesj 937 11 only only RB cord-000248-zueoyesj 937 12 those those DT cord-000248-zueoyesj 937 13 samples sample NNS cord-000248-zueoyesj 937 14 that that WDT cord-000248-zueoyesj 937 15 have have VBP cord-000248-zueoyesj 937 16 more more JJR cord-000248-zueoyesj 937 17 than than IN cord-000248-zueoyesj 937 18 90 90 CD cord-000248-zueoyesj 937 19 % % NN cord-000248-zueoyesj 937 20 of of IN cord-000248-zueoyesj 937 21 tumor tumor NN cord-000248-zueoyesj 937 22 cells cell NNS cord-000248-zueoyesj 937 23 were be VBD cord-000248-zueoyesj 937 24 profiled profile VBN cord-000248-zueoyesj 937 25 . . . cord-000248-zueoyesj 938 1 The the DT cord-000248-zueoyesj 938 2 20,862 20,862 CD cord-000248-zueoyesj 938 3 cDNAs cDNAs NNPS cord-000248-zueoyesj 938 4 used use VBN cord-000248-zueoyesj 938 5 ( ( -LRB- cord-000248-zueoyesj 938 6 Research Research NNP cord-000248-zueoyesj 938 7 Genetics Genetics NNP cord-000248-zueoyesj 938 8 , , , cord-000248-zueoyesj 938 9 Huntsville Huntsville NNP cord-000248-zueoyesj 938 10 , , , cord-000248-zueoyesj 938 11 AL AL NNP cord-000248-zueoyesj 938 12 ) ) -RRB- cord-000248-zueoyesj 938 13 represent represent VBP cord-000248-zueoyesj 938 14 19,740 19,740 CD cord-000248-zueoyesj 938 15 independent independent JJ cord-000248-zueoyesj 938 16 loci locus NNS cord-000248-zueoyesj 938 17 . . . cord-000248-zueoyesj 939 1 ( ( -LRB- cord-000248-zueoyesj 939 2 Unigene Unigene NNP cord-000248-zueoyesj 939 3 build build VB cord-000248-zueoyesj 939 4 166).median 166).median CD cord-000248-zueoyesj 939 5 of of IN cord-000248-zueoyesj 939 6 ratio ratio NN cord-000248-zueoyesj 939 7 values value NNS cord-000248-zueoyesj 939 8 from from IN cord-000248-zueoyesj 939 9 the the DT cord-000248-zueoyesj 939 10 experiment experiment NN cord-000248-zueoyesj 939 11 were be VBD cord-000248-zueoyesj 939 12 subjected subject VBN cord-000248-zueoyesj 939 13 to to IN cord-000248-zueoyesj 939 14 linear linear JJ cord-000248-zueoyesj 939 15 normalization normalization NN cord-000248-zueoyesj 939 16 in in IN cord-000248-zueoyesj 939 17 nomad nomad NN cord-000248-zueoyesj 939 18 ( ( -LRB- cord-000248-zueoyesj 939 19 which which WDT cord-000248-zueoyesj 939 20 can can MD cord-000248-zueoyesj 939 21 be be VB cord-000248-zueoyesj 939 22 accessed access VBN cord-000248-zueoyesj 939 23 at at IN cord-000248-zueoyesj 939 24 http://derisilab.ucsf.edu http://derisilab.ucsf.edu NNP cord-000248-zueoyesj 939 25 ) ) -RRB- cord-000248-zueoyesj 939 26 , , , cord-000248-zueoyesj 939 27 log log NN cord-000248-zueoyesj 939 28 - - HYPH cord-000248-zueoyesj 939 29 transformed transform VBN cord-000248-zueoyesj 939 30 ( ( -LRB- cord-000248-zueoyesj 939 31 base base NN cord-000248-zueoyesj 939 32 2 2 CD cord-000248-zueoyesj 939 33 ) ) -RRB- cord-000248-zueoyesj 939 34 , , , cord-000248-zueoyesj 939 35 and and CC cord-000248-zueoyesj 939 36 filtered filter VBN cord-000248-zueoyesj 939 37 for for IN cord-000248-zueoyesj 939 38 genes gene NNS cord-000248-zueoyesj 939 39 where where WRB cord-000248-zueoyesj 939 40 data datum NNS cord-000248-zueoyesj 939 41 were be VBD cord-000248-zueoyesj 939 42 present present JJ cord-000248-zueoyesj 939 43 in in IN cord-000248-zueoyesj 939 44 80 80 CD cord-000248-zueoyesj 939 45 % % NN cord-000248-zueoyesj 939 46 of of IN cord-000248-zueoyesj 939 47 experiments experiment NNS cord-000248-zueoyesj 939 48 , , , cord-000248-zueoyesj 939 49 and and CC cord-000248-zueoyesj 939 50 where where WRB cord-000248-zueoyesj 939 51 the the DT cord-000248-zueoyesj 939 52 absolute absolute JJ cord-000248-zueoyesj 939 53 value value NN cord-000248-zueoyesj 939 54 of of IN cord-000248-zueoyesj 939 55 at at RB cord-000248-zueoyesj 939 56 least least RBS cord-000248-zueoyesj 939 57 one one CD cord-000248-zueoyesj 939 58 measurement measurement NN cord-000248-zueoyesj 939 59 was be VBD cord-000248-zueoyesj 939 60 .1 .1 . cord-000248-zueoyesj 939 61 . . . cord-000248-zueoyesj 940 1 In in IN cord-000248-zueoyesj 940 2 this this DT cord-000248-zueoyesj 940 3 dataset dataset NN cord-000248-zueoyesj 940 4 , , , cord-000248-zueoyesj 940 5 samples sample NNS cord-000248-zueoyesj 940 6 have have VBP cord-000248-zueoyesj 940 7 information information NN cord-000248-zueoyesj 940 8 of of IN cord-000248-zueoyesj 940 9 15,488 15,488 CD cord-000248-zueoyesj 940 10 spots spot NNS cord-000248-zueoyesj 940 11 per per IN cord-000248-zueoyesj 940 12 array array NN cord-000248-zueoyesj 940 13 , , , cord-000248-zueoyesj 940 14 with with IN cord-000248-zueoyesj 940 15 a a DT cord-000248-zueoyesj 940 16 total total NN cord-000248-zueoyesj 940 17 of of IN cord-000248-zueoyesj 940 18 7,700 7,700 CD cord-000248-zueoyesj 940 19 unique unique JJ cord-000248-zueoyesj 940 20 cDNAs cdna NNS cord-000248-zueoyesj 940 21 represented represent VBN cord-000248-zueoyesj 940 22 . . . cord-000248-zueoyesj 941 1 The the DT cord-000248-zueoyesj 941 2 samples sample NNS cord-000248-zueoyesj 941 3 were be VBD cord-000248-zueoyesj 941 4 obtained obtain VBN cord-000248-zueoyesj 941 5 from from IN cord-000248-zueoyesj 941 6 frozen frozen JJ cord-000248-zueoyesj 941 7 tissue tissue NN cord-000248-zueoyesj 941 8 blocks block NNS cord-000248-zueoyesj 941 9 from from IN cord-000248-zueoyesj 941 10 29 29 CD cord-000248-zueoyesj 941 11 radical radical JJ cord-000248-zueoyesj 941 12 prostatectomies prostatectomy NNS cord-000248-zueoyesj 941 13 accessioned accession VBN cord-000248-zueoyesj 941 14 and and CC cord-000248-zueoyesj 941 15 selected select VBN cord-000248-zueoyesj 941 16 to to TO cord-000248-zueoyesj 941 17 represent represent VB cord-000248-zueoyesj 941 18 Gleason Gleason NNP cord-000248-zueoyesj 941 19 grades grade NNS cord-000248-zueoyesj 941 20 3 3 CD cord-000248-zueoyesj 941 21 , , , cord-000248-zueoyesj 941 22 4 4 CD cord-000248-zueoyesj 941 23 , , , cord-000248-zueoyesj 941 24 and and CC cord-000248-zueoyesj 941 25 5 5 CD cord-000248-zueoyesj 941 26 . . . cord-000248-zueoyesj 942 1 The the DT cord-000248-zueoyesj 942 2 samples sample NNS cord-000248-zueoyesj 942 3 are be VBP cord-000248-zueoyesj 942 4 ' ' '' cord-000248-zueoyesj 942 5 ' ' '' cord-000248-zueoyesj 942 6 treatment treatment NN cord-000248-zueoyesj 942 7 naïve naïve NNP cord-000248-zueoyesj 942 8 ' ' '' cord-000248-zueoyesj 942 9 ' ' '' cord-000248-zueoyesj 942 10 , , , cord-000248-zueoyesj 942 11 meaning mean VBG cord-000248-zueoyesj 942 12 that that IN cord-000248-zueoyesj 942 13 they -PRON- PRP cord-000248-zueoyesj 942 14 were be VBD cord-000248-zueoyesj 942 15 also also RB cord-000248-zueoyesj 942 16 selected select VBN cord-000248-zueoyesj 942 17 such such JJ cord-000248-zueoyesj 942 18 that that IN cord-000248-zueoyesj 942 19 their -PRON- PRP$ cord-000248-zueoyesj 942 20 gene gene NN cord-000248-zueoyesj 942 21 expression expression NN cord-000248-zueoyesj 942 22 profile profile NN cord-000248-zueoyesj 942 23 is be VBZ cord-000248-zueoyesj 942 24 also also RB cord-000248-zueoyesj 942 25 and and CC cord-000248-zueoyesj 942 26 the the DT cord-000248-zueoyesj 942 27 absence absence NN cord-000248-zueoyesj 942 28 of of IN cord-000248-zueoyesj 942 29 any any DT cord-000248-zueoyesj 942 30 bias bias NN cord-000248-zueoyesj 942 31 that that IN cord-000248-zueoyesj 942 32 the the DT cord-000248-zueoyesj 942 33 treatment treatment NN cord-000248-zueoyesj 942 34 before before IN cord-000248-zueoyesj 942 35 prostatectomy prostatectomy NN cord-000248-zueoyesj 942 36 . . . cord-000248-zueoyesj 943 1 The the DT cord-000248-zueoyesj 943 2 frozen frozen JJ cord-000248-zueoyesj 943 3 sections section NNS cord-000248-zueoyesj 943 4 ( ( -LRB- cord-000248-zueoyesj 943 5 8 8 CD cord-000248-zueoyesj 943 6 mm mm NN cord-000248-zueoyesj 943 7 ) ) -RRB- cord-000248-zueoyesj 943 8 were be VBD cord-000248-zueoyesj 943 9 cut cut VBN cord-000248-zueoyesj 943 10 from from IN cord-000248-zueoyesj 943 11 optimal optimal JJ cord-000248-zueoyesj 943 12 cutting cut VBG cord-000248-zueoyesj 943 13 temperature temperature NN cord-000248-zueoyesj 943 14 medium medium NN cord-000248-zueoyesj 943 15 blocks block NNS cord-000248-zueoyesj 943 16 and and CC cord-000248-zueoyesj 943 17 immediately immediately RB cord-000248-zueoyesj 943 18 fixed fix VBN cord-000248-zueoyesj 943 19 in in IN cord-000248-zueoyesj 943 20 cold cold JJ cord-000248-zueoyesj 943 21 95 95 CD cord-000248-zueoyesj 943 22 % % NN cord-000248-zueoyesj 943 23 ethanol ethanol NN cord-000248-zueoyesj 943 24 . . . cord-000248-zueoyesj 944 1 Around around IN cord-000248-zueoyesj 944 2 5,000 5,000 CD cord-000248-zueoyesj 944 3 epithelial epithelial JJ cord-000248-zueoyesj 944 4 cells cell NNS cord-000248-zueoyesj 944 5 from from IN cord-000248-zueoyesj 944 6 both both CC cord-000248-zueoyesj 944 7 histologically histologically RB cord-000248-zueoyesj 944 8 benign benign JJ cord-000248-zueoyesj 944 9 glands gland NNS cord-000248-zueoyesj 944 10 and and CC cord-000248-zueoyesj 944 11 cancer cancer NN cord-000248-zueoyesj 944 12 glands gland NNS cord-000248-zueoyesj 944 13 were be VBD cord-000248-zueoyesj 944 14 separately separately RB cord-000248-zueoyesj 944 15 laser laser NN cord-000248-zueoyesj 944 16 - - HYPH cord-000248-zueoyesj 944 17 capture capture NN cord-000248-zueoyesj 944 18 microdissected microdissected JJ cord-000248-zueoyesj 944 19 ( ( -LRB- cord-000248-zueoyesj 944 20 LCM LCM NNP cord-000248-zueoyesj 944 21 ) ) -RRB- cord-000248-zueoyesj 944 22 . . . cord-000248-zueoyesj 945 1 The the DT cord-000248-zueoyesj 945 2 authors author NNS cord-000248-zueoyesj 945 3 of of IN cord-000248-zueoyesj 945 4 the the DT cord-000248-zueoyesj 945 5 study study NN cord-000248-zueoyesj 945 6 have have VBP cord-000248-zueoyesj 945 7 also also RB cord-000248-zueoyesj 945 8 been be VBN cord-000248-zueoyesj 945 9 very very RB cord-000248-zueoyesj 945 10 careful careful JJ cord-000248-zueoyesj 945 11 to to TO cord-000248-zueoyesj 945 12 include include VB cord-000248-zueoyesj 945 13 only only RB cord-000248-zueoyesj 945 14 one one CD cord-000248-zueoyesj 945 15 Gleason Gleason NNP cord-000248-zueoyesj 945 16 pattern pattern NN cord-000248-zueoyesj 945 17 in in IN cord-000248-zueoyesj 945 18 each each DT cord-000248-zueoyesj 945 19 laser laser NN cord-000248-zueoyesj 945 20 - - HYPH cord-000248-zueoyesj 945 21 captured capture VBN cord-000248-zueoyesj 945 22 cancer cancer NN cord-000248-zueoyesj 945 23 sample sample NN cord-000248-zueoyesj 945 24 , , , cord-000248-zueoyesj 945 25 following follow VBG cord-000248-zueoyesj 945 26 a a DT cord-000248-zueoyesj 945 27 process process NN cord-000248-zueoyesj 945 28 in in IN cord-000248-zueoyesj 945 29 which which WDT cord-000248-zueoyesj 945 30 the the DT cord-000248-zueoyesj 945 31 patterns pattern NNS cord-000248-zueoyesj 945 32 were be VBD cord-000248-zueoyesj 945 33 assessed assess VBN cord-000248-zueoyesj 945 34 independently independently RB cord-000248-zueoyesj 945 35 by by IN cord-000248-zueoyesj 945 36 two two CD cord-000248-zueoyesj 945 37 investigators investigator NNS cord-000248-zueoyesj 945 38 . . . cord-000248-zueoyesj 946 1 The the DT cord-000248-zueoyesj 946 2 matched match VBN cord-000248-zueoyesj 946 3 benign benign JJ cord-000248-zueoyesj 946 4 epithelium epithelium NN cord-000248-zueoyesj 946 5 was be VBD cord-000248-zueoyesj 946 6 captured capture VBN cord-000248-zueoyesj 946 7 for for IN cord-000248-zueoyesj 946 8 each each DT cord-000248-zueoyesj 946 9 cancer cancer NN cord-000248-zueoyesj 946 10 sample sample NN cord-000248-zueoyesj 946 11 for for IN cord-000248-zueoyesj 946 12 a a DT cord-000248-zueoyesj 946 13 total total NN cord-000248-zueoyesj 946 14 of of IN cord-000248-zueoyesj 946 15 121 121 CD cord-000248-zueoyesj 946 16 samples sample NNS cord-000248-zueoyesj 946 17 . . . cord-000248-zueoyesj 947 1 An an DT cord-000248-zueoyesj 947 2 important important JJ cord-000248-zueoyesj 947 3 characteristic characteristic NN cord-000248-zueoyesj 947 4 of of IN cord-000248-zueoyesj 947 5 this this DT cord-000248-zueoyesj 947 6 dataset dataset NN cord-000248-zueoyesj 947 7 is be VBZ cord-000248-zueoyesj 947 8 the the DT cord-000248-zueoyesj 947 9 normalization normalization NN cord-000248-zueoyesj 947 10 procedure procedure NN cord-000248-zueoyesj 947 11 . . . cord-000248-zueoyesj 948 1 For for IN cord-000248-zueoyesj 948 2 each each DT cord-000248-zueoyesj 948 3 spot spot NN cord-000248-zueoyesj 948 4 and and CC cord-000248-zueoyesj 948 5 in in IN cord-000248-zueoyesj 948 6 each each DT cord-000248-zueoyesj 948 7 channel channel NN cord-000248-zueoyesj 948 8 ( ( -LRB- cord-000248-zueoyesj 948 9 Cy3 Cy3 NNP cord-000248-zueoyesj 948 10 and and CC cord-000248-zueoyesj 948 11 Cy5 cy5 CD cord-000248-zueoyesj 948 12 ) ) -RRB- cord-000248-zueoyesj 948 13 , , , cord-000248-zueoyesj 948 14 True true JJ cord-000248-zueoyesj 948 15 et et NNP cord-000248-zueoyesj 948 16 al al NNP cord-000248-zueoyesj 948 17 . . NNP cord-000248-zueoyesj 948 18 substracted substracte VBD cord-000248-zueoyesj 948 19 the the DT cord-000248-zueoyesj 948 20 median median JJ cord-000248-zueoyesj 948 21 background background NN cord-000248-zueoyesj 948 22 intensity intensity NN cord-000248-zueoyesj 948 23 from from IN cord-000248-zueoyesj 948 24 the the DT cord-000248-zueoyesj 948 25 median median JJ cord-000248-zueoyesj 948 26 foreground foreground NN cord-000248-zueoyesj 948 27 intensity intensity NN cord-000248-zueoyesj 948 28 , , , cord-000248-zueoyesj 948 29 and and CC cord-000248-zueoyesj 948 30 subsequently subsequently RB cord-000248-zueoyesj 948 31 the the DT cord-000248-zueoyesj 948 32 log log NN cord-000248-zueoyesj 948 33 ratios ratio NNS cord-000248-zueoyesj 948 34 of of IN cord-000248-zueoyesj 948 35 cancer cancer NN cord-000248-zueoyesj 948 36 expression expression NN cord-000248-zueoyesj 948 37 to to IN cord-000248-zueoyesj 948 38 benign benign JJ cord-000248-zueoyesj 948 39 expression expression NN cord-000248-zueoyesj 948 40 were be VBD cord-000248-zueoyesj 948 41 computed compute VBN cord-000248-zueoyesj 948 42 . . . cord-000248-zueoyesj 949 1 These these DT cord-000248-zueoyesj 949 2 ratios ratio NNS cord-000248-zueoyesj 949 3 were be VBD cord-000248-zueoyesj 949 4 obtained obtain VBN cord-000248-zueoyesj 949 5 by by IN cord-000248-zueoyesj 949 6 first first RB cord-000248-zueoyesj 949 7 dividing divide VBG cord-000248-zueoyesj 949 8 the the DT cord-000248-zueoyesj 949 9 background background NN cord-000248-zueoyesj 949 10 - - HYPH cord-000248-zueoyesj 949 11 subtracted subtract VBN cord-000248-zueoyesj 949 12 intensities intensity NNS cord-000248-zueoyesj 949 13 ( ( -LRB- cord-000248-zueoyesj 949 14 Prostate Prostate NNP cord-000248-zueoyesj 949 15 Cancer Cancer NNP cord-000248-zueoyesj 949 16 / / , cord-000248-zueoyesj 949 17 Benign benign JJ cord-000248-zueoyesj 949 18 ) ) -RRB- cord-000248-zueoyesj 949 19 and and CC cord-000248-zueoyesj 949 20 then then RB cord-000248-zueoyesj 949 21 taking take VBG cord-000248-zueoyesj 949 22 the the DT cord-000248-zueoyesj 949 23 logarithm logarithm NN cord-000248-zueoyesj 949 24 base base NN cord-000248-zueoyesj 949 25 2 2 CD cord-000248-zueoyesj 949 26 . . . cord-000248-zueoyesj 950 1 In in IN cord-000248-zueoyesj 950 2 the the DT cord-000248-zueoyesj 950 3 case case NN cord-000248-zueoyesj 950 4 that that IN cord-000248-zueoyesj 950 5 the the DT cord-000248-zueoyesj 950 6 median median JJ cord-000248-zueoyesj 950 7 background background NN cord-000248-zueoyesj 950 8 intensity intensity NN cord-000248-zueoyesj 950 9 was be VBD cord-000248-zueoyesj 950 10 greater great JJR cord-000248-zueoyesj 950 11 than than IN cord-000248-zueoyesj 950 12 the the DT cord-000248-zueoyesj 950 13 median median JJ cord-000248-zueoyesj 950 14 foreground foreground NN cord-000248-zueoyesj 950 15 intensity intensity NN cord-000248-zueoyesj 950 16 , , , cord-000248-zueoyesj 950 17 the the DT cord-000248-zueoyesj 950 18 spot spot NN cord-000248-zueoyesj 950 19 was be VBD cord-000248-zueoyesj 950 20 considered consider VBN cord-000248-zueoyesj 950 21 missing miss VBG cord-000248-zueoyesj 950 22 . . . cord-000248-zueoyesj 951 1 We -PRON- PRP cord-000248-zueoyesj 951 2 refer refer VBP cord-000248-zueoyesj 951 3 to to IN cord-000248-zueoyesj 951 4 the the DT cord-000248-zueoyesj 951 5 original original JJ cord-000248-zueoyesj 951 6 publication publication NN cord-000248-zueoyesj 951 7 for for IN cord-000248-zueoyesj 951 8 the the DT cord-000248-zueoyesj 951 9 other other JJ cord-000248-zueoyesj 951 10 aspects aspect NNS cord-000248-zueoyesj 951 11 of of IN cord-000248-zueoyesj 951 12 imputation imputation NN cord-000248-zueoyesj 951 13 , , , cord-000248-zueoyesj 951 14 spot spot NN cord-000248-zueoyesj 951 15 quality quality NN cord-000248-zueoyesj 951 16 and and CC cord-000248-zueoyesj 951 17 filtering filtering NN cord-000248-zueoyesj 951 18 , , , cord-000248-zueoyesj 951 19 but but CC cord-000248-zueoyesj 951 20 , , , cord-000248-zueoyesj 951 21 like like UH cord-000248-zueoyesj 951 22 in in IN cord-000248-zueoyesj 951 23 Lapointe Lapointe NNP cord-000248-zueoyesj 951 24 et et FW cord-000248-zueoyesj 951 25 al al NNP cord-000248-zueoyesj 951 26 's 's POS cord-000248-zueoyesj 951 27 study study NN cord-000248-zueoyesj 951 28 , , , cord-000248-zueoyesj 951 29 they -PRON- PRP cord-000248-zueoyesj 951 30 also also RB cord-000248-zueoyesj 951 31 filter filter VBP cord-000248-zueoyesj 951 32 to to TO cord-000248-zueoyesj 951 33 keep keep VB cord-000248-zueoyesj 951 34 informative informative JJ cord-000248-zueoyesj 951 35 ( ( -LRB- cord-000248-zueoyesj 951 36 expression expression NN cord-000248-zueoyesj 951 37 ratios ratio NNS cord-000248-zueoyesj 951 38 of of IN cord-000248-zueoyesj 951 39 benign benign JJ cord-000248-zueoyesj 951 40 versus versus IN cord-000248-zueoyesj 951 41 cancer cancer NN cord-000248-zueoyesj 951 42 should should MD cord-000248-zueoyesj 951 43 at at IN cord-000248-zueoyesj 951 44 least least JJS cord-000248-zueoyesj 951 45 be be VB cord-000248-zueoyesj 951 46 1.5-fold 1.5-fold CD cord-000248-zueoyesj 951 47 or or CC cord-000248-zueoyesj 951 48 greater great JJR cord-000248-zueoyesj 951 49 in in IN cord-000248-zueoyesj 951 50 at at RB cord-000248-zueoyesj 951 51 least least JJS cord-000248-zueoyesj 951 52 half half NN cord-000248-zueoyesj 951 53 of of IN cord-000248-zueoyesj 951 54 one one CD cord-000248-zueoyesj 951 55 of of IN cord-000248-zueoyesj 951 56 the the DT cord-000248-zueoyesj 951 57 Gleason Gleason NNP cord-000248-zueoyesj 951 58 groups group NNS cord-000248-zueoyesj 951 59 as as IN cord-000248-zueoyesj 951 60 one one CD cord-000248-zueoyesj 951 61 of of IN cord-000248-zueoyesj 951 62 the the DT cord-000248-zueoyesj 951 63 selection selection NN cord-000248-zueoyesj 951 64 criteria criterion NNS cord-000248-zueoyesj 951 65 ) ) -RRB- cord-000248-zueoyesj 951 66 . . . cord-000248-zueoyesj 952 1 Shannon Shannon NNP cord-000248-zueoyesj 952 2 Entropy Entropy NNP cord-000248-zueoyesj 952 3 . . . cord-000248-zueoyesj 953 1 In in IN cord-000248-zueoyesj 953 2 many many JJ cord-000248-zueoyesj 953 3 circumstances circumstance NNS cord-000248-zueoyesj 953 4 , , , cord-000248-zueoyesj 953 5 experimental experimental JJ cord-000248-zueoyesj 953 6 measurements measurement NNS cord-000248-zueoyesj 953 7 are be VBP cord-000248-zueoyesj 953 8 associated associate VBN cord-000248-zueoyesj 953 9 with with IN cord-000248-zueoyesj 953 10 the the DT cord-000248-zueoyesj 953 11 accumulation accumulation NN cord-000248-zueoyesj 953 12 of of IN cord-000248-zueoyesj 953 13 individual individual JJ cord-000248-zueoyesj 953 14 results result NNS cord-000248-zueoyesj 953 15 which which WDT cord-000248-zueoyesj 953 16 , , , cord-000248-zueoyesj 953 17 ultimately ultimately RB cord-000248-zueoyesj 953 18 , , , cord-000248-zueoyesj 953 19 qualitatively qualitatively RB cord-000248-zueoyesj 953 20 and and CC cord-000248-zueoyesj 953 21 quantitatively quantitatively RB cord-000248-zueoyesj 953 22 characterized characterize VBN cord-000248-zueoyesj 953 23 our -PRON- PRP$ cord-000248-zueoyesj 953 24 experimental experimental JJ cord-000248-zueoyesj 953 25 observations observation NNS cord-000248-zueoyesj 953 26 . . . cord-000248-zueoyesj 954 1 The the DT cord-000248-zueoyesj 954 2 presence presence NN cord-000248-zueoyesj 954 3 ( ( -LRB- cord-000248-zueoyesj 954 4 or or CC cord-000248-zueoyesj 954 5 absence absence NN cord-000248-zueoyesj 954 6 ) ) -RRB- cord-000248-zueoyesj 954 7 of of IN cord-000248-zueoyesj 954 8 a a DT cord-000248-zueoyesj 954 9 particular particular JJ cord-000248-zueoyesj 954 10 result result NN cord-000248-zueoyesj 954 11 of of IN cord-000248-zueoyesj 954 12 an an DT cord-000248-zueoyesj 954 13 individual individual JJ cord-000248-zueoyesj 954 14 experimental experimental JJ cord-000248-zueoyesj 954 15 measure measure NN cord-000248-zueoyesj 954 16 is be VBZ cord-000248-zueoyesj 954 17 called call VBN cord-000248-zueoyesj 954 18 an an DT cord-000248-zueoyesj 954 19 event event NN cord-000248-zueoyesj 954 20 . . . cord-000248-zueoyesj 955 1 An an DT cord-000248-zueoyesj 955 2 event event NN cord-000248-zueoyesj 955 3 which which WDT cord-000248-zueoyesj 955 4 can can MD cord-000248-zueoyesj 955 5 take take VB cord-000248-zueoyesj 955 6 one one CD cord-000248-zueoyesj 955 7 of of IN cord-000248-zueoyesj 955 8 several several JJ cord-000248-zueoyesj 955 9 possible possible JJ cord-000248-zueoyesj 955 10 values value NNS cord-000248-zueoyesj 955 11 is be VBZ cord-000248-zueoyesj 955 12 called call VBN cord-000248-zueoyesj 955 13 a a DT cord-000248-zueoyesj 955 14 random random JJ cord-000248-zueoyesj 955 15 variable variable NN cord-000248-zueoyesj 955 16 . . . cord-000248-zueoyesj 956 1 Analogously analogously RB cord-000248-zueoyesj 956 2 , , , cord-000248-zueoyesj 956 3 a a DT cord-000248-zueoyesj 956 4 random random JJ cord-000248-zueoyesj 956 5 event event NN cord-000248-zueoyesj 956 6 is be VBZ cord-000248-zueoyesj 956 7 an an DT cord-000248-zueoyesj 956 8 event event NN cord-000248-zueoyesj 956 9 that that WDT cord-000248-zueoyesj 956 10 can can MD cord-000248-zueoyesj 956 11 either either CC cord-000248-zueoyesj 956 12 fail fail VB cord-000248-zueoyesj 956 13 to to TO cord-000248-zueoyesj 956 14 happen happen VB cord-000248-zueoyesj 956 15 , , , cord-000248-zueoyesj 956 16 or or CC cord-000248-zueoyesj 956 17 happens happen VBZ cord-000248-zueoyesj 956 18 , , , cord-000248-zueoyesj 956 19 as as IN cord-000248-zueoyesj 956 20 a a DT cord-000248-zueoyesj 956 21 result result NN cord-000248-zueoyesj 956 22 of of IN cord-000248-zueoyesj 956 23 an an DT cord-000248-zueoyesj 956 24 experiment experiment NN cord-000248-zueoyesj 956 25 . . . cord-000248-zueoyesj 957 1 An an DT cord-000248-zueoyesj 957 2 event event NN cord-000248-zueoyesj 957 3 is be VBZ cord-000248-zueoyesj 957 4 certain certain JJ cord-000248-zueoyesj 957 5 if if IN cord-000248-zueoyesj 957 6 it -PRON- PRP cord-000248-zueoyesj 957 7 can can MD cord-000248-zueoyesj 957 8 not not RB cord-000248-zueoyesj 957 9 fail fail VB cord-000248-zueoyesj 957 10 to to TO cord-000248-zueoyesj 957 11 happen happen VB cord-000248-zueoyesj 957 12 and and CC cord-000248-zueoyesj 957 13 it -PRON- PRP cord-000248-zueoyesj 957 14 is be VBZ cord-000248-zueoyesj 957 15 said say VBN cord-000248-zueoyesj 957 16 to to TO cord-000248-zueoyesj 957 17 be be VB cord-000248-zueoyesj 957 18 impossible impossible JJ cord-000248-zueoyesj 957 19 if if IN cord-000248-zueoyesj 957 20 it -PRON- PRP cord-000248-zueoyesj 957 21 can can MD cord-000248-zueoyesj 957 22 never never RB cord-000248-zueoyesj 957 23 happen happen VB cord-000248-zueoyesj 957 24 . . . cord-000248-zueoyesj 958 1 Following follow VBG cord-000248-zueoyesj 958 2 Andreyev Andreyev NNP cord-000248-zueoyesj 958 3 [ [ -LRB- cord-000248-zueoyesj 958 4 794 794 CD cord-000248-zueoyesj 958 5 ] ] -RRB- cord-000248-zueoyesj 958 6 , , , cord-000248-zueoyesj 958 7 we -PRON- PRP cord-000248-zueoyesj 958 8 will will MD cord-000248-zueoyesj 958 9 define define VB cord-000248-zueoyesj 958 10 the the DT cord-000248-zueoyesj 958 11 probability probability NN cord-000248-zueoyesj 958 12 p(x p(x NNP cord-000248-zueoyesj 958 13 ) ) -RRB- cord-000248-zueoyesj 958 14 of of IN cord-000248-zueoyesj 958 15 an an DT cord-000248-zueoyesj 958 16 event event NN cord-000248-zueoyesj 959 1 x x LS cord-000248-zueoyesj 959 2 , , , cord-000248-zueoyesj 959 3 as as IN cord-000248-zueoyesj 959 4 the the DT cord-000248-zueoyesj 959 5 theoretical theoretical JJ cord-000248-zueoyesj 959 6 frequency frequency NN cord-000248-zueoyesj 959 7 of of IN cord-000248-zueoyesj 959 8 the the DT cord-000248-zueoyesj 959 9 event event NN cord-000248-zueoyesj 959 10 x x SYM cord-000248-zueoyesj 959 11 about about IN cord-000248-zueoyesj 959 12 which which WDT cord-000248-zueoyesj 959 13 the the DT cord-000248-zueoyesj 959 14 actual actual JJ cord-000248-zueoyesj 959 15 frequency frequency NN cord-000248-zueoyesj 959 16 occurrence occurrence NN cord-000248-zueoyesj 959 17 of of IN cord-000248-zueoyesj 959 18 the the DT cord-000248-zueoyesj 959 19 event event NN cord-000248-zueoyesj 959 20 shows show VBZ cord-000248-zueoyesj 959 21 a a DT cord-000248-zueoyesj 959 22 tendency tendency NN cord-000248-zueoyesj 959 23 to to TO cord-000248-zueoyesj 959 24 fluctuate fluctuate VB cord-000248-zueoyesj 959 25 as as IN cord-000248-zueoyesj 959 26 the the DT cord-000248-zueoyesj 959 27 experiment experiment NN cord-000248-zueoyesj 959 28 is be VBZ cord-000248-zueoyesj 959 29 repeated repeat VBN cord-000248-zueoyesj 959 30 many many JJ cord-000248-zueoyesj 959 31 times time NNS cord-000248-zueoyesj 959 32 . . . cord-000248-zueoyesj 960 1 The the DT cord-000248-zueoyesj 960 2 Shannon Shannon NNP cord-000248-zueoyesj 960 3 information information NN cord-000248-zueoyesj 960 4 content content NN cord-000248-zueoyesj 960 5 of of IN cord-000248-zueoyesj 960 6 an an DT cord-000248-zueoyesj 960 7 event event NN cord-000248-zueoyesj 960 8 x x NN cord-000248-zueoyesj 960 9 ( ( -LRB- cord-000248-zueoyesj 960 10 or or CC cord-000248-zueoyesj 960 11 the the DT cord-000248-zueoyesj 960 12 surprisal surprisal NN cord-000248-zueoyesj 960 13 of of IN cord-000248-zueoyesj 960 14 an an DT cord-000248-zueoyesj 960 15 event event NN cord-000248-zueoyesj 961 1 x x LS cord-000248-zueoyesj 961 2 , , , cord-000248-zueoyesj 961 3 [ [ -LRB- cord-000248-zueoyesj 961 4 795 795 CD cord-000248-zueoyesj 961 5 ] ] -RRB- cord-000248-zueoyesj 961 6 ) ) -RRB- cord-000248-zueoyesj 961 7 , , , cord-000248-zueoyesj 961 8 is be VBZ cord-000248-zueoyesj 961 9 defined define VBN cord-000248-zueoyesj 961 10 as as IN cord-000248-zueoyesj 961 11 h(x)~log h(x)~log NNP cord-000248-zueoyesj 961 12 2 2 CD cord-000248-zueoyesj 961 13 1 1 CD cord-000248-zueoyesj 961 14 p(x p(x NNP cord-000248-zueoyesj 961 15 ) ) -RRB- cord-000248-zueoyesj 962 1 Following follow VBG cord-000248-zueoyesj 962 2 McKay McKay NNP cord-000248-zueoyesj 962 3 [ [ -LRB- cord-000248-zueoyesj 962 4 796 796 CD cord-000248-zueoyesj 962 5 ] ] -RRB- cord-000248-zueoyesj 962 6 , , . cord-000248-zueoyesj 963 1 an an DT cord-000248-zueoyesj 963 2 ensamble ensamble NN cord-000248-zueoyesj 963 3 X X NNP cord-000248-zueoyesj 963 4 is be VBZ cord-000248-zueoyesj 963 5 a a DT cord-000248-zueoyesj 963 6 triple triple JJ cord-000248-zueoyesj 963 7 ( ( -LRB- cord-000248-zueoyesj 963 8 x x SYM cord-000248-zueoyesj 963 9 , , , cord-000248-zueoyesj 963 10 A A NNP cord-000248-zueoyesj 963 11 X x NN cord-000248-zueoyesj 963 12 , , , cord-000248-zueoyesj 963 13 P p NN cord-000248-zueoyesj 963 14 X X NNP cord-000248-zueoyesj 963 15 ) ) -RRB- cord-000248-zueoyesj 963 16 , , , cord-000248-zueoyesj 963 17 where where WRB cord-000248-zueoyesj 963 18 x x NN cord-000248-zueoyesj 963 19 is be VBZ cord-000248-zueoyesj 963 20 the the DT cord-000248-zueoyesj 963 21 value value NN cord-000248-zueoyesj 963 22 of of IN cord-000248-zueoyesj 963 23 a a DT cord-000248-zueoyesj 963 24 random random JJ cord-000248-zueoyesj 963 25 variable variable NN cord-000248-zueoyesj 963 26 , , , cord-000248-zueoyesj 963 27 which which WDT cord-000248-zueoyesj 963 28 takes take VBZ cord-000248-zueoyesj 963 29 on on RP cord-000248-zueoyesj 963 30 one one CD cord-000248-zueoyesj 963 31 of of IN cord-000248-zueoyesj 963 32 a a DT cord-000248-zueoyesj 963 33 set set NN cord-000248-zueoyesj 963 34 of of IN cord-000248-zueoyesj 963 35 possible possible JJ cord-000248-zueoyesj 963 36 values value NNS cord-000248-zueoyesj 963 37 , , , cord-000248-zueoyesj 963 38 A a NN cord-000248-zueoyesj 963 39 X x NN cord-000248-zueoyesj 963 40 ~ ~ NN cord-000248-zueoyesj 963 41 f f XX cord-000248-zueoyesj 964 1 a a DT cord-000248-zueoyesj 964 2 1 1 CD cord-000248-zueoyesj 964 3 , , , cord-000248-zueoyesj 964 4 a a DT cord-000248-zueoyesj 964 5 2 2 CD cord-000248-zueoyesj 964 6 , , , cord-000248-zueoyesj 964 7 : : : cord-000248-zueoyesj 964 8 : : : cord-000248-zueoyesj 964 9 : : : cord-000248-zueoyesj 964 10 , , , cord-000248-zueoyesj 964 11 a a DT cord-000248-zueoyesj 964 12 i i NN cord-000248-zueoyesj 964 13 , , , cord-000248-zueoyesj 964 14 : : : cord-000248-zueoyesj 964 15 : : : cord-000248-zueoyesj 964 16 : : : cord-000248-zueoyesj 964 17 , , , cord-000248-zueoyesj 964 18 a a DT cord-000248-zueoyesj 964 19 N n CD cord-000248-zueoyesj 964 20 g g NN cord-000248-zueoyesj 964 21 , , , cord-000248-zueoyesj 964 22 having have VBG cord-000248-zueoyesj 964 23 probabilities probability NNS cord-000248-zueoyesj 964 24 P p NN cord-000248-zueoyesj 964 25 X x NN cord-000248-zueoyesj 964 26 ~ ~ NN cord-000248-zueoyesj 964 27 f f NN cord-000248-zueoyesj 964 28 p p NN cord-000248-zueoyesj 964 29 1 1 CD cord-000248-zueoyesj 964 30 , , , cord-000248-zueoyesj 964 31 p p NN cord-000248-zueoyesj 964 32 2 2 CD cord-000248-zueoyesj 964 33 , , , cord-000248-zueoyesj 964 34 : : : cord-000248-zueoyesj 964 35 : : : cord-000248-zueoyesj 965 1 : : : cord-000248-zueoyesj 965 2 , , , cord-000248-zueoyesj 965 3 p p NN cord-000248-zueoyesj 965 4 N n NN cord-000248-zueoyesj 965 5 g g NN cord-000248-zueoyesj 965 6 , , , cord-000248-zueoyesj 965 7 with with IN cord-000248-zueoyesj 965 8 p(x p(x NNPS cord-000248-zueoyesj 965 9 ~ ~ NFP cord-000248-zueoyesj 965 10 a a DT cord-000248-zueoyesj 965 11 i i NN cord-000248-zueoyesj 965 12 ) ) -RRB- cord-000248-zueoyesj 965 13 ~p ~p . cord-000248-zueoyesj 966 1 i i PRP cord-000248-zueoyesj 966 2 , , , cord-000248-zueoyesj 966 3 p p NN cord-000248-zueoyesj 966 4 i i NN cord-000248-zueoyesj 966 5 § § NN cord-000248-zueoyesj 966 6 0 0 NFP cord-000248-zueoyesj 966 7 and and CC cord-000248-zueoyesj 966 8 X X VBZ cord-000248-zueoyesj 966 9 a a DT cord-000248-zueoyesj 966 10 i i NN cord-000248-zueoyesj 966 11 [ [ -LRB- cord-000248-zueoyesj 966 12 A a NN cord-000248-zueoyesj 966 13 X x NN cord-000248-zueoyesj 966 14 p(x p(x NN cord-000248-zueoyesj 966 15 ~ ~ NFP cord-000248-zueoyesj 966 16 a a DT cord-000248-zueoyesj 966 17 i i NN cord-000248-zueoyesj 966 18 ) ) -RRB- cord-000248-zueoyesj 966 19 ~1 ~1 NNP cord-000248-zueoyesj 966 20 . . . cord-000248-zueoyesj 967 1 The the DT cord-000248-zueoyesj 967 2 Shannon Shannon NNP cord-000248-zueoyesj 967 3 Entropy Entropy NNP cord-000248-zueoyesj 967 4 of of IN cord-000248-zueoyesj 967 5 an an DT cord-000248-zueoyesj 967 6 ensemble ensemble NN cord-000248-zueoyesj 967 7 X x NN cord-000248-zueoyesj 967 8 ( ( -LRB- cord-000248-zueoyesj 967 9 also also RB cord-000248-zueoyesj 967 10 known know VBN cord-000248-zueoyesj 967 11 as as IN cord-000248-zueoyesj 967 12 the the DT cord-000248-zueoyesj 967 13 uncertainty uncertainty NN cord-000248-zueoyesj 967 14 of of IN cord-000248-zueoyesj 967 15 X X NNP cord-000248-zueoyesj 967 16 ) ) -RRB- cord-000248-zueoyesj 967 17 , , , cord-000248-zueoyesj 967 18 denoted denote VBN cord-000248-zueoyesj 967 19 as as IN cord-000248-zueoyesj 967 20 H[X H[X NNP cord-000248-zueoyesj 967 21 ] ] -RRB- cord-000248-zueoyesj 967 22 , , , cord-000248-zueoyesj 967 23 is be VBZ cord-000248-zueoyesj 967 24 defined define VBN cord-000248-zueoyesj 967 25 to to TO cord-000248-zueoyesj 967 26 be be VB cord-000248-zueoyesj 967 27 the the DT cord-000248-zueoyesj 967 28 average average JJ cord-000248-zueoyesj 967 29 Shannon Shannon NNP cord-000248-zueoyesj 967 30 information information NN cord-000248-zueoyesj 967 31 content content NN cord-000248-zueoyesj 967 32 . . . cord-000248-zueoyesj 968 1 It -PRON- PRP cord-000248-zueoyesj 968 2 is be VBZ cord-000248-zueoyesj 968 3 the the DT cord-000248-zueoyesj 968 4 average average JJ cord-000248-zueoyesj 968 5 expected expect VBN cord-000248-zueoyesj 968 6 surprisal surprisal NNP cord-000248-zueoyesj 968 7 for for IN cord-000248-zueoyesj 968 8 an an DT cord-000248-zueoyesj 968 9 infinitely infinitely RB cord-000248-zueoyesj 968 10 long long JJ cord-000248-zueoyesj 968 11 series series NN cord-000248-zueoyesj 968 12 of of IN cord-000248-zueoyesj 968 13 experiments experiment NNS cord-000248-zueoyesj 968 14 . . . cord-000248-zueoyesj 969 1 We -PRON- PRP cord-000248-zueoyesj 969 2 use use VBP cord-000248-zueoyesj 969 3 the the DT cord-000248-zueoyesj 969 4 theoretical theoretical JJ cord-000248-zueoyesj 969 5 frequencies frequency NNS cord-000248-zueoyesj 969 6 to to TO cord-000248-zueoyesj 969 7 compute compute VB cord-000248-zueoyesj 969 8 this this DT cord-000248-zueoyesj 969 9 average average NN cord-000248-zueoyesj 969 10 , , , cord-000248-zueoyesj 969 11 and and CC cord-000248-zueoyesj 969 12 then then RB cord-000248-zueoyesj 969 13 we -PRON- PRP cord-000248-zueoyesj 969 14 have have VBP cord-000248-zueoyesj 969 15 Suppose Suppose VBN cord-000248-zueoyesj 969 16 that that IN cord-000248-zueoyesj 969 17 we -PRON- PRP cord-000248-zueoyesj 969 18 have have VBP cord-000248-zueoyesj 969 19 a a DT cord-000248-zueoyesj 969 20 fair fair JJ cord-000248-zueoyesj 969 21 dice dice NN cord-000248-zueoyesj 969 22 , , , cord-000248-zueoyesj 969 23 the the DT cord-000248-zueoyesj 969 24 theoretical theoretical JJ cord-000248-zueoyesj 969 25 frequency frequency NN cord-000248-zueoyesj 969 26 of of IN cord-000248-zueoyesj 969 27 an an DT cord-000248-zueoyesj 969 28 event event NN cord-000248-zueoyesj 969 29 ' ' `` cord-000248-zueoyesj 969 30 the the DT cord-000248-zueoyesj 969 31 dice dice NN cord-000248-zueoyesj 969 32 shows show VBZ cord-000248-zueoyesj 969 33 a a DT cord-000248-zueoyesj 969 34 three three CD cord-000248-zueoyesj 969 35 ' ' '' cord-000248-zueoyesj 969 36 is be VBZ cord-000248-zueoyesj 969 37 1/6 1/6 DT cord-000248-zueoyesj 969 38 , , , cord-000248-zueoyesj 969 39 ( ( -LRB- cord-000248-zueoyesj 969 40 if if IN cord-000248-zueoyesj 969 41 the the DT cord-000248-zueoyesj 969 42 dice dice NN cord-000248-zueoyesj 969 43 is be VBZ cord-000248-zueoyesj 969 44 assumed assume VBN cord-000248-zueoyesj 969 45 fair fair JJ cord-000248-zueoyesj 969 46 , , , cord-000248-zueoyesj 969 47 the the DT cord-000248-zueoyesj 969 48 theoretical theoretical JJ cord-000248-zueoyesj 969 49 frequency frequency NN cord-000248-zueoyesj 969 50 is be VBZ cord-000248-zueoyesj 969 51 the the DT cord-000248-zueoyesj 969 52 same same JJ cord-000248-zueoyesj 969 53 for for IN cord-000248-zueoyesj 969 54 any any DT cord-000248-zueoyesj 969 55 number number NN cord-000248-zueoyesj 969 56 from from IN cord-000248-zueoyesj 969 57 1 1 CD cord-000248-zueoyesj 969 58 to to IN cord-000248-zueoyesj 969 59 6 6 CD cord-000248-zueoyesj 969 60 ) ) -RRB- cord-000248-zueoyesj 969 61 . . . cord-000248-zueoyesj 970 1 In in IN cord-000248-zueoyesj 970 2 that that DT cord-000248-zueoyesj 970 3 case case NN cord-000248-zueoyesj 970 4 a a DT cord-000248-zueoyesj 970 5 hypothetical hypothetical JJ cord-000248-zueoyesj 970 6 experimentalist experimentalist NN cord-000248-zueoyesj 970 7 guessing guessing NN cord-000248-zueoyesj 970 8 will will MD cord-000248-zueoyesj 970 9 have have VB cord-000248-zueoyesj 970 10 an an DT cord-000248-zueoyesj 970 11 average average JJ cord-000248-zueoyesj 970 12 expected expect VBN cord-000248-zueoyesj 970 13 surprise surprise NN cord-000248-zueoyesj 970 14 of of IN cord-000248-zueoyesj 970 15 H[X H[X NNP cord-000248-zueoyesj 970 16 ] ] -RRB- cord-000248-zueoyesj 971 1 = = SYM cord-000248-zueoyesj 971 2 log log NN cord-000248-zueoyesj 971 3 2 2 CD cord-000248-zueoyesj 971 4 ( ( -LRB- cord-000248-zueoyesj 971 5 6 6 CD cord-000248-zueoyesj 971 6 ) ) -RRB- cord-000248-zueoyesj 971 7 . . . cord-000248-zueoyesj 972 1 We -PRON- PRP cord-000248-zueoyesj 972 2 note note VBP cord-000248-zueoyesj 972 3 the the DT cord-000248-zueoyesj 972 4 two two CD cord-000248-zueoyesj 972 5 natural natural JJ cord-000248-zueoyesj 972 6 bounds bound NNS cord-000248-zueoyesj 972 7 that that WDT cord-000248-zueoyesj 972 8 the the DT cord-000248-zueoyesj 972 9 entropy entropy NN cord-000248-zueoyesj 972 10 can can MD cord-000248-zueoyesj 972 11 have have VB cord-000248-zueoyesj 972 12 . . . cord-000248-zueoyesj 973 1 The the DT cord-000248-zueoyesj 973 2 Shannon Shannon NNP cord-000248-zueoyesj 973 3 Entropy Entropy NNP cord-000248-zueoyesj 973 4 of of IN cord-000248-zueoyesj 973 5 an an DT cord-000248-zueoyesj 973 6 ensemble ensemble NN cord-000248-zueoyesj 973 7 X x NN cord-000248-zueoyesj 973 8 is be VBZ cord-000248-zueoyesj 973 9 always always RB cord-000248-zueoyesj 973 10 greater great JJR cord-000248-zueoyesj 973 11 or or CC cord-000248-zueoyesj 973 12 equal equal JJ cord-000248-zueoyesj 973 13 to to IN cord-000248-zueoyesj 973 14 zero zero CD cord-000248-zueoyesj 973 15 . . . cord-000248-zueoyesj 974 1 It -PRON- PRP cord-000248-zueoyesj 974 2 can can MD cord-000248-zueoyesj 974 3 only only RB cord-000248-zueoyesj 974 4 be be VB cord-000248-zueoyesj 974 5 zero zero CD cord-000248-zueoyesj 974 6 if if IN cord-000248-zueoyesj 974 7 p(x p(x NNPS cord-000248-zueoyesj 974 8 ~ ~ NFP cord-000248-zueoyesj 974 9 a a DT cord-000248-zueoyesj 974 10 i i NN cord-000248-zueoyesj 974 11 ) ) -RRB- cord-000248-zueoyesj 974 12 ~1 ~1 NFP cord-000248-zueoyesj 974 13 for for IN cord-000248-zueoyesj 974 14 only only RB cord-000248-zueoyesj 974 15 one one CD cord-000248-zueoyesj 974 16 of of IN cord-000248-zueoyesj 974 17 the the DT cord-000248-zueoyesj 974 18 N n CD cord-000248-zueoyesj 974 19 elements element NNS cord-000248-zueoyesj 974 20 of of IN cord-000248-zueoyesj 974 21 A a NN cord-000248-zueoyesj 974 22 X x NN cord-000248-zueoyesj 974 23 ~ ~ NN cord-000248-zueoyesj 974 24 f f NN cord-000248-zueoyesj 974 25 a a DT cord-000248-zueoyesj 974 26 1 1 CD cord-000248-zueoyesj 974 27 , , , cord-000248-zueoyesj 974 28 a a DT cord-000248-zueoyesj 974 29 2 2 CD cord-000248-zueoyesj 974 30 , , , cord-000248-zueoyesj 974 31 : : : cord-000248-zueoyesj 974 32 : : : cord-000248-zueoyesj 974 33 : : : cord-000248-zueoyesj 974 34 , , , cord-000248-zueoyesj 974 35 a a DT cord-000248-zueoyesj 974 36 i i NN cord-000248-zueoyesj 974 37 , , , cord-000248-zueoyesj 974 38 : : : cord-000248-zueoyesj 974 39 : : : cord-000248-zueoyesj 974 40 : : : cord-000248-zueoyesj 974 41 , , , cord-000248-zueoyesj 974 42 a a DT cord-000248-zueoyesj 974 43 N n CD cord-000248-zueoyesj 974 44 g. g. NN cord-000248-zueoyesj 975 1 On on IN cord-000248-zueoyesj 975 2 the the DT cord-000248-zueoyesj 975 3 other other JJ cord-000248-zueoyesj 975 4 hand hand NN cord-000248-zueoyesj 975 5 , , , cord-000248-zueoyesj 975 6 the the DT cord-000248-zueoyesj 975 7 Shannon Shannon NNP cord-000248-zueoyesj 975 8 Entropy Entropy NNP cord-000248-zueoyesj 975 9 is be VBZ cord-000248-zueoyesj 975 10 maximized maximize VBN cord-000248-zueoyesj 975 11 in in IN cord-000248-zueoyesj 975 12 the the DT cord-000248-zueoyesj 975 13 case case NN cord-000248-zueoyesj 975 14 that that IN cord-000248-zueoyesj 975 15 p(x p(x UH cord-000248-zueoyesj 975 16 ~ ~ NFP cord-000248-zueoyesj 975 17 a a DT cord-000248-zueoyesj 975 18 i i NN cord-000248-zueoyesj 975 19 ) ) -RRB- cord-000248-zueoyesj 976 1 ~1 ~1 LS cord-000248-zueoyesj 977 1 = = SYM cord-000248-zueoyesj 977 2 N. n. NN cord-000248-zueoyesj 978 1 This this DT cord-000248-zueoyesj 978 2 is be VBZ cord-000248-zueoyesj 978 3 the the DT cord-000248-zueoyesj 978 4 so so RB cord-000248-zueoyesj 978 5 - - HYPH cord-000248-zueoyesj 978 6 called call VBN cord-000248-zueoyesj 978 7 ' ' '' cord-000248-zueoyesj 978 8 ' ' `` cord-000248-zueoyesj 978 9 equiprobable equiprobable JJ cord-000248-zueoyesj 978 10 distribution distribution NN cord-000248-zueoyesj 978 11 ' ' '' cord-000248-zueoyesj 978 12 ' ' '' cord-000248-zueoyesj 978 13 , , , cord-000248-zueoyesj 978 14 a a DT cord-000248-zueoyesj 978 15 uniform uniform JJ cord-000248-zueoyesj 978 16 probability probability NN cord-000248-zueoyesj 978 17 distribution distribution NN cord-000248-zueoyesj 978 18 over over IN cord-000248-zueoyesj 978 19 the the DT cord-000248-zueoyesj 978 20 finite finite JJ cord-000248-zueoyesj 978 21 set set NN cord-000248-zueoyesj 978 22 . . . cord-000248-zueoyesj 979 1 Transcriptional Transcriptional NNP cord-000248-zueoyesj 979 2 Shannon Shannon NNP cord-000248-zueoyesj 979 3 Entropy Entropy NNP cord-000248-zueoyesj 979 4 . . . cord-000248-zueoyesj 980 1 Let let VB cord-000248-zueoyesj 980 2 f f NNP cord-000248-zueoyesj 980 3 ( ( -LRB- cord-000248-zueoyesj 980 4 j j NNP cord-000248-zueoyesj 980 5 ) ) -RRB- cord-000248-zueoyesj 980 6 i i PRP cord-000248-zueoyesj 980 7 the the DT cord-000248-zueoyesj 980 8 expression expression NN cord-000248-zueoyesj 980 9 value value NN cord-000248-zueoyesj 980 10 of of IN cord-000248-zueoyesj 980 11 probe probe NN cord-000248-zueoyesj 981 1 i i PRP cord-000248-zueoyesj 981 2 ( ( -LRB- cord-000248-zueoyesj 981 3 i i NN cord-000248-zueoyesj 981 4 = = SYM cord-000248-zueoyesj 981 5 1 1 CD cord-000248-zueoyesj 981 6 , , , cord-000248-zueoyesj 981 7 … … NFP cord-000248-zueoyesj 981 8 , , , cord-000248-zueoyesj 981 9 N n CD cord-000248-zueoyesj 981 10 ) ) -RRB- cord-000248-zueoyesj 981 11 on on IN cord-000248-zueoyesj 981 12 sample sample NN cord-000248-zueoyesj 981 13 j j NNP cord-000248-zueoyesj 981 14 ( ( -LRB- cord-000248-zueoyesj 981 15 j j NNP cord-000248-zueoyesj 981 16 = = SYM cord-000248-zueoyesj 981 17 1 1 CD cord-000248-zueoyesj 981 18 , , , cord-000248-zueoyesj 981 19 … … NFP cord-000248-zueoyesj 981 20 , , , cord-000248-zueoyesj 981 21 M M NNP cord-000248-zueoyesj 981 22 ) ) -RRB- cord-000248-zueoyesj 981 23 . . . cord-000248-zueoyesj 982 1 For for IN cord-000248-zueoyesj 982 2 each each DT cord-000248-zueoyesj 982 3 sample sample NN cord-000248-zueoyesj 982 4 j j NN cord-000248-zueoyesj 982 5 we -PRON- PRP cord-000248-zueoyesj 982 6 first first RB cord-000248-zueoyesj 982 7 normalize normalize VBP cord-000248-zueoyesj 982 8 the the DT cord-000248-zueoyesj 982 9 expression expression NN cord-000248-zueoyesj 982 10 values value NNS cord-000248-zueoyesj 982 11 . . . cord-000248-zueoyesj 983 1 We -PRON- PRP cord-000248-zueoyesj 983 2 interpret interpret VBP cord-000248-zueoyesj 983 3 them -PRON- PRP cord-000248-zueoyesj 983 4 as as IN cord-000248-zueoyesj 983 5 the the DT cord-000248-zueoyesj 983 6 theoretical theoretical JJ cord-000248-zueoyesj 983 7 frequency frequency NN cord-000248-zueoyesj 983 8 of of IN cord-000248-zueoyesj 983 9 a a DT cord-000248-zueoyesj 983 10 single single JJ cord-000248-zueoyesj 983 11 hybridization hybridization NN cord-000248-zueoyesj 983 12 event event NN cord-000248-zueoyesj 983 13 . . . cord-000248-zueoyesj 984 1 We -PRON- PRP cord-000248-zueoyesj 984 2 then then RB cord-000248-zueoyesj 984 3 define define VBP cord-000248-zueoyesj 984 4 a a DT cord-000248-zueoyesj 984 5 probability probability NN cord-000248-zueoyesj 984 6 distribution distribution NN cord-000248-zueoyesj 984 7 function function NN cord-000248-zueoyesj 984 8 ( ( -LRB- cord-000248-zueoyesj 984 9 PDF PDF NNP cord-000248-zueoyesj 984 10 ) ) -RRB- cord-000248-zueoyesj 984 11 over over IN cord-000248-zueoyesj 984 12 a a DT cord-000248-zueoyesj 984 13 finite finite JJ cord-000248-zueoyesj 984 14 set set NN cord-000248-zueoyesj 984 15 as as IN cord-000248-zueoyesj 984 16 : : : cord-000248-zueoyesj 985 1 The the DT cord-000248-zueoyesj 985 2 uniform uniform NN cord-000248-zueoyesj 985 3 ( ( -LRB- cord-000248-zueoyesj 985 4 equiprobably equiprobably NNP cord-000248-zueoyesj 985 5 ) ) -RRB- cord-000248-zueoyesj 985 6 distribution distribution NN cord-000248-zueoyesj 985 7 is be VBZ cord-000248-zueoyesj 985 8 defined define VBN cord-000248-zueoyesj 985 9 as as IN cord-000248-zueoyesj 985 10 i i PRP cord-000248-zueoyesj 985 11 Let let VBP cord-000248-zueoyesj 985 12 H h NN cord-000248-zueoyesj 985 13 e e NN cord-000248-zueoyesj 986 1 ~H ~H NFP cord-000248-zueoyesj 986 2 ½P ½P NNP cord-000248-zueoyesj 986 3 e e LS cord-000248-zueoyesj 986 4 ~log ~log NNP cord-000248-zueoyesj 986 5 2 2 CD cord-000248-zueoyesj 986 6 N n CD cord-000248-zueoyesj 986 7 , , , cord-000248-zueoyesj 986 8 then then RB cord-000248-zueoyesj 986 9 in in IN cord-000248-zueoyesj 986 10 this this DT cord-000248-zueoyesj 986 11 paper paper NN cord-000248-zueoyesj 986 12 we -PRON- PRP cord-000248-zueoyesj 986 13 always always RB cord-000248-zueoyesj 986 14 use use VBP cord-000248-zueoyesj 986 15 the the DT cord-000248-zueoyesj 986 16 Normalized Normalized NNP cord-000248-zueoyesj 986 17 Shannon Shannon NNP cord-000248-zueoyesj 986 18 Entropy Entropy NNP cord-000248-zueoyesj 986 19 , , , cord-000248-zueoyesj 986 20 defined define VBN cord-000248-zueoyesj 986 21 as as IN cord-000248-zueoyesj 986 22 : : : cord-000248-zueoyesj 986 23 i i NN cord-000248-zueoyesj 986 24 H h NN cord-000248-zueoyesj 986 25 e e NN cord-000248-zueoyesj 986 26 , , , cord-000248-zueoyesj 986 27 j~1 j~1 NNP cord-000248-zueoyesj 986 28 , , , cord-000248-zueoyesj 986 29 . . . cord-000248-zueoyesj 986 30 . . . cord-000248-zueoyesj 986 31 . . . cord-000248-zueoyesj 987 1 , , , cord-000248-zueoyesj 988 1 M M NNP cord-000248-zueoyesj 989 1 The the DT cord-000248-zueoyesj 989 2 Jensen Jensen NNP cord-000248-zueoyesj 989 3 - - HYPH cord-000248-zueoyesj 989 4 Shannon Shannon NNP cord-000248-zueoyesj 989 5 divergence divergence NN cord-000248-zueoyesj 989 6 and and CC cord-000248-zueoyesj 989 7 the the DT cord-000248-zueoyesj 989 8 Statistical statistical JJ cord-000248-zueoyesj 989 9 complexity complexity NN cord-000248-zueoyesj 989 10 measures measure NNS cord-000248-zueoyesj 989 11 Given give VBN cord-000248-zueoyesj 989 12 a a DT cord-000248-zueoyesj 989 13 probability probability NN cord-000248-zueoyesj 989 14 distribution distribution NN cord-000248-zueoyesj 989 15 function function NN cord-000248-zueoyesj 989 16 over over IN cord-000248-zueoyesj 989 17 a a DT cord-000248-zueoyesj 989 18 discrete discrete JJ cord-000248-zueoyesj 989 19 finite finite JJ cord-000248-zueoyesj 989 20 set set NN cord-000248-zueoyesj 989 21 , , , cord-000248-zueoyesj 989 22 is be VBZ cord-000248-zueoyesj 989 23 then then RB cord-000248-zueoyesj 989 24 straightforward straightforward JJ cord-000248-zueoyesj 989 25 to to TO cord-000248-zueoyesj 989 26 calculate calculate VB cord-000248-zueoyesj 989 27 its -PRON- PRP$ cord-000248-zueoyesj 989 28 Normalized Normalized NNP cord-000248-zueoyesj 989 29 Shannon Shannon NNP cord-000248-zueoyesj 989 30 Entropy Entropy NNP cord-000248-zueoyesj 989 31 if if IN cord-000248-zueoyesj 989 32 we -PRON- PRP cord-000248-zueoyesj 989 33 have have VBP cord-000248-zueoyesj 989 34 the the DT cord-000248-zueoyesj 989 35 theoretical theoretical JJ cord-000248-zueoyesj 989 36 frequencies frequency NNS cord-000248-zueoyesj 989 37 . . . cord-000248-zueoyesj 990 1 Several several JJ cord-000248-zueoyesj 990 2 measures measure NNS cord-000248-zueoyesj 990 3 of of IN cord-000248-zueoyesj 990 4 ' ' '' cord-000248-zueoyesj 990 5 ' ' `` cord-000248-zueoyesj 990 6 complexity complexity NN cord-000248-zueoyesj 990 7 ' ' '' cord-000248-zueoyesj 990 8 ' ' '' cord-000248-zueoyesj 990 9 of of IN cord-000248-zueoyesj 990 10 a a DT cord-000248-zueoyesj 990 11 probability probability NN cord-000248-zueoyesj 990 12 distribution distribution NN cord-000248-zueoyesj 990 13 function function NN cord-000248-zueoyesj 990 14 have have VBP cord-000248-zueoyesj 990 15 been be VBN cord-000248-zueoyesj 990 16 proposed propose VBN cord-000248-zueoyesj 990 17 . . . cord-000248-zueoyesj 991 1 In in IN cord-000248-zueoyesj 991 2 this this DT cord-000248-zueoyesj 991 3 work work NN cord-000248-zueoyesj 991 4 we -PRON- PRP cord-000248-zueoyesj 991 5 have have VBP cord-000248-zueoyesj 991 6 used use VBN cord-000248-zueoyesj 991 7 Statistical Statistical NNP cord-000248-zueoyesj 991 8 Complexity Complexity NNP cord-000248-zueoyesj 991 9 measures measure NNS cord-000248-zueoyesj 991 10 . . . cord-000248-zueoyesj 992 1 All all PDT cord-000248-zueoyesj 992 2 the the DT cord-000248-zueoyesj 992 3 complexity complexity NN cord-000248-zueoyesj 992 4 measures measure NNS cord-000248-zueoyesj 992 5 used use VBN cord-000248-zueoyesj 992 6 in in IN cord-000248-zueoyesj 992 7 this this DT cord-000248-zueoyesj 992 8 work work NN cord-000248-zueoyesj 992 9 are be VBP cord-000248-zueoyesj 992 10 the the DT cord-000248-zueoyesj 992 11 product product NN cord-000248-zueoyesj 992 12 of of IN cord-000248-zueoyesj 992 13 a a DT cord-000248-zueoyesj 992 14 Normalized Normalized NNP cord-000248-zueoyesj 992 15 Shannon Shannon NNP cord-000248-zueoyesj 992 16 Entropy Entropy NNP cord-000248-zueoyesj 992 17 of of IN cord-000248-zueoyesj 992 18 the the DT cord-000248-zueoyesj 992 19 probability probability NN cord-000248-zueoyesj 992 20 distribution distribution NN cord-000248-zueoyesj 992 21 function function NN cord-000248-zueoyesj 992 22 , , , cord-000248-zueoyesj 992 23 and and CC cord-000248-zueoyesj 992 24 a a DT cord-000248-zueoyesj 992 25 divergence divergence NN cord-000248-zueoyesj 992 26 measure measure NN cord-000248-zueoyesj 992 27 to to IN cord-000248-zueoyesj 992 28 a a DT cord-000248-zueoyesj 992 29 reference reference NN cord-000248-zueoyesj 992 30 probability probability NN cord-000248-zueoyesj 992 31 distribution distribution NN cord-000248-zueoyesj 992 32 function function NN cord-000248-zueoyesj 992 33 . . . cord-000248-zueoyesj 993 1 We -PRON- PRP cord-000248-zueoyesj 993 2 follow follow VBP cord-000248-zueoyesj 993 3 earlier early JJR cord-000248-zueoyesj 993 4 proposals proposal NNS cord-000248-zueoyesj 993 5 by by IN cord-000248-zueoyesj 993 6 López López NNP cord-000248-zueoyesj 993 7 - - HYPH cord-000248-zueoyesj 993 8 Ruiz Ruiz NNP cord-000248-zueoyesj 993 9 , , , cord-000248-zueoyesj 993 10 Mancini Mancini NNP cord-000248-zueoyesj 993 11 and and CC cord-000248-zueoyesj 993 12 Calbet Calbet NNP cord-000248-zueoyesj 993 13 who who WP cord-000248-zueoyesj 993 14 first first RB cord-000248-zueoyesj 993 15 introduced introduce VBD cord-000248-zueoyesj 993 16 a a DT cord-000248-zueoyesj 993 17 statistical statistical JJ cord-000248-zueoyesj 993 18 complexity complexity NN cord-000248-zueoyesj 993 19 measure measure NN cord-000248-zueoyesj 993 20 based base VBN cord-000248-zueoyesj 993 21 on on IN cord-000248-zueoyesj 993 22 such such PDT cord-000248-zueoyesj 993 23 a a DT cord-000248-zueoyesj 993 24 product product NN cord-000248-zueoyesj 993 25 in in IN cord-000248-zueoyesj 993 26 [ [ -LRB- cord-000248-zueoyesj 993 27 797 797 CD cord-000248-zueoyesj 993 28 ] ] -RRB- cord-000248-zueoyesj 993 29 . . . cord-000248-zueoyesj 994 1 The the DT cord-000248-zueoyesj 994 2 LMC LMC NNP cord-000248-zueoyesj 994 3 - - HYPH cord-000248-zueoyesj 994 4 Statistical Statistical NNP cord-000248-zueoyesj 994 5 Complexity Complexity NNP cord-000248-zueoyesj 994 6 is be VBZ cord-000248-zueoyesj 994 7 the the DT cord-000248-zueoyesj 994 8 product product NN cord-000248-zueoyesj 994 9 of of IN cord-000248-zueoyesj 994 10 the the DT cord-000248-zueoyesj 994 11 Normalized Normalized NNP cord-000248-zueoyesj 994 12 Shannon Shannon NNP cord-000248-zueoyesj 994 13 Entropy Entropy NNP cord-000248-zueoyesj 994 14 , , , cord-000248-zueoyesj 994 15 H[P H[P NNP cord-000248-zueoyesj 994 16 ] ] -RRB- cord-000248-zueoyesj 994 17 , , , cord-000248-zueoyesj 994 18 times time NNS cord-000248-zueoyesj 994 19 the the DT cord-000248-zueoyesj 994 20 disequilibrium disequilibrium NN cord-000248-zueoyesj 994 21 , , , cord-000248-zueoyesj 994 22 Q[P Q[P NNP cord-000248-zueoyesj 994 23 ] ] -RRB- cord-000248-zueoyesj 994 24 ; ; : cord-000248-zueoyesj 994 25 the the DT cord-000248-zueoyesj 994 26 latter latter JJ cord-000248-zueoyesj 994 27 given give VBN cord-000248-zueoyesj 994 28 by by IN cord-000248-zueoyesj 994 29 the the DT cord-000248-zueoyesj 994 30 Euclidean euclidean JJ cord-000248-zueoyesj 994 31 distance distance NN cord-000248-zueoyesj 994 32 from from IN cord-000248-zueoyesj 994 33 P p NN cord-000248-zueoyesj 994 34 to to IN cord-000248-zueoyesj 994 35 P p NN cord-000248-zueoyesj 994 36 e e NN cord-000248-zueoyesj 994 37 , , , cord-000248-zueoyesj 994 38 the the DT cord-000248-zueoyesj 994 39 uniform uniform JJ cord-000248-zueoyesj 994 40 probability probability NN cord-000248-zueoyesj 994 41 distribution distribution NN cord-000248-zueoyesj 994 42 over over IN cord-000248-zueoyesj 994 43 the the DT cord-000248-zueoyesj 994 44 ensemble ensemble NN cord-000248-zueoyesj 994 45 . . . cord-000248-zueoyesj 995 1 In in IN cord-000248-zueoyesj 995 2 this this DT cord-000248-zueoyesj 995 3 paper paper NN cord-000248-zueoyesj 995 4 we -PRON- PRP cord-000248-zueoyesj 995 5 used use VBD cord-000248-zueoyesj 995 6 a a DT cord-000248-zueoyesj 995 7 later later JJ cord-000248-zueoyesj 995 8 modification modification NN cord-000248-zueoyesj 995 9 which which WDT cord-000248-zueoyesj 995 10 we -PRON- PRP cord-000248-zueoyesj 995 11 refer refer VBP cord-000248-zueoyesj 995 12 as as IN cord-000248-zueoyesj 995 13 the the DT cord-000248-zueoyesj 995 14 MPR MPR NNP cord-000248-zueoyesj 995 15 - - HYPH cord-000248-zueoyesj 995 16 Statistical Statistical NNP cord-000248-zueoyesj 995 17 Complexity Complexity NNP cord-000248-zueoyesj 995 18 [ [ -LRB- cord-000248-zueoyesj 995 19 43 43 CD cord-000248-zueoyesj 995 20 ] ] -RRB- cord-000248-zueoyesj 995 21 which which WDT cord-000248-zueoyesj 995 22 replaces replace VBZ cord-000248-zueoyesj 995 23 the the DT cord-000248-zueoyesj 995 24 Euclidean euclidean JJ cord-000248-zueoyesj 995 25 distance distance NN cord-000248-zueoyesj 995 26 between between IN cord-000248-zueoyesj 995 27 P p NN cord-000248-zueoyesj 995 28 to to IN cord-000248-zueoyesj 995 29 P p NN cord-000248-zueoyesj 995 30 e e NN cord-000248-zueoyesj 995 31 by by IN cord-000248-zueoyesj 995 32 the the DT cord-000248-zueoyesj 995 33 Jensen Jensen NNP cord-000248-zueoyesj 995 34 - - HYPH cord-000248-zueoyesj 995 35 Shannon Shannon NNP cord-000248-zueoyesj 995 36 divergence divergence NN cord-000248-zueoyesj 995 37 [ [ -LRB- cord-000248-zueoyesj 995 38 788 788 CD cord-000248-zueoyesj 995 39 , , , cord-000248-zueoyesj 995 40 798 798 CD cord-000248-zueoyesj 995 41 ] ] -RRB- cord-000248-zueoyesj 995 42 . . . cord-000248-zueoyesj 996 1 The the DT cord-000248-zueoyesj 996 2 Jensen Jensen NNP cord-000248-zueoyesj 996 3 - - HYPH cord-000248-zueoyesj 996 4 Shannon Shannon NNP cord-000248-zueoyesj 996 5 divergence divergence NN cord-000248-zueoyesj 996 6 is be VBZ cord-000248-zueoyesj 996 7 linked link VBN cord-000248-zueoyesj 996 8 in in IN cord-000248-zueoyesj 996 9 physics physics NN cord-000248-zueoyesj 996 10 to to IN cord-000248-zueoyesj 996 11 the the DT cord-000248-zueoyesj 996 12 thermodynamic thermodynamic JJ cord-000248-zueoyesj 996 13 length length NN cord-000248-zueoyesj 996 14 [ [ -LRB- cord-000248-zueoyesj 996 15 799 799 CD cord-000248-zueoyesj 996 16 , , , cord-000248-zueoyesj 996 17 800 800 CD cord-000248-zueoyesj 996 18 , , , cord-000248-zueoyesj 996 19 801 801 CD cord-000248-zueoyesj 996 20 , , , cord-000248-zueoyesj 996 21 802 802 CD cord-000248-zueoyesj 996 22 ] ] -RRB- cord-000248-zueoyesj 996 23 . . . cord-000248-zueoyesj 997 1 We -PRON- PRP cord-000248-zueoyesj 997 2 define define VBP cord-000248-zueoyesj 997 3 the the DT cord-000248-zueoyesj 997 4 MPR MPR NNP cord-000248-zueoyesj 997 5 - - HYPH cord-000248-zueoyesj 997 6 Statistical statistical JJ cord-000248-zueoyesj 997 7 complexity complexity NN cord-000248-zueoyesj 997 8 [ [ -LRB- cord-000248-zueoyesj 997 9 790 790 CD cord-000248-zueoyesj 997 10 ] ] -RRB- cord-000248-zueoyesj 997 11 as as IN cord-000248-zueoyesj 997 12 : : : cord-000248-zueoyesj 997 13 where where WRB cord-000248-zueoyesj 997 14 Q Q NNP cord-000248-zueoyesj 997 15 P P NNP cord-000248-zueoyesj 997 16 ( ( -LRB- cord-000248-zueoyesj 997 17 j j NNP cord-000248-zueoyesj 997 18 ) ) -RRB- cord-000248-zueoyesj 997 19 , , , cord-000248-zueoyesj 997 20 P p NN cord-000248-zueoyesj 997 21 e e NN cord-000248-zueoyesj 997 22 Â â NN cord-000248-zueoyesj 998 1 Ã Ã NNP cord-000248-zueoyesj 998 2 Q Q NNP cord-000248-zueoyesj 998 3 0 0 NN cord-000248-zueoyesj 998 4 J J NNP cord-000248-zueoyesj 998 5 s s NNP cord-000248-zueoyesj 998 6 P P NNP cord-000248-zueoyesj 998 7 ( ( -LRB- cord-000248-zueoyesj 998 8 j j NNP cord-000248-zueoyesj 998 9 ) ) -RRB- cord-000248-zueoyesj 998 10 , , . cord-000248-zueoyesj 999 1 P p NN cord-000248-zueoyesj 999 2 e e NN cord-000248-zueoyesj 999 3 Â â NN cord-000248-zueoyesj 999 4 Ã ã NN cord-000248-zueoyesj 999 5 , , , cord-000248-zueoyesj 999 6 Q q NN cord-000248-zueoyesj 999 7 0 0 NFP cord-000248-zueoyesj 999 8 is be VBZ cord-000248-zueoyesj 999 9 a a DT cord-000248-zueoyesj 999 10 normalization normalization NN cord-000248-zueoyesj 999 11 factor factor NN cord-000248-zueoyesj 999 12 , , , cord-000248-zueoyesj 999 13 and and CC cord-000248-zueoyesj 999 14 J J NNP cord-000248-zueoyesj 999 15 s s NNP cord-000248-zueoyesj 999 16 P P NNP cord-000248-zueoyesj 999 17 ( ( -LRB- cord-000248-zueoyesj 999 18 1 1 CD cord-000248-zueoyesj 999 19 ) ) -RRB- cord-000248-zueoyesj 999 20 , , , cord-000248-zueoyesj 999 21 P p NN cord-000248-zueoyesj 999 22 ( ( -LRB- cord-000248-zueoyesj 999 23 2 2 CD cord-000248-zueoyesj 999 24 ) ) -RRB- cord-000248-zueoyesj 1000 1 Â â NN cord-000248-zueoyesj 1001 1 Ã Ã NNP cord-000248-zueoyesj 1001 2 is be VBZ cord-000248-zueoyesj 1001 3 the the DT cord-000248-zueoyesj 1001 4 Jensen Jensen NNP cord-000248-zueoyesj 1001 5 - - HYPH cord-000248-zueoyesj 1001 6 Shannon Shannon NNP cord-000248-zueoyesj 1001 7 's 's POS cord-000248-zueoyesj 1001 8 divergence divergence NN cord-000248-zueoyesj 1001 9 between between IN cord-000248-zueoyesj 1001 10 two two CD cord-000248-zueoyesj 1001 11 probability probability NN cord-000248-zueoyesj 1001 12 density density NN cord-000248-zueoyesj 1001 13 functions function NNS cord-000248-zueoyesj 1001 14 P p NN cord-000248-zueoyesj 1001 15 ( ( -LRB- cord-000248-zueoyesj 1001 16 1 1 CD cord-000248-zueoyesj 1001 17 ) ) -RRB- cord-000248-zueoyesj 1001 18 and and CC cord-000248-zueoyesj 1001 19 P p NN cord-000248-zueoyesj 1001 20 ( ( -LRB- cord-000248-zueoyesj 1001 21 2 2 CD cord-000248-zueoyesj 1001 22 ) ) -RRB- cord-000248-zueoyesj 1001 23 , , , cord-000248-zueoyesj 1001 24 which which WDT cord-000248-zueoyesj 1001 25 in in IN cord-000248-zueoyesj 1001 26 turn turn NN cord-000248-zueoyesj 1001 27 is be VBZ cord-000248-zueoyesj 1001 28 defined define VBN cord-000248-zueoyesj 1001 29 as as IN cord-000248-zueoyesj 1001 30 J J NNP cord-000248-zueoyesj 1001 31 s s NNP cord-000248-zueoyesj 1001 32 P P NNP cord-000248-zueoyesj 1001 33 ( ( -LRB- cord-000248-zueoyesj 1001 34 1 1 CD cord-000248-zueoyesj 1001 35 ) ) -RRB- cord-000248-zueoyesj 1001 36 , , , cord-000248-zueoyesj 1001 37 P p NN cord-000248-zueoyesj 1001 38 ( ( -LRB- cord-000248-zueoyesj 1001 39 2 2 CD cord-000248-zueoyesj 1001 40 ) ) -RRB- cord-000248-zueoyesj 1002 1 Â â NN cord-000248-zueoyesj 1002 2 Ã ã NN cord-000248-zueoyesj 1002 3 H h NN cord-000248-zueoyesj 1002 4 P p NN cord-000248-zueoyesj 1002 5 ( ( -LRB- cord-000248-zueoyesj 1002 6 1 1 CD cord-000248-zueoyesj 1002 7 ) ) -RRB- cord-000248-zueoyesj 1003 1 zP zp XX cord-000248-zueoyesj 1004 1 ( ( -LRB- cord-000248-zueoyesj 1004 2 2 2 LS cord-000248-zueoyesj 1004 3 ) ) -RRB- cord-000248-zueoyesj 1004 4 2 2 CD cord-000248-zueoyesj 1005 1 In in IN cord-000248-zueoyesj 1005 2 this this DT cord-000248-zueoyesj 1005 3 work work NN cord-000248-zueoyesj 1005 4 , , , cord-000248-zueoyesj 1005 5 in in IN cord-000248-zueoyesj 1005 6 many many JJ cord-000248-zueoyesj 1005 7 cases case NNS cord-000248-zueoyesj 1005 8 we -PRON- PRP cord-000248-zueoyesj 1005 9 compute compute VBP cord-000248-zueoyesj 1005 10 the the DT cord-000248-zueoyesj 1005 11 Jensen Jensen NNP cord-000248-zueoyesj 1005 12 - - HYPH cord-000248-zueoyesj 1005 13 Shannon Shannon NNP cord-000248-zueoyesj 1005 14 divergences divergence NNS cord-000248-zueoyesj 1005 15 of of IN cord-000248-zueoyesj 1005 16 a a DT cord-000248-zueoyesj 1005 17 probability probability NN cord-000248-zueoyesj 1005 18 with with IN cord-000248-zueoyesj 1005 19 a a DT cord-000248-zueoyesj 1005 20 probability probability NN cord-000248-zueoyesj 1005 21 of of IN cord-000248-zueoyesj 1005 22 reference reference NN cord-000248-zueoyesj 1005 23 which which WDT cord-000248-zueoyesj 1005 24 is be VBZ cord-000248-zueoyesj 1005 25 not not RB cord-000248-zueoyesj 1005 26 the the DT cord-000248-zueoyesj 1005 27 uniform uniform JJ cord-000248-zueoyesj 1005 28 probability probability NN cord-000248-zueoyesj 1005 29 distribution distribution NN cord-000248-zueoyesj 1005 30 over over IN cord-000248-zueoyesj 1005 31 the the DT cord-000248-zueoyesj 1005 32 ensemble ensemble NN cord-000248-zueoyesj 1005 33 . . . cord-000248-zueoyesj 1006 1 In in IN cord-000248-zueoyesj 1006 2 general general JJ cord-000248-zueoyesj 1006 3 , , , cord-000248-zueoyesj 1006 4 it -PRON- PRP cord-000248-zueoyesj 1006 5 is be VBZ cord-000248-zueoyesj 1006 6 the the DT cord-000248-zueoyesj 1006 7 average average NN cord-000248-zueoyesj 1006 8 over over IN cord-000248-zueoyesj 1006 9 a a DT cord-000248-zueoyesj 1006 10 subset subset NN cord-000248-zueoyesj 1006 11 of of IN cord-000248-zueoyesj 1006 12 probability probability NN cord-000248-zueoyesj 1006 13 distribution distribution NN cord-000248-zueoyesj 1006 14 functions function NNS cord-000248-zueoyesj 1006 15 which which WDT cord-000248-zueoyesj 1006 16 are be VBP cord-000248-zueoyesj 1006 17 consider consider JJ cord-000248-zueoyesj 1006 18 to to TO cord-000248-zueoyesj 1006 19 be be VB cord-000248-zueoyesj 1006 20 either either CC cord-000248-zueoyesj 1006 21 the the DT cord-000248-zueoyesj 1006 22 ' ' `` cord-000248-zueoyesj 1006 23 ' ' `` cord-000248-zueoyesj 1006 24 initial initial NN cord-000248-zueoyesj 1006 25 ' ' '' cord-000248-zueoyesj 1006 26 ' ' '' cord-000248-zueoyesj 1006 27 of of IN cord-000248-zueoyesj 1006 28 ' ' '' cord-000248-zueoyesj 1006 29 ' ' `` cord-000248-zueoyesj 1006 30 final final JJ cord-000248-zueoyesj 1006 31 ' ' '' cord-000248-zueoyesj 1006 32 ' ' '' cord-000248-zueoyesj 1006 33 states state NNS cord-000248-zueoyesj 1006 34 of of IN cord-000248-zueoyesj 1006 35 interest interest NN cord-000248-zueoyesj 1006 36 . . . cord-000248-zueoyesj 1007 1 Let let VB cord-000248-zueoyesj 1007 2 P p NN cord-000248-zueoyesj 1007 3 ave ave NNP cord-000248-zueoyesj 1007 4 be be VB cord-000248-zueoyesj 1007 5 such such PDT cord-000248-zueoyesj 1007 6 an an DT cord-000248-zueoyesj 1007 7 average average NN cord-000248-zueoyesj 1007 8 , , , cord-000248-zueoyesj 1007 9 then then RB cord-000248-zueoyesj 1007 10 the the DT cord-000248-zueoyesj 1007 11 M M NNP cord-000248-zueoyesj 1007 12 - - HYPH cord-000248-zueoyesj 1007 13 Statistical Statistical NNP cord-000248-zueoyesj 1007 14 Complexity Complexity NNP cord-000248-zueoyesj 1007 15 of of IN cord-000248-zueoyesj 1007 16 a a DT cord-000248-zueoyesj 1007 17 probability probability NN cord-000248-zueoyesj 1007 18 distribution distribution NN cord-000248-zueoyesj 1007 19 function function NN cord-000248-zueoyesj 1007 20 P p NN cord-000248-zueoyesj 1007 21 ( ( -LRB- cord-000248-zueoyesj 1007 22 j j NNP cord-000248-zueoyesj 1007 23 ) ) -RRB- cord-000248-zueoyesj 1007 24 , , , cord-000248-zueoyesj 1007 25 given give VBN cord-000248-zueoyesj 1007 26 a a DT cord-000248-zueoyesj 1007 27 P P NNP cord-000248-zueoyesj 1007 28 ave ave NNP cord-000248-zueoyesj 1007 29 of of IN cord-000248-zueoyesj 1007 30 reference reference NN cord-000248-zueoyesj 1007 31 , , , cord-000248-zueoyesj 1007 32 is be VBZ cord-000248-zueoyesj 1007 33 given give VBN cord-000248-zueoyesj 1007 34 by by IN cord-000248-zueoyesj 1007 35 C C NNP cord-000248-zueoyesj 1007 36 ( ( -LRB- cord-000248-zueoyesj 1007 37 M M NNP cord-000248-zueoyesj 1007 38 ) ) -RRB- cord-000248-zueoyesj 1007 39 P P NNP cord-000248-zueoyesj 1007 40 ( ( -LRB- cord-000248-zueoyesj 1007 41 j j NNP cord-000248-zueoyesj 1007 42 ) ) -RRB- cord-000248-zueoyesj 1007 43 Â â NN cord-000248-zueoyesj 1007 44 Ã ã NN cord-000248-zueoyesj 1008 1 ~H ~H NFP cord-000248-zueoyesj 1008 2 P p NN cord-000248-zueoyesj 1008 3 ( ( -LRB- cord-000248-zueoyesj 1008 4 j j NNP cord-000248-zueoyesj 1008 5 ) ) -RRB- cord-000248-zueoyesj 1008 6 Â â NN cord-000248-zueoyesj 1008 7 Ã Ã NNP cord-000248-zueoyesj 1008 8 : : : cord-000248-zueoyesj 1008 9 J J NNP cord-000248-zueoyesj 1008 10 s s NNP cord-000248-zueoyesj 1008 11 P P NNP cord-000248-zueoyesj 1008 12 ( ( -LRB- cord-000248-zueoyesj 1008 13 j j NNP cord-000248-zueoyesj 1008 14 ) ) -RRB- cord-000248-zueoyesj 1008 15 , , , cord-000248-zueoyesj 1008 16 P P NNP cord-000248-zueoyesj 1008 17 ave ave NNP cord-000248-zueoyesj 1008 18 Â Â NNP cord-000248-zueoyesj 1008 19 Ã Ã NNP cord-000248-zueoyesj 1009 1 An an DT cord-000248-zueoyesj 1009 2 illutrative illutrative JJ cord-000248-zueoyesj 1009 3 example example NN cord-000248-zueoyesj 1009 4 . . . cord-000248-zueoyesj 1010 1 In in IN cord-000248-zueoyesj 1010 2 order order NN cord-000248-zueoyesj 1010 3 to to TO cord-000248-zueoyesj 1010 4 discuss discuss VB cord-000248-zueoyesj 1010 5 a a DT cord-000248-zueoyesj 1010 6 relatively relatively RB cord-000248-zueoyesj 1010 7 simple simple JJ cord-000248-zueoyesj 1010 8 example example NN cord-000248-zueoyesj 1010 9 that that WDT cord-000248-zueoyesj 1010 10 can can MD cord-000248-zueoyesj 1010 11 intuitively intuitively RB cord-000248-zueoyesj 1010 12 provide provide VB cord-000248-zueoyesj 1010 13 a a DT cord-000248-zueoyesj 1010 14 grasp grasp NN cord-000248-zueoyesj 1010 15 of of IN cord-000248-zueoyesj 1010 16 the the DT cord-000248-zueoyesj 1010 17 basic basic JJ cord-000248-zueoyesj 1010 18 mathematical mathematical JJ cord-000248-zueoyesj 1010 19 principles principle NNS cord-000248-zueoyesj 1010 20 of of IN cord-000248-zueoyesj 1010 21 Information information NN cord-000248-zueoyesj 1010 22 Theory Theory NNP cord-000248-zueoyesj 1010 23 we -PRON- PRP cord-000248-zueoyesj 1010 24 present present VBP cord-000248-zueoyesj 1010 25 a a DT cord-000248-zueoyesj 1010 26 hypothetical hypothetical JJ cord-000248-zueoyesj 1010 27 ' ' '' cord-000248-zueoyesj 1010 28 ' ' '' cord-000248-zueoyesj 1010 29 gene gene NN cord-000248-zueoyesj 1010 30 expression expression NN cord-000248-zueoyesj 1010 31 ' ' '' cord-000248-zueoyesj 1010 32 ' ' '' cord-000248-zueoyesj 1010 33 dataset dataset NN cord-000248-zueoyesj 1010 34 involving involve VBG cord-000248-zueoyesj 1010 35 four four CD cord-000248-zueoyesj 1010 36 samples sample NNS cord-000248-zueoyesj 1010 37 each each DT cord-000248-zueoyesj 1010 38 with with IN cord-000248-zueoyesj 1010 39 the the DT cord-000248-zueoyesj 1010 40 expression expression NN cord-000248-zueoyesj 1010 41 of of IN cord-000248-zueoyesj 1010 42 five five CD cord-000248-zueoyesj 1010 43 unique unique JJ cord-000248-zueoyesj 1010 44 probes probe NNS cord-000248-zueoyesj 1010 45 corresponding correspond VBG cord-000248-zueoyesj 1010 46 to to IN cord-000248-zueoyesj 1010 47 five five CD cord-000248-zueoyesj 1010 48 genes gene NNS cord-000248-zueoyesj 1010 49 ( ( -LRB- cord-000248-zueoyesj 1010 50 not not RB cord-000248-zueoyesj 1010 51 necessarily necessarily RB cord-000248-zueoyesj 1010 52 different different JJ cord-000248-zueoyesj 1010 53 ) ) -RRB- cord-000248-zueoyesj 1010 54 as as IN cord-000248-zueoyesj 1010 55 follows follow VBZ cord-000248-zueoyesj 1010 56 in in IN cord-000248-zueoyesj 1010 57 Table Table NNP cord-000248-zueoyesj 1010 58 3 3 CD cord-000248-zueoyesj 1010 59 . . . cord-000248-zueoyesj 1011 1 One one CD cord-000248-zueoyesj 1011 2 of of IN cord-000248-zueoyesj 1011 3 the the DT cord-000248-zueoyesj 1011 4 quantifiers quantifier NNS cord-000248-zueoyesj 1011 5 that that WDT cord-000248-zueoyesj 1011 6 we -PRON- PRP cord-000248-zueoyesj 1011 7 use use VBP cord-000248-zueoyesj 1011 8 in in IN cord-000248-zueoyesj 1011 9 this this DT cord-000248-zueoyesj 1011 10 contribution contribution NN cord-000248-zueoyesj 1011 11 describes describe VBZ cord-000248-zueoyesj 1011 12 a a DT cord-000248-zueoyesj 1011 13 measure measure NN cord-000248-zueoyesj 1011 14 of of IN cord-000248-zueoyesj 1011 15 order order NN cord-000248-zueoyesj 1011 16 for for IN cord-000248-zueoyesj 1011 17 a a DT cord-000248-zueoyesj 1011 18 sample sample NN cord-000248-zueoyesj 1011 19 : : : cord-000248-zueoyesj 1011 20 the the DT cord-000248-zueoyesj 1011 21 Normalized Normalized NNP cord-000248-zueoyesj 1011 22 Shannon Shannon NNP cord-000248-zueoyesj 1011 23 Entropy Entropy NNP cord-000248-zueoyesj 1011 24 also also RB cord-000248-zueoyesj 1011 25 known know VBN cord-000248-zueoyesj 1011 26 as as IN cord-000248-zueoyesj 1011 27 Shannon Shannon NNP cord-000248-zueoyesj 1011 28 Evenness Evenness NNP cord-000248-zueoyesj 1011 29 Index Index NNP cord-000248-zueoyesj 1011 30 [ [ -LRB- cord-000248-zueoyesj 1011 31 803 803 CD cord-000248-zueoyesj 1011 32 ] ] -RRB- cord-000248-zueoyesj 1011 33 . . . cord-000248-zueoyesj 1012 1 This this DT cord-000248-zueoyesj 1012 2 section section NN cord-000248-zueoyesj 1012 3 focuses focus VBZ cord-000248-zueoyesj 1012 4 on on IN cord-000248-zueoyesj 1012 5 this this DT cord-000248-zueoyesj 1012 6 quantifiers quantifier NNS cord-000248-zueoyesj 1012 7 use use VBP cord-000248-zueoyesj 1012 8 and and CC cord-000248-zueoyesj 1012 9 importance importance NN cord-000248-zueoyesj 1012 10 ( ( -LRB- cord-000248-zueoyesj 1012 11 refer refer VB cord-000248-zueoyesj 1012 12 to to IN cord-000248-zueoyesj 1012 13 the the DT cord-000248-zueoyesj 1012 14 ' ' `` cord-000248-zueoyesj 1012 15 Materials material NNS cord-000248-zueoyesj 1012 16 and and CC cord-000248-zueoyesj 1012 17 Methods Methods NNPS cord-000248-zueoyesj 1012 18 ' ' POS cord-000248-zueoyesj 1012 19 section section NN cord-000248-zueoyesj 1012 20 to to TO cord-000248-zueoyesj 1012 21 see see VB cord-000248-zueoyesj 1012 22 how how WRB cord-000248-zueoyesj 1012 23 this this DT cord-000248-zueoyesj 1012 24 measure measure NN cord-000248-zueoyesj 1012 25 is be VBZ cord-000248-zueoyesj 1012 26 calculated calculate VBN cord-000248-zueoyesj 1012 27 ) ) -RRB- cord-000248-zueoyesj 1012 28 . . . cord-000248-zueoyesj 1013 1 In in IN cord-000248-zueoyesj 1013 2 Sample Sample NNP cord-000248-zueoyesj 1013 3 4 4 CD cord-000248-zueoyesj 1013 4 all all DT cord-000248-zueoyesj 1013 5 probes probe NNS cord-000248-zueoyesj 1013 6 have have VBP cord-000248-zueoyesj 1013 7 the the DT cord-000248-zueoyesj 1013 8 same same JJ cord-000248-zueoyesj 1013 9 expression expression NN cord-000248-zueoyesj 1013 10 therefore therefore RB cord-000248-zueoyesj 1013 11 it -PRON- PRP cord-000248-zueoyesj 1013 12 has have VBZ cord-000248-zueoyesj 1013 13 the the DT cord-000248-zueoyesj 1013 14 highest high JJS cord-000248-zueoyesj 1013 15 achievable achievable JJ cord-000248-zueoyesj 1013 16 value value NN cord-000248-zueoyesj 1013 17 of of IN cord-000248-zueoyesj 1013 18 Normalized Normalized NNP cord-000248-zueoyesj 1013 19 Shannon Shannon NNP cord-000248-zueoyesj 1013 20 Entropy Entropy NNP cord-000248-zueoyesj 1013 21 ( ( -LRB- cord-000248-zueoyesj 1013 22 H h NN cord-000248-zueoyesj 1013 23 = = SYM cord-000248-zueoyesj 1013 24 1 1 CD cord-000248-zueoyesj 1013 25 ) ) -RRB- cord-000248-zueoyesj 1013 26 . . . cord-000248-zueoyesj 1014 1 The the DT cord-000248-zueoyesj 1014 2 Normalized Normalized NNP cord-000248-zueoyesj 1014 3 Shannon Shannon NNP cord-000248-zueoyesj 1014 4 Entropy Entropy NNP cord-000248-zueoyesj 1014 5 values value NNS cord-000248-zueoyesj 1014 6 for for IN cord-000248-zueoyesj 1014 7 samples sample NNS cord-000248-zueoyesj 1014 8 1 1 CD cord-000248-zueoyesj 1014 9 and and CC cord-000248-zueoyesj 1014 10 2 2 CD cord-000248-zueoyesj 1014 11 are be VBP cord-000248-zueoyesj 1014 12 the the DT cord-000248-zueoyesj 1014 13 same same JJ cord-000248-zueoyesj 1014 14 ( ( -LRB- cord-000248-zueoyesj 1014 15 H h NN cord-000248-zueoyesj 1014 16 = = SYM cord-000248-zueoyesj 1014 17 0.82 0.82 CD cord-000248-zueoyesj 1014 18 ) ) -RRB- cord-000248-zueoyesj 1014 19 . . . cord-000248-zueoyesj 1015 1 Sample sample NN cord-000248-zueoyesj 1015 2 3 3 CD cord-000248-zueoyesj 1015 3 , , , cord-000248-zueoyesj 1015 4 which which WDT cord-000248-zueoyesj 1015 5 tends tend VBZ cord-000248-zueoyesj 1015 6 to to TO cord-000248-zueoyesj 1015 7 be be VB cord-000248-zueoyesj 1015 8 less less RBR cord-000248-zueoyesj 1015 9 peaked peaked JJ cord-000248-zueoyesj 1015 10 and and CC cord-000248-zueoyesj 1015 11 has have VBZ cord-000248-zueoyesj 1015 12 the the DT cord-000248-zueoyesj 1015 13 two two CD cord-000248-zueoyesj 1015 14 most most RBS cord-000248-zueoyesj 1015 15 significantly significantly RB cord-000248-zueoyesj 1015 16 expressed express VBD cord-000248-zueoyesj 1015 17 genes gene NNS cord-000248-zueoyesj 1015 18 with with IN cord-000248-zueoyesj 1015 19 the the DT cord-000248-zueoyesj 1015 20 same same JJ cord-000248-zueoyesj 1015 21 value value NN cord-000248-zueoyesj 1015 22 , , , cord-000248-zueoyesj 1015 23 has have VBZ cord-000248-zueoyesj 1015 24 a a DT cord-000248-zueoyesj 1015 25 higher high JJR cord-000248-zueoyesj 1015 26 value value NN cord-000248-zueoyesj 1015 27 of of IN cord-000248-zueoyesj 1015 28 Normalized Normalized NNP cord-000248-zueoyesj 1015 29 Shannon Shannon NNP cord-000248-zueoyesj 1015 30 Entropy Entropy NNP cord-000248-zueoyesj 1015 31 ( ( -LRB- cord-000248-zueoyesj 1015 32 H h NN cord-000248-zueoyesj 1015 33 = = SYM cord-000248-zueoyesj 1015 34 0.92 0.92 CD cord-000248-zueoyesj 1015 35 ) ) -RRB- cord-000248-zueoyesj 1015 36 ( ( -LRB- cord-000248-zueoyesj 1015 37 see see VB cord-000248-zueoyesj 1015 38 Figure Figure NNP cord-000248-zueoyesj 1015 39 21 21 CD cord-000248-zueoyesj 1015 40 ) ) -RRB- cord-000248-zueoyesj 1015 41 . . . cord-000248-zueoyesj 1016 1 This this DT cord-000248-zueoyesj 1016 2 simple simple JJ cord-000248-zueoyesj 1016 3 example example NN cord-000248-zueoyesj 1016 4 shows show VBZ cord-000248-zueoyesj 1016 5 that that IN cord-000248-zueoyesj 1016 6 the the DT cord-000248-zueoyesj 1016 7 Normalized Normalized NNP cord-000248-zueoyesj 1016 8 Shannon Shannon NNP cord-000248-zueoyesj 1016 9 Entropy Entropy NNP cord-000248-zueoyesj 1016 10 variations variation NNS cord-000248-zueoyesj 1016 11 of of IN cord-000248-zueoyesj 1016 12 the the DT cord-000248-zueoyesj 1016 13 gene gene NN cord-000248-zueoyesj 1016 14 expression expression NN cord-000248-zueoyesj 1016 15 profile profile NN cord-000248-zueoyesj 1016 16 convey convey VB cord-000248-zueoyesj 1016 17 information information NN cord-000248-zueoyesj 1016 18 about about IN cord-000248-zueoyesj 1016 19 global global JJ cord-000248-zueoyesj 1016 20 transcriptomic transcriptomic JJ cord-000248-zueoyesj 1016 21 changes change NNS cord-000248-zueoyesj 1016 22 ; ; : cord-000248-zueoyesj 1016 23 however however RB cord-000248-zueoyesj 1016 24 , , , cord-000248-zueoyesj 1016 25 this this DT cord-000248-zueoyesj 1016 26 measure measure NN cord-000248-zueoyesj 1016 27 alone alone RB cord-000248-zueoyesj 1016 28 is be VBZ cord-000248-zueoyesj 1016 29 not not RB cord-000248-zueoyesj 1016 30 enough enough JJ cord-000248-zueoyesj 1016 31 to to TO cord-000248-zueoyesj 1016 32 characterize characterize VB cord-000248-zueoyesj 1016 33 the the DT cord-000248-zueoyesj 1016 34 deviations deviation NNS cord-000248-zueoyesj 1016 35 from from IN cord-000248-zueoyesj 1016 36 normal normal JJ cord-000248-zueoyesj 1016 37 tissue tissue NN cord-000248-zueoyesj 1016 38 profiles profile NNS cord-000248-zueoyesj 1016 39 . . . cord-000248-zueoyesj 1017 1 For for IN cord-000248-zueoyesj 1017 2 example example NN cord-000248-zueoyesj 1017 3 , , , cord-000248-zueoyesj 1017 4 assume assume VBP cord-000248-zueoyesj 1017 5 that that IN cord-000248-zueoyesj 1017 6 Sample Sample NNP cord-000248-zueoyesj 1017 7 1 1 CD cord-000248-zueoyesj 1017 8 is be VBZ cord-000248-zueoyesj 1017 9 the the DT cord-000248-zueoyesj 1017 10 normal normal JJ cord-000248-zueoyesj 1017 11 profile profile NN cord-000248-zueoyesj 1017 12 of of IN cord-000248-zueoyesj 1017 13 a a DT cord-000248-zueoyesj 1017 14 particular particular JJ cord-000248-zueoyesj 1017 15 tissue tissue NN cord-000248-zueoyesj 1017 16 type type NN cord-000248-zueoyesj 1017 17 . . . cord-000248-zueoyesj 1018 1 Assume assume VB cord-000248-zueoyesj 1018 2 that that IN cord-000248-zueoyesj 1018 3 Sample Sample NNP cord-000248-zueoyesj 1018 4 3 3 CD cord-000248-zueoyesj 1018 5 is be VBZ cord-000248-zueoyesj 1018 6 the the DT cord-000248-zueoyesj 1018 7 profile profile NN cord-000248-zueoyesj 1018 8 of of IN cord-000248-zueoyesj 1018 9 a a DT cord-000248-zueoyesj 1018 10 cancer cancer NN cord-000248-zueoyesj 1018 11 cell cell NN cord-000248-zueoyesj 1018 12 that that WDT cord-000248-zueoyesj 1018 13 originated originate VBD cord-000248-zueoyesj 1018 14 from from IN cord-000248-zueoyesj 1018 15 that that DT cord-000248-zueoyesj 1018 16 tissue tissue NN cord-000248-zueoyesj 1018 17 type type NN cord-000248-zueoyesj 1018 18 , , , cord-000248-zueoyesj 1018 19 the the DT cord-000248-zueoyesj 1018 20 variation variation NN cord-000248-zueoyesj 1018 21 of of IN cord-000248-zueoyesj 1018 22 Normalized Normalized NNP cord-000248-zueoyesj 1018 23 Shannon Shannon NNP cord-000248-zueoyesj 1018 24 Entropy Entropy NNP cord-000248-zueoyesj 1018 25 can can MD cord-000248-zueoyesj 1018 26 be be VB cord-000248-zueoyesj 1018 27 related relate VBN cord-000248-zueoyesj 1018 28 to to IN cord-000248-zueoyesj 1018 29 this this DT cord-000248-zueoyesj 1018 30 malignant malignant JJ cord-000248-zueoyesj 1018 31 change change NN cord-000248-zueoyesj 1018 32 . . . cord-000248-zueoyesj 1019 1 However however RB cord-000248-zueoyesj 1019 2 , , , cord-000248-zueoyesj 1019 3 as as IN cord-000248-zueoyesj 1019 4 Sample sample NN cord-000248-zueoyesj 1019 5 2 2 CD cord-000248-zueoyesj 1019 6 illustrates illustrate NNS cord-000248-zueoyesj 1019 7 , , , cord-000248-zueoyesj 1019 8 Normalized Normalized NNP cord-000248-zueoyesj 1019 9 Shannon Shannon NNP cord-000248-zueoyesj 1019 10 Entropy Entropy NNP cord-000248-zueoyesj 1019 11 is be VBZ cord-000248-zueoyesj 1019 12 not not RB cord-000248-zueoyesj 1019 13 enough enough JJ cord-000248-zueoyesj 1019 14 to to TO cord-000248-zueoyesj 1019 15 let let VB cord-000248-zueoyesj 1019 16 us -PRON- PRP cord-000248-zueoyesj 1019 17 to to TO cord-000248-zueoyesj 1019 18 measure measure VB cord-000248-zueoyesj 1019 19 the the DT cord-000248-zueoyesj 1019 20 variation variation NN cord-000248-zueoyesj 1019 21 from from IN cord-000248-zueoyesj 1019 22 a a DT cord-000248-zueoyesj 1019 23 profile profile NN cord-000248-zueoyesj 1019 24 and and CC cord-000248-zueoyesj 1019 25 at at IN cord-000248-zueoyesj 1019 26 least least JJS cord-000248-zueoyesj 1019 27 another another DT cord-000248-zueoyesj 1019 28 Information information NN cord-000248-zueoyesj 1019 29 Theory Theory NNP cord-000248-zueoyesj 1019 30 quantifier quantifier NN cord-000248-zueoyesj 1019 31 is be VBZ cord-000248-zueoyesj 1019 32 needed need VBN cord-000248-zueoyesj 1019 33 . . . cord-000248-zueoyesj 1020 1 We -PRON- PRP cord-000248-zueoyesj 1020 2 resort resort VBP cord-000248-zueoyesj 1020 3 to to IN cord-000248-zueoyesj 1020 4 Statistical Statistical NNP cord-000248-zueoyesj 1020 5 Complexity Complexity NNP cord-000248-zueoyesj 1020 6 quantifiers quantifier NNS cord-000248-zueoyesj 1020 7 , , , cord-000248-zueoyesj 1020 8 which which WDT cord-000248-zueoyesj 1020 9 in in IN cord-000248-zueoyesj 1020 10 turn turn NN cord-000248-zueoyesj 1020 11 use use VBP cord-000248-zueoyesj 1020 12 the the DT cord-000248-zueoyesj 1020 13 Jensen Jensen NNP cord-000248-zueoyesj 1020 14 - - HYPH cord-000248-zueoyesj 1020 15 Shannon Shannon NNP cord-000248-zueoyesj 1020 16 divergence divergence NN cord-000248-zueoyesj 1020 17 [ [ -LRB- cord-000248-zueoyesj 1020 18 798 798 CD cord-000248-zueoyesj 1020 19 ] ] -RRB- cord-000248-zueoyesj 1020 20 to to TO cord-000248-zueoyesj 1020 21 provide provide VB cord-000248-zueoyesj 1020 22 this this DT cord-000248-zueoyesj 1020 23 complementary complementary JJ cord-000248-zueoyesj 1020 24 dimension dimension NN cord-000248-zueoyesj 1020 25 [ [ -LRB- cord-000248-zueoyesj 1020 26 800 800 CD cord-000248-zueoyesj 1020 27 ] ] -RRB- cord-000248-zueoyesj 1021 1 ( ( -LRB- cord-000248-zueoyesj 1021 2 refer refer VB cord-000248-zueoyesj 1021 3 to to IN cord-000248-zueoyesj 1021 4 the the DT cord-000248-zueoyesj 1021 5 ' ' `` cord-000248-zueoyesj 1021 6 Materials material NNS cord-000248-zueoyesj 1021 7 and and CC cord-000248-zueoyesj 1021 8 Methods Methods NNPS cord-000248-zueoyesj 1021 9 ' ' POS cord-000248-zueoyesj 1021 10 section section NN cord-000248-zueoyesj 1021 11 for for IN cord-000248-zueoyesj 1021 12 a a DT cord-000248-zueoyesj 1021 13 mathematical mathematical JJ cord-000248-zueoyesj 1021 14 definition definition NN cord-000248-zueoyesj 1021 15 of of IN cord-000248-zueoyesj 1021 16 the the DT cord-000248-zueoyesj 1021 17 Jensen Jensen NNP cord-000248-zueoyesj 1021 18 - - HYPH cord-000248-zueoyesj 1021 19 Shannon Shannon NNP cord-000248-zueoyesj 1021 20 divergence divergence NN cord-000248-zueoyesj 1021 21 ) ) -RRB- cord-000248-zueoyesj 1021 22 . . . cord-000248-zueoyesj 1022 1 Figure figure NN cord-000248-zueoyesj 1022 2 21 21 CD cord-000248-zueoyesj 1022 3 shows show NNS cord-000248-zueoyesj 1022 4 how how WRB cord-000248-zueoyesj 1022 5 the the DT cord-000248-zueoyesj 1022 6 Jensen Jensen NNP cord-000248-zueoyesj 1022 7 - - HYPH cord-000248-zueoyesj 1022 8 Shannon Shannon NNP cord-000248-zueoyesj 1022 9 divergence divergence NN cord-000248-zueoyesj 1022 10 helps help VBZ cord-000248-zueoyesj 1022 11 us -PRON- PRP cord-000248-zueoyesj 1022 12 to to TO cord-000248-zueoyesj 1022 13 evaluate evaluate VB cord-000248-zueoyesj 1022 14 the the DT cord-000248-zueoyesj 1022 15 variation variation NN cord-000248-zueoyesj 1022 16 between between IN cord-000248-zueoyesj 1022 17 profiles profile NNS cord-000248-zueoyesj 1022 18 . . . cord-000248-zueoyesj 1023 1 Samples sample NNS cord-000248-zueoyesj 1023 2 1 1 CD cord-000248-zueoyesj 1023 3 and and CC cord-000248-zueoyesj 1023 4 2 2 CD cord-000248-zueoyesj 1023 5 , , , cord-000248-zueoyesj 1023 6 as as IN cord-000248-zueoyesj 1023 7 perhaps perhaps RB cord-000248-zueoyesj 1023 8 intuitively intuitively RB cord-000248-zueoyesj 1023 9 expected expect VBN cord-000248-zueoyesj 1023 10 , , , cord-000248-zueoyesj 1023 11 have have VBP cord-000248-zueoyesj 1023 12 the the DT cord-000248-zueoyesj 1023 13 largest large JJS cord-000248-zueoyesj 1023 14 divergence divergence NN cord-000248-zueoyesj 1023 15 between between IN cord-000248-zueoyesj 1023 16 them -PRON- PRP cord-000248-zueoyesj 1023 17 , , , cord-000248-zueoyesj 1023 18 their -PRON- PRP$ cord-000248-zueoyesj 1023 19 Jensen Jensen NNP cord-000248-zueoyesj 1023 20 Shannon Shannon NNP cord-000248-zueoyesj 1023 21 divergence divergence NN cord-000248-zueoyesj 1023 22 is be VBZ cord-000248-zueoyesj 1023 23 0.286636 0.286636 CD cord-000248-zueoyesj 1023 24 ( ( -LRB- cord-000248-zueoyesj 1023 25 JS(1,2 JS(1,2 NNP cord-000248-zueoyesj 1023 26 ) ) -RRB- cord-000248-zueoyesj 1023 27 = = NFP cord-000248-zueoyesj 1024 1 Table table NN cord-000248-zueoyesj 1024 2 3 3 CD cord-000248-zueoyesj 1024 3 . . . cord-000248-zueoyesj 1025 1 An an DT cord-000248-zueoyesj 1025 2 example example NN cord-000248-zueoyesj 1025 3 dataset dataset NN cord-000248-zueoyesj 1025 4 to to TO cord-000248-zueoyesj 1025 5 illustrate illustrate VB cord-000248-zueoyesj 1025 6 the the DT cord-000248-zueoyesj 1025 7 principles principle NNS cord-000248-zueoyesj 1025 8 of of IN cord-000248-zueoyesj 1025 9 Shannon Shannon NNP cord-000248-zueoyesj 1025 10 Entropy Entropy NNP cord-000248-zueoyesj 1025 11 and and CC cord-000248-zueoyesj 1025 12 the the DT cord-000248-zueoyesj 1025 13 Information Information NNP cord-000248-zueoyesj 1025 14 Theory Theory NNP cord-000248-zueoyesj 1025 15 quantifiers quantifier NNS cord-000248-zueoyesj 1025 16 used use VBN cord-000248-zueoyesj 1025 17 in in IN cord-000248-zueoyesj 1025 18 this this DT cord-000248-zueoyesj 1025 19 work work NN cord-000248-zueoyesj 1025 20 . . . cord-000248-zueoyesj 1026 1 Table table NN cord-000248-zueoyesj 1026 2 3 3 CD cord-000248-zueoyesj 1026 3 . . . cord-000248-zueoyesj 1027 1 Sample sample NN cord-000248-zueoyesj 1027 2 4 4 CD cord-000248-zueoyesj 1027 3 has have VBZ cord-000248-zueoyesj 1027 4 the the DT cord-000248-zueoyesj 1027 5 largest large JJS cord-000248-zueoyesj 1027 6 attainable attainable JJ cord-000248-zueoyesj 1027 7 value value NN cord-000248-zueoyesj 1027 8 since since IN cord-000248-zueoyesj 1027 9 the the DT cord-000248-zueoyesj 1027 10 expression expression NN cord-000248-zueoyesj 1027 11 of of IN cord-000248-zueoyesj 1027 12 all all DT cord-000248-zueoyesj 1027 13 probes probe NNS cord-000248-zueoyesj 1027 14 is be VBZ cord-000248-zueoyesj 1027 15 the the DT cord-000248-zueoyesj 1027 16 same same JJ cord-000248-zueoyesj 1027 17 . . . cord-000248-zueoyesj 1028 1 Samples sample NNS cord-000248-zueoyesj 1028 2 1 1 CD cord-000248-zueoyesj 1028 3 and and CC cord-000248-zueoyesj 1028 4 2 2 CD cord-000248-zueoyesj 1028 5 , , , cord-000248-zueoyesj 1028 6 which which WDT cord-000248-zueoyesj 1028 7 have have VBP cord-000248-zueoyesj 1028 8 the the DT cord-000248-zueoyesj 1028 9 same same JJ cord-000248-zueoyesj 1028 10 set set NN cord-000248-zueoyesj 1028 11 of of IN cord-000248-zueoyesj 1028 12 expression expression NN cord-000248-zueoyesj 1028 13 values value NNS cord-000248-zueoyesj 1028 14 , , , cord-000248-zueoyesj 1028 15 although although IN cord-000248-zueoyesj 1028 16 in in IN cord-000248-zueoyesj 1028 17 different different JJ cord-000248-zueoyesj 1028 18 probes probe NNS cord-000248-zueoyesj 1028 19 , , , cord-000248-zueoyesj 1028 20 have have VBP cord-000248-zueoyesj 1028 21 the the DT cord-000248-zueoyesj 1028 22 same same JJ cord-000248-zueoyesj 1028 23 value value NN cord-000248-zueoyesj 1028 24 of of IN cord-000248-zueoyesj 1028 25 Normalized Normalized NNP cord-000248-zueoyesj 1028 26 Shannon Shannon NNP cord-000248-zueoyesj 1028 27 Entropy Entropy NNP cord-000248-zueoyesj 1028 28 . . . cord-000248-zueoyesj 1029 1 As as IN cord-000248-zueoyesj 1029 2 a a DT cord-000248-zueoyesj 1029 3 consequence consequence NN cord-000248-zueoyesj 1029 4 , , , cord-000248-zueoyesj 1029 5 there there EX cord-000248-zueoyesj 1029 6 is be VBZ cord-000248-zueoyesj 1029 7 a a DT cord-000248-zueoyesj 1029 8 need need NN cord-000248-zueoyesj 1029 9 for for IN cord-000248-zueoyesj 1029 10 another another DT cord-000248-zueoyesj 1029 11 quantifier quantifier NN cord-000248-zueoyesj 1029 12 of of IN cord-000248-zueoyesj 1029 13 gene gene NN cord-000248-zueoyesj 1029 14 expression expression NN cord-000248-zueoyesj 1029 15 to to TO cord-000248-zueoyesj 1029 16 address address VB cord-000248-zueoyesj 1029 17 the the DT cord-000248-zueoyesj 1029 18 permutational permutational JJ cord-000248-zueoyesj 1029 19 indistinguishability indistinguishability NN cord-000248-zueoyesj 1029 20 of of IN cord-000248-zueoyesj 1029 21 these these DT cord-000248-zueoyesj 1029 22 two two CD cord-000248-zueoyesj 1029 23 expression expression NN cord-000248-zueoyesj 1029 24 profiles profile NNS cord-000248-zueoyesj 1029 25 . . . cord-000248-zueoyesj 1030 1 The the DT cord-000248-zueoyesj 1030 2 Jensen Jensen NNP cord-000248-zueoyesj 1030 3 - - HYPH cord-000248-zueoyesj 1030 4 Shannon Shannon NNP cord-000248-zueoyesj 1030 5 divergence divergence NN cord-000248-zueoyesj 1030 6 provides provide VBZ cord-000248-zueoyesj 1030 7 a a DT cord-000248-zueoyesj 1030 8 natural natural JJ cord-000248-zueoyesj 1030 9 alternative alternative NN cord-000248-zueoyesj 1030 10 ( ( -LRB- cord-000248-zueoyesj 1030 11 see see VB cord-000248-zueoyesj 1030 12 Table Table NNP cord-000248-zueoyesj 1030 13 4 4 CD cord-000248-zueoyesj 1030 14 ) ) -RRB- cord-000248-zueoyesj 1030 15 . . . cord-000248-zueoyesj 1031 1 doi:10.1371 doi:10.1371 NNP cord-000248-zueoyesj 1032 1 /journal.pone.0012262.g021 /journal.pone.0012262.g021 : cord-000248-zueoyesj 1032 2 Table table NN cord-000248-zueoyesj 1032 3 4 4 CD cord-000248-zueoyesj 1032 4 . . . cord-000248-zueoyesj 1033 1 Jensen Jensen NNP cord-000248-zueoyesj 1033 2 - - HYPH cord-000248-zueoyesj 1033 3 Shannon Shannon NNP cord-000248-zueoyesj 1033 4 divergence divergence NN cord-000248-zueoyesj 1033 5 values value NNS cord-000248-zueoyesj 1033 6 using use VBG cord-000248-zueoyesj 1033 7 the the DT cord-000248-zueoyesj 1033 8 example example NN cord-000248-zueoyesj 1033 9 introduced introduce VBN cord-000248-zueoyesj 1033 10 in in IN cord-000248-zueoyesj 1033 11 Table Table NNP cord-000248-zueoyesj 1033 12 3 3 CD cord-000248-zueoyesj 1033 13 . . . cord-000248-zueoyesj 1034 1 Table table NN cord-000248-zueoyesj 1034 2 4 4 CD cord-000248-zueoyesj 1034 3 . . . cord-000248-zueoyesj 1035 1 Let let VB cord-000248-zueoyesj 1035 2 H h NN cord-000248-zueoyesj 1035 3 P p NN cord-000248-zueoyesj 1035 4 ( ( -LRB- cord-000248-zueoyesj 1035 5 j j NN cord-000248-zueoyesj 1035 6 ) ) -RRB- cord-000248-zueoyesj 1036 1 Â â NN cord-000248-zueoyesj 1037 1 Ã Ã NNS cord-000248-zueoyesj 1037 2 be be VBP cord-000248-zueoyesj 1037 3 the the DT cord-000248-zueoyesj 1037 4 Normalized Normalized NNP cord-000248-zueoyesj 1037 5 Shannon Shannon NNP cord-000248-zueoyesj 1037 6 Entropy Entropy NNP cord-000248-zueoyesj 1037 7 of of IN cord-000248-zueoyesj 1037 8 a a DT cord-000248-zueoyesj 1037 9 transcriptional transcriptional JJ cord-000248-zueoyesj 1037 10 sample sample NN cord-000248-zueoyesj 1037 11 profile profile NN cord-000248-zueoyesj 1037 12 , , , cord-000248-zueoyesj 1037 13 then then RB cord-000248-zueoyesj 1037 14 the the DT cord-000248-zueoyesj 1037 15 MPR MPR NNP cord-000248-zueoyesj 1037 16 - - HYPH cord-000248-zueoyesj 1037 17 Statistical Statistical NNP cord-000248-zueoyesj 1037 18 Complexity Complexity NNP cord-000248-zueoyesj 1037 19 C C NNP cord-000248-zueoyesj 1037 20 ( ( -LRB- cord-000248-zueoyesj 1037 21 MPR MPR NNP cord-000248-zueoyesj 1037 22 ) ) -RRB- cord-000248-zueoyesj 1037 23 P P NNP cord-000248-zueoyesj 1037 24 ( ( -LRB- cord-000248-zueoyesj 1037 25 j j NNP cord-000248-zueoyesj 1037 26 ) ) -RRB- cord-000248-zueoyesj 1037 27 Â â NN cord-000248-zueoyesj 1037 28 Ã Ã NNP cord-000248-zueoyesj 1037 29 is be VBZ cord-000248-zueoyesj 1037 30 defined define VBN cord-000248-zueoyesj 1037 31 as as IN cord-000248-zueoyesj 1037 32 being be VBG cord-000248-zueoyesj 1037 33 proportional proportional JJ cord-000248-zueoyesj 1037 34 to to IN cord-000248-zueoyesj 1037 35 the the DT cord-000248-zueoyesj 1037 36 product product NN cord-000248-zueoyesj 1037 37 of of IN cord-000248-zueoyesj 1037 38 the the DT cord-000248-zueoyesj 1037 39 Normalized Normalized NNP cord-000248-zueoyesj 1037 40 Shannon Shannon NNP cord-000248-zueoyesj 1037 41 Entropy Entropy NNP cord-000248-zueoyesj 1037 42 times time VBZ cord-000248-zueoyesj 1037 43 the the DT cord-000248-zueoyesj 1037 44 Jensen Jensen NNP cord-000248-zueoyesj 1037 45 - - HYPH cord-000248-zueoyesj 1037 46 Shannon Shannon NNP cord-000248-zueoyesj 1037 47 divergence divergence NN cord-000248-zueoyesj 1037 48 of of IN cord-000248-zueoyesj 1037 49 the the DT cord-000248-zueoyesj 1037 50 profile profile NN cord-000248-zueoyesj 1037 51 with with IN cord-000248-zueoyesj 1037 52 the the DT cord-000248-zueoyesj 1037 53 equiprobable equiprobable JJ cord-000248-zueoyesj 1037 54 distribution distribution NN cord-000248-zueoyesj 1037 55 ( ( -LRB- cord-000248-zueoyesj 1037 56 in in IN cord-000248-zueoyesj 1037 57 the the DT cord-000248-zueoyesj 1037 58 example example NN cord-000248-zueoyesj 1037 59 above above IN cord-000248-zueoyesj 1037 60 the the DT cord-000248-zueoyesj 1037 61 equiprobable equiprobable JJ cord-000248-zueoyesj 1037 62 distribution distribution NN cord-000248-zueoyesj 1037 63 is be VBZ cord-000248-zueoyesj 1037 64 that that DT cord-000248-zueoyesj 1037 65 of of IN cord-000248-zueoyesj 1037 66 Sample Sample NNP cord-000248-zueoyesj 1037 67 4 4 CD cord-000248-zueoyesj 1037 68 ) ) -RRB- cord-000248-zueoyesj 1037 69 . . . cord-000248-zueoyesj 1038 1 Then then RB cord-000248-zueoyesj 1038 2 we -PRON- PRP cord-000248-zueoyesj 1038 3 have have VBP cord-000248-zueoyesj 1038 4 Where where WRB cord-000248-zueoyesj 1038 5 Q Q NNP cord-000248-zueoyesj 1038 6 0 0 NFP cord-000248-zueoyesj 1038 7 is be VBZ cord-000248-zueoyesj 1038 8 a a DT cord-000248-zueoyesj 1038 9 normalization normalization NN cord-000248-zueoyesj 1038 10 factor factor NN cord-000248-zueoyesj 1038 11 . . . cord-000248-zueoyesj 1039 1 Once once RB cord-000248-zueoyesj 1039 2 again again RB cord-000248-zueoyesj 1039 3 , , , cord-000248-zueoyesj 1039 4 we -PRON- PRP cord-000248-zueoyesj 1039 5 refer refer VBP cord-000248-zueoyesj 1039 6 to to IN cord-000248-zueoyesj 1039 7 the the DT cord-000248-zueoyesj 1039 8 ' ' `` cord-000248-zueoyesj 1039 9 Materials material NNS cord-000248-zueoyesj 1039 10 and and CC cord-000248-zueoyesj 1039 11 Methods Methods NNPS cord-000248-zueoyesj 1039 12 ' ' POS cord-000248-zueoyesj 1039 13 sections section NNS cord-000248-zueoyesj 1039 14 for for IN cord-000248-zueoyesj 1039 15 the the DT cord-000248-zueoyesj 1039 16 accompanying accompany VBG cord-000248-zueoyesj 1039 17 formal formal JJ cord-000248-zueoyesj 1039 18 mathematical mathematical JJ cord-000248-zueoyesj 1039 19 presentation presentation NN cord-000248-zueoyesj 1039 20 . . . cord-000248-zueoyesj 1040 1 As as IN cord-000248-zueoyesj 1040 2 a a DT cord-000248-zueoyesj 1040 3 consequence consequence NN cord-000248-zueoyesj 1040 4 , , , cord-000248-zueoyesj 1040 5 we -PRON- PRP cord-000248-zueoyesj 1040 6 can can MD cord-000248-zueoyesj 1040 7 plot plot VB cord-000248-zueoyesj 1040 8 the the DT cord-000248-zueoyesj 1040 9 MPR MPR NNP cord-000248-zueoyesj 1040 10 - - HYPH cord-000248-zueoyesj 1040 11 Statistical Statistical NNP cord-000248-zueoyesj 1040 12 Complexity Complexity NNP cord-000248-zueoyesj 1040 13 of of IN cord-000248-zueoyesj 1040 14 the the DT cord-000248-zueoyesj 1040 15 samples sample NNS cord-000248-zueoyesj 1040 16 of of IN cord-000248-zueoyesj 1040 17 our -PRON- PRP$ cord-000248-zueoyesj 1040 18 example example NN cord-000248-zueoyesj 1040 19 as as IN cord-000248-zueoyesj 1040 20 a a DT cord-000248-zueoyesj 1040 21 function function NN cord-000248-zueoyesj 1040 22 of of IN cord-000248-zueoyesj 1040 23 the the DT cord-000248-zueoyesj 1040 24 Normalized Normalized NNP cord-000248-zueoyesj 1040 25 Shannon Shannon NNP cord-000248-zueoyesj 1040 26 Entropy Entropy NNP cord-000248-zueoyesj 1040 27 as as IN cord-000248-zueoyesj 1040 28 can can MD cord-000248-zueoyesj 1040 29 be be VB cord-000248-zueoyesj 1040 30 seen see VBN cord-000248-zueoyesj 1040 31 in in IN cord-000248-zueoyesj 1040 32 Figure Figure NNP cord-000248-zueoyesj 1040 33 22 22 CD cord-000248-zueoyesj 1040 34 . . . cord-000248-zueoyesj 1041 1 Annotated annotated JJ cord-000248-zueoyesj 1041 2 genes gene NNS cord-000248-zueoyesj 1041 3 . . . cord-000248-zueoyesj 1042 1 A a DT cord-000248-zueoyesj 1042 2 full full JJ cord-000248-zueoyesj 1042 3 list list NN cord-000248-zueoyesj 1042 4 of of IN cord-000248-zueoyesj 1042 5 gene gene NN cord-000248-zueoyesj 1042 6 references reference NNS cord-000248-zueoyesj 1042 7 in in IN cord-000248-zueoyesj 1042 8 this this DT cord-000248-zueoyesj 1042 9 paper paper NN cord-000248-zueoyesj 1042 10 along along IN cord-000248-zueoyesj 1042 11 with with IN cord-000248-zueoyesj 1042 12 their -PRON- PRP$ cord-000248-zueoyesj 1042 13 descriptions description NNS cord-000248-zueoyesj 1042 14 from from IN cord-000248-zueoyesj 1042 15 iHOP ihop JJ cord-000248-zueoyesj 1042 16 ( ( -LRB- cord-000248-zueoyesj 1042 17 http://www.ihop http://www.ihop NNP cord-000248-zueoyesj 1042 18 - - HYPH cord-000248-zueoyesj 1042 19 net net NN cord-000248-zueoyesj 1042 20 . . . cord-000248-zueoyesj 1043 1 org org NNP cord-000248-zueoyesj 1043 2 / / SYM cord-000248-zueoyesj 1043 3 UniPub UniPub NNP cord-000248-zueoyesj 1043 4 / / SYM cord-000248-zueoyesj 1043 5 iHOP/ iHOP/ NNP cord-000248-zueoyesj 1043 6 ) ) -RRB- cord-000248-zueoyesj 1043 7 can can MD cord-000248-zueoyesj 1043 8 be be VB cord-000248-zueoyesj 1043 9 found find VBN cord-000248-zueoyesj 1043 10 in in IN cord-000248-zueoyesj 1043 11 supplementary supplementary JJ cord-000248-zueoyesj 1043 12 material material NN cord-000248-zueoyesj 1043 13 reference reference NN cord-000248-zueoyesj 1043 14 File File NNP cord-000248-zueoyesj 1043 15 S5 S5 NNP cord-000248-zueoyesj 1043 16 . . . cord-000248-zueoyesj 1043 17 _SP cord-000248-zueoyesj 1044 1 Stemness Stemness NNP cord-000248-zueoyesj 1044 2 , , , cord-000248-zueoyesj 1044 3 cancer cancer NN cord-000248-zueoyesj 1044 4 and and CC cord-000248-zueoyesj 1044 5 cancer cancer NN cord-000248-zueoyesj 1044 6 stem stem NN cord-000248-zueoyesj 1044 7 cells cell NNS cord-000248-zueoyesj 1045 1 Stemness Stemness NNP cord-000248-zueoyesj 1045 2 ' ' POS cord-000248-zueoyesj 1045 3 ' ' '' cord-000248-zueoyesj 1045 4 genomics genomic NNS cord-000248-zueoyesj 1045 5 law law NN cord-000248-zueoyesj 1045 6 governs govern VBZ cord-000248-zueoyesj 1045 7 clinical clinical JJ cord-000248-zueoyesj 1045 8 behavior behavior NN cord-000248-zueoyesj 1045 9 of of IN cord-000248-zueoyesj 1045 10 human human JJ cord-000248-zueoyesj 1045 11 cancer cancer NN cord-000248-zueoyesj 1045 12 : : : cord-000248-zueoyesj 1045 13 implications implication NNS cord-000248-zueoyesj 1045 14 for for IN cord-000248-zueoyesj 1045 15 decision decision NN cord-000248-zueoyesj 1045 16 making making NN cord-000248-zueoyesj 1045 17 in in IN cord-000248-zueoyesj 1045 18 disease disease NN cord-000248-zueoyesj 1045 19 management management NN cord-000248-zueoyesj 1046 1 An an DT cord-000248-zueoyesj 1046 2 embryonic embryonic JJ cord-000248-zueoyesj 1046 3 stem stem NN cord-000248-zueoyesj 1046 4 cell cell NN cord-000248-zueoyesj 1046 5 - - HYPH cord-000248-zueoyesj 1046 6 like like JJ cord-000248-zueoyesj 1046 7 gene gene NN cord-000248-zueoyesj 1046 8 expression expression NN cord-000248-zueoyesj 1046 9 signature signature NN cord-000248-zueoyesj 1046 10 in in IN cord-000248-zueoyesj 1046 11 poorly poorly RB cord-000248-zueoyesj 1046 12 differentiated differentiate VBN cord-000248-zueoyesj 1046 13 aggressive aggressive JJ cord-000248-zueoyesj 1046 14 human human JJ cord-000248-zueoyesj 1046 15 tumors tumor NNS cord-000248-zueoyesj 1046 16 Mitochondrial mitochondrial JJ cord-000248-zueoyesj 1046 17 localization localization NN cord-000248-zueoyesj 1046 18 , , , cord-000248-zueoyesj 1046 19 ELK-1 elk-1 JJ cord-000248-zueoyesj 1046 20 transcriptional transcriptional JJ cord-000248-zueoyesj 1046 21 regulation regulation NN cord-000248-zueoyesj 1046 22 and and CC cord-000248-zueoyesj 1046 23 growth growth NN cord-000248-zueoyesj 1046 24 inhibitory inhibitory JJ cord-000248-zueoyesj 1046 25 functions function NNS cord-000248-zueoyesj 1046 26 of of IN cord-000248-zueoyesj 1046 27 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1046 28 , , , cord-000248-zueoyesj 1046 29 BRCA1a BRCA1a NNP cord-000248-zueoyesj 1046 30 , , , cord-000248-zueoyesj 1046 31 and and CC cord-000248-zueoyesj 1046 32 BRCA1b BRCA1b NNP cord-000248-zueoyesj 1046 33 proteins protein NNS cord-000248-zueoyesj 1046 34 Mitochondria mitochondrion NNS cord-000248-zueoyesj 1046 35 and and CC cord-000248-zueoyesj 1046 36 cancer cancer NN cord-000248-zueoyesj 1046 37 Glucose glucose NN cord-000248-zueoyesj 1046 38 avidity avidity NN cord-000248-zueoyesj 1046 39 of of IN cord-000248-zueoyesj 1046 40 carcinomas carcinoma NNS cord-000248-zueoyesj 1046 41 Mitochondrial mitochondrial JJ cord-000248-zueoyesj 1046 42 DNA dna NN cord-000248-zueoyesj 1046 43 instability instability NN cord-000248-zueoyesj 1046 44 and and CC cord-000248-zueoyesj 1046 45 metabolic metabolic JJ cord-000248-zueoyesj 1046 46 shift shift NN cord-000248-zueoyesj 1046 47 in in IN cord-000248-zueoyesj 1046 48 human human JJ cord-000248-zueoyesj 1046 49 cancers cancer NNS cord-000248-zueoyesj 1046 50 Roles role NNS cord-000248-zueoyesj 1046 51 of of IN cord-000248-zueoyesj 1046 52 p53 p53 NN cord-000248-zueoyesj 1046 53 , , , cord-000248-zueoyesj 1046 54 MYC MYC NNP cord-000248-zueoyesj 1046 55 and and CC cord-000248-zueoyesj 1046 56 HIF-1 HIF-1 NNP cord-000248-zueoyesj 1047 1 in in IN cord-000248-zueoyesj 1047 2 regulating regulate VBG cord-000248-zueoyesj 1047 3 glycolysis glycolysis NN cord-000248-zueoyesj 1047 4 -the -the NFP cord-000248-zueoyesj 1047 5 seventh seventh JJ cord-000248-zueoyesj 1047 6 hallmark hallmark NN cord-000248-zueoyesj 1047 7 of of IN cord-000248-zueoyesj 1047 8 cancer cancer NN cord-000248-zueoyesj 1047 9 Alteration Alteration NNP cord-000248-zueoyesj 1047 10 of of IN cord-000248-zueoyesj 1047 11 the the DT cord-000248-zueoyesj 1047 12 bioenergetic bioenergetic JJ cord-000248-zueoyesj 1047 13 phenotype phenotype NN cord-000248-zueoyesj 1047 14 of of IN cord-000248-zueoyesj 1047 15 mitochondria mitochondrion NNS cord-000248-zueoyesj 1047 16 is be VBZ cord-000248-zueoyesj 1047 17 a a DT cord-000248-zueoyesj 1047 18 hallmark hallmark NN cord-000248-zueoyesj 1047 19 of of IN cord-000248-zueoyesj 1047 20 breast breast NN cord-000248-zueoyesj 1047 21 , , , cord-000248-zueoyesj 1047 22 gastric gastric JJ cord-000248-zueoyesj 1047 23 , , , cord-000248-zueoyesj 1047 24 lung lung NN cord-000248-zueoyesj 1047 25 and and CC cord-000248-zueoyesj 1047 26 oesophageal oesophageal JJ cord-000248-zueoyesj 1047 27 cancer cancer NN cord-000248-zueoyesj 1047 28 Deregulation deregulation NN cord-000248-zueoyesj 1047 29 of of IN cord-000248-zueoyesj 1047 30 the the DT cord-000248-zueoyesj 1047 31 G1 G1 NNP cord-000248-zueoyesj 1047 32 / / SYM cord-000248-zueoyesj 1047 33 S s NN cord-000248-zueoyesj 1047 34 - - HYPH cord-000248-zueoyesj 1047 35 phase phase NN cord-000248-zueoyesj 1047 36 control control NN cord-000248-zueoyesj 1047 37 in in IN cord-000248-zueoyesj 1047 38 human human JJ cord-000248-zueoyesj 1047 39 testicular testicular JJ cord-000248-zueoyesj 1047 40 germ germ NN cord-000248-zueoyesj 1047 41 cell cell NN cord-000248-zueoyesj 1047 42 tumours tumour NNS cord-000248-zueoyesj 1048 1 Aberrant aberrant JJ cord-000248-zueoyesj 1048 2 DNA dna NN cord-000248-zueoyesj 1048 3 methylation methylation NN cord-000248-zueoyesj 1048 4 as as IN cord-000248-zueoyesj 1048 5 a a DT cord-000248-zueoyesj 1048 6 cancer cancer NN cord-000248-zueoyesj 1048 7 - - HYPH cord-000248-zueoyesj 1048 8 inducing induce VBG cord-000248-zueoyesj 1048 9 mechanism mechanism NN cord-000248-zueoyesj 1048 10 Promoter Promoter NNP cord-000248-zueoyesj 1048 11 hypermethylation hypermethylation NN cord-000248-zueoyesj 1048 12 of of IN cord-000248-zueoyesj 1048 13 hallmark hallmark JJ cord-000248-zueoyesj 1048 14 cancer cancer NN cord-000248-zueoyesj 1048 15 genes gene NNS cord-000248-zueoyesj 1048 16 in in IN cord-000248-zueoyesj 1048 17 atypical atypical JJ cord-000248-zueoyesj 1048 18 adenomatous adenomatous JJ cord-000248-zueoyesj 1048 19 hyperplasia hyperplasia NN cord-000248-zueoyesj 1048 20 of of IN cord-000248-zueoyesj 1048 21 the the DT cord-000248-zueoyesj 1048 22 lung lung NN cord-000248-zueoyesj 1048 23 Loss Loss NNP cord-000248-zueoyesj 1048 24 of of IN cord-000248-zueoyesj 1048 25 acetylation acetylation NN cord-000248-zueoyesj 1048 26 at at IN cord-000248-zueoyesj 1048 27 Lys16 Lys16 NNP cord-000248-zueoyesj 1048 28 and and CC cord-000248-zueoyesj 1048 29 trimethylation trimethylation NN cord-000248-zueoyesj 1048 30 at at IN cord-000248-zueoyesj 1048 31 Lys20 Lys20 NNP cord-000248-zueoyesj 1048 32 of of IN cord-000248-zueoyesj 1048 33 histone histone NNP cord-000248-zueoyesj 1048 34 H4 H4 NNP cord-000248-zueoyesj 1048 35 is be VBZ cord-000248-zueoyesj 1048 36 a a DT cord-000248-zueoyesj 1048 37 common common JJ cord-000248-zueoyesj 1048 38 hallmark hallmark NN cord-000248-zueoyesj 1048 39 of of IN cord-000248-zueoyesj 1048 40 human human JJ cord-000248-zueoyesj 1048 41 cancer cancer NN cord-000248-zueoyesj 1048 42 Metabolic metabolic JJ cord-000248-zueoyesj 1048 43 transformation transformation NN cord-000248-zueoyesj 1048 44 in in IN cord-000248-zueoyesj 1048 45 cancer cancer NN cord-000248-zueoyesj 1048 46 Metabolic metabolic JJ cord-000248-zueoyesj 1048 47 targeting targeting NN cord-000248-zueoyesj 1048 48 of of IN cord-000248-zueoyesj 1048 49 cancers cancer NNS cord-000248-zueoyesj 1048 50 : : : cord-000248-zueoyesj 1048 51 from from IN cord-000248-zueoyesj 1048 52 molecular molecular JJ cord-000248-zueoyesj 1048 53 mechanisms mechanism NNS cord-000248-zueoyesj 1048 54 to to IN cord-000248-zueoyesj 1048 55 therapeutic therapeutic JJ cord-000248-zueoyesj 1048 56 strategies strategy NNS cord-000248-zueoyesj 1048 57 Tumor tumor NN cord-000248-zueoyesj 1048 58 cell cell NN cord-000248-zueoyesj 1048 59 metabolism metabolism NN cord-000248-zueoyesj 1048 60 : : : cord-000248-zueoyesj 1048 61 cancer cancer NN cord-000248-zueoyesj 1048 62 's 's POS cord-000248-zueoyesj 1048 63 Achilles Achilles NNP cord-000248-zueoyesj 1048 64 ' ' POS cord-000248-zueoyesj 1048 65 heel heel NN cord-000248-zueoyesj 1048 66 Role role NN cord-000248-zueoyesj 1048 67 of of IN cord-000248-zueoyesj 1048 68 hypoxia hypoxia NN cord-000248-zueoyesj 1048 69 in in IN cord-000248-zueoyesj 1048 70 the the DT cord-000248-zueoyesj 1048 71 hallmarks hallmark NNS cord-000248-zueoyesj 1048 72 of of IN cord-000248-zueoyesj 1048 73 human human JJ cord-000248-zueoyesj 1048 74 cancer cancer NN cord-000248-zueoyesj 1048 75 Adaptation adaptation NN cord-000248-zueoyesj 1048 76 to to IN cord-000248-zueoyesj 1048 77 hypoxia hypoxia NN cord-000248-zueoyesj 1048 78 and and CC cord-000248-zueoyesj 1048 79 acidosis acidosis NN cord-000248-zueoyesj 1048 80 in in IN cord-000248-zueoyesj 1048 81 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1048 82 and and CC cord-000248-zueoyesj 1048 83 tumor tumor NN cord-000248-zueoyesj 1048 84 progression progression NN cord-000248-zueoyesj 1049 1 MicroRNAs MicroRNAs NNP cord-000248-zueoyesj 1049 2 : : : cord-000248-zueoyesj 1050 1 Novel novel JJ cord-000248-zueoyesj 1050 2 regulators regulator NNS cord-000248-zueoyesj 1050 3 in in IN cord-000248-zueoyesj 1050 4 the the DT cord-000248-zueoyesj 1050 5 hallmarks hallmark NNS cord-000248-zueoyesj 1050 6 of of IN cord-000248-zueoyesj 1050 7 human human JJ cord-000248-zueoyesj 1050 8 cancer cancer NN cord-000248-zueoyesj 1050 9 MicroRNAs MicroRNAs NNP cord-000248-zueoyesj 1050 10 and and CC cord-000248-zueoyesj 1050 11 the the DT cord-000248-zueoyesj 1050 12 hallmarks hallmark NNS cord-000248-zueoyesj 1050 13 of of IN cord-000248-zueoyesj 1050 14 cancer cancer NN cord-000248-zueoyesj 1050 15 Genetic genetic JJ cord-000248-zueoyesj 1050 16 and and CC cord-000248-zueoyesj 1050 17 epigenetic epigenetic JJ cord-000248-zueoyesj 1050 18 mosaicism mosaicism NN cord-000248-zueoyesj 1050 19 in in IN cord-000248-zueoyesj 1050 20 cancer cancer NN cord-000248-zueoyesj 1050 21 precursor precursor NN cord-000248-zueoyesj 1050 22 tissues tissue VBZ cord-000248-zueoyesj 1050 23 Road Road NNP cord-000248-zueoyesj 1050 24 to to IN cord-000248-zueoyesj 1050 25 the the DT cord-000248-zueoyesj 1050 26 crossroads crossroad NNS cord-000248-zueoyesj 1050 27 of of IN cord-000248-zueoyesj 1050 28 life life NN cord-000248-zueoyesj 1050 29 and and CC cord-000248-zueoyesj 1050 30 death death NN cord-000248-zueoyesj 1050 31 : : : cord-000248-zueoyesj 1051 1 Linking link VBG cord-000248-zueoyesj 1051 2 sister sister NN cord-000248-zueoyesj 1051 3 chromatid chromatid JJ cord-000248-zueoyesj 1051 4 cohesion cohesion NN cord-000248-zueoyesj 1051 5 and and CC cord-000248-zueoyesj 1051 6 separation separation NN cord-000248-zueoyesj 1051 7 to to IN cord-000248-zueoyesj 1051 8 aneuploidy aneuploidy NN cord-000248-zueoyesj 1051 9 , , , cord-000248-zueoyesj 1051 10 apoptosis apoptosis NN cord-000248-zueoyesj 1051 11 and and CC cord-000248-zueoyesj 1051 12 cancer cancer NN cord-000248-zueoyesj 1051 13 Chromosome chromosome NN cord-000248-zueoyesj 1051 14 aberrations aberration NNS cord-000248-zueoyesj 1051 15 in in IN cord-000248-zueoyesj 1051 16 solid solid JJ cord-000248-zueoyesj 1051 17 tumors tumor NNS cord-000248-zueoyesj 1051 18 Instability instability NN cord-000248-zueoyesj 1051 19 of of IN cord-000248-zueoyesj 1051 20 chromosome chromosome NN cord-000248-zueoyesj 1051 21 structure structure NN cord-000248-zueoyesj 1051 22 in in IN cord-000248-zueoyesj 1051 23 cancer cancer NN cord-000248-zueoyesj 1051 24 cells cell NNS cord-000248-zueoyesj 1051 25 increases increase VBZ cord-000248-zueoyesj 1051 26 exponentially exponentially RB cord-000248-zueoyesj 1051 27 with with IN cord-000248-zueoyesj 1051 28 degrees degree NNS cord-000248-zueoyesj 1051 29 of of IN cord-000248-zueoyesj 1051 30 aneuploidy aneuploidy NN cord-000248-zueoyesj 1052 1 Genetic genetic JJ cord-000248-zueoyesj 1052 2 instability instability NN cord-000248-zueoyesj 1052 3 of of IN cord-000248-zueoyesj 1052 4 cancer cancer NN cord-000248-zueoyesj 1052 5 cells cell NNS cord-000248-zueoyesj 1052 6 is be VBZ cord-000248-zueoyesj 1052 7 proportional proportional JJ cord-000248-zueoyesj 1052 8 to to IN cord-000248-zueoyesj 1052 9 their -PRON- PRP$ cord-000248-zueoyesj 1052 10 degree degree NN cord-000248-zueoyesj 1052 11 of of IN cord-000248-zueoyesj 1052 12 aneuploidy aneuploidy NN cord-000248-zueoyesj 1052 13 Cell cell NN cord-000248-zueoyesj 1052 14 junctions junction NNS cord-000248-zueoyesj 1052 15 and and CC cord-000248-zueoyesj 1052 16 the the DT cord-000248-zueoyesj 1052 17 biological biological JJ cord-000248-zueoyesj 1052 18 behaviour behaviour NN cord-000248-zueoyesj 1052 19 of of IN cord-000248-zueoyesj 1052 20 cancer cancer NN cord-000248-zueoyesj 1052 21 Mitochondrial mitochondrial JJ cord-000248-zueoyesj 1052 22 gateways gateway NNS cord-000248-zueoyesj 1052 23 to to IN cord-000248-zueoyesj 1052 24 cancer cancer NN cord-000248-zueoyesj 1052 25 Cancer cancer NN cord-000248-zueoyesj 1052 26 - - HYPH cord-000248-zueoyesj 1052 27 related relate VBN cord-000248-zueoyesj 1052 28 inflammation inflammation NN cord-000248-zueoyesj 1052 29 , , , cord-000248-zueoyesj 1052 30 the the DT cord-000248-zueoyesj 1052 31 seventh seventh JJ cord-000248-zueoyesj 1052 32 hallmark hallmark NN cord-000248-zueoyesj 1052 33 of of IN cord-000248-zueoyesj 1052 34 cancer cancer NN cord-000248-zueoyesj 1052 35 : : : cord-000248-zueoyesj 1052 36 links link NNS cord-000248-zueoyesj 1052 37 to to IN cord-000248-zueoyesj 1052 38 genetic genetic JJ cord-000248-zueoyesj 1052 39 instability instability NN cord-000248-zueoyesj 1052 40 Pathways pathway NNS cord-000248-zueoyesj 1052 41 connecting connect VBG cord-000248-zueoyesj 1052 42 inflammation inflammation NN cord-000248-zueoyesj 1052 43 and and CC cord-000248-zueoyesj 1052 44 cancer cancer NN cord-000248-zueoyesj 1052 45 Hallmarks Hallmarks NNP cord-000248-zueoyesj 1052 46 for for IN cord-000248-zueoyesj 1052 47 senescence senescence NN cord-000248-zueoyesj 1052 48 in in IN cord-000248-zueoyesj 1052 49 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1052 50 : : : cord-000248-zueoyesj 1052 51 novel novel NN cord-000248-zueoyesj 1052 52 signaling signal VBG cord-000248-zueoyesj 1052 53 players player NNS cord-000248-zueoyesj 1052 54 NF NF NNP cord-000248-zueoyesj 1052 55 - - HYPH cord-000248-zueoyesj 1052 56 kappaB kappaB NNP cord-000248-zueoyesj 1052 57 and and CC cord-000248-zueoyesj 1052 58 cancer cancer NN cord-000248-zueoyesj 1052 59 - - HYPH cord-000248-zueoyesj 1052 60 identifying identify VBG cord-000248-zueoyesj 1052 61 targets target NNS cord-000248-zueoyesj 1052 62 and and CC cord-000248-zueoyesj 1052 63 mechanisms mechanism NNS cord-000248-zueoyesj 1052 64 Altered alter VBN cord-000248-zueoyesj 1052 65 growth growth NN cord-000248-zueoyesj 1052 66 pattern pattern NN cord-000248-zueoyesj 1052 67 , , , cord-000248-zueoyesj 1052 68 not not RB cord-000248-zueoyesj 1052 69 altered alter VBN cord-000248-zueoyesj 1052 70 growth growth NN cord-000248-zueoyesj 1052 71 per per IN cord-000248-zueoyesj 1052 72 se se FW cord-000248-zueoyesj 1052 73 , , , cord-000248-zueoyesj 1052 74 is be VBZ cord-000248-zueoyesj 1052 75 the the DT cord-000248-zueoyesj 1052 76 hallmark hallmark NN cord-000248-zueoyesj 1052 77 of of IN cord-000248-zueoyesj 1052 78 early early JJ cord-000248-zueoyesj 1052 79 lesions lesion NNS cord-000248-zueoyesj 1052 80 preceding precede VBG cord-000248-zueoyesj 1052 81 cancer cancer NN cord-000248-zueoyesj 1052 82 development development NN cord-000248-zueoyesj 1052 83 MicroRNAs MicroRNAs NNP cord-000248-zueoyesj 1052 84 and and CC cord-000248-zueoyesj 1052 85 cancer cancer NN cord-000248-zueoyesj 1052 86 epigenetics epigenetic NNS cord-000248-zueoyesj 1053 1 Common common JJ cord-000248-zueoyesj 1053 2 themes theme NNS cord-000248-zueoyesj 1053 3 of of IN cord-000248-zueoyesj 1053 4 dedifferentiation dedifferentiation NN cord-000248-zueoyesj 1053 5 in in IN cord-000248-zueoyesj 1053 6 somatic somatic JJ cord-000248-zueoyesj 1053 7 cell cell NN cord-000248-zueoyesj 1053 8 reprogramming reprogramming NN cord-000248-zueoyesj 1053 9 and and CC cord-000248-zueoyesj 1053 10 cancer cancer NN cord-000248-zueoyesj 1053 11 Disruption disruption NN cord-000248-zueoyesj 1053 12 of of IN cord-000248-zueoyesj 1053 13 differentiation differentiation NN cord-000248-zueoyesj 1053 14 in in IN cord-000248-zueoyesj 1053 15 human human JJ cord-000248-zueoyesj 1053 16 cancer cancer NN cord-000248-zueoyesj 1053 17 : : : cord-000248-zueoyesj 1053 18 AML AML NNP cord-000248-zueoyesj 1053 19 shows show VBZ cord-000248-zueoyesj 1053 20 the the DT cord-000248-zueoyesj 1053 21 way way NN cord-000248-zueoyesj 1053 22 Molecular molecular JJ cord-000248-zueoyesj 1053 23 theory theory NN cord-000248-zueoyesj 1053 24 of of IN cord-000248-zueoyesj 1053 25 cancer cancer NN cord-000248-zueoyesj 1053 26 Principles principle NNS cord-000248-zueoyesj 1053 27 of of IN cord-000248-zueoyesj 1053 28 cancer cancer NN cord-000248-zueoyesj 1053 29 therapy therapy NN cord-000248-zueoyesj 1053 30 : : : cord-000248-zueoyesj 1053 31 oncogene oncogene NN cord-000248-zueoyesj 1053 32 and and CC cord-000248-zueoyesj 1053 33 non non JJ cord-000248-zueoyesj 1053 34 - - JJ cord-000248-zueoyesj 1053 35 oncogene oncogene JJ cord-000248-zueoyesj 1053 36 addiction addiction NN cord-000248-zueoyesj 1053 37 Stem Stem NNP cord-000248-zueoyesj 1053 38 cell cell NN cord-000248-zueoyesj 1053 39 regulation regulation NN cord-000248-zueoyesj 1053 40 and and CC cord-000248-zueoyesj 1053 41 the the DT cord-000248-zueoyesj 1053 42 development development NN cord-000248-zueoyesj 1053 43 of of IN cord-000248-zueoyesj 1053 44 blast blast NN cord-000248-zueoyesj 1053 45 crisis crisis NN cord-000248-zueoyesj 1053 46 in in IN cord-000248-zueoyesj 1053 47 chronic chronic JJ cord-000248-zueoyesj 1053 48 myeloid myeloid NN cord-000248-zueoyesj 1053 49 leukemia leukemia NN cord-000248-zueoyesj 1053 50 : : : cord-000248-zueoyesj 1053 51 Implications implication NNS cord-000248-zueoyesj 1053 52 for for IN cord-000248-zueoyesj 1053 53 the the DT cord-000248-zueoyesj 1053 54 outcome outcome NN cord-000248-zueoyesj 1053 55 of of IN cord-000248-zueoyesj 1053 56 Imatinib Imatinib NNP cord-000248-zueoyesj 1053 57 treatment treatment NN cord-000248-zueoyesj 1053 58 and and CC cord-000248-zueoyesj 1053 59 discontinuation discontinuation NN cord-000248-zueoyesj 1053 60 Classification classification NN cord-000248-zueoyesj 1053 61 of of IN cord-000248-zueoyesj 1053 62 prostatic prostatic JJ cord-000248-zueoyesj 1053 63 carcinomas carcinoma NNS cord-000248-zueoyesj 1053 64 Trends trend NNS cord-000248-zueoyesj 1053 65 in in IN cord-000248-zueoyesj 1053 66 reporting report VBG cord-000248-zueoyesj 1053 67 Gleason Gleason NNP cord-000248-zueoyesj 1053 68 score score NN cord-000248-zueoyesj 1053 69 1991 1991 CD cord-000248-zueoyesj 1053 70 to to IN cord-000248-zueoyesj 1053 71 2001 2001 CD cord-000248-zueoyesj 1053 72 : : : cord-000248-zueoyesj 1053 73 changes change NNS cord-000248-zueoyesj 1053 74 in in IN cord-000248-zueoyesj 1053 75 the the DT cord-000248-zueoyesj 1053 76 pathologist pathologist NN cord-000248-zueoyesj 1053 77 's 's POS cord-000248-zueoyesj 1053 78 practice practice NN cord-000248-zueoyesj 1053 79 A a DT cord-000248-zueoyesj 1053 80 comparison comparison NN cord-000248-zueoyesj 1053 81 of of IN cord-000248-zueoyesj 1053 82 interobserver interobserver NN cord-000248-zueoyesj 1053 83 reproducibility reproducibility NN cord-000248-zueoyesj 1053 84 of of IN cord-000248-zueoyesj 1053 85 Gleason Gleason NNP cord-000248-zueoyesj 1053 86 grading grading NN cord-000248-zueoyesj 1053 87 of of IN cord-000248-zueoyesj 1053 88 prostatic prostatic JJ cord-000248-zueoyesj 1053 89 carcinoma carcinoma NN cord-000248-zueoyesj 1053 90 in in IN cord-000248-zueoyesj 1053 91 Japan Japan NNP cord-000248-zueoyesj 1053 92 and and CC cord-000248-zueoyesj 1053 93 the the DT cord-000248-zueoyesj 1053 94 United United NNP cord-000248-zueoyesj 1053 95 States States NNP cord-000248-zueoyesj 1053 96 Cutaneous cutaneous JJ cord-000248-zueoyesj 1053 97 melanoma melanoma NN cord-000248-zueoyesj 1053 98 : : : cord-000248-zueoyesj 1053 99 available available JJ cord-000248-zueoyesj 1053 100 therapy therapy NN cord-000248-zueoyesj 1053 101 for for IN cord-000248-zueoyesj 1053 102 metastatic metastatic JJ cord-000248-zueoyesj 1053 103 disease disease NNP cord-000248-zueoyesj 1053 104 Gene Gene NNP cord-000248-zueoyesj 1053 105 expression expression NN cord-000248-zueoyesj 1053 106 profiling profiling NN cord-000248-zueoyesj 1053 107 identifies identify VBZ cord-000248-zueoyesj 1053 108 clinically clinically RB cord-000248-zueoyesj 1053 109 relevant relevant JJ cord-000248-zueoyesj 1053 110 subtypes subtype NNS cord-000248-zueoyesj 1053 111 of of IN cord-000248-zueoyesj 1053 112 prostate prostate NN cord-000248-zueoyesj 1053 113 cancer cancer NN cord-000248-zueoyesj 1053 114 Revisiting revisit VBG cord-000248-zueoyesj 1053 115 the the DT cord-000248-zueoyesj 1053 116 relation relation NN cord-000248-zueoyesj 1053 117 between between IN cord-000248-zueoyesj 1053 118 species species NN cord-000248-zueoyesj 1053 119 diversity diversity NN cord-000248-zueoyesj 1053 120 and and CC cord-000248-zueoyesj 1053 121 information information NN cord-000248-zueoyesj 1053 122 theory theory NN cord-000248-zueoyesj 1054 1 Differential differential JJ cord-000248-zueoyesj 1054 2 post post JJ cord-000248-zueoyesj 1054 3 - - JJ cord-000248-zueoyesj 1054 4 transcriptional transcriptional JJ cord-000248-zueoyesj 1054 5 regulation regulation NN cord-000248-zueoyesj 1054 6 of of IN cord-000248-zueoyesj 1054 7 two two CD cord-000248-zueoyesj 1054 8 Ink4 Ink4 NNP cord-000248-zueoyesj 1054 9 proteins protein NNS cord-000248-zueoyesj 1054 10 , , , cord-000248-zueoyesj 1055 1 p18(Ink4c p18(ink4c LS cord-000248-zueoyesj 1055 2 ) ) -RRB- cord-000248-zueoyesj 1056 1 and and CC cord-000248-zueoyesj 1056 2 p19(Ink4d p19(ink4d CD cord-000248-zueoyesj 1056 3 ) ) -RRB- cord-000248-zueoyesj 1057 1 INK4 INK4 NNP cord-000248-zueoyesj 1057 2 proteins protein NNS cord-000248-zueoyesj 1057 3 , , , cord-000248-zueoyesj 1057 4 a a DT cord-000248-zueoyesj 1057 5 family family NN cord-000248-zueoyesj 1057 6 of of IN cord-000248-zueoyesj 1057 7 mammalian mammalian JJ cord-000248-zueoyesj 1057 8 CDK CDK NNP cord-000248-zueoyesj 1057 9 inhibitors inhibitor NNS cord-000248-zueoyesj 1057 10 with with IN cord-000248-zueoyesj 1057 11 novel novel JJ cord-000248-zueoyesj 1057 12 biological biological JJ cord-000248-zueoyesj 1057 13 functions function NNS cord-000248-zueoyesj 1057 14 Loss Loss NNP cord-000248-zueoyesj 1057 15 of of IN cord-000248-zueoyesj 1057 16 the the DT cord-000248-zueoyesj 1057 17 forkhead forkhead NNP cord-000248-zueoyesj 1057 18 transcription transcription NN cord-000248-zueoyesj 1057 19 factor factor NN cord-000248-zueoyesj 1058 1 FoxM1 FoxM1 NNP cord-000248-zueoyesj 1058 2 causes cause VBZ cord-000248-zueoyesj 1058 3 centrosome centrosome NN cord-000248-zueoyesj 1058 4 amplification amplification NN cord-000248-zueoyesj 1058 5 and and CC cord-000248-zueoyesj 1058 6 mitotic mitotic JJ cord-000248-zueoyesj 1058 7 catastrophe catastrophe NN cord-000248-zueoyesj 1058 8 FoxM1 FoxM1 NNP cord-000248-zueoyesj 1058 9 is be VBZ cord-000248-zueoyesj 1058 10 required require VBN cord-000248-zueoyesj 1058 11 for for IN cord-000248-zueoyesj 1058 12 execution execution NN cord-000248-zueoyesj 1058 13 of of IN cord-000248-zueoyesj 1058 14 the the DT cord-000248-zueoyesj 1058 15 mitotic mitotic JJ cord-000248-zueoyesj 1058 16 programme programme NN cord-000248-zueoyesj 1058 17 and and CC cord-000248-zueoyesj 1058 18 chromosome chromosome NN cord-000248-zueoyesj 1058 19 stability stability NN cord-000248-zueoyesj 1059 1 The the DT cord-000248-zueoyesj 1059 2 role role NN cord-000248-zueoyesj 1059 3 of of IN cord-000248-zueoyesj 1059 4 the the DT cord-000248-zueoyesj 1059 5 BRCA2 brca2 NN cord-000248-zueoyesj 1059 6 gene gene NN cord-000248-zueoyesj 1059 7 in in IN cord-000248-zueoyesj 1059 8 susceptibility susceptibility NN cord-000248-zueoyesj 1059 9 to to IN cord-000248-zueoyesj 1059 10 prostate prostate NN cord-000248-zueoyesj 1059 11 cancer cancer NN cord-000248-zueoyesj 1059 12 revisited revisit VBD cord-000248-zueoyesj 1059 13 Prostate Prostate NNP cord-000248-zueoyesj 1059 14 cancer cancer NN cord-000248-zueoyesj 1059 15 in in IN cord-000248-zueoyesj 1060 1 male male JJ cord-000248-zueoyesj 1060 2 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1060 3 and and CC cord-000248-zueoyesj 1060 4 BRCA2 BRCA2 NNP cord-000248-zueoyesj 1060 5 mutation mutation NN cord-000248-zueoyesj 1060 6 carriers carrier NNS cord-000248-zueoyesj 1060 7 has have VBZ cord-000248-zueoyesj 1060 8 a a DT cord-000248-zueoyesj 1060 9 more more RBR cord-000248-zueoyesj 1060 10 aggressive aggressive JJ cord-000248-zueoyesj 1060 11 phenotype phenotype NN cord-000248-zueoyesj 1060 12 Down down IN cord-000248-zueoyesj 1060 13 - - HYPH cord-000248-zueoyesj 1060 14 regulation regulation NN cord-000248-zueoyesj 1060 15 of of IN cord-000248-zueoyesj 1060 16 BRCA2 brca2 JJ cord-000248-zueoyesj 1060 17 expression expression NN cord-000248-zueoyesj 1060 18 by by IN cord-000248-zueoyesj 1060 19 collagen collagen NN cord-000248-zueoyesj 1060 20 type type NN cord-000248-zueoyesj 1060 21 I -PRON- PRP cord-000248-zueoyesj 1060 22 promotes promote VBZ cord-000248-zueoyesj 1060 23 prostate prostate NN cord-000248-zueoyesj 1060 24 cancer cancer NN cord-000248-zueoyesj 1060 25 cell cell NN cord-000248-zueoyesj 1060 26 proliferation proliferation NN cord-000248-zueoyesj 1060 27 BRCA2 brca2 IN cord-000248-zueoyesj 1060 28 mutation mutation NN cord-000248-zueoyesj 1060 29 in in IN cord-000248-zueoyesj 1060 30 a a DT cord-000248-zueoyesj 1060 31 family family NN cord-000248-zueoyesj 1060 32 with with IN cord-000248-zueoyesj 1060 33 hereditary hereditary JJ cord-000248-zueoyesj 1060 34 prostate prostate NN cord-000248-zueoyesj 1060 35 cancer cancer NN cord-000248-zueoyesj 1060 36 Loss loss NN cord-000248-zueoyesj 1060 37 of of IN cord-000248-zueoyesj 1060 38 BRCA2 brca2 NN cord-000248-zueoyesj 1060 39 promotes promote VBZ cord-000248-zueoyesj 1060 40 prostate prostate NN cord-000248-zueoyesj 1060 41 cancer cancer NN cord-000248-zueoyesj 1060 42 cell cell NN cord-000248-zueoyesj 1060 43 invasion invasion NN cord-000248-zueoyesj 1060 44 through through IN cord-000248-zueoyesj 1060 45 up up IN cord-000248-zueoyesj 1060 46 - - HYPH cord-000248-zueoyesj 1060 47 regulation regulation NN cord-000248-zueoyesj 1060 48 of of IN cord-000248-zueoyesj 1060 49 matrix matrix NN cord-000248-zueoyesj 1060 50 metalloproteinase-9 metalloproteinase-9 NNP cord-000248-zueoyesj 1060 51 Rapid Rapid NNP cord-000248-zueoyesj 1060 52 progression progression NN cord-000248-zueoyesj 1060 53 of of IN cord-000248-zueoyesj 1060 54 prostate prostate NN cord-000248-zueoyesj 1060 55 cancer cancer NN cord-000248-zueoyesj 1060 56 in in IN cord-000248-zueoyesj 1060 57 men man NNS cord-000248-zueoyesj 1060 58 with with IN cord-000248-zueoyesj 1060 59 a a DT cord-000248-zueoyesj 1060 60 BRCA2 brca2 NN cord-000248-zueoyesj 1060 61 mutation mutation NN cord-000248-zueoyesj 1060 62 Rare Rare NNP cord-000248-zueoyesj 1060 63 germline germline NN cord-000248-zueoyesj 1060 64 mutations mutation NNS cord-000248-zueoyesj 1060 65 in in IN cord-000248-zueoyesj 1060 66 the the DT cord-000248-zueoyesj 1060 67 BRCA2 brca2 NN cord-000248-zueoyesj 1060 68 gene gene NN cord-000248-zueoyesj 1060 69 are be VBP cord-000248-zueoyesj 1060 70 associated associate VBN cord-000248-zueoyesj 1060 71 with with IN cord-000248-zueoyesj 1061 1 early early JJ cord-000248-zueoyesj 1061 2 - - HYPH cord-000248-zueoyesj 1061 3 onset onset NN cord-000248-zueoyesj 1061 4 prostate prostate NN cord-000248-zueoyesj 1061 5 cancer cancer NN cord-000248-zueoyesj 1061 6 CCL2 CCL2 NNP cord-000248-zueoyesj 1061 7 induces induce VBZ cord-000248-zueoyesj 1061 8 prostate prostate NN cord-000248-zueoyesj 1061 9 cancer cancer NN cord-000248-zueoyesj 1061 10 transendothelial transendothelial JJ cord-000248-zueoyesj 1061 11 cell cell NN cord-000248-zueoyesj 1061 12 migration migration NN cord-000248-zueoyesj 1061 13 via via IN cord-000248-zueoyesj 1061 14 activation activation NN cord-000248-zueoyesj 1061 15 of of IN cord-000248-zueoyesj 1061 16 the the DT cord-000248-zueoyesj 1061 17 small small JJ cord-000248-zueoyesj 1061 18 GTPase GTPase NNP cord-000248-zueoyesj 1061 19 Rac Rac NNP cord-000248-zueoyesj 1061 20 Prostate Prostate NNP cord-000248-zueoyesj 1061 21 cancer cancer NN cord-000248-zueoyesj 1062 1 promotes promote VBZ cord-000248-zueoyesj 1062 2 CD11b CD11b VBZ cord-000248-zueoyesj 1062 3 positive positive JJ cord-000248-zueoyesj 1062 4 cells cell NNS cord-000248-zueoyesj 1062 5 to to TO cord-000248-zueoyesj 1062 6 differentiate differentiate VB cord-000248-zueoyesj 1062 7 into into IN cord-000248-zueoyesj 1062 8 osteoclasts osteoclast NNS cord-000248-zueoyesj 1063 1 A a DT cord-000248-zueoyesj 1063 2 destructive destructive JJ cord-000248-zueoyesj 1063 3 cascade cascade NN cord-000248-zueoyesj 1063 4 mediated mediate VBN cord-000248-zueoyesj 1063 5 by by IN cord-000248-zueoyesj 1063 6 CCL2 CCL2 NNP cord-000248-zueoyesj 1063 7 facilitates facilitate VBZ cord-000248-zueoyesj 1063 8 prostate prostate NN cord-000248-zueoyesj 1063 9 cancer cancer NN cord-000248-zueoyesj 1063 10 growth growth NN cord-000248-zueoyesj 1063 11 in in IN cord-000248-zueoyesj 1063 12 bone bone NN cord-000248-zueoyesj 1063 13 CCL2 CCL2 NNP cord-000248-zueoyesj 1063 14 is be VBZ cord-000248-zueoyesj 1063 15 a a DT cord-000248-zueoyesj 1063 16 potent potent JJ cord-000248-zueoyesj 1063 17 regulator regulator NN cord-000248-zueoyesj 1063 18 of of IN cord-000248-zueoyesj 1063 19 prostate prostate NN cord-000248-zueoyesj 1063 20 cancer cancer NN cord-000248-zueoyesj 1063 21 cell cell NN cord-000248-zueoyesj 1063 22 migration migration NN cord-000248-zueoyesj 1063 23 and and CC cord-000248-zueoyesj 1063 24 proliferation proliferation NN cord-000248-zueoyesj 1063 25 CCL2 CCL2 NNP cord-000248-zueoyesj 1063 26 , , , cord-000248-zueoyesj 1063 27 survivin survivin NN cord-000248-zueoyesj 1063 28 and and CC cord-000248-zueoyesj 1063 29 autophagy autophagy NN cord-000248-zueoyesj 1063 30 : : : cord-000248-zueoyesj 1063 31 new new JJ cord-000248-zueoyesj 1063 32 links link NNS cord-000248-zueoyesj 1063 33 with with IN cord-000248-zueoyesj 1063 34 implications implication NNS cord-000248-zueoyesj 1063 35 in in IN cord-000248-zueoyesj 1063 36 human human JJ cord-000248-zueoyesj 1063 37 cancer cancer NN cord-000248-zueoyesj 1063 38 CCL2 CCL2 NNP cord-000248-zueoyesj 1063 39 protects protect VBZ cord-000248-zueoyesj 1063 40 prostate prostate NN cord-000248-zueoyesj 1063 41 cancer cancer NN cord-000248-zueoyesj 1063 42 PC3 PC3 NNP cord-000248-zueoyesj 1063 43 cells cell NNS cord-000248-zueoyesj 1063 44 from from IN cord-000248-zueoyesj 1063 45 autophagic autophagic JJ cord-000248-zueoyesj 1063 46 death death NN cord-000248-zueoyesj 1063 47 via via IN cord-000248-zueoyesj 1063 48 phosphatidylinositol phosphatidylinositol JJ cord-000248-zueoyesj 1063 49 3-kinase 3-kinase CD cord-000248-zueoyesj 1063 50 / / SYM cord-000248-zueoyesj 1063 51 AKT akt NN cord-000248-zueoyesj 1063 52 - - HYPH cord-000248-zueoyesj 1063 53 dependent dependent JJ cord-000248-zueoyesj 1063 54 survivin survivin NN cord-000248-zueoyesj 1063 55 up up IN cord-000248-zueoyesj 1063 56 - - HYPH cord-000248-zueoyesj 1063 57 regulation regulation NN cord-000248-zueoyesj 1063 58 Co co NN cord-000248-zueoyesj 1063 59 - - NN cord-000248-zueoyesj 1063 60 inoculation inoculation NN cord-000248-zueoyesj 1063 61 of of IN cord-000248-zueoyesj 1063 62 prostate prostate NN cord-000248-zueoyesj 1063 63 cancer cancer NN cord-000248-zueoyesj 1063 64 cells cell NNS cord-000248-zueoyesj 1063 65 with with IN cord-000248-zueoyesj 1063 66 U937 U937 NNP cord-000248-zueoyesj 1063 67 enhances enhance VBZ cord-000248-zueoyesj 1063 68 tumor tumor NN cord-000248-zueoyesj 1063 69 growth growth NN cord-000248-zueoyesj 1063 70 and and CC cord-000248-zueoyesj 1063 71 angiogenesis angiogenesis NN cord-000248-zueoyesj 1063 72 in in IN cord-000248-zueoyesj 1063 73 vivo vivo NN cord-000248-zueoyesj 1064 1 PTHrPinduced PTHrPinduced NNP cord-000248-zueoyesj 1064 2 MCP-1 MCP-1 NNP cord-000248-zueoyesj 1064 3 production production NN cord-000248-zueoyesj 1064 4 by by IN cord-000248-zueoyesj 1064 5 human human JJ cord-000248-zueoyesj 1064 6 bone bone NN cord-000248-zueoyesj 1064 7 marrow marrow NN cord-000248-zueoyesj 1064 8 endothelial endothelial JJ cord-000248-zueoyesj 1064 9 cells cell NNS cord-000248-zueoyesj 1064 10 and and CC cord-000248-zueoyesj 1064 11 osteoblasts osteoblast NNS cord-000248-zueoyesj 1064 12 promotes promote VBZ cord-000248-zueoyesj 1064 13 osteoclast osteoclast JJ cord-000248-zueoyesj 1064 14 differentiation differentiation NN cord-000248-zueoyesj 1064 15 and and CC cord-000248-zueoyesj 1064 16 prostate prostate NN cord-000248-zueoyesj 1064 17 cancer cancer NN cord-000248-zueoyesj 1064 18 cell cell NN cord-000248-zueoyesj 1064 19 proliferation proliferation NN cord-000248-zueoyesj 1064 20 and and CC cord-000248-zueoyesj 1064 21 invasion invasion NN cord-000248-zueoyesj 1064 22 in in IN cord-000248-zueoyesj 1064 23 vitro vitro FW cord-000248-zueoyesj 1065 1 Monocyte Monocyte NNP cord-000248-zueoyesj 1065 2 chemotactic chemotactic VBD cord-000248-zueoyesj 1065 3 protein-1 protein-1 NNP cord-000248-zueoyesj 1065 4 mediates mediate VBZ cord-000248-zueoyesj 1065 5 prostate prostate NN cord-000248-zueoyesj 1065 6 cancer cancer NN cord-000248-zueoyesj 1065 7 - - HYPH cord-000248-zueoyesj 1065 8 induced induce VBN cord-000248-zueoyesj 1065 9 bone bone NN cord-000248-zueoyesj 1065 10 resorption resorption NN cord-000248-zueoyesj 1065 11 CCL2 CCL2 NNP cord-000248-zueoyesj 1065 12 as as IN cord-000248-zueoyesj 1065 13 an an DT cord-000248-zueoyesj 1065 14 important important JJ cord-000248-zueoyesj 1065 15 mediator mediator NN cord-000248-zueoyesj 1065 16 of of IN cord-000248-zueoyesj 1065 17 prostate prostate NN cord-000248-zueoyesj 1065 18 cancer cancer NN cord-000248-zueoyesj 1065 19 growth growth NN cord-000248-zueoyesj 1065 20 in in IN cord-000248-zueoyesj 1065 21 vivo vivo NN cord-000248-zueoyesj 1065 22 through through IN cord-000248-zueoyesj 1065 23 the the DT cord-000248-zueoyesj 1065 24 regulation regulation NN cord-000248-zueoyesj 1065 25 of of IN cord-000248-zueoyesj 1065 26 macrophage macrophage NN cord-000248-zueoyesj 1065 27 infiltration infiltration NN cord-000248-zueoyesj 1065 28 Targeting target VBG cord-000248-zueoyesj 1065 29 CCL2 CCL2 NNP cord-000248-zueoyesj 1065 30 with with IN cord-000248-zueoyesj 1065 31 systemic systemic JJ cord-000248-zueoyesj 1065 32 delivery delivery NN cord-000248-zueoyesj 1065 33 of of IN cord-000248-zueoyesj 1065 34 neutralizing neutralize VBG cord-000248-zueoyesj 1065 35 antibodies antibody NNS cord-000248-zueoyesj 1065 36 induces induce VBZ cord-000248-zueoyesj 1065 37 prostate prostate NN cord-000248-zueoyesj 1065 38 cancer cancer NN cord-000248-zueoyesj 1065 39 tumor tumor NN cord-000248-zueoyesj 1065 40 regression regression NN cord-000248-zueoyesj 1065 41 in in IN cord-000248-zueoyesj 1065 42 vivo vivo NNP cord-000248-zueoyesj 1065 43 PAR1-mediated PAR1-mediated NNP cord-000248-zueoyesj 1065 44 RhoA RhoA NNP cord-000248-zueoyesj 1065 45 activation activation NN cord-000248-zueoyesj 1065 46 facilitates facilitate VBZ cord-000248-zueoyesj 1065 47 CCL2-induced ccl2-induced JJ cord-000248-zueoyesj 1065 48 chemotaxis chemotaxis NN cord-000248-zueoyesj 1065 49 in in IN cord-000248-zueoyesj 1065 50 PC-3 PC-3 NNP cord-000248-zueoyesj 1065 51 cells cell NNS cord-000248-zueoyesj 1065 52 Identification identification NN cord-000248-zueoyesj 1065 53 of of IN cord-000248-zueoyesj 1065 54 differentially differentially RB cord-000248-zueoyesj 1065 55 expressed express VBN cord-000248-zueoyesj 1065 56 genes gene NNS cord-000248-zueoyesj 1065 57 in in IN cord-000248-zueoyesj 1065 58 organ organ NN cord-000248-zueoyesj 1065 59 - - HYPH cord-000248-zueoyesj 1065 60 confined confine VBN cord-000248-zueoyesj 1065 61 prostate prostate NN cord-000248-zueoyesj 1065 62 cancer cancer NN cord-000248-zueoyesj 1065 63 by by IN cord-000248-zueoyesj 1065 64 gene gene NN cord-000248-zueoyesj 1065 65 expression expression NN cord-000248-zueoyesj 1065 66 array array NN cord-000248-zueoyesj 1066 1 The the DT cord-000248-zueoyesj 1066 2 role role NN cord-000248-zueoyesj 1066 3 of of IN cord-000248-zueoyesj 1066 4 c c NN cord-000248-zueoyesj 1066 5 - - : cord-000248-zueoyesj 1066 6 Jun Jun NNP cord-000248-zueoyesj 1066 7 and and CC cord-000248-zueoyesj 1066 8 c c NNP cord-000248-zueoyesj 1066 9 - - : cord-000248-zueoyesj 1066 10 Fos Fos NNP cord-000248-zueoyesj 1066 11 expression expression NN cord-000248-zueoyesj 1066 12 in in IN cord-000248-zueoyesj 1066 13 androgen androgen NN cord-000248-zueoyesj 1066 14 - - HYPH cord-000248-zueoyesj 1066 15 independent independent JJ cord-000248-zueoyesj 1066 16 prostate prostate NN cord-000248-zueoyesj 1066 17 cancer cancer NN cord-000248-zueoyesj 1066 18 Molecular Molecular NNP cord-000248-zueoyesj 1066 19 Cancer Cancer NNP cord-000248-zueoyesj 1066 20 Phenotype Phenotype NNP cord-000248-zueoyesj 1066 21 in in IN cord-000248-zueoyesj 1066 22 Normal normal JJ cord-000248-zueoyesj 1066 23 Prostate Prostate NNP cord-000248-zueoyesj 1066 24 Tissue Tissue NNP cord-000248-zueoyesj 1066 25 Activator Activator NNP cord-000248-zueoyesj 1066 26 protein-1 protein-1 NNP cord-000248-zueoyesj 1066 27 transcription transcription NN cord-000248-zueoyesj 1066 28 factors factor NNS cord-000248-zueoyesj 1066 29 are be VBP cord-000248-zueoyesj 1066 30 associated associate VBN cord-000248-zueoyesj 1066 31 with with IN cord-000248-zueoyesj 1066 32 progression progression NN cord-000248-zueoyesj 1066 33 and and CC cord-000248-zueoyesj 1066 34 recurrence recurrence NN cord-000248-zueoyesj 1066 35 of of IN cord-000248-zueoyesj 1066 36 prostate prostate NN cord-000248-zueoyesj 1066 37 cancer cancer NN cord-000248-zueoyesj 1066 38 Raf-1 Raf-1 NNP cord-000248-zueoyesj 1066 39 expression expression NN cord-000248-zueoyesj 1066 40 may may MD cord-000248-zueoyesj 1066 41 influence influence VB cord-000248-zueoyesj 1066 42 progression progression NN cord-000248-zueoyesj 1066 43 to to IN cord-000248-zueoyesj 1066 44 androgen androgen NN cord-000248-zueoyesj 1067 1 insensitive insensitive JJ cord-000248-zueoyesj 1067 2 prostate prostate NN cord-000248-zueoyesj 1067 3 cancer cancer NN cord-000248-zueoyesj 1067 4 A a DT cord-000248-zueoyesj 1067 5 mechanism mechanism NN cord-000248-zueoyesj 1067 6 of of IN cord-000248-zueoyesj 1067 7 AP-1 AP-1 NNP cord-000248-zueoyesj 1067 8 suppression suppression NN cord-000248-zueoyesj 1067 9 through through IN cord-000248-zueoyesj 1067 10 interaction interaction NN cord-000248-zueoyesj 1067 11 of of IN cord-000248-zueoyesj 1067 12 c c NN cord-000248-zueoyesj 1067 13 - - : cord-000248-zueoyesj 1067 14 Fos Fos NNP cord-000248-zueoyesj 1067 15 with with IN cord-000248-zueoyesj 1067 16 lamin lamin NN cord-000248-zueoyesj 1067 17 A A NNP cord-000248-zueoyesj 1067 18 / / SYM cord-000248-zueoyesj 1067 19 C C NNP cord-000248-zueoyesj 1067 20 Fast fast JJ cord-000248-zueoyesj 1067 21 regulation regulation NN cord-000248-zueoyesj 1067 22 of of IN cord-000248-zueoyesj 1067 23 AP-1 AP-1 NNP cord-000248-zueoyesj 1067 24 activity activity NN cord-000248-zueoyesj 1067 25 through through IN cord-000248-zueoyesj 1067 26 interaction interaction NN cord-000248-zueoyesj 1067 27 of of IN cord-000248-zueoyesj 1067 28 lamin lamin NNP cord-000248-zueoyesj 1067 29 A A NNP cord-000248-zueoyesj 1067 30 / / SYM cord-000248-zueoyesj 1067 31 C C NNP cord-000248-zueoyesj 1067 32 , , , cord-000248-zueoyesj 1067 33 ERK1/2 ERK1/2 NNP cord-000248-zueoyesj 1067 34 , , , cord-000248-zueoyesj 1067 35 and and CC cord-000248-zueoyesj 1067 36 c c LS cord-000248-zueoyesj 1067 37 - - : cord-000248-zueoyesj 1067 38 Fos Fos NNP cord-000248-zueoyesj 1067 39 at at IN cord-000248-zueoyesj 1067 40 the the DT cord-000248-zueoyesj 1067 41 nuclear nuclear JJ cord-000248-zueoyesj 1067 42 envelope envelope NN cord-000248-zueoyesj 1068 1 The the DT cord-000248-zueoyesj 1068 2 role role NN cord-000248-zueoyesj 1068 3 of of IN cord-000248-zueoyesj 1068 4 Sox9 Sox9 NNP cord-000248-zueoyesj 1068 5 in in IN cord-000248-zueoyesj 1068 6 prostate prostate NN cord-000248-zueoyesj 1068 7 development development NN cord-000248-zueoyesj 1069 1 Sox9 Sox9 NNP cord-000248-zueoyesj 1069 2 is be VBZ cord-000248-zueoyesj 1069 3 required require VBN cord-000248-zueoyesj 1069 4 for for IN cord-000248-zueoyesj 1069 5 prostate prostate NN cord-000248-zueoyesj 1069 6 development development NN cord-000248-zueoyesj 1069 7 Sexual sexual JJ cord-000248-zueoyesj 1069 8 differentiation differentiation NN cord-000248-zueoyesj 1070 1 Androgen androgen NN cord-000248-zueoyesj 1070 2 - - HYPH cord-000248-zueoyesj 1070 3 induced induce VBN cord-000248-zueoyesj 1070 4 programs program NNS cord-000248-zueoyesj 1070 5 for for IN cord-000248-zueoyesj 1070 6 prostate prostate NN cord-000248-zueoyesj 1070 7 epithelial epithelial JJ cord-000248-zueoyesj 1070 8 growth growth NN cord-000248-zueoyesj 1070 9 and and CC cord-000248-zueoyesj 1070 10 invasion invasion NN cord-000248-zueoyesj 1070 11 arise arise VBP cord-000248-zueoyesj 1070 12 in in IN cord-000248-zueoyesj 1070 13 embryogenesis embryogenesis NN cord-000248-zueoyesj 1070 14 and and CC cord-000248-zueoyesj 1070 15 are be VBP cord-000248-zueoyesj 1070 16 reactivated reactivate VBN cord-000248-zueoyesj 1070 17 in in IN cord-000248-zueoyesj 1070 18 cancer cancer NN cord-000248-zueoyesj 1070 19 SOX9 SOX9 NNP cord-000248-zueoyesj 1070 20 is be VBZ cord-000248-zueoyesj 1070 21 expressed express VBN cord-000248-zueoyesj 1070 22 in in IN cord-000248-zueoyesj 1070 23 normal normal JJ cord-000248-zueoyesj 1070 24 prostate prostate NN cord-000248-zueoyesj 1070 25 basal basal NN cord-000248-zueoyesj 1070 26 cells cell NNS cord-000248-zueoyesj 1070 27 and and CC cord-000248-zueoyesj 1070 28 regulates regulate VBZ cord-000248-zueoyesj 1070 29 androgen androgen NN cord-000248-zueoyesj 1070 30 receptor receptor NN cord-000248-zueoyesj 1070 31 expression expression NN cord-000248-zueoyesj 1070 32 in in IN cord-000248-zueoyesj 1070 33 prostate prostate NN cord-000248-zueoyesj 1070 34 cancer cancer NN cord-000248-zueoyesj 1070 35 cells cell NNS cord-000248-zueoyesj 1071 1 Inducible inducible JJ cord-000248-zueoyesj 1071 2 FGFR-1 fgfr-1 NN cord-000248-zueoyesj 1071 3 activation activation NN cord-000248-zueoyesj 1071 4 leads lead VBZ cord-000248-zueoyesj 1071 5 to to IN cord-000248-zueoyesj 1071 6 irreversible irreversible JJ cord-000248-zueoyesj 1071 7 prostate prostate NN cord-000248-zueoyesj 1071 8 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1071 9 and and CC cord-000248-zueoyesj 1071 10 an an DT cord-000248-zueoyesj 1071 11 epithelial epithelial NN cord-000248-zueoyesj 1071 12 - - HYPH cord-000248-zueoyesj 1071 13 to to IN cord-000248-zueoyesj 1071 14 - - HYPH cord-000248-zueoyesj 1071 15 mesenchymal mesenchymal JJ cord-000248-zueoyesj 1071 16 transition transition NN cord-000248-zueoyesj 1071 17 SOX9 SOX9 NNP cord-000248-zueoyesj 1071 18 is be VBZ cord-000248-zueoyesj 1071 19 expressed express VBN cord-000248-zueoyesj 1071 20 in in IN cord-000248-zueoyesj 1071 21 human human JJ cord-000248-zueoyesj 1071 22 fetal fetal JJ cord-000248-zueoyesj 1071 23 prostate prostate NN cord-000248-zueoyesj 1071 24 epithelium epithelium NN cord-000248-zueoyesj 1071 25 and and CC cord-000248-zueoyesj 1071 26 enhances enhance VBZ cord-000248-zueoyesj 1071 27 prostate prostate NN cord-000248-zueoyesj 1071 28 cancer cancer NN cord-000248-zueoyesj 1071 29 invasion invasion NN cord-000248-zueoyesj 1071 30 Calcification calcification NN cord-000248-zueoyesj 1071 31 of of IN cord-000248-zueoyesj 1071 32 multipotent multipotent JJ cord-000248-zueoyesj 1071 33 prostate prostate NN cord-000248-zueoyesj 1071 34 tumor tumor NN cord-000248-zueoyesj 1071 35 endothelium endothelium NN cord-000248-zueoyesj 1072 1 Multivariate multivariate JJ cord-000248-zueoyesj 1072 2 gene gene NN cord-000248-zueoyesj 1072 3 expression expression NN cord-000248-zueoyesj 1072 4 analysis analysis NN cord-000248-zueoyesj 1072 5 reveals reveal VBZ cord-000248-zueoyesj 1072 6 functional functional JJ cord-000248-zueoyesj 1072 7 connectivity connectivity NN cord-000248-zueoyesj 1072 8 changes change NNS cord-000248-zueoyesj 1072 9 between between IN cord-000248-zueoyesj 1072 10 normal normal JJ cord-000248-zueoyesj 1072 11 / / SYM cord-000248-zueoyesj 1072 12 tumoral tumoral JJ cord-000248-zueoyesj 1072 13 prostates prostates NNPS cord-000248-zueoyesj 1072 14 PSA PSA NNP cord-000248-zueoyesj 1072 15 response response NN cord-000248-zueoyesj 1072 16 signatures signature NNS cord-000248-zueoyesj 1072 17 -a -a : cord-000248-zueoyesj 1072 18 powerful powerful JJ cord-000248-zueoyesj 1072 19 new new JJ cord-000248-zueoyesj 1072 20 prognostic prognostic JJ cord-000248-zueoyesj 1072 21 indicator indicator NN cord-000248-zueoyesj 1072 22 after after IN cord-000248-zueoyesj 1072 23 radiation radiation NN cord-000248-zueoyesj 1072 24 for for IN cord-000248-zueoyesj 1072 25 prostate prostate NN cord-000248-zueoyesj 1072 26 cancer cancer NN cord-000248-zueoyesj 1072 27 ? ? . cord-000248-zueoyesj 1073 1 First first JJ cord-000248-zueoyesj 1073 2 results result NNS cord-000248-zueoyesj 1073 3 of of IN cord-000248-zueoyesj 1073 4 PET/ PET/ NNP cord-000248-zueoyesj 1073 5 CT CT NNP cord-000248-zueoyesj 1073 6 - - HYPH cord-000248-zueoyesj 1073 7 guided guide VBN cord-000248-zueoyesj 1073 8 secondary secondary JJ cord-000248-zueoyesj 1073 9 lymph lymph NN cord-000248-zueoyesj 1073 10 node node NN cord-000248-zueoyesj 1073 11 surgery surgery NN cord-000248-zueoyesj 1073 12 on on IN cord-000248-zueoyesj 1073 13 patients patient NNS cord-000248-zueoyesj 1073 14 with with IN cord-000248-zueoyesj 1073 15 a a DT cord-000248-zueoyesj 1073 16 PSA PSA NNP cord-000248-zueoyesj 1073 17 relapse relapse NN cord-000248-zueoyesj 1073 18 after after IN cord-000248-zueoyesj 1073 19 radical radical JJ cord-000248-zueoyesj 1073 20 prostatectomy prostatectomy NN cord-000248-zueoyesj 1073 21 Vascular vascular JJ cord-000248-zueoyesj 1073 22 endothelial endothelial JJ cord-000248-zueoyesj 1073 23 growth growth NN cord-000248-zueoyesj 1073 24 factor factor NN cord-000248-zueoyesj 1073 25 receptor receptor NN cord-000248-zueoyesj 1073 26 1 1 CD cord-000248-zueoyesj 1073 27 expression expression NN cord-000248-zueoyesj 1073 28 in in IN cord-000248-zueoyesj 1073 29 pelvic pelvic JJ cord-000248-zueoyesj 1073 30 lymph lymph NN cord-000248-zueoyesj 1073 31 nodes node NNS cord-000248-zueoyesj 1073 32 predicts predict VBZ cord-000248-zueoyesj 1073 33 the the DT cord-000248-zueoyesj 1073 34 risk risk NN cord-000248-zueoyesj 1073 35 of of IN cord-000248-zueoyesj 1073 36 cancer cancer NN cord-000248-zueoyesj 1073 37 progression progression NN cord-000248-zueoyesj 1073 38 after after IN cord-000248-zueoyesj 1073 39 radical radical JJ cord-000248-zueoyesj 1073 40 prostatectomy prostatectomy NN cord-000248-zueoyesj 1073 41 Prostate prostate NN cord-000248-zueoyesj 1073 42 cancer cancer NN cord-000248-zueoyesj 1073 43 patients patient NNS cord-000248-zueoyesj 1073 44 with with IN cord-000248-zueoyesj 1073 45 lymph lymph NN cord-000248-zueoyesj 1073 46 node node NN cord-000248-zueoyesj 1073 47 metastasis metastasis NN cord-000248-zueoyesj 1073 48 Radioisotope radioisotope NN cord-000248-zueoyesj 1073 49 guided guide VBD cord-000248-zueoyesj 1073 50 sentinel sentinel JJ cord-000248-zueoyesj 1073 51 lymph lymph NN cord-000248-zueoyesj 1073 52 node node NN cord-000248-zueoyesj 1073 53 dissection dissection NN cord-000248-zueoyesj 1073 54 in in IN cord-000248-zueoyesj 1073 55 patients patient NNS cord-000248-zueoyesj 1073 56 with with IN cord-000248-zueoyesj 1073 57 localized localized JJ cord-000248-zueoyesj 1073 58 prostate prostate NN cord-000248-zueoyesj 1073 59 cancer cancer NN cord-000248-zueoyesj 1073 60 : : : cord-000248-zueoyesj 1073 61 results result NNS cord-000248-zueoyesj 1073 62 of of IN cord-000248-zueoyesj 1073 63 the the DT cord-000248-zueoyesj 1073 64 first first JJ cord-000248-zueoyesj 1073 65 100 100 CD cord-000248-zueoyesj 1073 66 cases case NNS cord-000248-zueoyesj 1073 67 Risk risk VBP cord-000248-zueoyesj 1073 68 stratification stratification NN cord-000248-zueoyesj 1073 69 for for IN cord-000248-zueoyesj 1073 70 positive positive JJ cord-000248-zueoyesj 1073 71 lymph lymph NN cord-000248-zueoyesj 1073 72 nodes node NNS cord-000248-zueoyesj 1073 73 in in IN cord-000248-zueoyesj 1073 74 prostate prostate NN cord-000248-zueoyesj 1073 75 cancer cancer NN cord-000248-zueoyesj 1073 76 Use use NN cord-000248-zueoyesj 1073 77 of of IN cord-000248-zueoyesj 1073 78 preoperative preoperative JJ cord-000248-zueoyesj 1073 79 plasma plasma NN cord-000248-zueoyesj 1073 80 endoglin endoglin NN cord-000248-zueoyesj 1073 81 for for IN cord-000248-zueoyesj 1073 82 prediction prediction NN cord-000248-zueoyesj 1073 83 of of IN cord-000248-zueoyesj 1073 84 lymph lymph NN cord-000248-zueoyesj 1073 85 node node NN cord-000248-zueoyesj 1073 86 metastasis metastasis NN cord-000248-zueoyesj 1073 87 in in IN cord-000248-zueoyesj 1073 88 patients patient NNS cord-000248-zueoyesj 1073 89 with with IN cord-000248-zueoyesj 1073 90 clinically clinically RB cord-000248-zueoyesj 1073 91 localized localized JJ cord-000248-zueoyesj 1073 92 prostate prostate NN cord-000248-zueoyesj 1073 93 cancer cancer NN cord-000248-zueoyesj 1074 1 The the DT cord-000248-zueoyesj 1074 2 rate rate NN cord-000248-zueoyesj 1074 3 of of IN cord-000248-zueoyesj 1074 4 lymph lymph NN cord-000248-zueoyesj 1074 5 node node NN cord-000248-zueoyesj 1074 6 invasion invasion NN cord-000248-zueoyesj 1074 7 ( ( -LRB- cord-000248-zueoyesj 1074 8 LNI LNI NNP cord-000248-zueoyesj 1074 9 ) ) -RRB- cord-000248-zueoyesj 1074 10 in in IN cord-000248-zueoyesj 1074 11 men man NNS cord-000248-zueoyesj 1074 12 with with IN cord-000248-zueoyesj 1074 13 PSA PSA NNP cord-000248-zueoyesj 1074 14 values value NNS cord-000248-zueoyesj 1074 15 less less JJR cord-000248-zueoyesj 1074 16 than than IN cord-000248-zueoyesj 1074 17 10 10 CD cord-000248-zueoyesj 1074 18 ng ng NN cord-000248-zueoyesj 1074 19 / / SYM cord-000248-zueoyesj 1074 20 ml ml CC cord-000248-zueoyesj 1074 21 Pelvic pelvic JJ cord-000248-zueoyesj 1074 22 lymph lymph NN cord-000248-zueoyesj 1074 23 node node NN cord-000248-zueoyesj 1074 24 irradiation irradiation NN cord-000248-zueoyesj 1074 25 for for IN cord-000248-zueoyesj 1074 26 prostate prostate NN cord-000248-zueoyesj 1074 27 cancer cancer NN cord-000248-zueoyesj 1074 28 : : : cord-000248-zueoyesj 1074 29 who who WP cord-000248-zueoyesj 1074 30 , , , cord-000248-zueoyesj 1074 31 why why WRB cord-000248-zueoyesj 1074 32 , , , cord-000248-zueoyesj 1074 33 and and CC cord-000248-zueoyesj 1074 34 when when WRB cord-000248-zueoyesj 1074 35 ? ? . cord-000248-zueoyesj 1075 1 The the DT cord-000248-zueoyesj 1075 2 role role NN cord-000248-zueoyesj 1075 3 of of IN cord-000248-zueoyesj 1075 4 P501S P501S NNP cord-000248-zueoyesj 1075 5 and and CC cord-000248-zueoyesj 1075 6 PSA PSA NNP cord-000248-zueoyesj 1075 7 in in IN cord-000248-zueoyesj 1075 8 the the DT cord-000248-zueoyesj 1075 9 diagnosis diagnosis NN cord-000248-zueoyesj 1075 10 of of IN cord-000248-zueoyesj 1075 11 metastatic metastatic JJ cord-000248-zueoyesj 1075 12 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1075 13 of of IN cord-000248-zueoyesj 1075 14 the the DT cord-000248-zueoyesj 1075 15 prostate prostate NN cord-000248-zueoyesj 1075 16 Detection detection NN cord-000248-zueoyesj 1075 17 and and CC cord-000248-zueoyesj 1075 18 management management NN cord-000248-zueoyesj 1075 19 of of IN cord-000248-zueoyesj 1075 20 isolated isolate VBN cord-000248-zueoyesj 1075 21 lymph lymph NN cord-000248-zueoyesj 1075 22 node node NN cord-000248-zueoyesj 1075 23 recurrence recurrence NN cord-000248-zueoyesj 1075 24 in in IN cord-000248-zueoyesj 1075 25 patients patient NNS cord-000248-zueoyesj 1075 26 with with IN cord-000248-zueoyesj 1075 27 PSA PSA NNP cord-000248-zueoyesj 1075 28 relapse relapse NN cord-000248-zueoyesj 1075 29 Significance significance NN cord-000248-zueoyesj 1075 30 of of IN cord-000248-zueoyesj 1075 31 micrometastases micrometastase NNS cord-000248-zueoyesj 1075 32 in in IN cord-000248-zueoyesj 1075 33 pelvic pelvic JJ cord-000248-zueoyesj 1075 34 lymph lymph NN cord-000248-zueoyesj 1075 35 nodes node NNS cord-000248-zueoyesj 1075 36 detected detect VBN cord-000248-zueoyesj 1075 37 by by IN cord-000248-zueoyesj 1075 38 real real JJ cord-000248-zueoyesj 1075 39 - - HYPH cord-000248-zueoyesj 1075 40 time time NN cord-000248-zueoyesj 1075 41 reverse reverse JJ cord-000248-zueoyesj 1075 42 transcriptase transcriptase NN cord-000248-zueoyesj 1075 43 polymerase polymerase NN cord-000248-zueoyesj 1075 44 chain chain NN cord-000248-zueoyesj 1075 45 reaction reaction NN cord-000248-zueoyesj 1075 46 in in IN cord-000248-zueoyesj 1075 47 patients patient NNS cord-000248-zueoyesj 1075 48 with with IN cord-000248-zueoyesj 1075 49 clinically clinically RB cord-000248-zueoyesj 1075 50 localized localized JJ cord-000248-zueoyesj 1075 51 prostate prostate NN cord-000248-zueoyesj 1075 52 cancer cancer NN cord-000248-zueoyesj 1075 53 undergoing undergo VBG cord-000248-zueoyesj 1075 54 radical radical JJ cord-000248-zueoyesj 1075 55 prostatectomy prostatectomy NN cord-000248-zueoyesj 1075 56 after after IN cord-000248-zueoyesj 1075 57 neoadjuvant neoadjuvant JJ cord-000248-zueoyesj 1075 58 hormonal hormonal JJ cord-000248-zueoyesj 1075 59 therapy therapy NN cord-000248-zueoyesj 1076 1 18F]fluorocholine 18f]fluorocholine CD cord-000248-zueoyesj 1076 2 PET PET NNP cord-000248-zueoyesj 1076 3 / / SYM cord-000248-zueoyesj 1076 4 CT CT NNP cord-000248-zueoyesj 1076 5 imaging imaging NN cord-000248-zueoyesj 1076 6 for for IN cord-000248-zueoyesj 1076 7 the the DT cord-000248-zueoyesj 1076 8 detection detection NN cord-000248-zueoyesj 1076 9 of of IN cord-000248-zueoyesj 1076 10 recurrent recurrent JJ cord-000248-zueoyesj 1076 11 prostate prostate NN cord-000248-zueoyesj 1076 12 cancer cancer NN cord-000248-zueoyesj 1076 13 at at IN cord-000248-zueoyesj 1076 14 PSA PSA NNP cord-000248-zueoyesj 1076 15 relapse relapse NN cord-000248-zueoyesj 1076 16 : : : cord-000248-zueoyesj 1076 17 experience experience NN cord-000248-zueoyesj 1076 18 in in IN cord-000248-zueoyesj 1076 19 100 100 CD cord-000248-zueoyesj 1076 20 consecutive consecutive JJ cord-000248-zueoyesj 1076 21 patients patient NNS cord-000248-zueoyesj 1076 22 Incidence incidence NN cord-000248-zueoyesj 1076 23 of of IN cord-000248-zueoyesj 1076 24 positive positive JJ cord-000248-zueoyesj 1076 25 pelvic pelvic JJ cord-000248-zueoyesj 1076 26 lymph lymph NN cord-000248-zueoyesj 1076 27 nodes node NNS cord-000248-zueoyesj 1076 28 in in IN cord-000248-zueoyesj 1076 29 patients patient NNS cord-000248-zueoyesj 1076 30 with with IN cord-000248-zueoyesj 1076 31 prostate prostate NN cord-000248-zueoyesj 1076 32 cancer cancer NN cord-000248-zueoyesj 1076 33 , , , cord-000248-zueoyesj 1076 34 a a DT cord-000248-zueoyesj 1076 35 prostate prostate NN cord-000248-zueoyesj 1076 36 - - HYPH cord-000248-zueoyesj 1076 37 specific specific JJ cord-000248-zueoyesj 1076 38 antigen antigen NN cord-000248-zueoyesj 1076 39 ( ( -LRB- cord-000248-zueoyesj 1076 40 PSA PSA NNP cord-000248-zueoyesj 1076 41 ) ) -RRB- cord-000248-zueoyesj 1076 42 level level NN cord-000248-zueoyesj 1076 43 of of IN cord-000248-zueoyesj 1076 44 , , , cord-000248-zueoyesj 1076 45 or or CC cord-000248-zueoyesj 1076 46 = = SYM cord-000248-zueoyesj 1076 47 10 10 CD cord-000248-zueoyesj 1076 48 ng ng NNP cord-000248-zueoyesj 1076 49 / / SYM cord-000248-zueoyesj 1076 50 mL ml NN cord-000248-zueoyesj 1076 51 and and CC cord-000248-zueoyesj 1076 52 biopsy biopsy NN cord-000248-zueoyesj 1076 53 Gleason Gleason NNP cord-000248-zueoyesj 1076 54 score score NN cord-000248-zueoyesj 1076 55 of of IN cord-000248-zueoyesj 1076 56 , , , cord-000248-zueoyesj 1076 57 or or CC cord-000248-zueoyesj 1076 58 = = SYM cord-000248-zueoyesj 1076 59 6 6 CD cord-000248-zueoyesj 1076 60 , , , cord-000248-zueoyesj 1076 61 and and CC cord-000248-zueoyesj 1076 62 their -PRON- PRP$ cord-000248-zueoyesj 1076 63 influence influence NN cord-000248-zueoyesj 1076 64 on on IN cord-000248-zueoyesj 1076 65 PSA PSA NNP cord-000248-zueoyesj 1076 66 progression progression NN cord-000248-zueoyesj 1076 67 - - HYPH cord-000248-zueoyesj 1076 68 free free JJ cord-000248-zueoyesj 1076 69 survival survival NN cord-000248-zueoyesj 1076 70 after after IN cord-000248-zueoyesj 1076 71 radical radical JJ cord-000248-zueoyesj 1076 72 prostatectomy prostatectomy NN cord-000248-zueoyesj 1076 73 Histopathological Histopathological NNP cord-000248-zueoyesj 1076 74 evaluation evaluation NN cord-000248-zueoyesj 1076 75 of of IN cord-000248-zueoyesj 1076 76 radical radical JJ cord-000248-zueoyesj 1076 77 prostatectomy prostatectomy NN cord-000248-zueoyesj 1076 78 in in IN cord-000248-zueoyesj 1076 79 the the DT cord-000248-zueoyesj 1076 80 treatment treatment NN cord-000248-zueoyesj 1076 81 of of IN cord-000248-zueoyesj 1076 82 localized localized JJ cord-000248-zueoyesj 1076 83 prostate prostate NN cord-000248-zueoyesj 1076 84 cancer cancer NN cord-000248-zueoyesj 1076 85 Disease Disease NNP cord-000248-zueoyesj 1076 86 progression progression NN cord-000248-zueoyesj 1076 87 and and CC cord-000248-zueoyesj 1076 88 survival survival NN cord-000248-zueoyesj 1076 89 in in IN cord-000248-zueoyesj 1076 90 patients patient NNS cord-000248-zueoyesj 1076 91 with with IN cord-000248-zueoyesj 1076 92 prostate prostate NN cord-000248-zueoyesj 1076 93 carcinoma carcinoma NN cord-000248-zueoyesj 1076 94 and and CC cord-000248-zueoyesj 1076 95 positive positive JJ cord-000248-zueoyesj 1076 96 lymph lymph NN cord-000248-zueoyesj 1076 97 nodes node NNS cord-000248-zueoyesj 1076 98 after after IN cord-000248-zueoyesj 1076 99 radical radical JJ cord-000248-zueoyesj 1076 100 retropubic retropubic JJ cord-000248-zueoyesj 1076 101 prostatectomy prostatectomy NN cord-000248-zueoyesj 1077 1 Is be VBZ cord-000248-zueoyesj 1077 2 pelvic pelvic JJ cord-000248-zueoyesj 1077 3 lymph lymph NN cord-000248-zueoyesj 1077 4 node node NN cord-000248-zueoyesj 1077 5 dissection dissection NN cord-000248-zueoyesj 1077 6 necessary necessary JJ cord-000248-zueoyesj 1077 7 in in IN cord-000248-zueoyesj 1077 8 patients patient NNS cord-000248-zueoyesj 1077 9 with with IN cord-000248-zueoyesj 1077 10 a a DT cord-000248-zueoyesj 1077 11 serum serum NN cord-000248-zueoyesj 1077 12 PSA,10ng psa,10ng NN cord-000248-zueoyesj 1078 1 /ml /ml NFP cord-000248-zueoyesj 1078 2 undergoing undergo VBG cord-000248-zueoyesj 1078 3 radical radical JJ cord-000248-zueoyesj 1078 4 prostatectomy prostatectomy NN cord-000248-zueoyesj 1078 5 for for IN cord-000248-zueoyesj 1078 6 prostate prostate NN cord-000248-zueoyesj 1078 7 cancer cancer NN cord-000248-zueoyesj 1078 8 ? ? . cord-000248-zueoyesj 1079 1 Usefulness usefulness NN cord-000248-zueoyesj 1079 2 of of IN cord-000248-zueoyesj 1079 3 the the DT cord-000248-zueoyesj 1079 4 nadir nadir JJ cord-000248-zueoyesj 1079 5 value value NN cord-000248-zueoyesj 1079 6 of of IN cord-000248-zueoyesj 1079 7 serum serum NN cord-000248-zueoyesj 1079 8 prostate prostate NN cord-000248-zueoyesj 1079 9 - - HYPH cord-000248-zueoyesj 1079 10 specific specific JJ cord-000248-zueoyesj 1079 11 antigen antigen NN cord-000248-zueoyesj 1079 12 measured measure VBN cord-000248-zueoyesj 1079 13 by by IN cord-000248-zueoyesj 1079 14 an an DT cord-000248-zueoyesj 1079 15 ultrasensitive ultrasensitive JJ cord-000248-zueoyesj 1079 16 assay assay NN cord-000248-zueoyesj 1079 17 as as IN cord-000248-zueoyesj 1079 18 a a DT cord-000248-zueoyesj 1079 19 predictor predictor NN cord-000248-zueoyesj 1079 20 of of IN cord-000248-zueoyesj 1079 21 biochemical biochemical JJ cord-000248-zueoyesj 1079 22 recurrence recurrence NN cord-000248-zueoyesj 1079 23 after after IN cord-000248-zueoyesj 1079 24 radical radical JJ cord-000248-zueoyesj 1079 25 prostatectomy prostatectomy NN cord-000248-zueoyesj 1079 26 for for IN cord-000248-zueoyesj 1079 27 clinically clinically RB cord-000248-zueoyesj 1079 28 localized localized JJ cord-000248-zueoyesj 1079 29 prostate prostate NN cord-000248-zueoyesj 1079 30 cancer cancer NN cord-000248-zueoyesj 1079 31 Lymphovascular Lymphovascular NNP cord-000248-zueoyesj 1079 32 invasion invasion NN cord-000248-zueoyesj 1079 33 is be VBZ cord-000248-zueoyesj 1079 34 an an DT cord-000248-zueoyesj 1079 35 independent independent JJ cord-000248-zueoyesj 1079 36 prognostic prognostic JJ cord-000248-zueoyesj 1079 37 factor factor NN cord-000248-zueoyesj 1079 38 in in IN cord-000248-zueoyesj 1079 39 prostatic prostatic JJ cord-000248-zueoyesj 1079 40 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1079 41 Lymph lymph NN cord-000248-zueoyesj 1079 42 node node NN cord-000248-zueoyesj 1079 43 staging stage VBG cord-000248-zueoyesj 1079 44 in in IN cord-000248-zueoyesj 1079 45 prostatic prostatic JJ cord-000248-zueoyesj 1079 46 carcinoma carcinoma NN cord-000248-zueoyesj 1079 47 revisited revisit VBD cord-000248-zueoyesj 1079 48 Prostate prostate JJ cord-000248-zueoyesj 1079 49 specific specific JJ cord-000248-zueoyesj 1079 50 antigen antigen NN cord-000248-zueoyesj 1079 51 progression progression NN cord-000248-zueoyesj 1079 52 in in IN cord-000248-zueoyesj 1079 53 men man NNS cord-000248-zueoyesj 1079 54 with with IN cord-000248-zueoyesj 1079 55 lymph lymph NN cord-000248-zueoyesj 1079 56 node node NN cord-000248-zueoyesj 1079 57 metastases metastasis NNS cord-000248-zueoyesj 1079 58 following follow VBG cord-000248-zueoyesj 1079 59 radical radical JJ cord-000248-zueoyesj 1079 60 prostatectomy prostatectomy NN cord-000248-zueoyesj 1079 61 : : : cord-000248-zueoyesj 1079 62 results result NNS cord-000248-zueoyesj 1079 63 of of IN cord-000248-zueoyesj 1079 64 long long JJ cord-000248-zueoyesj 1079 65 - - HYPH cord-000248-zueoyesj 1079 66 term term NN cord-000248-zueoyesj 1079 67 followup followup JJ cord-000248-zueoyesj 1079 68 Natural natural JJ cord-000248-zueoyesj 1079 69 history history NN cord-000248-zueoyesj 1079 70 of of IN cord-000248-zueoyesj 1079 71 disease disease NN cord-000248-zueoyesj 1079 72 progression progression NN cord-000248-zueoyesj 1079 73 in in IN cord-000248-zueoyesj 1079 74 patients patient NNS cord-000248-zueoyesj 1079 75 who who WP cord-000248-zueoyesj 1079 76 fail fail VBP cord-000248-zueoyesj 1079 77 to to TO cord-000248-zueoyesj 1079 78 achieve achieve VB cord-000248-zueoyesj 1079 79 an an DT cord-000248-zueoyesj 1079 80 undetectable undetectable JJ cord-000248-zueoyesj 1079 81 prostate prostate NN cord-000248-zueoyesj 1079 82 - - HYPH cord-000248-zueoyesj 1079 83 specific specific JJ cord-000248-zueoyesj 1079 84 antigen antigen NN cord-000248-zueoyesj 1079 85 level level NN cord-000248-zueoyesj 1079 86 after after IN cord-000248-zueoyesj 1079 87 undergoing undergo VBG cord-000248-zueoyesj 1079 88 radical radical JJ cord-000248-zueoyesj 1079 89 prostatectomy prostatectomy NN cord-000248-zueoyesj 1080 1 The the DT cord-000248-zueoyesj 1080 2 value value NN cord-000248-zueoyesj 1080 3 of of IN cord-000248-zueoyesj 1080 4 prostate prostate NN cord-000248-zueoyesj 1080 5 - - HYPH cord-000248-zueoyesj 1080 6 specific specific JJ cord-000248-zueoyesj 1080 7 antigen antigen NN cord-000248-zueoyesj 1080 8 levels level NNS cord-000248-zueoyesj 1080 9 in in IN cord-000248-zueoyesj 1080 10 pelvic pelvic JJ cord-000248-zueoyesj 1080 11 lymph lymph NN cord-000248-zueoyesj 1080 12 nodes node NNS cord-000248-zueoyesj 1080 13 for for IN cord-000248-zueoyesj 1080 14 diagnosing diagnose VBG cord-000248-zueoyesj 1080 15 metastatic metastatic JJ cord-000248-zueoyesj 1080 16 spread spread NN cord-000248-zueoyesj 1080 17 of of IN cord-000248-zueoyesj 1080 18 prostate prostate NN cord-000248-zueoyesj 1080 19 cancer cancer NN cord-000248-zueoyesj 1080 20 Pelvic Pelvic NNP cord-000248-zueoyesj 1080 21 lymphadenectomy lymphadenectomy NN cord-000248-zueoyesj 1080 22 can can MD cord-000248-zueoyesj 1080 23 be be VB cord-000248-zueoyesj 1080 24 omitted omit VBN cord-000248-zueoyesj 1080 25 in in IN cord-000248-zueoyesj 1080 26 selected select VBN cord-000248-zueoyesj 1080 27 patients patient NNS cord-000248-zueoyesj 1080 28 with with IN cord-000248-zueoyesj 1080 29 carcinoma carcinoma NN cord-000248-zueoyesj 1080 30 of of IN cord-000248-zueoyesj 1080 31 the the DT cord-000248-zueoyesj 1080 32 prostate prostate NN cord-000248-zueoyesj 1080 33 : : : cord-000248-zueoyesj 1080 34 development development NN cord-000248-zueoyesj 1080 35 of of IN cord-000248-zueoyesj 1080 36 a a DT cord-000248-zueoyesj 1080 37 system system NN cord-000248-zueoyesj 1080 38 of of IN cord-000248-zueoyesj 1080 39 patient patient NN cord-000248-zueoyesj 1080 40 selection selection NN cord-000248-zueoyesj 1081 1 The the DT cord-000248-zueoyesj 1081 2 gene gene NN cord-000248-zueoyesj 1081 3 expression expression NN cord-000248-zueoyesj 1081 4 signatures signature NNS cord-000248-zueoyesj 1081 5 of of IN cord-000248-zueoyesj 1081 6 melanoma melanoma NN cord-000248-zueoyesj 1081 7 progression progression NN cord-000248-zueoyesj 1082 1 The the DT cord-000248-zueoyesj 1082 2 p53 p53 NN cord-000248-zueoyesj 1082 3 family family NN cord-000248-zueoyesj 1082 4 : : : cord-000248-zueoyesj 1082 5 same same JJ cord-000248-zueoyesj 1082 6 response response NN cord-000248-zueoyesj 1082 7 , , , cord-000248-zueoyesj 1082 8 different different JJ cord-000248-zueoyesj 1082 9 signals signal NNS cord-000248-zueoyesj 1082 10 P53 P53 NNP cord-000248-zueoyesj 1082 11 family family NN cord-000248-zueoyesj 1082 12 activities activity NNS cord-000248-zueoyesj 1082 13 in in IN cord-000248-zueoyesj 1082 14 development development NN cord-000248-zueoyesj 1082 15 and and CC cord-000248-zueoyesj 1082 16 cancer cancer NN cord-000248-zueoyesj 1082 17 : : : cord-000248-zueoyesj 1083 1 relationship relationship NN cord-000248-zueoyesj 1083 2 to to IN cord-000248-zueoyesj 1083 3 melanocyte melanocyte NN cord-000248-zueoyesj 1083 4 and and CC cord-000248-zueoyesj 1083 5 keratinocyte keratinocyte NNP cord-000248-zueoyesj 1083 6 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1083 7 Contribution Contribution NNP cord-000248-zueoyesj 1083 8 of of IN cord-000248-zueoyesj 1083 9 p53 p53 NN cord-000248-zueoyesj 1083 10 , , , cord-000248-zueoyesj 1083 11 p63 p63 CD cord-000248-zueoyesj 1083 12 , , , cord-000248-zueoyesj 1083 13 and and CC cord-000248-zueoyesj 1083 14 p73 p73 NN cord-000248-zueoyesj 1083 15 to to IN cord-000248-zueoyesj 1083 16 the the DT cord-000248-zueoyesj 1083 17 developmental developmental JJ cord-000248-zueoyesj 1083 18 diseases disease NNS cord-000248-zueoyesj 1083 19 and and CC cord-000248-zueoyesj 1083 20 cancer cancer NN cord-000248-zueoyesj 1083 21 and and CC cord-000248-zueoyesj 1083 22 p63 p63 NN cord-000248-zueoyesj 1083 23 : : : cord-000248-zueoyesj 1083 24 why why WRB cord-000248-zueoyesj 1083 25 do do VBP cord-000248-zueoyesj 1083 26 we -PRON- PRP cord-000248-zueoyesj 1083 27 still still RB cord-000248-zueoyesj 1083 28 need need VB cord-000248-zueoyesj 1083 29 them -PRON- PRP cord-000248-zueoyesj 1083 30 ? ? . cord-000248-zueoyesj 1084 1 TP63 TP63 NNP cord-000248-zueoyesj 1084 2 gene gene NN cord-000248-zueoyesj 1084 3 in in IN cord-000248-zueoyesj 1084 4 stress stress NN cord-000248-zueoyesj 1084 5 response response NN cord-000248-zueoyesj 1084 6 and and CC cord-000248-zueoyesj 1084 7 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1084 8 : : : cord-000248-zueoyesj 1084 9 a a DT cord-000248-zueoyesj 1084 10 broader broad JJR cord-000248-zueoyesj 1084 11 role role NN cord-000248-zueoyesj 1084 12 than than IN cord-000248-zueoyesj 1084 13 expected expect VBN cord-000248-zueoyesj 1084 14 Properties property NNS cord-000248-zueoyesj 1084 15 of of IN cord-000248-zueoyesj 1084 16 the the DT cord-000248-zueoyesj 1084 17 six six CD cord-000248-zueoyesj 1084 18 isoforms isoform NNS cord-000248-zueoyesj 1084 19 of of IN cord-000248-zueoyesj 1084 20 p63 p63 CD cord-000248-zueoyesj 1084 21 : : : cord-000248-zueoyesj 1084 22 p53-like p53-like IN cord-000248-zueoyesj 1084 23 regulation regulation NN cord-000248-zueoyesj 1084 24 in in IN cord-000248-zueoyesj 1084 25 response response NN cord-000248-zueoyesj 1084 26 to to IN cord-000248-zueoyesj 1084 27 genotoxic genotoxic JJ cord-000248-zueoyesj 1084 28 stress stress NN cord-000248-zueoyesj 1084 29 and and CC cord-000248-zueoyesj 1084 30 cross cross NN cord-000248-zueoyesj 1084 31 talk talk NN cord-000248-zueoyesj 1084 32 with with IN cord-000248-zueoyesj 1084 33 DeltaNp73 DeltaNp73 NNP cord-000248-zueoyesj 1084 34 ) ) -RRB- cord-000248-zueoyesj 1085 1 miR-203 miR-203 NNP cord-000248-zueoyesj 1085 2 represses repress VBZ cord-000248-zueoyesj 1085 3 ' ' `` cord-000248-zueoyesj 1085 4 stemness stemness NN cord-000248-zueoyesj 1085 5 ' ' '' cord-000248-zueoyesj 1085 6 by by IN cord-000248-zueoyesj 1085 7 repressing repress VBG cord-000248-zueoyesj 1085 8 DeltaNp63 deltanp63 JJ cord-000248-zueoyesj 1085 9 Melanocyte Melanocyte NNP cord-000248-zueoyesj 1085 10 and and CC cord-000248-zueoyesj 1085 11 keratinocyte keratinocyte NNP cord-000248-zueoyesj 1085 12 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1085 13 : : : cord-000248-zueoyesj 1086 1 p53 p53 NN cord-000248-zueoyesj 1086 2 family family NN cord-000248-zueoyesj 1086 3 protein protein NN cord-000248-zueoyesj 1086 4 activities activity NNS cord-000248-zueoyesj 1086 5 and and CC cord-000248-zueoyesj 1086 6 intersecting intersect VBG cord-000248-zueoyesj 1086 7 mRNA mrna NN cord-000248-zueoyesj 1086 8 expression expression NN cord-000248-zueoyesj 1086 9 profiles profile NNS cord-000248-zueoyesj 1087 1 Comparative comparative JJ cord-000248-zueoyesj 1087 2 study study NN cord-000248-zueoyesj 1087 3 of of IN cord-000248-zueoyesj 1087 4 p63 p63 CD cord-000248-zueoyesj 1087 5 and and CC cord-000248-zueoyesj 1087 6 p53 p53 NN cord-000248-zueoyesj 1087 7 expression expression NN cord-000248-zueoyesj 1087 8 in in IN cord-000248-zueoyesj 1087 9 tissue tissue NN cord-000248-zueoyesj 1087 10 microarrays microarray NNS cord-000248-zueoyesj 1087 11 of of IN cord-000248-zueoyesj 1087 12 malignant malignant JJ cord-000248-zueoyesj 1087 13 melanomas melanoma NNS cord-000248-zueoyesj 1087 14 Connecting connect VBG cord-000248-zueoyesj 1087 15 p63 p63 CD cord-000248-zueoyesj 1087 16 to to IN cord-000248-zueoyesj 1087 17 cellular cellular JJ cord-000248-zueoyesj 1087 18 proliferation proliferation NN cord-000248-zueoyesj 1087 19 : : : cord-000248-zueoyesj 1088 1 the the DT cord-000248-zueoyesj 1088 2 example example NN cord-000248-zueoyesj 1088 3 of of IN cord-000248-zueoyesj 1088 4 the the DT cord-000248-zueoyesj 1088 5 adenosine adenosine NN cord-000248-zueoyesj 1088 6 deaminase deaminase NNP cord-000248-zueoyesj 1088 7 target target NN cord-000248-zueoyesj 1088 8 gene gene NN cord-000248-zueoyesj 1088 9 Adenosine adenosine NN cord-000248-zueoyesj 1088 10 deamination deamination NN cord-000248-zueoyesj 1088 11 sustains sustain VBZ cord-000248-zueoyesj 1088 12 dendritic dendritic JJ cord-000248-zueoyesj 1088 13 cell cell NN cord-000248-zueoyesj 1088 14 activation activation NN cord-000248-zueoyesj 1088 15 in in IN cord-000248-zueoyesj 1088 16 inflammation inflammation NN cord-000248-zueoyesj 1088 17 CK2-site ck2-site NN cord-000248-zueoyesj 1088 18 phosphorylation phosphorylation NN cord-000248-zueoyesj 1088 19 of of IN cord-000248-zueoyesj 1088 20 p53 p53 NN cord-000248-zueoyesj 1088 21 is be VBZ cord-000248-zueoyesj 1088 22 induced induce VBN cord-000248-zueoyesj 1088 23 in in IN cord-000248-zueoyesj 1088 24 DeltaNp63 DeltaNp63 NNP cord-000248-zueoyesj 1088 25 expressing express VBG cord-000248-zueoyesj 1088 26 basal basal NN cord-000248-zueoyesj 1088 27 stem stem NN cord-000248-zueoyesj 1088 28 cells cell NNS cord-000248-zueoyesj 1088 29 in in IN cord-000248-zueoyesj 1088 30 UVB uvb NN cord-000248-zueoyesj 1088 31 irradiated irradiate VBD cord-000248-zueoyesj 1088 32 human human JJ cord-000248-zueoyesj 1088 33 skin skin NN cord-000248-zueoyesj 1088 34 Adenosine adenosine NN cord-000248-zueoyesj 1088 35 deaminase deaminase NN cord-000248-zueoyesj 1088 36 activity activity NN cord-000248-zueoyesj 1088 37 in in IN cord-000248-zueoyesj 1088 38 the the DT cord-000248-zueoyesj 1088 39 serum serum NN cord-000248-zueoyesj 1088 40 and and CC cord-000248-zueoyesj 1088 41 malignant malignant JJ cord-000248-zueoyesj 1088 42 tumors tumor NNS cord-000248-zueoyesj 1088 43 of of IN cord-000248-zueoyesj 1088 44 breast breast NN cord-000248-zueoyesj 1088 45 cancer cancer NN cord-000248-zueoyesj 1088 46 : : : cord-000248-zueoyesj 1088 47 the the DT cord-000248-zueoyesj 1088 48 assessment assessment NN cord-000248-zueoyesj 1088 49 of of IN cord-000248-zueoyesj 1088 50 isoenzyme isoenzyme NNPS cord-000248-zueoyesj 1088 51 ADA1 ADA1 NNP cord-000248-zueoyesj 1088 52 and and CC cord-000248-zueoyesj 1088 53 ADA2 ADA2 NNP cord-000248-zueoyesj 1088 54 activities activity NNS cord-000248-zueoyesj 1088 55 Adenosine Adenosine NNP cord-000248-zueoyesj 1088 56 deaminase deaminase NN cord-000248-zueoyesj 1088 57 , , , cord-000248-zueoyesj 1088 58 xanthine xanthine NN cord-000248-zueoyesj 1088 59 oxidase oxidase NN cord-000248-zueoyesj 1088 60 , , , cord-000248-zueoyesj 1088 61 superoxide superoxide NN cord-000248-zueoyesj 1088 62 dismutase dismutase NN cord-000248-zueoyesj 1088 63 , , , cord-000248-zueoyesj 1088 64 glutathione glutathione NN cord-000248-zueoyesj 1088 65 peroxidase peroxidase NN cord-000248-zueoyesj 1088 66 activities activity NNS cord-000248-zueoyesj 1088 67 and and CC cord-000248-zueoyesj 1088 68 malondialdehyde malondialdehyde JJ cord-000248-zueoyesj 1088 69 levels level NNS cord-000248-zueoyesj 1088 70 in in IN cord-000248-zueoyesj 1088 71 the the DT cord-000248-zueoyesj 1088 72 sera sera NNP cord-000248-zueoyesj 1088 73 of of IN cord-000248-zueoyesj 1088 74 patients patient NNS cord-000248-zueoyesj 1088 75 with with IN cord-000248-zueoyesj 1088 76 head head NN cord-000248-zueoyesj 1088 77 and and CC cord-000248-zueoyesj 1088 78 neck neck NN cord-000248-zueoyesj 1088 79 carcinoma carcinoma NN cord-000248-zueoyesj 1088 80 Activities activity NNS cord-000248-zueoyesj 1088 81 of of IN cord-000248-zueoyesj 1088 82 adenosine adenosine NN cord-000248-zueoyesj 1088 83 deaminase deaminase NN cord-000248-zueoyesj 1088 84 and and CC cord-000248-zueoyesj 1088 85 59-nucleotidase 59-nucleotidase CD cord-000248-zueoyesj 1088 86 in in IN cord-000248-zueoyesj 1088 87 cancerous cancerous JJ cord-000248-zueoyesj 1088 88 and and CC cord-000248-zueoyesj 1088 89 noncancerous noncancerous JJ cord-000248-zueoyesj 1088 90 human human JJ cord-000248-zueoyesj 1088 91 colorectal colorectal NN cord-000248-zueoyesj 1088 92 tissues tissue NNS cord-000248-zueoyesj 1089 1 Serum serum NN cord-000248-zueoyesj 1089 2 adenosine adenosine NN cord-000248-zueoyesj 1089 3 deaminase deaminase NN cord-000248-zueoyesj 1089 4 and and CC cord-000248-zueoyesj 1089 5 arylsulphatase arylsulphatase NNP cord-000248-zueoyesj 1089 6 A A NNP cord-000248-zueoyesj 1089 7 as as IN cord-000248-zueoyesj 1089 8 an an DT cord-000248-zueoyesj 1089 9 index index NN cord-000248-zueoyesj 1089 10 of of IN cord-000248-zueoyesj 1089 11 early early JJ cord-000248-zueoyesj 1089 12 infiltration infiltration NN cord-000248-zueoyesj 1089 13 of of IN cord-000248-zueoyesj 1089 14 central central JJ cord-000248-zueoyesj 1089 15 nervous nervous JJ cord-000248-zueoyesj 1089 16 system system NN cord-000248-zueoyesj 1089 17 in in IN cord-000248-zueoyesj 1089 18 acute acute JJ cord-000248-zueoyesj 1089 19 lymphoblastic lymphoblastic NN cord-000248-zueoyesj 1090 1 leukemia leukemia NN cord-000248-zueoyesj 1090 2 Serum Serum NNP cord-000248-zueoyesj 1090 3 adenosine adenosine NN cord-000248-zueoyesj 1090 4 deaminase deaminase NN cord-000248-zueoyesj 1090 5 and and CC cord-000248-zueoyesj 1090 6 total total JJ cord-000248-zueoyesj 1090 7 superoxide superoxide NN cord-000248-zueoyesj 1090 8 dismutase dismutase NN cord-000248-zueoyesj 1090 9 activities activity NNS cord-000248-zueoyesj 1090 10 before before IN cord-000248-zueoyesj 1090 11 and and CC cord-000248-zueoyesj 1090 12 after after IN cord-000248-zueoyesj 1090 13 surgical surgical JJ cord-000248-zueoyesj 1090 14 removal removal NN cord-000248-zueoyesj 1090 15 of of IN cord-000248-zueoyesj 1090 16 cancerous cancerous JJ cord-000248-zueoyesj 1090 17 laryngeal laryngeal NN cord-000248-zueoyesj 1090 18 tissue tissue NN cord-000248-zueoyesj 1090 19 Dipeptide Dipeptide NNP cord-000248-zueoyesj 1090 20 proline proline NN cord-000248-zueoyesj 1090 21 diphenyl diphenyl FW cord-000248-zueoyesj 1090 22 phosphonates phosphonate NNS cord-000248-zueoyesj 1090 23 are be VBP cord-000248-zueoyesj 1090 24 potent potent JJ cord-000248-zueoyesj 1090 25 , , , cord-000248-zueoyesj 1090 26 irreversible irreversible JJ cord-000248-zueoyesj 1090 27 inhibitors inhibitor NNS cord-000248-zueoyesj 1090 28 of of IN cord-000248-zueoyesj 1090 29 seprase seprase NNP cord-000248-zueoyesj 1090 30 ( ( -LRB- cord-000248-zueoyesj 1090 31 FAPalpha FAPalpha NNP cord-000248-zueoyesj 1090 32 ) ) -RRB- cord-000248-zueoyesj 1091 1 Dipeptidyl dipeptidyl JJ cord-000248-zueoyesj 1091 2 peptidase peptidase NN cord-000248-zueoyesj 1091 3 inhibits inhibit VBZ cord-000248-zueoyesj 1091 4 malignant malignant JJ cord-000248-zueoyesj 1091 5 phenotype phenotype NN cord-000248-zueoyesj 1091 6 of of IN cord-000248-zueoyesj 1091 7 prostate prostate NN cord-000248-zueoyesj 1091 8 cancer cancer NN cord-000248-zueoyesj 1091 9 cells cell NNS cord-000248-zueoyesj 1091 10 by by IN cord-000248-zueoyesj 1091 11 blocking block VBG cord-000248-zueoyesj 1091 12 basic basic JJ cord-000248-zueoyesj 1091 13 fibroblast fibroblast NN cord-000248-zueoyesj 1091 14 growth growth NN cord-000248-zueoyesj 1091 15 factor factor NN cord-000248-zueoyesj 1091 16 signaling signal VBG cord-000248-zueoyesj 1092 1 pathway pathway NNP cord-000248-zueoyesj 1092 2 Loss Loss NNP cord-000248-zueoyesj 1092 3 of of IN cord-000248-zueoyesj 1092 4 dipeptidyl dipeptidyl JJ cord-000248-zueoyesj 1092 5 peptidase peptidase NN cord-000248-zueoyesj 1092 6 IV IV NNP cord-000248-zueoyesj 1092 7 immunostaining immunostaining NN cord-000248-zueoyesj 1092 8 discriminates discriminate VBZ cord-000248-zueoyesj 1092 9 malignant malignant JJ cord-000248-zueoyesj 1092 10 melanomas melanoma NNS cord-000248-zueoyesj 1092 11 from from IN cord-000248-zueoyesj 1092 12 deep deep JJ cord-000248-zueoyesj 1092 13 penetrating penetrate VBG cord-000248-zueoyesj 1092 14 nevi nevus NNS cord-000248-zueoyesj 1092 15 A a DT cord-000248-zueoyesj 1092 16 marker marker NN cord-000248-zueoyesj 1092 17 for for IN cord-000248-zueoyesj 1092 18 neoplastic neoplastic JJ cord-000248-zueoyesj 1092 19 progression progression NN cord-000248-zueoyesj 1092 20 of of IN cord-000248-zueoyesj 1092 21 human human JJ cord-000248-zueoyesj 1092 22 melanocytes melanocyte NNS cord-000248-zueoyesj 1092 23 is be VBZ cord-000248-zueoyesj 1092 24 a a DT cord-000248-zueoyesj 1092 25 cell cell NN cord-000248-zueoyesj 1092 26 surface surface NN cord-000248-zueoyesj 1092 27 ectopeptidase ectopeptidase NNP cord-000248-zueoyesj 1092 28 Expression Expression NNP cord-000248-zueoyesj 1092 29 of of IN cord-000248-zueoyesj 1092 30 CD26 CD26 NNP cord-000248-zueoyesj 1092 31 / / SYM cord-000248-zueoyesj 1092 32 dipeptidyl dipeptidyl JJ cord-000248-zueoyesj 1092 33 - - HYPH cord-000248-zueoyesj 1092 34 peptidase peptidase NN cord-000248-zueoyesj 1092 35 IV IV NNP cord-000248-zueoyesj 1092 36 in in IN cord-000248-zueoyesj 1092 37 benign benign JJ cord-000248-zueoyesj 1092 38 and and CC cord-000248-zueoyesj 1092 39 malignant malignant JJ cord-000248-zueoyesj 1092 40 pigment pigment NN cord-000248-zueoyesj 1092 41 - - HYPH cord-000248-zueoyesj 1092 42 cell cell NN cord-000248-zueoyesj 1092 43 lesions lesion NNS cord-000248-zueoyesj 1092 44 of of IN cord-000248-zueoyesj 1092 45 the the DT cord-000248-zueoyesj 1092 46 skin skin NN cord-000248-zueoyesj 1092 47 Adenosine adenosine NN cord-000248-zueoyesj 1092 48 downregulates downregulate VBZ cord-000248-zueoyesj 1092 49 DPPIV DPPIV NNP cord-000248-zueoyesj 1092 50 on on IN cord-000248-zueoyesj 1092 51 HT-29 HT-29 NNP cord-000248-zueoyesj 1092 52 colon colon NN cord-000248-zueoyesj 1092 53 cancer cancer NN cord-000248-zueoyesj 1092 54 cells cell NNS cord-000248-zueoyesj 1092 55 by by IN cord-000248-zueoyesj 1092 56 stimulating stimulate VBG cord-000248-zueoyesj 1092 57 protein protein NN cord-000248-zueoyesj 1092 58 tyrosine tyrosine NN cord-000248-zueoyesj 1092 59 phosphatases phosphatase NNS cord-000248-zueoyesj 1092 60 and and CC cord-000248-zueoyesj 1092 61 reducing reduce VBG cord-000248-zueoyesj 1092 62 ERK1/2 ERK1/2 NNP cord-000248-zueoyesj 1092 63 activity activity NN cord-000248-zueoyesj 1092 64 via via IN cord-000248-zueoyesj 1092 65 a a DT cord-000248-zueoyesj 1092 66 novel novel JJ cord-000248-zueoyesj 1092 67 pathway pathway NN cord-000248-zueoyesj 1092 68 Adenosine adenosine NN cord-000248-zueoyesj 1092 69 down down RB cord-000248-zueoyesj 1092 70 - - : cord-000248-zueoyesj 1092 71 regulates regulate VBZ cord-000248-zueoyesj 1092 72 the the DT cord-000248-zueoyesj 1092 73 surface surface NN cord-000248-zueoyesj 1092 74 expression expression NN cord-000248-zueoyesj 1092 75 of of IN cord-000248-zueoyesj 1092 76 dipeptidyl dipeptidyl JJ cord-000248-zueoyesj 1092 77 peptidase peptidase NN cord-000248-zueoyesj 1092 78 IV IV NNP cord-000248-zueoyesj 1092 79 on on IN cord-000248-zueoyesj 1092 80 HT-29 HT-29 NNP cord-000248-zueoyesj 1092 81 human human JJ cord-000248-zueoyesj 1092 82 colorectal colorectal JJ cord-000248-zueoyesj 1092 83 carcinoma carcinoma NN cord-000248-zueoyesj 1092 84 cells cell NNS cord-000248-zueoyesj 1092 85 : : : cord-000248-zueoyesj 1092 86 implications implication NNS cord-000248-zueoyesj 1092 87 for for IN cord-000248-zueoyesj 1092 88 cancer cancer NN cord-000248-zueoyesj 1092 89 cell cell NN cord-000248-zueoyesj 1092 90 behavior behavior NN cord-000248-zueoyesj 1092 91 Differential differential JJ cord-000248-zueoyesj 1092 92 regulation regulation NN cord-000248-zueoyesj 1092 93 of of IN cord-000248-zueoyesj 1092 94 centrosome centrosome NN cord-000248-zueoyesj 1092 95 integrity integrity NN cord-000248-zueoyesj 1092 96 by by IN cord-000248-zueoyesj 1092 97 DNA dna NN cord-000248-zueoyesj 1092 98 damage damage NN cord-000248-zueoyesj 1092 99 response response NN cord-000248-zueoyesj 1092 100 proteins protein NNS cord-000248-zueoyesj 1092 101 Genomic genomic JJ cord-000248-zueoyesj 1092 102 models model NNS cord-000248-zueoyesj 1092 103 of of IN cord-000248-zueoyesj 1092 104 metastatic metastatic JJ cord-000248-zueoyesj 1092 105 cancer cancer NN cord-000248-zueoyesj 1092 106 : : : cord-000248-zueoyesj 1092 107 functional functional JJ cord-000248-zueoyesj 1092 108 analysis analysis NN cord-000248-zueoyesj 1092 109 of of IN cord-000248-zueoyesj 1092 110 death death NN cord-000248-zueoyesj 1092 111 - - HYPH cord-000248-zueoyesj 1092 112 from from IN cord-000248-zueoyesj 1092 113 - - HYPH cord-000248-zueoyesj 1092 114 cancer cancer NN cord-000248-zueoyesj 1092 115 signature signature NN cord-000248-zueoyesj 1092 116 genes gene NNS cord-000248-zueoyesj 1092 117 reveals reveal VBZ cord-000248-zueoyesj 1092 118 aneuploid aneuploid JJ cord-000248-zueoyesj 1092 119 , , , cord-000248-zueoyesj 1092 120 anoikis anoikis NN cord-000248-zueoyesj 1092 121 - - HYPH cord-000248-zueoyesj 1092 122 resistant resistant JJ cord-000248-zueoyesj 1092 123 , , , cord-000248-zueoyesj 1092 124 metastasis metastasis NN cord-000248-zueoyesj 1092 125 - - HYPH cord-000248-zueoyesj 1092 126 enabling enable VBG cord-000248-zueoyesj 1092 127 phenotype phenotype NN cord-000248-zueoyesj 1092 128 with with IN cord-000248-zueoyesj 1092 129 altered altered JJ cord-000248-zueoyesj 1092 130 cell cell NN cord-000248-zueoyesj 1092 131 cycle cycle NN cord-000248-zueoyesj 1092 132 control control NN cord-000248-zueoyesj 1092 133 and and CC cord-000248-zueoyesj 1092 134 activated activate VBN cord-000248-zueoyesj 1092 135 Polycomb Polycomb NNP cord-000248-zueoyesj 1092 136 Group Group NNP cord-000248-zueoyesj 1092 137 ( ( -LRB- cord-000248-zueoyesj 1092 138 PcG PcG NNP cord-000248-zueoyesj 1092 139 ) ) -RRB- cord-000248-zueoyesj 1092 140 protein protein NN cord-000248-zueoyesj 1092 141 chromatin chromatin NN cord-000248-zueoyesj 1092 142 silencing silence VBG cord-000248-zueoyesj 1092 143 pathway pathway NN cord-000248-zueoyesj 1092 144 Expression expression NN cord-000248-zueoyesj 1092 145 patterns pattern NNS cord-000248-zueoyesj 1092 146 of of IN cord-000248-zueoyesj 1092 147 polo polo NN cord-000248-zueoyesj 1092 148 - - HYPH cord-000248-zueoyesj 1092 149 like like JJ cord-000248-zueoyesj 1092 150 kinase kinase NN cord-000248-zueoyesj 1092 151 1 1 CD cord-000248-zueoyesj 1092 152 in in IN cord-000248-zueoyesj 1092 153 human human JJ cord-000248-zueoyesj 1092 154 gastric gastric JJ cord-000248-zueoyesj 1092 155 cancer cancer NN cord-000248-zueoyesj 1092 156 Overexpression Overexpression NNP cord-000248-zueoyesj 1092 157 of of IN cord-000248-zueoyesj 1092 158 polo polo NN cord-000248-zueoyesj 1092 159 - - HYPH cord-000248-zueoyesj 1092 160 like like JJ cord-000248-zueoyesj 1092 161 kinase kinase NN cord-000248-zueoyesj 1092 162 1 1 CD cord-000248-zueoyesj 1093 1 ( ( -LRB- cord-000248-zueoyesj 1093 2 PLK1 PLK1 NNP cord-000248-zueoyesj 1093 3 ) ) -RRB- cord-000248-zueoyesj 1093 4 and and CC cord-000248-zueoyesj 1093 5 chromosomal chromosomal JJ cord-000248-zueoyesj 1093 6 instability instability NN cord-000248-zueoyesj 1093 7 in in IN cord-000248-zueoyesj 1093 8 bladder bladder NN cord-000248-zueoyesj 1093 9 cancer cancer NN cord-000248-zueoyesj 1093 10 Polo Polo NNP cord-000248-zueoyesj 1093 11 - - HYPH cord-000248-zueoyesj 1093 12 like like JJ cord-000248-zueoyesj 1093 13 kinase kinase NN cord-000248-zueoyesj 1093 14 1 1 CD cord-000248-zueoyesj 1093 15 expression expression NN cord-000248-zueoyesj 1093 16 is be VBZ cord-000248-zueoyesj 1093 17 a a DT cord-000248-zueoyesj 1093 18 prognostic prognostic JJ cord-000248-zueoyesj 1093 19 factor factor NN cord-000248-zueoyesj 1093 20 in in IN cord-000248-zueoyesj 1093 21 human human JJ cord-000248-zueoyesj 1093 22 colon colon NN cord-000248-zueoyesj 1093 23 cancer cancer NN cord-000248-zueoyesj 1093 24 Polo Polo NNP cord-000248-zueoyesj 1093 25 - - HYPH cord-000248-zueoyesj 1093 26 like like JJ cord-000248-zueoyesj 1093 27 kinase kinase NN cord-000248-zueoyesj 1093 28 1 1 CD cord-000248-zueoyesj 1093 29 ( ( -LRB- cord-000248-zueoyesj 1093 30 PLK1 PLK1 NNP cord-000248-zueoyesj 1093 31 ) ) -RRB- cord-000248-zueoyesj 1093 32 is be VBZ cord-000248-zueoyesj 1093 33 overexpressed overexpresse VBN cord-000248-zueoyesj 1093 34 in in IN cord-000248-zueoyesj 1093 35 primary primary JJ cord-000248-zueoyesj 1093 36 colorectal colorectal JJ cord-000248-zueoyesj 1093 37 cancers cancer NNS cord-000248-zueoyesj 1094 1 Aberrant aberrant JJ cord-000248-zueoyesj 1094 2 Polo Polo NNP cord-000248-zueoyesj 1094 3 - - HYPH cord-000248-zueoyesj 1094 4 like like JJ cord-000248-zueoyesj 1094 5 kinase kinase NN cord-000248-zueoyesj 1094 6 1-Cdc25A 1-cdc25a CD cord-000248-zueoyesj 1094 7 pathway pathway NN cord-000248-zueoyesj 1094 8 in in IN cord-000248-zueoyesj 1094 9 metastatic metastatic JJ cord-000248-zueoyesj 1094 10 hepatocellular hepatocellular JJ cord-000248-zueoyesj 1094 11 carcinoma carcinoma NN cord-000248-zueoyesj 1094 12 Polo polo NN cord-000248-zueoyesj 1094 13 - - HYPH cord-000248-zueoyesj 1094 14 like like JJ cord-000248-zueoyesj 1094 15 kinase kinase NN cord-000248-zueoyesj 1094 16 1 1 CD cord-000248-zueoyesj 1094 17 expression expression NN cord-000248-zueoyesj 1094 18 in in IN cord-000248-zueoyesj 1094 19 medullary medullary JJ cord-000248-zueoyesj 1094 20 carcinoma carcinoma NN cord-000248-zueoyesj 1094 21 of of IN cord-000248-zueoyesj 1094 22 the the DT cord-000248-zueoyesj 1094 23 thyroid thyroid NN cord-000248-zueoyesj 1094 24 : : : cord-000248-zueoyesj 1095 1 its -PRON- PRP$ cord-000248-zueoyesj 1095 2 relationship relationship NN cord-000248-zueoyesj 1095 3 with with IN cord-000248-zueoyesj 1095 4 clinicopathological clinicopathological NNP cord-000248-zueoyesj 1095 5 features feature VBZ cord-000248-zueoyesj 1095 6 Silencing silencing NN cord-000248-zueoyesj 1095 7 of of IN cord-000248-zueoyesj 1095 8 polo polo NN cord-000248-zueoyesj 1095 9 - - HYPH cord-000248-zueoyesj 1095 10 like like JJ cord-000248-zueoyesj 1095 11 kinase kinase NN cord-000248-zueoyesj 1095 12 ( ( -LRB- cord-000248-zueoyesj 1095 13 Plk Plk NNP cord-000248-zueoyesj 1095 14 ) ) -RRB- cord-000248-zueoyesj 1095 15 1 1 CD cord-000248-zueoyesj 1095 16 via via IN cord-000248-zueoyesj 1095 17 siRNA siRNA NNP cord-000248-zueoyesj 1095 18 causes cause VBZ cord-000248-zueoyesj 1095 19 inhibition inhibition NN cord-000248-zueoyesj 1095 20 of of IN cord-000248-zueoyesj 1095 21 growth growth NN cord-000248-zueoyesj 1095 22 and and CC cord-000248-zueoyesj 1095 23 induction induction NN cord-000248-zueoyesj 1095 24 of of IN cord-000248-zueoyesj 1095 25 apoptosis apoptosis NN cord-000248-zueoyesj 1095 26 in in IN cord-000248-zueoyesj 1095 27 human human JJ cord-000248-zueoyesj 1095 28 esophageal esophageal JJ cord-000248-zueoyesj 1095 29 cancer cancer NN cord-000248-zueoyesj 1095 30 cells cell NNS cord-000248-zueoyesj 1095 31 Identification identification NN cord-000248-zueoyesj 1095 32 of of IN cord-000248-zueoyesj 1095 33 human human JJ cord-000248-zueoyesj 1095 34 polo polo NN cord-000248-zueoyesj 1095 35 - - HYPH cord-000248-zueoyesj 1095 36 like like JJ cord-000248-zueoyesj 1095 37 kinase kinase NN cord-000248-zueoyesj 1095 38 1 1 CD cord-000248-zueoyesj 1095 39 as as IN cord-000248-zueoyesj 1095 40 a a DT cord-000248-zueoyesj 1095 41 potential potential JJ cord-000248-zueoyesj 1095 42 therapeutic therapeutic JJ cord-000248-zueoyesj 1095 43 target target NN cord-000248-zueoyesj 1095 44 in in IN cord-000248-zueoyesj 1095 45 pancreatic pancreatic JJ cord-000248-zueoyesj 1095 46 cancer cancer NN cord-000248-zueoyesj 1095 47 Robust robust JJ cord-000248-zueoyesj 1095 48 diagnosis diagnosis NN cord-000248-zueoyesj 1095 49 of of IN cord-000248-zueoyesj 1095 50 non non JJ cord-000248-zueoyesj 1095 51 - - JJ cord-000248-zueoyesj 1095 52 Hodgkin Hodgkin NNP cord-000248-zueoyesj 1095 53 lymphoma lymphoma NN cord-000248-zueoyesj 1095 54 phenotypes phenotype NNS cord-000248-zueoyesj 1095 55 validated validate VBN cord-000248-zueoyesj 1095 56 on on IN cord-000248-zueoyesj 1095 57 gene gene NN cord-000248-zueoyesj 1095 58 expression expression NN cord-000248-zueoyesj 1095 59 data datum NNS cord-000248-zueoyesj 1095 60 from from IN cord-000248-zueoyesj 1095 61 different different JJ cord-000248-zueoyesj 1095 62 laboratories laboratory NNS cord-000248-zueoyesj 1095 63 Polo Polo NNP cord-000248-zueoyesj 1095 64 - - HYPH cord-000248-zueoyesj 1095 65 like like JJ cord-000248-zueoyesj 1095 66 kinase kinase NN cord-000248-zueoyesj 1095 67 isoforms isoform NNS cord-000248-zueoyesj 1095 68 in in IN cord-000248-zueoyesj 1095 69 breast breast NN cord-000248-zueoyesj 1095 70 cancer cancer NN cord-000248-zueoyesj 1095 71 : : : cord-000248-zueoyesj 1095 72 expression expression NN cord-000248-zueoyesj 1095 73 patterns pattern NNS cord-000248-zueoyesj 1095 74 and and CC cord-000248-zueoyesj 1095 75 prognostic prognostic JJ cord-000248-zueoyesj 1095 76 implications implication NNS cord-000248-zueoyesj 1095 77 Expression expression NN cord-000248-zueoyesj 1095 78 of of IN cord-000248-zueoyesj 1095 79 polo polo NN cord-000248-zueoyesj 1095 80 - - HYPH cord-000248-zueoyesj 1095 81 like like JJ cord-000248-zueoyesj 1095 82 kinase kinase NN cord-000248-zueoyesj 1095 83 ( ( -LRB- cord-000248-zueoyesj 1095 84 PLK1 PLK1 NNP cord-000248-zueoyesj 1095 85 ) ) -RRB- cord-000248-zueoyesj 1096 1 in in IN cord-000248-zueoyesj 1096 2 thin thin JJ cord-000248-zueoyesj 1096 3 melanomas melanoma NNS cord-000248-zueoyesj 1096 4 : : : cord-000248-zueoyesj 1096 5 a a DT cord-000248-zueoyesj 1096 6 novel novel JJ cord-000248-zueoyesj 1096 7 marker marker NN cord-000248-zueoyesj 1096 8 of of IN cord-000248-zueoyesj 1096 9 metastatic metastatic JJ cord-000248-zueoyesj 1096 10 disease disease NN cord-000248-zueoyesj 1096 11 Biodistribution Biodistribution NNP cord-000248-zueoyesj 1096 12 and and CC cord-000248-zueoyesj 1096 13 kinetics kinetic NNS cord-000248-zueoyesj 1096 14 of of IN cord-000248-zueoyesj 1096 15 the the DT cord-000248-zueoyesj 1096 16 novel novel JJ cord-000248-zueoyesj 1096 17 selective selective JJ cord-000248-zueoyesj 1096 18 oncolytic oncolytic JJ cord-000248-zueoyesj 1096 19 adenovirus adenovirus NN cord-000248-zueoyesj 1096 20 M1 M1 NNP cord-000248-zueoyesj 1096 21 after after IN cord-000248-zueoyesj 1096 22 systemic systemic JJ cord-000248-zueoyesj 1096 23 administration administration NN cord-000248-zueoyesj 1096 24 Confirming confirm VBG cord-000248-zueoyesj 1096 25 the the DT cord-000248-zueoyesj 1096 26 RNAi RNAi NNS cord-000248-zueoyesj 1096 27 - - HYPH cord-000248-zueoyesj 1096 28 mediated mediate VBN cord-000248-zueoyesj 1096 29 mechanism mechanism NN cord-000248-zueoyesj 1096 30 of of IN cord-000248-zueoyesj 1096 31 action action NN cord-000248-zueoyesj 1096 32 of of IN cord-000248-zueoyesj 1096 33 siRNA siRNA NNP cord-000248-zueoyesj 1096 34 - - HYPH cord-000248-zueoyesj 1096 35 based base VBN cord-000248-zueoyesj 1096 36 cancer cancer NN cord-000248-zueoyesj 1096 37 therapeutics therapeutic NNS cord-000248-zueoyesj 1096 38 in in IN cord-000248-zueoyesj 1096 39 mice mouse NNS cord-000248-zueoyesj 1096 40 Normal normal JJ cord-000248-zueoyesj 1096 41 cells cell NNS cord-000248-zueoyesj 1096 42 , , , cord-000248-zueoyesj 1096 43 but but CC cord-000248-zueoyesj 1096 44 not not RB cord-000248-zueoyesj 1096 45 cancer cancer NN cord-000248-zueoyesj 1096 46 cells cell NNS cord-000248-zueoyesj 1096 47 , , , cord-000248-zueoyesj 1096 48 survive survive VBP cord-000248-zueoyesj 1096 49 severe severe JJ cord-000248-zueoyesj 1096 50 Plk1 plk1 JJ cord-000248-zueoyesj 1096 51 depletion depletion NN cord-000248-zueoyesj 1096 52 Polo polo NN cord-000248-zueoyesj 1096 53 - - HYPH cord-000248-zueoyesj 1096 54 like like JJ cord-000248-zueoyesj 1096 55 kinase kinase NN cord-000248-zueoyesj 1096 56 ( ( -LRB- cord-000248-zueoyesj 1096 57 Plk)1 Plk)1 NNS cord-000248-zueoyesj 1096 58 depletion depletion NN cord-000248-zueoyesj 1096 59 induces induce VBZ cord-000248-zueoyesj 1096 60 apoptosis apoptosis NN cord-000248-zueoyesj 1096 61 in in IN cord-000248-zueoyesj 1096 62 cancer cancer NN cord-000248-zueoyesj 1096 63 cells cell NNS cord-000248-zueoyesj 1096 64 Effect effect NN cord-000248-zueoyesj 1096 65 of of IN cord-000248-zueoyesj 1096 66 antisense antisense NNP cord-000248-zueoyesj 1096 67 RNA RNA NNP cord-000248-zueoyesj 1096 68 targeting target VBG cord-000248-zueoyesj 1096 69 Polo Polo NNP cord-000248-zueoyesj 1096 70 - - HYPH cord-000248-zueoyesj 1096 71 like like JJ cord-000248-zueoyesj 1096 72 kinase kinase NN cord-000248-zueoyesj 1096 73 1 1 CD cord-000248-zueoyesj 1096 74 on on IN cord-000248-zueoyesj 1096 75 cell cell NN cord-000248-zueoyesj 1096 76 growth growth NN cord-000248-zueoyesj 1096 77 in in IN cord-000248-zueoyesj 1096 78 A549 a549 JJ cord-000248-zueoyesj 1096 79 lung lung NN cord-000248-zueoyesj 1096 80 cancer cancer NN cord-000248-zueoyesj 1096 81 cells cell NNS cord-000248-zueoyesj 1097 1 A a DT cord-000248-zueoyesj 1097 2 panel panel NN cord-000248-zueoyesj 1097 3 of of IN cord-000248-zueoyesj 1097 4 isogenic isogenic JJ cord-000248-zueoyesj 1097 5 human human JJ cord-000248-zueoyesj 1097 6 cancer cancer NN cord-000248-zueoyesj 1097 7 cells cell NNS cord-000248-zueoyesj 1097 8 suggests suggest VBZ cord-000248-zueoyesj 1097 9 a a DT cord-000248-zueoyesj 1097 10 therapeutic therapeutic JJ cord-000248-zueoyesj 1097 11 approach approach NN cord-000248-zueoyesj 1097 12 for for IN cord-000248-zueoyesj 1097 13 cancers cancer NNS cord-000248-zueoyesj 1097 14 with with IN cord-000248-zueoyesj 1097 15 inactivated inactivate VBN cord-000248-zueoyesj 1097 16 p53 p53 NN cord-000248-zueoyesj 1097 17 Plk1 Plk1 NNP cord-000248-zueoyesj 1097 18 depletion depletion NN cord-000248-zueoyesj 1097 19 in in IN cord-000248-zueoyesj 1097 20 nontransformed nontransforme VBN cord-000248-zueoyesj 1097 21 diploid diploid JJ cord-000248-zueoyesj 1097 22 cells cell NNS cord-000248-zueoyesj 1097 23 activates activate VBZ cord-000248-zueoyesj 1097 24 the the DT cord-000248-zueoyesj 1097 25 DNA dna NN cord-000248-zueoyesj 1097 26 - - HYPH cord-000248-zueoyesj 1097 27 damage damage NN cord-000248-zueoyesj 1097 28 checkpoint checkpoint NN cord-000248-zueoyesj 1097 29 GATHER gather VB cord-000248-zueoyesj 1097 30 : : : cord-000248-zueoyesj 1097 31 a a DT cord-000248-zueoyesj 1097 32 systems system NNS cord-000248-zueoyesj 1097 33 approach approach NN cord-000248-zueoyesj 1097 34 to to IN cord-000248-zueoyesj 1097 35 interpreting interpret VBG cord-000248-zueoyesj 1097 36 genomic genomic JJ cord-000248-zueoyesj 1097 37 signatures signature NNS cord-000248-zueoyesj 1097 38 Profiler profiler NN cord-000248-zueoyesj 1097 39 - - , cord-000248-zueoyesj 1097 40 a a DT cord-000248-zueoyesj 1097 41 webbased webbased JJ cord-000248-zueoyesj 1097 42 toolset toolset NN cord-000248-zueoyesj 1097 43 for for IN cord-000248-zueoyesj 1097 44 functional functional JJ cord-000248-zueoyesj 1097 45 profiling profiling NN cord-000248-zueoyesj 1097 46 of of IN cord-000248-zueoyesj 1097 47 gene gene NN cord-000248-zueoyesj 1097 48 lists list NNS cord-000248-zueoyesj 1097 49 from from IN cord-000248-zueoyesj 1097 50 large large JJ cord-000248-zueoyesj 1097 51 - - HYPH cord-000248-zueoyesj 1097 52 scale scale NN cord-000248-zueoyesj 1097 53 experiments experiment NNS cord-000248-zueoyesj 1097 54 Cryptic cryptic JJ cord-000248-zueoyesj 1097 55 splicing splicing NN cord-000248-zueoyesj 1097 56 at at IN cord-000248-zueoyesj 1097 57 a a DT cord-000248-zueoyesj 1097 58 non non JJ cord-000248-zueoyesj 1097 59 - - JJ cord-000248-zueoyesj 1097 60 consensus consensus JJ cord-000248-zueoyesj 1097 61 splice splice NN cord-000248-zueoyesj 1097 62 - - HYPH cord-000248-zueoyesj 1097 63 donor donor NN cord-000248-zueoyesj 1097 64 in in IN cord-000248-zueoyesj 1097 65 a a DT cord-000248-zueoyesj 1097 66 patient patient NN cord-000248-zueoyesj 1097 67 with with IN cord-000248-zueoyesj 1097 68 a a DT cord-000248-zueoyesj 1097 69 novel novel JJ cord-000248-zueoyesj 1097 70 mutation mutation NN cord-000248-zueoyesj 1097 71 in in IN cord-000248-zueoyesj 1097 72 the the DT cord-000248-zueoyesj 1097 73 plakophilin-1 plakophilin-1 NNP cord-000248-zueoyesj 1097 74 gene gene NN cord-000248-zueoyesj 1097 75 Genetic genetic JJ cord-000248-zueoyesj 1097 76 diseases disease NNS cord-000248-zueoyesj 1097 77 of of IN cord-000248-zueoyesj 1097 78 junctions junction NNS cord-000248-zueoyesj 1098 1 Ectodermal Ectodermal NNP cord-000248-zueoyesj 1098 2 dysplasia dysplasia NN cord-000248-zueoyesj 1098 3 - - HYPH cord-000248-zueoyesj 1098 4 skin skin NN cord-000248-zueoyesj 1098 5 fragility fragility NN cord-000248-zueoyesj 1098 6 syndrome syndrome NN cord-000248-zueoyesj 1098 7 resulting result VBG cord-000248-zueoyesj 1098 8 from from IN cord-000248-zueoyesj 1098 9 a a DT cord-000248-zueoyesj 1098 10 new new JJ cord-000248-zueoyesj 1098 11 homozygous homozygous JJ cord-000248-zueoyesj 1098 12 mutation mutation NN cord-000248-zueoyesj 1098 13 , , , cord-000248-zueoyesj 1098 14 888delC 888delc CD cord-000248-zueoyesj 1098 15 , , , cord-000248-zueoyesj 1098 16 in in IN cord-000248-zueoyesj 1098 17 the the DT cord-000248-zueoyesj 1098 18 desmosomal desmosomal JJ cord-000248-zueoyesj 1098 19 protein protein NN cord-000248-zueoyesj 1098 20 plakophilin plakophilin NNP cord-000248-zueoyesj 1098 21 1 1 CD cord-000248-zueoyesj 1098 22 Clinical clinical JJ cord-000248-zueoyesj 1098 23 and and CC cord-000248-zueoyesj 1098 24 molecular molecular JJ cord-000248-zueoyesj 1098 25 significance significance NN cord-000248-zueoyesj 1098 26 of of IN cord-000248-zueoyesj 1098 27 splice splice NN cord-000248-zueoyesj 1098 28 site site NN cord-000248-zueoyesj 1098 29 mutations mutation NNS cord-000248-zueoyesj 1098 30 in in IN cord-000248-zueoyesj 1098 31 the the DT cord-000248-zueoyesj 1098 32 plakophilin plakophilin NNP cord-000248-zueoyesj 1098 33 1 1 CD cord-000248-zueoyesj 1098 34 gene gene NN cord-000248-zueoyesj 1098 35 in in IN cord-000248-zueoyesj 1098 36 patients patient NNS cord-000248-zueoyesj 1098 37 with with IN cord-000248-zueoyesj 1098 38 ectodermal ectodermal NNP cord-000248-zueoyesj 1098 39 dysplasiaskin dysplasiaskin NNP cord-000248-zueoyesj 1098 40 fragility fragility NN cord-000248-zueoyesj 1098 41 syndrome syndrome NN cord-000248-zueoyesj 1099 1 Inherited inherit VBN cord-000248-zueoyesj 1099 2 disorders disorder NNS cord-000248-zueoyesj 1099 3 of of IN cord-000248-zueoyesj 1099 4 desmosomes desmosome NNS cord-000248-zueoyesj 1100 1 Hereditary hereditary JJ cord-000248-zueoyesj 1100 2 mucoepithelial mucoepithelial JJ cord-000248-zueoyesj 1100 3 dysplasia dysplasia NN cord-000248-zueoyesj 1100 4 : : : cord-000248-zueoyesj 1101 1 clinical clinical JJ cord-000248-zueoyesj 1101 2 , , , cord-000248-zueoyesj 1101 3 ultrastructural ultrastructural JJ cord-000248-zueoyesj 1101 4 and and CC cord-000248-zueoyesj 1101 5 genetic genetic JJ cord-000248-zueoyesj 1101 6 study study NN cord-000248-zueoyesj 1101 7 of of IN cord-000248-zueoyesj 1101 8 eight eight CD cord-000248-zueoyesj 1101 9 patients patient NNS cord-000248-zueoyesj 1101 10 and and CC cord-000248-zueoyesj 1101 11 literature literature NN cord-000248-zueoyesj 1101 12 review review NN cord-000248-zueoyesj 1101 13 Homozygous Homozygous NNP cord-000248-zueoyesj 1101 14 splice splice NN cord-000248-zueoyesj 1101 15 site site NN cord-000248-zueoyesj 1101 16 mutations mutation NNS cord-000248-zueoyesj 1101 17 in in IN cord-000248-zueoyesj 1101 18 PKP1 PKP1 NNP cord-000248-zueoyesj 1101 19 result result NN cord-000248-zueoyesj 1101 20 in in IN cord-000248-zueoyesj 1101 21 loss loss NN cord-000248-zueoyesj 1101 22 of of IN cord-000248-zueoyesj 1101 23 epidermal epidermal JJ cord-000248-zueoyesj 1101 24 plakophilin plakophilin NN cord-000248-zueoyesj 1101 25 1 1 CD cord-000248-zueoyesj 1101 26 expression expression NN cord-000248-zueoyesj 1101 27 and and CC cord-000248-zueoyesj 1101 28 underlie underlie VBP cord-000248-zueoyesj 1101 29 ectodermal ectodermal JJ cord-000248-zueoyesj 1101 30 dysplasia dysplasia NN cord-000248-zueoyesj 1101 31 / / SYM cord-000248-zueoyesj 1101 32 skin skin NN cord-000248-zueoyesj 1101 33 fragility fragility NN cord-000248-zueoyesj 1101 34 syndrome syndrome NN cord-000248-zueoyesj 1101 35 in in IN cord-000248-zueoyesj 1101 36 two two CD cord-000248-zueoyesj 1101 37 consanguineous consanguineous JJ cord-000248-zueoyesj 1101 38 families family NNS cord-000248-zueoyesj 1101 39 Assessment Assessment NNP cord-000248-zueoyesj 1101 40 of of IN cord-000248-zueoyesj 1101 41 splice splice NN cord-000248-zueoyesj 1101 42 variant variant NN cord-000248-zueoyesj 1101 43 - - HYPH cord-000248-zueoyesj 1101 44 specific specific JJ cord-000248-zueoyesj 1101 45 functions function NNS cord-000248-zueoyesj 1101 46 of of IN cord-000248-zueoyesj 1101 47 desmocollin desmocollin NN cord-000248-zueoyesj 1101 48 1 1 CD cord-000248-zueoyesj 1101 49 in in IN cord-000248-zueoyesj 1101 50 the the DT cord-000248-zueoyesj 1101 51 skin skin NN cord-000248-zueoyesj 1101 52 Desmosomes desmosome NNS cord-000248-zueoyesj 1101 53 : : : cord-000248-zueoyesj 1101 54 structure structure NN cord-000248-zueoyesj 1101 55 and and CC cord-000248-zueoyesj 1101 56 function function NN cord-000248-zueoyesj 1101 57 in in IN cord-000248-zueoyesj 1101 58 normal normal JJ cord-000248-zueoyesj 1101 59 and and CC cord-000248-zueoyesj 1101 60 diseased diseased JJ cord-000248-zueoyesj 1101 61 epidermis epidermis NN cord-000248-zueoyesj 1101 62 Genomic genomic JJ cord-000248-zueoyesj 1101 63 amplification amplification NN cord-000248-zueoyesj 1101 64 of of IN cord-000248-zueoyesj 1101 65 the the DT cord-000248-zueoyesj 1101 66 human human JJ cord-000248-zueoyesj 1101 67 plakophilin plakophilin NNP cord-000248-zueoyesj 1101 68 1 1 CD cord-000248-zueoyesj 1101 69 gene gene NN cord-000248-zueoyesj 1101 70 and and CC cord-000248-zueoyesj 1101 71 detection detection NN cord-000248-zueoyesj 1101 72 of of IN cord-000248-zueoyesj 1101 73 a a DT cord-000248-zueoyesj 1101 74 new new JJ cord-000248-zueoyesj 1101 75 mutation mutation NN cord-000248-zueoyesj 1101 76 in in IN cord-000248-zueoyesj 1101 77 ectodermal ectodermal JJ cord-000248-zueoyesj 1101 78 dysplasia dysplasia NN cord-000248-zueoyesj 1101 79 / / SYM cord-000248-zueoyesj 1101 80 skin skin NN cord-000248-zueoyesj 1101 81 fragility fragility NN cord-000248-zueoyesj 1101 82 syndrome syndrome NN cord-000248-zueoyesj 1101 83 Genomic Genomic NNP cord-000248-zueoyesj 1101 84 organization organization NN cord-000248-zueoyesj 1101 85 and and CC cord-000248-zueoyesj 1101 86 amplification amplification NN cord-000248-zueoyesj 1101 87 of of IN cord-000248-zueoyesj 1101 88 the the DT cord-000248-zueoyesj 1101 89 human human JJ cord-000248-zueoyesj 1101 90 plakoglobin plakoglobin NNP cord-000248-zueoyesj 1101 91 gene gene NN cord-000248-zueoyesj 1101 92 ( ( -LRB- cord-000248-zueoyesj 1101 93 JUP JUP NNP cord-000248-zueoyesj 1101 94 ) ) -RRB- cord-000248-zueoyesj 1101 95 Skin skin NN cord-000248-zueoyesj 1101 96 fragility fragility NN cord-000248-zueoyesj 1101 97 and and CC cord-000248-zueoyesj 1101 98 hypohidrotic hypohidrotic JJ cord-000248-zueoyesj 1101 99 ectodermal ectodermal NN cord-000248-zueoyesj 1101 100 dysplasia dysplasia NN cord-000248-zueoyesj 1101 101 resulting result VBG cord-000248-zueoyesj 1101 102 from from IN cord-000248-zueoyesj 1101 103 ablation ablation NN cord-000248-zueoyesj 1101 104 of of IN cord-000248-zueoyesj 1101 105 plakophilin plakophilin NN cord-000248-zueoyesj 1101 106 1 1 CD cord-000248-zueoyesj 1101 107 Hereditary hereditary JJ cord-000248-zueoyesj 1101 108 diseases disease NNS cord-000248-zueoyesj 1101 109 of of IN cord-000248-zueoyesj 1101 110 desmosomes desmosome NNS cord-000248-zueoyesj 1101 111 A a DT cord-000248-zueoyesj 1101 112 novel novel JJ cord-000248-zueoyesj 1101 113 genodermatosis genodermatosis NN cord-000248-zueoyesj 1101 114 caused cause VBN cord-000248-zueoyesj 1101 115 by by IN cord-000248-zueoyesj 1101 116 mutations mutation NNS cord-000248-zueoyesj 1101 117 in in IN cord-000248-zueoyesj 1101 118 plakophilin plakophilin NNP cord-000248-zueoyesj 1101 119 1 1 CD cord-000248-zueoyesj 1101 120 , , , cord-000248-zueoyesj 1102 1 a a DT cord-000248-zueoyesj 1102 2 structural structural JJ cord-000248-zueoyesj 1102 3 component component NN cord-000248-zueoyesj 1102 4 of of IN cord-000248-zueoyesj 1102 5 desmosomes desmosome NNS cord-000248-zueoyesj 1102 6 Decreased decrease VBD cord-000248-zueoyesj 1102 7 plakophilin-1 plakophilin-1 IN cord-000248-zueoyesj 1102 8 expression expression NN cord-000248-zueoyesj 1102 9 promotes promote VBZ cord-000248-zueoyesj 1102 10 increased increase VBN cord-000248-zueoyesj 1102 11 motility motility NN cord-000248-zueoyesj 1102 12 in in IN cord-000248-zueoyesj 1102 13 head head NN cord-000248-zueoyesj 1102 14 and and CC cord-000248-zueoyesj 1102 15 neck neck NN cord-000248-zueoyesj 1102 16 squamous squamous JJ cord-000248-zueoyesj 1102 17 cell cell NN cord-000248-zueoyesj 1102 18 carcinoma carcinoma NN cord-000248-zueoyesj 1102 19 cells cell NNS cord-000248-zueoyesj 1103 1 The the DT cord-000248-zueoyesj 1103 2 distribution distribution NN cord-000248-zueoyesj 1103 3 of of IN cord-000248-zueoyesj 1103 4 the the DT cord-000248-zueoyesj 1103 5 desmosomal desmosomal NNP cord-000248-zueoyesj 1103 6 protein protein NN cord-000248-zueoyesj 1103 7 , , , cord-000248-zueoyesj 1103 8 plakophilin plakophilin NNP cord-000248-zueoyesj 1103 9 1 1 CD cord-000248-zueoyesj 1103 10 , , , cord-000248-zueoyesj 1103 11 in in IN cord-000248-zueoyesj 1103 12 human human JJ cord-000248-zueoyesj 1103 13 skin skin NN cord-000248-zueoyesj 1103 14 and and CC cord-000248-zueoyesj 1103 15 skin skin NN cord-000248-zueoyesj 1104 1 tumors tumor NNS cord-000248-zueoyesj 1104 2 Plakoglobin Plakoglobin NNP cord-000248-zueoyesj 1104 3 is be VBZ cord-000248-zueoyesj 1104 4 required require VBN cord-000248-zueoyesj 1104 5 for for IN cord-000248-zueoyesj 1104 6 effective effective JJ cord-000248-zueoyesj 1104 7 intermediate intermediate JJ cord-000248-zueoyesj 1104 8 filament filament NN cord-000248-zueoyesj 1104 9 anchorage anchorage NNP cord-000248-zueoyesj 1104 10 to to IN cord-000248-zueoyesj 1104 11 desmosomes desmosomes NNP cord-000248-zueoyesj 1104 12 Plakophilins Plakophilins NNP cord-000248-zueoyesj 1104 13 - - HYPH cord-000248-zueoyesj 1104 14 hard hard JJ cord-000248-zueoyesj 1104 15 work work NN cord-000248-zueoyesj 1104 16 in in IN cord-000248-zueoyesj 1104 17 the the DT cord-000248-zueoyesj 1104 18 desmosome desmosome NN cord-000248-zueoyesj 1104 19 , , , cord-000248-zueoyesj 1104 20 recreation recreation NN cord-000248-zueoyesj 1104 21 in in IN cord-000248-zueoyesj 1104 22 the the DT cord-000248-zueoyesj 1104 23 nucleus nucleus NN cord-000248-zueoyesj 1104 24 ? ? . cord-000248-zueoyesj 1105 1 The the DT cord-000248-zueoyesj 1105 2 function function NN cord-000248-zueoyesj 1105 3 of of IN cord-000248-zueoyesj 1105 4 plakophilin plakophilin NNP cord-000248-zueoyesj 1105 5 1 1 CD cord-000248-zueoyesj 1105 6 in in IN cord-000248-zueoyesj 1105 7 desmosome desmosome NNP cord-000248-zueoyesj 1105 8 assembly assembly NN cord-000248-zueoyesj 1105 9 and and CC cord-000248-zueoyesj 1105 10 actin actin NNP cord-000248-zueoyesj 1105 11 filament filament NN cord-000248-zueoyesj 1105 12 organization organization NN cord-000248-zueoyesj 1106 1 Plakophilins plakophilin NNS cord-000248-zueoyesj 1106 2 : : : cord-000248-zueoyesj 1107 1 Multifunctional multifunctional JJ cord-000248-zueoyesj 1107 2 proteins protein NNS cord-000248-zueoyesj 1107 3 or or CC cord-000248-zueoyesj 1107 4 just just RB cord-000248-zueoyesj 1107 5 regulators regulator NNS cord-000248-zueoyesj 1107 6 of of IN cord-000248-zueoyesj 1107 7 desmosomal desmosomal JJ cord-000248-zueoyesj 1107 8 adhesion adhesion NN cord-000248-zueoyesj 1107 9 ? ? . cord-000248-zueoyesj 1108 1 Comparative comparative JJ cord-000248-zueoyesj 1108 2 analysis analysis NN cord-000248-zueoyesj 1108 3 of of IN cord-000248-zueoyesj 1108 4 armadillo armadillo NN cord-000248-zueoyesj 1108 5 family family NN cord-000248-zueoyesj 1108 6 proteins protein VBZ cord-000248-zueoyesj 1108 7 in in IN cord-000248-zueoyesj 1108 8 the the DT cord-000248-zueoyesj 1108 9 regulation regulation NN cord-000248-zueoyesj 1108 10 of of IN cord-000248-zueoyesj 1108 11 a431 a431 NNP cord-000248-zueoyesj 1108 12 epithelial epithelial JJ cord-000248-zueoyesj 1108 13 cell cell NN cord-000248-zueoyesj 1108 14 junction junction NN cord-000248-zueoyesj 1108 15 assembly assembly NN cord-000248-zueoyesj 1108 16 , , , cord-000248-zueoyesj 1108 17 adhesion adhesion NN cord-000248-zueoyesj 1108 18 and and CC cord-000248-zueoyesj 1108 19 migration migration NN cord-000248-zueoyesj 1108 20 Desmoplakin Desmoplakin NNP cord-000248-zueoyesj 1108 21 assembly assembly NN cord-000248-zueoyesj 1108 22 dynamics dynamic NNS cord-000248-zueoyesj 1108 23 in in IN cord-000248-zueoyesj 1108 24 four four CD cord-000248-zueoyesj 1108 25 dimensions dimension NNS cord-000248-zueoyesj 1108 26 : : : cord-000248-zueoyesj 1109 1 multiple multiple JJ cord-000248-zueoyesj 1109 2 phases phase NNS cord-000248-zueoyesj 1109 3 differentially differentially RB cord-000248-zueoyesj 1109 4 regulated regulate VBN cord-000248-zueoyesj 1109 5 by by IN cord-000248-zueoyesj 1109 6 intermediate intermediate JJ cord-000248-zueoyesj 1109 7 filaments filament NNS cord-000248-zueoyesj 1109 8 and and CC cord-000248-zueoyesj 1109 9 actin actin VBG cord-000248-zueoyesj 1109 10 A a DT cord-000248-zueoyesj 1109 11 role role NN cord-000248-zueoyesj 1109 12 for for IN cord-000248-zueoyesj 1109 13 plakophilin-1 plakophilin-1 NNP cord-000248-zueoyesj 1109 14 in in IN cord-000248-zueoyesj 1109 15 the the DT cord-000248-zueoyesj 1109 16 initiation initiation NN cord-000248-zueoyesj 1109 17 of of IN cord-000248-zueoyesj 1109 18 desmosome desmosome NNP cord-000248-zueoyesj 1109 19 assembly assembly NNP cord-000248-zueoyesj 1109 20 Lack Lack NNP cord-000248-zueoyesj 1109 21 of of IN cord-000248-zueoyesj 1109 22 plakophilin plakophilin NNP cord-000248-zueoyesj 1109 23 1 1 CD cord-000248-zueoyesj 1109 24 increases increase NNS cord-000248-zueoyesj 1109 25 keratinocyte keratinocyte NNP cord-000248-zueoyesj 1109 26 migration migration NN cord-000248-zueoyesj 1109 27 and and CC cord-000248-zueoyesj 1109 28 reduces reduce VBZ cord-000248-zueoyesj 1109 29 desmosome desmosome NN cord-000248-zueoyesj 1109 30 stability stability NN cord-000248-zueoyesj 1110 1 The the DT cord-000248-zueoyesj 1110 2 desmoglein desmoglein NN cord-000248-zueoyesj 1110 3 - - HYPH cord-000248-zueoyesj 1110 4 specific specific JJ cord-000248-zueoyesj 1110 5 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 1110 6 region region NN cord-000248-zueoyesj 1110 7 is be VBZ cord-000248-zueoyesj 1110 8 intrinsically intrinsically RB cord-000248-zueoyesj 1110 9 disordered disordered JJ cord-000248-zueoyesj 1110 10 in in IN cord-000248-zueoyesj 1110 11 solution solution NN cord-000248-zueoyesj 1110 12 and and CC cord-000248-zueoyesj 1110 13 interacts interact VBZ cord-000248-zueoyesj 1110 14 with with IN cord-000248-zueoyesj 1110 15 multiple multiple JJ cord-000248-zueoyesj 1110 16 desmosomal desmosomal JJ cord-000248-zueoyesj 1110 17 protein protein NN cord-000248-zueoyesj 1110 18 partners partner NNS cord-000248-zueoyesj 1111 1 The the DT cord-000248-zueoyesj 1111 2 fate fate NN cord-000248-zueoyesj 1111 3 of of IN cord-000248-zueoyesj 1111 4 desmosomal desmosomal JJ cord-000248-zueoyesj 1111 5 proteins protein NNS cord-000248-zueoyesj 1111 6 in in IN cord-000248-zueoyesj 1111 7 apoptotic apoptotic JJ cord-000248-zueoyesj 1111 8 cells cell NNS cord-000248-zueoyesj 1111 9 Aquaporin Aquaporin NNP cord-000248-zueoyesj 1111 10 water water NN cord-000248-zueoyesj 1111 11 channels channel NNS cord-000248-zueoyesj 1111 12 in in IN cord-000248-zueoyesj 1111 13 mammals mammal NNS cord-000248-zueoyesj 1111 14 Skin skin VBP cord-000248-zueoyesj 1111 15 aquaporins aquaporin NNS cord-000248-zueoyesj 1111 16 : : : cord-000248-zueoyesj 1111 17 function function VB cord-000248-zueoyesj 1111 18 in in IN cord-000248-zueoyesj 1111 19 hydration hydration NN cord-000248-zueoyesj 1111 20 , , , cord-000248-zueoyesj 1111 21 wound wind VBN cord-000248-zueoyesj 1111 22 healing healing NN cord-000248-zueoyesj 1111 23 , , , cord-000248-zueoyesj 1111 24 and and CC cord-000248-zueoyesj 1111 25 skin skin NN cord-000248-zueoyesj 1111 26 epidermis epidermis NN cord-000248-zueoyesj 1111 27 homeostasis homeostasis NN cord-000248-zueoyesj 1111 28 Roles role NNS cord-000248-zueoyesj 1111 29 of of IN cord-000248-zueoyesj 1111 30 aquaporin-3 aquaporin-3 NNP cord-000248-zueoyesj 1111 31 water water NN cord-000248-zueoyesj 1111 32 channels channel NNS cord-000248-zueoyesj 1111 33 in in IN cord-000248-zueoyesj 1111 34 volume volume NN cord-000248-zueoyesj 1111 35 - - HYPH cord-000248-zueoyesj 1111 36 regulatory regulatory JJ cord-000248-zueoyesj 1111 37 water water NN cord-000248-zueoyesj 1111 38 flow flow NN cord-000248-zueoyesj 1111 39 in in IN cord-000248-zueoyesj 1111 40 a a DT cord-000248-zueoyesj 1111 41 human human JJ cord-000248-zueoyesj 1111 42 epithelial epithelial JJ cord-000248-zueoyesj 1111 43 cell cell NN cord-000248-zueoyesj 1111 44 line line NN cord-000248-zueoyesj 1112 1 Osmotic osmotic JJ cord-000248-zueoyesj 1112 2 stress stress NN cord-000248-zueoyesj 1113 1 up up RB cord-000248-zueoyesj 1113 2 - - HYPH cord-000248-zueoyesj 1113 3 regulates regulate VBZ cord-000248-zueoyesj 1113 4 aquaporin-3 aquaporin-3 NN cord-000248-zueoyesj 1113 5 gene gene NN cord-000248-zueoyesj 1113 6 expression expression NN cord-000248-zueoyesj 1113 7 in in IN cord-000248-zueoyesj 1113 8 cultured cultured JJ cord-000248-zueoyesj 1113 9 human human JJ cord-000248-zueoyesj 1113 10 keratinocytes keratinocyte NNS cord-000248-zueoyesj 1113 11 Increased increase VBN cord-000248-zueoyesj 1113 12 expression expression NN cord-000248-zueoyesj 1113 13 of of IN cord-000248-zueoyesj 1113 14 aquaporin aquaporin NNP cord-000248-zueoyesj 1113 15 3 3 CD cord-000248-zueoyesj 1113 16 in in IN cord-000248-zueoyesj 1113 17 atopic atopic JJ cord-000248-zueoyesj 1113 18 eczema eczema NN cord-000248-zueoyesj 1113 19 Specific specific JJ cord-000248-zueoyesj 1113 20 aquaporins aquaporin NNS cord-000248-zueoyesj 1113 21 facilitate facilitate VBP cord-000248-zueoyesj 1113 22 the the DT cord-000248-zueoyesj 1113 23 diffusion diffusion NN cord-000248-zueoyesj 1113 24 of of IN cord-000248-zueoyesj 1113 25 hydrogen hydrogen NN cord-000248-zueoyesj 1113 26 peroxide peroxide NN cord-000248-zueoyesj 1113 27 across across IN cord-000248-zueoyesj 1113 28 membranes membrane NNS cord-000248-zueoyesj 1114 1 All all DT cord-000248-zueoyesj 1114 2 - - HYPH cord-000248-zueoyesj 1114 3 trans trans NNP cord-000248-zueoyesj 1114 4 retinoic retinoic JJ cord-000248-zueoyesj 1114 5 acid acid NN cord-000248-zueoyesj 1114 6 attenuates attenuate VBZ cord-000248-zueoyesj 1114 7 ultraviolet ultraviolet JJ cord-000248-zueoyesj 1114 8 radiation radiation NN cord-000248-zueoyesj 1114 9 - - HYPH cord-000248-zueoyesj 1114 10 induced induce VBN cord-000248-zueoyesj 1114 11 down down NN cord-000248-zueoyesj 1114 12 - - HYPH cord-000248-zueoyesj 1114 13 regulation regulation NN cord-000248-zueoyesj 1114 14 of of IN cord-000248-zueoyesj 1114 15 aquaporin-3 aquaporin-3 NN cord-000248-zueoyesj 1114 16 and and CC cord-000248-zueoyesj 1114 17 water water NN cord-000248-zueoyesj 1114 18 permeability permeability NN cord-000248-zueoyesj 1114 19 in in IN cord-000248-zueoyesj 1114 20 human human JJ cord-000248-zueoyesj 1114 21 keratinocytes keratinocyte NNS cord-000248-zueoyesj 1115 1 Reactive reactive JJ cord-000248-zueoyesj 1115 2 oxygen oxygen NN cord-000248-zueoyesj 1115 3 species specie NNS cord-000248-zueoyesj 1115 4 : : : cord-000248-zueoyesj 1115 5 a a DT cord-000248-zueoyesj 1115 6 breath breath NN cord-000248-zueoyesj 1115 7 of of IN cord-000248-zueoyesj 1115 8 life life NN cord-000248-zueoyesj 1115 9 or or CC cord-000248-zueoyesj 1115 10 death death NN cord-000248-zueoyesj 1115 11 ? ? . cord-000248-zueoyesj 1116 1 Role role NN cord-000248-zueoyesj 1116 2 of of IN cord-000248-zueoyesj 1116 3 claudins claudin NNS cord-000248-zueoyesj 1116 4 in in IN cord-000248-zueoyesj 1116 5 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1116 6 Changes change NNS cord-000248-zueoyesj 1116 7 in in IN cord-000248-zueoyesj 1116 8 the the DT cord-000248-zueoyesj 1116 9 distribution distribution NN cord-000248-zueoyesj 1116 10 pattern pattern NN cord-000248-zueoyesj 1116 11 of of IN cord-000248-zueoyesj 1116 12 Claudin Claudin NNP cord-000248-zueoyesj 1116 13 tight tight JJ cord-000248-zueoyesj 1116 14 junction junction NN cord-000248-zueoyesj 1116 15 proteins protein NNS cord-000248-zueoyesj 1116 16 during during IN cord-000248-zueoyesj 1116 17 the the DT cord-000248-zueoyesj 1116 18 progression progression NN cord-000248-zueoyesj 1116 19 of of IN cord-000248-zueoyesj 1116 20 mouse mouse NN cord-000248-zueoyesj 1116 21 skin skin NN cord-000248-zueoyesj 1116 22 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1116 23 Claudin-1 Claudin-1 NNP cord-000248-zueoyesj 1116 24 is be VBZ cord-000248-zueoyesj 1116 25 a a DT cord-000248-zueoyesj 1116 26 metastasis metastasis NN cord-000248-zueoyesj 1116 27 suppressor suppressor NN cord-000248-zueoyesj 1116 28 and and CC cord-000248-zueoyesj 1116 29 correlates correlate VBZ cord-000248-zueoyesj 1116 30 with with IN cord-000248-zueoyesj 1116 31 clinical clinical JJ cord-000248-zueoyesj 1116 32 outcome outcome NN cord-000248-zueoyesj 1116 33 in in IN cord-000248-zueoyesj 1116 34 lung lung NN cord-000248-zueoyesj 1116 35 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1116 36 Reexpression Reexpression NNP cord-000248-zueoyesj 1116 37 of of IN cord-000248-zueoyesj 1116 38 the the DT cord-000248-zueoyesj 1116 39 TJ TJ NNP cord-000248-zueoyesj 1116 40 protein protein NN cord-000248-zueoyesj 1116 41 CLDN1 CLDN1 NNP cord-000248-zueoyesj 1117 1 induces induce VBZ cord-000248-zueoyesj 1117 2 apoptosis apoptosis NN cord-000248-zueoyesj 1117 3 in in IN cord-000248-zueoyesj 1117 4 breast breast NN cord-000248-zueoyesj 1117 5 tumor tumor NN cord-000248-zueoyesj 1117 6 spheroids spheroid NNS cord-000248-zueoyesj 1117 7 Claudin-1 Claudin-1 NNP cord-000248-zueoyesj 1117 8 , , , cord-000248-zueoyesj 1117 9 -3 -3 NNP cord-000248-zueoyesj 1117 10 and and CC cord-000248-zueoyesj 1117 11 -4 -4 NN cord-000248-zueoyesj 1117 12 proteins protein NNS cord-000248-zueoyesj 1117 13 and and CC cord-000248-zueoyesj 1117 14 mRNA mrna NN cord-000248-zueoyesj 1117 15 expression expression NN cord-000248-zueoyesj 1117 16 in in IN cord-000248-zueoyesj 1117 17 benign benign JJ cord-000248-zueoyesj 1117 18 and and CC cord-000248-zueoyesj 1117 19 malignant malignant JJ cord-000248-zueoyesj 1117 20 breast breast NN cord-000248-zueoyesj 1117 21 lesions lesion NNS cord-000248-zueoyesj 1117 22 : : : cord-000248-zueoyesj 1118 1 a a DT cord-000248-zueoyesj 1118 2 research research NN cord-000248-zueoyesj 1118 3 study study NN cord-000248-zueoyesj 1118 4 Decreased decrease VBD cord-000248-zueoyesj 1118 5 expression expression NN cord-000248-zueoyesj 1118 6 of of IN cord-000248-zueoyesj 1118 7 claudin-1 claudin-1 NNP cord-000248-zueoyesj 1118 8 correlates correlate VBZ cord-000248-zueoyesj 1118 9 with with IN cord-000248-zueoyesj 1118 10 recurrence recurrence NN cord-000248-zueoyesj 1118 11 status status NN cord-000248-zueoyesj 1118 12 in in IN cord-000248-zueoyesj 1118 13 breast breast NN cord-000248-zueoyesj 1118 14 cancer cancer NN cord-000248-zueoyesj 1118 15 Constitutive constitutive JJ cord-000248-zueoyesj 1118 16 activation activation NN cord-000248-zueoyesj 1118 17 of of IN cord-000248-zueoyesj 1118 18 Wnt Wnt NNP cord-000248-zueoyesj 1118 19 / / SYM cord-000248-zueoyesj 1118 20 beta beta NN cord-000248-zueoyesj 1118 21 - - HYPH cord-000248-zueoyesj 1118 22 catenin catenin NN cord-000248-zueoyesj 1118 23 signaling signal VBG cord-000248-zueoyesj 1118 24 pathway pathway NN cord-000248-zueoyesj 1118 25 in in IN cord-000248-zueoyesj 1118 26 migrationactive migrationactive JJ cord-000248-zueoyesj 1118 27 melanoma melanoma NN cord-000248-zueoyesj 1118 28 cells cell NNS cord-000248-zueoyesj 1118 29 : : : cord-000248-zueoyesj 1119 1 role role NN cord-000248-zueoyesj 1119 2 of of IN cord-000248-zueoyesj 1119 3 LEF-1 LEF-1 NNP cord-000248-zueoyesj 1119 4 in in IN cord-000248-zueoyesj 1119 5 melanoma melanoma NN cord-000248-zueoyesj 1119 6 with with IN cord-000248-zueoyesj 1119 7 increased increase VBN cord-000248-zueoyesj 1119 8 metastatic metastatic JJ cord-000248-zueoyesj 1119 9 potential potential JJ cord-000248-zueoyesj 1119 10 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1119 11 expression expression NN cord-000248-zueoyesj 1119 12 and and CC cord-000248-zueoyesj 1119 13 distribution distribution NN cord-000248-zueoyesj 1119 14 in in IN cord-000248-zueoyesj 1119 15 human human JJ cord-000248-zueoyesj 1119 16 carcinomas carcinoma NNS cord-000248-zueoyesj 1119 17 Functional functional JJ cord-000248-zueoyesj 1119 18 analysis analysis NN cord-000248-zueoyesj 1119 19 of of IN cord-000248-zueoyesj 1119 20 the the DT cord-000248-zueoyesj 1119 21 osteopontin osteopontin NNP cord-000248-zueoyesj 1119 22 molecule molecule NN cord-000248-zueoyesj 1119 23 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1119 24 activation activation NN cord-000248-zueoyesj 1119 25 of of IN cord-000248-zueoyesj 1119 26 c c NNP cord-000248-zueoyesj 1119 27 - - HYPH cord-000248-zueoyesj 1119 28 src src NNP cord-000248-zueoyesj 1119 29 in in IN cord-000248-zueoyesj 1119 30 human human JJ cord-000248-zueoyesj 1119 31 melanoma melanoma NN cord-000248-zueoyesj 1119 32 cells cell NNS cord-000248-zueoyesj 1119 33 requires require VBZ cord-000248-zueoyesj 1119 34 the the DT cord-000248-zueoyesj 1119 35 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 1119 36 domain domain NN cord-000248-zueoyesj 1119 37 of of IN cord-000248-zueoyesj 1119 38 the the DT cord-000248-zueoyesj 1119 39 integrin integrin NNP cord-000248-zueoyesj 1119 40 alpha alpha NN cord-000248-zueoyesj 1119 41 v v NN cord-000248-zueoyesj 1119 42 - - HYPH cord-000248-zueoyesj 1119 43 subunit subunit NNP cord-000248-zueoyesj 1119 44 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1119 45 N n CD cord-000248-zueoyesj 1119 46 - - HYPH cord-000248-zueoyesj 1119 47 terminal terminal NN cord-000248-zueoyesj 1119 48 domain domain NN cord-000248-zueoyesj 1119 49 contains contain VBZ cord-000248-zueoyesj 1119 50 a a DT cord-000248-zueoyesj 1119 51 cryptic cryptic JJ cord-000248-zueoyesj 1119 52 adhesive adhesive NN cord-000248-zueoyesj 1119 53 sequence sequence NN cord-000248-zueoyesj 1119 54 recognized recognize VBN cord-000248-zueoyesj 1119 55 by by IN cord-000248-zueoyesj 1119 56 alpha9beta1 alpha9beta1 NNP cord-000248-zueoyesj 1119 57 integrin integrin NN cord-000248-zueoyesj 1120 1 An an DT cord-000248-zueoyesj 1120 2 examination examination NN cord-000248-zueoyesj 1120 3 of of IN cord-000248-zueoyesj 1120 4 the the DT cord-000248-zueoyesj 1120 5 effects effect NNS cord-000248-zueoyesj 1120 6 of of IN cord-000248-zueoyesj 1120 7 hypoxia hypoxia NN cord-000248-zueoyesj 1120 8 , , , cord-000248-zueoyesj 1120 9 acidosis acidosis NN cord-000248-zueoyesj 1120 10 , , , cord-000248-zueoyesj 1120 11 and and CC cord-000248-zueoyesj 1120 12 glucose glucose NN cord-000248-zueoyesj 1120 13 starvation starvation NN cord-000248-zueoyesj 1120 14 on on IN cord-000248-zueoyesj 1120 15 the the DT cord-000248-zueoyesj 1120 16 expression expression NN cord-000248-zueoyesj 1120 17 of of IN cord-000248-zueoyesj 1120 18 metastasis metastasis NN cord-000248-zueoyesj 1120 19 - - HYPH cord-000248-zueoyesj 1120 20 associated associate VBN cord-000248-zueoyesj 1120 21 genes gene NNS cord-000248-zueoyesj 1120 22 in in IN cord-000248-zueoyesj 1120 23 murine murine JJ cord-000248-zueoyesj 1120 24 tumor tumor NN cord-000248-zueoyesj 1120 25 cells cell NNS cord-000248-zueoyesj 1120 26 Structural structural JJ cord-000248-zueoyesj 1120 27 requirements requirement NNS cord-000248-zueoyesj 1120 28 for for IN cord-000248-zueoyesj 1120 29 alpha alpha NN cord-000248-zueoyesj 1120 30 9 9 CD cord-000248-zueoyesj 1120 31 beta beta NN cord-000248-zueoyesj 1120 32 1-mediated 1-mediated CD cord-000248-zueoyesj 1120 33 adhesion adhesion NN cord-000248-zueoyesj 1120 34 and and CC cord-000248-zueoyesj 1120 35 migration migration NN cord-000248-zueoyesj 1120 36 to to IN cord-000248-zueoyesj 1120 37 thrombin thrombin RB cord-000248-zueoyesj 1120 38 - - HYPH cord-000248-zueoyesj 1120 39 cleaved cleave VBN cord-000248-zueoyesj 1120 40 osteopontin osteopontin JJ cord-000248-zueoyesj 1120 41 Chimeric chimeric JJ cord-000248-zueoyesj 1120 42 peptides peptide NNS cord-000248-zueoyesj 1120 43 of of IN cord-000248-zueoyesj 1120 44 statherin statherin NNP cord-000248-zueoyesj 1120 45 and and CC cord-000248-zueoyesj 1120 46 osteopontin osteopontin NNP cord-000248-zueoyesj 1120 47 that that WDT cord-000248-zueoyesj 1120 48 bind bind VBP cord-000248-zueoyesj 1120 49 hydroxyapatite hydroxyapatite NN cord-000248-zueoyesj 1120 50 and and CC cord-000248-zueoyesj 1120 51 mediate mediate VB cord-000248-zueoyesj 1120 52 cell cell NN cord-000248-zueoyesj 1120 53 adhesion adhesion NN cord-000248-zueoyesj 1120 54 Natural natural JJ cord-000248-zueoyesj 1120 55 metabolites metabolite NNS cord-000248-zueoyesj 1120 56 of of IN cord-000248-zueoyesj 1120 57 1alpha 1alpha CD cord-000248-zueoyesj 1120 58 , , , cord-000248-zueoyesj 1120 59 25-dihydroxyvitamin 25-dihydroxyvitamin CD cord-000248-zueoyesj 1120 60 D(3 D(3 NNS cord-000248-zueoyesj 1120 61 ) ) -RRB- cord-000248-zueoyesj 1120 62 retain retain VB cord-000248-zueoyesj 1120 63 biologic biologic JJ cord-000248-zueoyesj 1120 64 activity activity NN cord-000248-zueoyesj 1120 65 mediated mediate VBN cord-000248-zueoyesj 1120 66 through through IN cord-000248-zueoyesj 1120 67 the the DT cord-000248-zueoyesj 1120 68 vitamin vitamin NN cord-000248-zueoyesj 1120 69 D D NNP cord-000248-zueoyesj 1120 70 receptor receptor NN cord-000248-zueoyesj 1120 71 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1120 72 deficiency deficiency NN cord-000248-zueoyesj 1120 73 reduces reduce VBZ cord-000248-zueoyesj 1120 74 experimental experimental JJ cord-000248-zueoyesj 1120 75 tumor tumor NN cord-000248-zueoyesj 1120 76 cell cell NN cord-000248-zueoyesj 1120 77 metastasis metastasis NN cord-000248-zueoyesj 1120 78 to to IN cord-000248-zueoyesj 1120 79 bone bone NN cord-000248-zueoyesj 1120 80 and and CC cord-000248-zueoyesj 1120 81 soft soft JJ cord-000248-zueoyesj 1120 82 tissues tissue NNS cord-000248-zueoyesj 1120 83 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1120 84 stimulates stimulate VBZ cord-000248-zueoyesj 1120 85 tumor tumor NN cord-000248-zueoyesj 1120 86 growth growth NN cord-000248-zueoyesj 1120 87 and and CC cord-000248-zueoyesj 1120 88 activation activation NN cord-000248-zueoyesj 1120 89 of of IN cord-000248-zueoyesj 1120 90 promatrix promatrix NNP cord-000248-zueoyesj 1120 91 metalloproteinase-2 metalloproteinase-2 NNP cord-000248-zueoyesj 1120 92 through through IN cord-000248-zueoyesj 1120 93 nuclear nuclear JJ cord-000248-zueoyesj 1120 94 factor factor NN cord-000248-zueoyesj 1120 95 - - HYPH cord-000248-zueoyesj 1120 96 kappa kappa NN cord-000248-zueoyesj 1120 97 B b NN cord-000248-zueoyesj 1120 98 - - HYPH cord-000248-zueoyesj 1120 99 mediated mediate VBN cord-000248-zueoyesj 1120 100 induction induction NN cord-000248-zueoyesj 1120 101 of of IN cord-000248-zueoyesj 1120 102 membrane membrane NN cord-000248-zueoyesj 1120 103 type type NN cord-000248-zueoyesj 1120 104 1 1 CD cord-000248-zueoyesj 1120 105 matrix matrix NN cord-000248-zueoyesj 1120 106 metalloproteinase metalloproteinase NN cord-000248-zueoyesj 1120 107 in in IN cord-000248-zueoyesj 1120 108 murine murine JJ cord-000248-zueoyesj 1120 109 melanoma melanoma NN cord-000248-zueoyesj 1120 110 cells cell NNS cord-000248-zueoyesj 1121 1 Autocrine Autocrine NNP cord-000248-zueoyesj 1121 2 stimulation stimulation NN cord-000248-zueoyesj 1121 3 by by IN cord-000248-zueoyesj 1121 4 osteopontin osteopontin NNP cord-000248-zueoyesj 1121 5 contributes contribute VBZ cord-000248-zueoyesj 1121 6 to to IN cord-000248-zueoyesj 1121 7 antiapoptotic antiapoptotic JJ cord-000248-zueoyesj 1121 8 signalling signalling NN cord-000248-zueoyesj 1121 9 of of IN cord-000248-zueoyesj 1121 10 melanocytes melanocyte NNS cord-000248-zueoyesj 1121 11 in in IN cord-000248-zueoyesj 1121 12 dermal dermal JJ cord-000248-zueoyesj 1121 13 collagen collagen NN cord-000248-zueoyesj 1121 14 Cooperative cooperative JJ cord-000248-zueoyesj 1121 15 role role NN cord-000248-zueoyesj 1121 16 of of IN cord-000248-zueoyesj 1121 17 osteopontin osteopontin NNP cord-000248-zueoyesj 1121 18 with with IN cord-000248-zueoyesj 1121 19 type type NN cord-000248-zueoyesj 1121 20 I -PRON- PRP cord-000248-zueoyesj 1121 21 collagen collagen NN cord-000248-zueoyesj 1121 22 on on IN cord-000248-zueoyesj 1121 23 the the DT cord-000248-zueoyesj 1121 24 metastasis metastasis NN cord-000248-zueoyesj 1121 25 of of IN cord-000248-zueoyesj 1121 26 murine murine JJ cord-000248-zueoyesj 1121 27 melanoma melanoma NN cord-000248-zueoyesj 1121 28 cells cell NNS cord-000248-zueoyesj 1122 1 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1122 2 induces induce VBZ cord-000248-zueoyesj 1122 3 nuclear nuclear JJ cord-000248-zueoyesj 1122 4 factor factor NN cord-000248-zueoyesj 1122 5 kappa kappa NN cord-000248-zueoyesj 1122 6 Bmediated Bmediated NNP cord-000248-zueoyesj 1122 7 promatrix promatrix NN cord-000248-zueoyesj 1122 8 metalloproteinase-2 metalloproteinase-2 NNP cord-000248-zueoyesj 1122 9 activation activation NN cord-000248-zueoyesj 1122 10 through through IN cord-000248-zueoyesj 1122 11 I I NNP cord-000248-zueoyesj 1122 12 kappa kappa NN cord-000248-zueoyesj 1122 13 B B NNP cord-000248-zueoyesj 1123 1 alpha/ alpha/ NN cord-000248-zueoyesj 1123 2 IKK IKK NNP cord-000248-zueoyesj 1123 3 signaling signal VBG cord-000248-zueoyesj 1123 4 pathways pathway NNS cord-000248-zueoyesj 1123 5 , , , cord-000248-zueoyesj 1123 6 and and CC cord-000248-zueoyesj 1123 7 curcumin curcumin NN cord-000248-zueoyesj 1123 8 ( ( -LRB- cord-000248-zueoyesj 1123 9 diferulolylmethane diferulolylmethane NNP cord-000248-zueoyesj 1123 10 ) ) -RRB- cord-000248-zueoyesj 1123 11 down down RB cord-000248-zueoyesj 1123 12 - - , cord-000248-zueoyesj 1123 13 regulates regulate VBZ cord-000248-zueoyesj 1123 14 these these DT cord-000248-zueoyesj 1123 15 pathways pathway NNS cord-000248-zueoyesj 1124 1 Osteopontin osteopontin NN cord-000248-zueoyesj 1124 2 - - HYPH cord-000248-zueoyesj 1124 3 deficiency deficiency NN cord-000248-zueoyesj 1124 4 suppresses suppress VBZ cord-000248-zueoyesj 1124 5 growth growth NN cord-000248-zueoyesj 1124 6 of of IN cord-000248-zueoyesj 1124 7 B16 B16 NNP cord-000248-zueoyesj 1124 8 melanoma melanoma NN cord-000248-zueoyesj 1124 9 cells cell NNS cord-000248-zueoyesj 1124 10 implanted implant VBN cord-000248-zueoyesj 1124 11 in in IN cord-000248-zueoyesj 1124 12 bone bone NN cord-000248-zueoyesj 1124 13 and and CC cord-000248-zueoyesj 1124 14 osteoclastogenesis osteoclastogenesis NN cord-000248-zueoyesj 1124 15 in in IN cord-000248-zueoyesj 1124 16 co co NNS cord-000248-zueoyesj 1124 17 - - NNS cord-000248-zueoyesj 1124 18 cultures culture NNS cord-000248-zueoyesj 1124 19 Nuclear nuclear JJ cord-000248-zueoyesj 1124 20 factor factor NN cord-000248-zueoyesj 1124 21 - - HYPH cord-000248-zueoyesj 1124 22 inducing induce VBG cord-000248-zueoyesj 1124 23 kinase kinase NN cord-000248-zueoyesj 1124 24 plays play VBZ cord-000248-zueoyesj 1124 25 a a DT cord-000248-zueoyesj 1124 26 crucial crucial JJ cord-000248-zueoyesj 1124 27 role role NN cord-000248-zueoyesj 1124 28 in in IN cord-000248-zueoyesj 1124 29 osteopontin osteopontin NN cord-000248-zueoyesj 1124 30 - - HYPH cord-000248-zueoyesj 1124 31 induced induce VBN cord-000248-zueoyesj 1124 32 MAPK MAPK NNP cord-000248-zueoyesj 1124 33 / / SYM cord-000248-zueoyesj 1124 34 IkappaBalpha IkappaBalpha NNP cord-000248-zueoyesj 1124 35 kinasedependent kinasedependent NN cord-000248-zueoyesj 1124 36 nuclear nuclear JJ cord-000248-zueoyesj 1124 37 factor factor NN cord-000248-zueoyesj 1124 38 kappaB kappaB NNP cord-000248-zueoyesj 1124 39 - - HYPH cord-000248-zueoyesj 1124 40 mediated mediate VBN cord-000248-zueoyesj 1124 41 promatrix promatrix NNP cord-000248-zueoyesj 1124 42 metalloproteinase-9 metalloproteinase-9 NNP cord-000248-zueoyesj 1124 43 activation activation NN cord-000248-zueoyesj 1124 44 Gene Gene NNP cord-000248-zueoyesj 1124 45 expression expression NN cord-000248-zueoyesj 1124 46 analysis analysis NN cord-000248-zueoyesj 1124 47 to to TO cord-000248-zueoyesj 1124 48 identify identify VB cord-000248-zueoyesj 1124 49 mRNA mrna NN cord-000248-zueoyesj 1124 50 markers marker NNS cord-000248-zueoyesj 1124 51 of of IN cord-000248-zueoyesj 1124 52 cardiac cardiac JJ cord-000248-zueoyesj 1124 53 myxoma myxoma NNP cord-000248-zueoyesj 1124 54 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1125 1 : : : cord-000248-zueoyesj 1125 2 it -PRON- PRP cord-000248-zueoyesj 1125 3 's be VBZ cord-000248-zueoyesj 1125 4 role role NN cord-000248-zueoyesj 1125 5 in in IN cord-000248-zueoyesj 1125 6 regulation regulation NN cord-000248-zueoyesj 1125 7 of of IN cord-000248-zueoyesj 1125 8 cell cell NN cord-000248-zueoyesj 1125 9 motility motility NN cord-000248-zueoyesj 1125 10 and and CC cord-000248-zueoyesj 1125 11 nuclear nuclear JJ cord-000248-zueoyesj 1125 12 factor factor NN cord-000248-zueoyesj 1125 13 kappa kappa NN cord-000248-zueoyesj 1125 14 B B NNP cord-000248-zueoyesj 1125 15 - - HYPH cord-000248-zueoyesj 1125 16 mediated mediate VBN cord-000248-zueoyesj 1125 17 urokinase urokinase NN cord-000248-zueoyesj 1125 18 type type NN cord-000248-zueoyesj 1125 19 plasminogen plasminogen NN cord-000248-zueoyesj 1125 20 activator activator NN cord-000248-zueoyesj 1125 21 expression expression NN cord-000248-zueoyesj 1126 1 Osteopontin osteopontin JJ cord-000248-zueoyesj 1126 2 expression expression NN cord-000248-zueoyesj 1126 3 correlates correlate VBZ cord-000248-zueoyesj 1126 4 with with IN cord-000248-zueoyesj 1126 5 melanoma melanoma NN cord-000248-zueoyesj 1126 6 invasion invasion NN cord-000248-zueoyesj 1126 7 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1126 8 in in IN cord-000248-zueoyesj 1126 9 melanocytic melanocytic JJ cord-000248-zueoyesj 1126 10 lesions lesion NNS cord-000248-zueoyesj 1126 11 - - : cord-000248-zueoyesj 1126 12 a a DT cord-000248-zueoyesj 1126 13 first first JJ cord-000248-zueoyesj 1126 14 step step NN cord-000248-zueoyesj 1126 15 towards towards IN cord-000248-zueoyesj 1126 16 invasion invasion NN cord-000248-zueoyesj 1126 17 ? ? . cord-000248-zueoyesj 1127 1 Osteopontin osteopontin JJ cord-000248-zueoyesj 1127 2 expression expression NN cord-000248-zueoyesj 1127 3 correlates correlate VBZ cord-000248-zueoyesj 1127 4 with with IN cord-000248-zueoyesj 1127 5 melanoma melanoma NN cord-000248-zueoyesj 1127 6 invasion invasion NN cord-000248-zueoyesj 1127 7 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1127 8 expression expression NN cord-000248-zueoyesj 1127 9 and and CC cord-000248-zueoyesj 1127 10 serum serum NN cord-000248-zueoyesj 1127 11 levels level NNS cord-000248-zueoyesj 1127 12 in in IN cord-000248-zueoyesj 1127 13 metastatic metastatic JJ cord-000248-zueoyesj 1127 14 uveal uveal JJ cord-000248-zueoyesj 1127 15 melanoma melanoma NN cord-000248-zueoyesj 1127 16 : : : cord-000248-zueoyesj 1127 17 a a DT cord-000248-zueoyesj 1127 18 pilot pilot NN cord-000248-zueoyesj 1127 19 study study NN cord-000248-zueoyesj 1127 20 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1127 21 is be VBZ cord-000248-zueoyesj 1127 22 a a DT cord-000248-zueoyesj 1127 23 downstream downstream JJ cord-000248-zueoyesj 1127 24 effector effector NN cord-000248-zueoyesj 1127 25 of of IN cord-000248-zueoyesj 1127 26 the the DT cord-000248-zueoyesj 1127 27 PI3-kinase pi3-kinase NN cord-000248-zueoyesj 1127 28 pathway pathway NN cord-000248-zueoyesj 1127 29 in in IN cord-000248-zueoyesj 1127 30 melanomas melanoma NNS cord-000248-zueoyesj 1128 1 that that DT cord-000248-zueoyesj 1128 2 is be VBZ cord-000248-zueoyesj 1128 3 inversely inversely RB cord-000248-zueoyesj 1128 4 correlated correlate VBN cord-000248-zueoyesj 1128 5 with with IN cord-000248-zueoyesj 1128 6 functional functional JJ cord-000248-zueoyesj 1128 7 PTEN PTEN NNP cord-000248-zueoyesj 1128 8 Alpha Alpha NNP cord-000248-zueoyesj 1128 9 - - HYPH cord-000248-zueoyesj 1128 10 V v NN cord-000248-zueoyesj 1128 11 - - HYPH cord-000248-zueoyesj 1128 12 dependent dependent JJ cord-000248-zueoyesj 1128 13 outside outside IN cord-000248-zueoyesj 1128 14 - - HYPH cord-000248-zueoyesj 1128 15 in in NN cord-000248-zueoyesj 1128 16 signaling signaling NN cord-000248-zueoyesj 1128 17 is be VBZ cord-000248-zueoyesj 1128 18 required require VBN cord-000248-zueoyesj 1128 19 for for IN cord-000248-zueoyesj 1128 20 the the DT cord-000248-zueoyesj 1128 21 regulation regulation NN cord-000248-zueoyesj 1128 22 of of IN cord-000248-zueoyesj 1128 23 CD44 CD44 NNP cord-000248-zueoyesj 1128 24 surface surface NN cord-000248-zueoyesj 1128 25 expression expression NN cord-000248-zueoyesj 1128 26 , , , cord-000248-zueoyesj 1128 27 MMP-2 MMP-2 NNP cord-000248-zueoyesj 1128 28 secretion secretion NN cord-000248-zueoyesj 1128 29 , , , cord-000248-zueoyesj 1128 30 and and CC cord-000248-zueoyesj 1128 31 cell cell NN cord-000248-zueoyesj 1128 32 migration migration NN cord-000248-zueoyesj 1128 33 by by IN cord-000248-zueoyesj 1128 34 osteopontin osteopontin NNP cord-000248-zueoyesj 1128 35 in in IN cord-000248-zueoyesj 1128 36 human human JJ cord-000248-zueoyesj 1128 37 melanoma melanoma NN cord-000248-zueoyesj 1128 38 cells cell NNS cord-000248-zueoyesj 1128 39 Regulation regulation NN cord-000248-zueoyesj 1128 40 of of IN cord-000248-zueoyesj 1128 41 mesenchymal mesenchymal JJ cord-000248-zueoyesj 1128 42 stem stem NN cord-000248-zueoyesj 1128 43 cell cell NN cord-000248-zueoyesj 1128 44 and and CC cord-000248-zueoyesj 1128 45 chondrocyte chondrocyte NN cord-000248-zueoyesj 1128 46 differentiation differentiation NN cord-000248-zueoyesj 1128 47 by by IN cord-000248-zueoyesj 1128 48 MIA MIA NNP cord-000248-zueoyesj 1128 49 Systematic systematic JJ cord-000248-zueoyesj 1128 50 search search NN cord-000248-zueoyesj 1128 51 for for IN cord-000248-zueoyesj 1128 52 the the DT cord-000248-zueoyesj 1128 53 best good JJS cord-000248-zueoyesj 1128 54 gene gene NN cord-000248-zueoyesj 1128 55 expression expression NN cord-000248-zueoyesj 1128 56 markers marker NNS cord-000248-zueoyesj 1128 57 for for IN cord-000248-zueoyesj 1128 58 melanoma melanoma NN cord-000248-zueoyesj 1128 59 micrometastasis micrometastasis NN cord-000248-zueoyesj 1128 60 detection detection NN cord-000248-zueoyesj 1128 61 CD44 CD44 NNP cord-000248-zueoyesj 1128 62 and and CC cord-000248-zueoyesj 1128 63 the the DT cord-000248-zueoyesj 1128 64 adhesion adhesion NN cord-000248-zueoyesj 1128 65 of of IN cord-000248-zueoyesj 1128 66 neoplastic neoplastic JJ cord-000248-zueoyesj 1128 67 cells cell NNS cord-000248-zueoyesj 1128 68 Non Non NNP cord-000248-zueoyesj 1128 69 - - JJ cord-000248-zueoyesj 1128 70 RGD RGD NNP cord-000248-zueoyesj 1128 71 domains domain NNS cord-000248-zueoyesj 1128 72 of of IN cord-000248-zueoyesj 1128 73 osteopontin osteopontin NNP cord-000248-zueoyesj 1128 74 promote promote VBP cord-000248-zueoyesj 1128 75 cell cell NN cord-000248-zueoyesj 1128 76 adhesion adhesion NN cord-000248-zueoyesj 1128 77 without without IN cord-000248-zueoyesj 1128 78 involving involve VBG cord-000248-zueoyesj 1128 79 alpha alpha NN cord-000248-zueoyesj 1128 80 v v NN cord-000248-zueoyesj 1129 1 integrins integrins NNP cord-000248-zueoyesj 1129 2 Secreted secrete VBD cord-000248-zueoyesj 1129 3 phosphoprotein phosphoprotein NN cord-000248-zueoyesj 1129 4 mRNA mrna NN cord-000248-zueoyesj 1129 5 is be VBZ cord-000248-zueoyesj 1129 6 induced induce VBN cord-000248-zueoyesj 1129 7 during during IN cord-000248-zueoyesj 1129 8 multi multi JJ cord-000248-zueoyesj 1129 9 - - JJ cord-000248-zueoyesj 1129 10 stage stage JJ cord-000248-zueoyesj 1129 11 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1129 12 in in IN cord-000248-zueoyesj 1129 13 mouse mouse NN cord-000248-zueoyesj 1129 14 skin skin NN cord-000248-zueoyesj 1129 15 and and CC cord-000248-zueoyesj 1129 16 correlates correlate VBZ cord-000248-zueoyesj 1129 17 with with IN cord-000248-zueoyesj 1129 18 the the DT cord-000248-zueoyesj 1129 19 metastatic metastatic JJ cord-000248-zueoyesj 1129 20 potential potential NN cord-000248-zueoyesj 1129 21 of of IN cord-000248-zueoyesj 1129 22 murine murine JJ cord-000248-zueoyesj 1129 23 fibroblasts fibroblast NNS cord-000248-zueoyesj 1129 24 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1129 25 as as IN cord-000248-zueoyesj 1129 26 a a DT cord-000248-zueoyesj 1129 27 molecular molecular JJ cord-000248-zueoyesj 1129 28 prognostic prognostic JJ cord-000248-zueoyesj 1129 29 marker marker NN cord-000248-zueoyesj 1129 30 for for IN cord-000248-zueoyesj 1129 31 melanoma melanoma NN cord-000248-zueoyesj 1129 32 Aurora Aurora NNP cord-000248-zueoyesj 1129 33 B B NNP cord-000248-zueoyesj 1129 34 - - HYPH cord-000248-zueoyesj 1129 35 mediated mediate VBN cord-000248-zueoyesj 1129 36 abscission abscission NN cord-000248-zueoyesj 1129 37 checkpoint checkpoint NN cord-000248-zueoyesj 1129 38 protects protect VBZ cord-000248-zueoyesj 1129 39 against against IN cord-000248-zueoyesj 1129 40 tetraploidization tetraploidization NNP cord-000248-zueoyesj 1129 41 SNS-314 SNS-314 NNP cord-000248-zueoyesj 1129 42 , , , cord-000248-zueoyesj 1129 43 a a DT cord-000248-zueoyesj 1129 44 pan pan JJ cord-000248-zueoyesj 1129 45 - - JJ cord-000248-zueoyesj 1129 46 Aurora Aurora NNP cord-000248-zueoyesj 1129 47 kinase kinase NN cord-000248-zueoyesj 1129 48 inhibitor inhibitor NN cord-000248-zueoyesj 1129 49 , , , cord-000248-zueoyesj 1129 50 shows show VBZ cord-000248-zueoyesj 1129 51 potent potent JJ cord-000248-zueoyesj 1129 52 anti anti JJ cord-000248-zueoyesj 1129 53 - - JJ cord-000248-zueoyesj 1129 54 tumor tumor JJ cord-000248-zueoyesj 1129 55 activity activity NN cord-000248-zueoyesj 1129 56 and and CC cord-000248-zueoyesj 1129 57 dosing dose VBG cord-000248-zueoyesj 1129 58 flexibility flexibility NN cord-000248-zueoyesj 1129 59 in in IN cord-000248-zueoyesj 1129 60 vivo vivo NNP cord-000248-zueoyesj 1129 61 MAP MAP NNP cord-000248-zueoyesj 1129 62 kinase kinase NN cord-000248-zueoyesj 1129 63 meets meet VBZ cord-000248-zueoyesj 1129 64 mitosis mitosis NN cord-000248-zueoyesj 1129 65 : : : cord-000248-zueoyesj 1130 1 a a DT cord-000248-zueoyesj 1130 2 role role NN cord-000248-zueoyesj 1130 3 for for IN cord-000248-zueoyesj 1130 4 Raf Raf NNP cord-000248-zueoyesj 1130 5 Kinase Kinase NNP cord-000248-zueoyesj 1130 6 Inhibitory Inhibitory NNP cord-000248-zueoyesj 1130 7 Protein Protein NNP cord-000248-zueoyesj 1130 8 in in IN cord-000248-zueoyesj 1130 9 spindle spindle NN cord-000248-zueoyesj 1130 10 checkpoint checkpoint NN cord-000248-zueoyesj 1130 11 regulation regulation NN cord-000248-zueoyesj 1130 12 Molecular molecular JJ cord-000248-zueoyesj 1130 13 classification classification NN cord-000248-zueoyesj 1130 14 of of IN cord-000248-zueoyesj 1130 15 melanoma melanoma NN cord-000248-zueoyesj 1130 16 using use VBG cord-000248-zueoyesj 1130 17 real real JJ cord-000248-zueoyesj 1130 18 - - HYPH cord-000248-zueoyesj 1130 19 time time NN cord-000248-zueoyesj 1130 20 quantitative quantitative JJ cord-000248-zueoyesj 1130 21 reverse reverse NN cord-000248-zueoyesj 1130 22 transcriptasepolymerase transcriptasepolymerase NN cord-000248-zueoyesj 1130 23 chain chain NN cord-000248-zueoyesj 1130 24 reaction reaction NN cord-000248-zueoyesj 1130 25 The the DT cord-000248-zueoyesj 1130 26 gene gene NN cord-000248-zueoyesj 1130 27 expression expression NN cord-000248-zueoyesj 1130 28 profiles profile NNS cord-000248-zueoyesj 1130 29 of of IN cord-000248-zueoyesj 1130 30 primary primary JJ cord-000248-zueoyesj 1130 31 and and CC cord-000248-zueoyesj 1130 32 metastatic metastatic JJ cord-000248-zueoyesj 1130 33 melanoma melanoma NN cord-000248-zueoyesj 1130 34 yields yield VBZ cord-000248-zueoyesj 1130 35 a a DT cord-000248-zueoyesj 1130 36 transition transition NN cord-000248-zueoyesj 1130 37 point point NN cord-000248-zueoyesj 1130 38 of of IN cord-000248-zueoyesj 1130 39 tumor tumor NN cord-000248-zueoyesj 1130 40 progression progression NN cord-000248-zueoyesj 1130 41 and and CC cord-000248-zueoyesj 1130 42 metastasis metastasis NN cord-000248-zueoyesj 1130 43 Defective defective JJ cord-000248-zueoyesj 1130 44 cell cell NN cord-000248-zueoyesj 1130 45 cycle cycle NN cord-000248-zueoyesj 1130 46 checkpoint checkpoint NN cord-000248-zueoyesj 1130 47 functions function NNS cord-000248-zueoyesj 1130 48 in in IN cord-000248-zueoyesj 1130 49 melanoma melanoma NN cord-000248-zueoyesj 1130 50 are be VBP cord-000248-zueoyesj 1130 51 associated associate VBN cord-000248-zueoyesj 1130 52 with with IN cord-000248-zueoyesj 1130 53 altered altered JJ cord-000248-zueoyesj 1130 54 patterns pattern NNS cord-000248-zueoyesj 1130 55 of of IN cord-000248-zueoyesj 1130 56 gene gene NN cord-000248-zueoyesj 1130 57 expression expression NN cord-000248-zueoyesj 1130 58 Cdc7 cdc7 CD cord-000248-zueoyesj 1130 59 expression expression NN cord-000248-zueoyesj 1130 60 in in IN cord-000248-zueoyesj 1130 61 melanomas melanoma NNS cord-000248-zueoyesj 1130 62 , , , cord-000248-zueoyesj 1131 1 Spitz spitz JJ cord-000248-zueoyesj 1131 2 tumors tumor NNS cord-000248-zueoyesj 1131 3 and and CC cord-000248-zueoyesj 1131 4 melanocytic melanocytic JJ cord-000248-zueoyesj 1131 5 nevi nevus NNS cord-000248-zueoyesj 1131 6 Global global JJ cord-000248-zueoyesj 1131 7 analysis analysis NN cord-000248-zueoyesj 1131 8 of of IN cord-000248-zueoyesj 1131 9 gene gene NN cord-000248-zueoyesj 1131 10 expression expression NN cord-000248-zueoyesj 1131 11 changes change NNS cord-000248-zueoyesj 1131 12 during during IN cord-000248-zueoyesj 1131 13 retinoic retinoic JJ cord-000248-zueoyesj 1131 14 acid acid NN cord-000248-zueoyesj 1131 15 - - HYPH cord-000248-zueoyesj 1131 16 induced induce VBN cord-000248-zueoyesj 1131 17 growth growth NN cord-000248-zueoyesj 1131 18 arrest arrest NN cord-000248-zueoyesj 1131 19 and and CC cord-000248-zueoyesj 1131 20 differentiation differentiation NN cord-000248-zueoyesj 1131 21 of of IN cord-000248-zueoyesj 1131 22 melanoma melanoma NN cord-000248-zueoyesj 1131 23 : : : cord-000248-zueoyesj 1131 24 comparison comparison NN cord-000248-zueoyesj 1131 25 to to TO cord-000248-zueoyesj 1131 26 differentially differentially RB cord-000248-zueoyesj 1131 27 expressed express VBN cord-000248-zueoyesj 1131 28 genes gene NNS cord-000248-zueoyesj 1131 29 in in IN cord-000248-zueoyesj 1131 30 melanocytes melanocyte NNS cord-000248-zueoyesj 1131 31 vs vs IN cord-000248-zueoyesj 1131 32 melanoma melanoma NN cord-000248-zueoyesj 1131 33 Cell cell NN cord-000248-zueoyesj 1131 34 cycle cycle NN cord-000248-zueoyesj 1131 35 regulation regulation NN cord-000248-zueoyesj 1131 36 of of IN cord-000248-zueoyesj 1131 37 central central JJ cord-000248-zueoyesj 1131 38 spindle spindle NN cord-000248-zueoyesj 1131 39 assembly assembly NN cord-000248-zueoyesj 1131 40 Relocation Relocation NNP cord-000248-zueoyesj 1131 41 of of IN cord-000248-zueoyesj 1131 42 Aurora Aurora NNP cord-000248-zueoyesj 1131 43 B B NNP cord-000248-zueoyesj 1131 44 from from IN cord-000248-zueoyesj 1131 45 centromeres centromere NNS cord-000248-zueoyesj 1131 46 to to IN cord-000248-zueoyesj 1131 47 the the DT cord-000248-zueoyesj 1131 48 central central JJ cord-000248-zueoyesj 1131 49 spindle spindle NN cord-000248-zueoyesj 1131 50 at at IN cord-000248-zueoyesj 1131 51 the the DT cord-000248-zueoyesj 1131 52 metaphase metaphase NN cord-000248-zueoyesj 1131 53 to to TO cord-000248-zueoyesj 1131 54 anaphase anaphase VB cord-000248-zueoyesj 1131 55 transition transition NN cord-000248-zueoyesj 1131 56 requires require VBZ cord-000248-zueoyesj 1131 57 MKlp2 MKlp2 NNP cord-000248-zueoyesj 1131 58 ASAP ASAP NNP cord-000248-zueoyesj 1131 59 is be VBZ cord-000248-zueoyesj 1131 60 a a DT cord-000248-zueoyesj 1131 61 novel novel JJ cord-000248-zueoyesj 1131 62 substrate substrate NN cord-000248-zueoyesj 1131 63 of of IN cord-000248-zueoyesj 1131 64 the the DT cord-000248-zueoyesj 1131 65 oncogenic oncogenic JJ cord-000248-zueoyesj 1131 66 mitotic mitotic JJ cord-000248-zueoyesj 1131 67 kinase kinase NN cord-000248-zueoyesj 1131 68 Aurora Aurora NNP cord-000248-zueoyesj 1131 69 - - HYPH cord-000248-zueoyesj 1131 70 A A NNP cord-000248-zueoyesj 1131 71 : : : cord-000248-zueoyesj 1131 72 phosphorylation phosphorylation NN cord-000248-zueoyesj 1131 73 on on IN cord-000248-zueoyesj 1131 74 Ser625 Ser625 -LRB- cord-000248-zueoyesj 1131 75 is be VBZ cord-000248-zueoyesj 1131 76 essential essential JJ cord-000248-zueoyesj 1131 77 to to TO cord-000248-zueoyesj 1131 78 spindle spindle VB cord-000248-zueoyesj 1131 79 formation formation NN cord-000248-zueoyesj 1131 80 and and CC cord-000248-zueoyesj 1131 81 mitosis mitosis NN cord-000248-zueoyesj 1132 1 ASAP asap RB cord-000248-zueoyesj 1132 2 , , , cord-000248-zueoyesj 1133 1 a a DT cord-000248-zueoyesj 1133 2 human human JJ cord-000248-zueoyesj 1133 3 microtubule microtubule NN cord-000248-zueoyesj 1133 4 - - HYPH cord-000248-zueoyesj 1133 5 associated associate VBN cord-000248-zueoyesj 1133 6 protein protein NN cord-000248-zueoyesj 1133 7 required require VBN cord-000248-zueoyesj 1133 8 for for IN cord-000248-zueoyesj 1133 9 bipolar bipolar JJ cord-000248-zueoyesj 1133 10 spindle spindle NN cord-000248-zueoyesj 1133 11 assembly assembly NN cord-000248-zueoyesj 1133 12 and and CC cord-000248-zueoyesj 1133 13 cytokinesis cytokinesis VB cord-000248-zueoyesj 1133 14 Comprehensive comprehensive JJ cord-000248-zueoyesj 1133 15 expression expression NN cord-000248-zueoyesj 1133 16 profiling profiling NN cord-000248-zueoyesj 1133 17 of of IN cord-000248-zueoyesj 1133 18 tumor tumor NN cord-000248-zueoyesj 1133 19 cell cell NN cord-000248-zueoyesj 1133 20 lines line NNS cord-000248-zueoyesj 1133 21 identifies identify VBZ cord-000248-zueoyesj 1133 22 molecular molecular JJ cord-000248-zueoyesj 1133 23 signatures signature NNS cord-000248-zueoyesj 1133 24 of of IN cord-000248-zueoyesj 1133 25 melanoma melanoma NN cord-000248-zueoyesj 1133 26 progression progression NN cord-000248-zueoyesj 1134 1 The the DT cord-000248-zueoyesj 1134 2 Nek6 Nek6 NNP cord-000248-zueoyesj 1134 3 and and CC cord-000248-zueoyesj 1134 4 Nek7 Nek7 NNP cord-000248-zueoyesj 1134 5 protein protein NN cord-000248-zueoyesj 1134 6 kinases kinase NNS cord-000248-zueoyesj 1134 7 are be VBP cord-000248-zueoyesj 1134 8 required require VBN cord-000248-zueoyesj 1134 9 for for IN cord-000248-zueoyesj 1134 10 robust robust JJ cord-000248-zueoyesj 1134 11 mitotic mitotic JJ cord-000248-zueoyesj 1134 12 spindle spindle NN cord-000248-zueoyesj 1134 13 formation formation NN cord-000248-zueoyesj 1134 14 and and CC cord-000248-zueoyesj 1134 15 cytokinesis cytokinesis NN cord-000248-zueoyesj 1135 1 The the DT cord-000248-zueoyesj 1135 2 NIMAfamily NIMAfamily NNP cord-000248-zueoyesj 1135 3 kinase kinase NNP cord-000248-zueoyesj 1135 4 Nek6 Nek6 NNP cord-000248-zueoyesj 1135 5 phosphorylates phosphorylate VBZ cord-000248-zueoyesj 1135 6 the the DT cord-000248-zueoyesj 1135 7 kinesin kinesin NN cord-000248-zueoyesj 1135 8 Eg5 eg5 CD cord-000248-zueoyesj 1135 9 at at IN cord-000248-zueoyesj 1135 10 a a DT cord-000248-zueoyesj 1135 11 novel novel NN cord-000248-zueoyesj 1135 12 site site NN cord-000248-zueoyesj 1135 13 necessary necessary JJ cord-000248-zueoyesj 1135 14 for for IN cord-000248-zueoyesj 1135 15 mitotic mitotic JJ cord-000248-zueoyesj 1135 16 spindle spindle NN cord-000248-zueoyesj 1135 17 formation formation NN cord-000248-zueoyesj 1135 18 Integrative integrative JJ cord-000248-zueoyesj 1135 19 approach approach NN cord-000248-zueoyesj 1135 20 for for IN cord-000248-zueoyesj 1135 21 differentially differentially RB cord-000248-zueoyesj 1135 22 overexpressed overexpresse VBN cord-000248-zueoyesj 1135 23 genes gene NNS cord-000248-zueoyesj 1135 24 in in IN cord-000248-zueoyesj 1135 25 gastric gastric JJ cord-000248-zueoyesj 1135 26 cancer cancer NN cord-000248-zueoyesj 1135 27 by by IN cord-000248-zueoyesj 1135 28 combining combine VBG cord-000248-zueoyesj 1135 29 large large JJ cord-000248-zueoyesj 1135 30 - - HYPH cord-000248-zueoyesj 1135 31 scale scale NN cord-000248-zueoyesj 1135 32 gene gene NN cord-000248-zueoyesj 1135 33 expression expression NN cord-000248-zueoyesj 1135 34 profiling profiling NN cord-000248-zueoyesj 1135 35 and and CC cord-000248-zueoyesj 1135 36 network network NN cord-000248-zueoyesj 1135 37 analysis analysis NN cord-000248-zueoyesj 1136 1 Nek6 Nek6 NNP cord-000248-zueoyesj 1136 2 is be VBZ cord-000248-zueoyesj 1136 3 involved involve VBN cord-000248-zueoyesj 1136 4 in in IN cord-000248-zueoyesj 1136 5 G2 G2 NNP cord-000248-zueoyesj 1136 6 / / SYM cord-000248-zueoyesj 1136 7 M M NNP cord-000248-zueoyesj 1136 8 phase phase NN cord-000248-zueoyesj 1136 9 cell cell NN cord-000248-zueoyesj 1136 10 cycle cycle NN cord-000248-zueoyesj 1136 11 arrest arrest NN cord-000248-zueoyesj 1136 12 through through IN cord-000248-zueoyesj 1136 13 DNA dna NN cord-000248-zueoyesj 1136 14 damage damage NN cord-000248-zueoyesj 1136 15 - - HYPH cord-000248-zueoyesj 1136 16 induced induce VBN cord-000248-zueoyesj 1136 17 phosphorylation phosphorylation NN cord-000248-zueoyesj 1137 1 Polo polo NN cord-000248-zueoyesj 1137 2 - - HYPH cord-000248-zueoyesj 1137 3 like like JJ cord-000248-zueoyesj 1137 4 kinase kinase NN cord-000248-zueoyesj 1137 5 1 1 CD cord-000248-zueoyesj 1138 1 ( ( -LRB- cord-000248-zueoyesj 1138 2 Plk1 Plk1 NNP cord-000248-zueoyesj 1138 3 ) ) -RRB- cord-000248-zueoyesj 1138 4 in in IN cord-000248-zueoyesj 1138 5 non non JJ cord-000248-zueoyesj 1138 6 - - JJ cord-000248-zueoyesj 1138 7 melanoma melanoma JJ cord-000248-zueoyesj 1138 8 skin skin NN cord-000248-zueoyesj 1138 9 cancers cancer NNS cord-000248-zueoyesj 1139 1 Targeted target VBN cord-000248-zueoyesj 1139 2 Depletion depletion NN cord-000248-zueoyesj 1139 3 of of IN cord-000248-zueoyesj 1140 1 Polo Polo NNP cord-000248-zueoyesj 1140 2 - - HYPH cord-000248-zueoyesj 1140 3 Like Like NNP cord-000248-zueoyesj 1140 4 Kinase Kinase NNP cord-000248-zueoyesj 1140 5 ( ( -LRB- cord-000248-zueoyesj 1140 6 Plk Plk NNP cord-000248-zueoyesj 1140 7 ) ) -RRB- cord-000248-zueoyesj 1141 1 1 1 LS cord-000248-zueoyesj 1142 1 Through through IN cord-000248-zueoyesj 1142 2 Lentiviral Lentiviral NNP cord-000248-zueoyesj 1142 3 shRNA shrna NN cord-000248-zueoyesj 1142 4 or or CC cord-000248-zueoyesj 1143 1 a a DT cord-000248-zueoyesj 1143 2 Small Small NNP cord-000248-zueoyesj 1143 3 - - HYPH cord-000248-zueoyesj 1143 4 Molecule molecule NN cord-000248-zueoyesj 1143 5 Inhibitor inhibitor NN cord-000248-zueoyesj 1143 6 Causes cause VBZ cord-000248-zueoyesj 1143 7 Mitotic Mitotic NNP cord-000248-zueoyesj 1143 8 Catastrophe Catastrophe NNP cord-000248-zueoyesj 1143 9 and and CC cord-000248-zueoyesj 1143 10 Induction Induction NNP cord-000248-zueoyesj 1143 11 of of IN cord-000248-zueoyesj 1143 12 Apoptosis Apoptosis NNP cord-000248-zueoyesj 1143 13 in in IN cord-000248-zueoyesj 1143 14 Human Human NNP cord-000248-zueoyesj 1143 15 Melanoma Melanoma NNP cord-000248-zueoyesj 1143 16 Cells cell NNS cord-000248-zueoyesj 1143 17 Expression expression NN cord-000248-zueoyesj 1143 18 and and CC cord-000248-zueoyesj 1143 19 possible possible JJ cord-000248-zueoyesj 1143 20 role role NN cord-000248-zueoyesj 1143 21 of of IN cord-000248-zueoyesj 1143 22 hPTTG1 hpttg1 NN cord-000248-zueoyesj 1143 23 / / SYM cord-000248-zueoyesj 1143 24 securin securin NN cord-000248-zueoyesj 1143 25 in in IN cord-000248-zueoyesj 1143 26 cutaneous cutaneous JJ cord-000248-zueoyesj 1143 27 malignant malignant JJ cord-000248-zueoyesj 1143 28 melanoma melanoma NN cord-000248-zueoyesj 1143 29 Antagonism antagonism NN cord-000248-zueoyesj 1143 30 of of IN cord-000248-zueoyesj 1143 31 p66shc p66shc NNP cord-000248-zueoyesj 1143 32 by by IN cord-000248-zueoyesj 1143 33 melanoma melanoma NN cord-000248-zueoyesj 1143 34 inhibitory inhibitory JJ cord-000248-zueoyesj 1143 35 activity activity NN cord-000248-zueoyesj 1143 36 RaLP RaLP NNP cord-000248-zueoyesj 1143 37 , , , cord-000248-zueoyesj 1143 38 a a DT cord-000248-zueoyesj 1143 39 new new JJ cord-000248-zueoyesj 1143 40 member member NN cord-000248-zueoyesj 1143 41 of of IN cord-000248-zueoyesj 1143 42 the the DT cord-000248-zueoyesj 1143 43 Src Src NNP cord-000248-zueoyesj 1143 44 homology homology NN cord-000248-zueoyesj 1143 45 and and CC cord-000248-zueoyesj 1143 46 collagen collagen NN cord-000248-zueoyesj 1143 47 family family NN cord-000248-zueoyesj 1143 48 , , , cord-000248-zueoyesj 1143 49 regulates regulate VBZ cord-000248-zueoyesj 1143 50 cell cell NN cord-000248-zueoyesj 1143 51 migration migration NN cord-000248-zueoyesj 1143 52 and and CC cord-000248-zueoyesj 1143 53 tumor tumor NN cord-000248-zueoyesj 1143 54 growth growth NN cord-000248-zueoyesj 1143 55 of of IN cord-000248-zueoyesj 1143 56 metastatic metastatic JJ cord-000248-zueoyesj 1143 57 melanomas melanoma NNS cord-000248-zueoyesj 1143 58 Melanoma melanoma NN cord-000248-zueoyesj 1143 59 : : : cord-000248-zueoyesj 1143 60 targeting target VBG cord-000248-zueoyesj 1143 61 signaling signal VBG cord-000248-zueoyesj 1143 62 pathways pathway NNS cord-000248-zueoyesj 1143 63 and and CC cord-000248-zueoyesj 1144 1 RaLP RaLP NNP cord-000248-zueoyesj 1144 2 Deregulated deregulate VBN cord-000248-zueoyesj 1144 3 E2F e2f NN cord-000248-zueoyesj 1144 4 transcriptional transcriptional JJ cord-000248-zueoyesj 1144 5 activity activity NN cord-000248-zueoyesj 1144 6 in in IN cord-000248-zueoyesj 1144 7 autonomously autonomously RB cord-000248-zueoyesj 1144 8 growing grow VBG cord-000248-zueoyesj 1144 9 melanoma melanoma NN cord-000248-zueoyesj 1144 10 cells cell NNS cord-000248-zueoyesj 1145 1 Arpc1b Arpc1b NNP cord-000248-zueoyesj 1145 2 gene gene NN cord-000248-zueoyesj 1145 3 is be VBZ cord-000248-zueoyesj 1145 4 a a DT cord-000248-zueoyesj 1145 5 candidate candidate NN cord-000248-zueoyesj 1145 6 prediction prediction NN cord-000248-zueoyesj 1145 7 marker marker NN cord-000248-zueoyesj 1145 8 for for IN cord-000248-zueoyesj 1145 9 choroidal choroidal JJ cord-000248-zueoyesj 1145 10 malignant malignant JJ cord-000248-zueoyesj 1145 11 melanomas melanoma NNS cord-000248-zueoyesj 1145 12 sensitive sensitive JJ cord-000248-zueoyesj 1145 13 to to IN cord-000248-zueoyesj 1145 14 radiotherapy radiotherapy NN cord-000248-zueoyesj 1146 1 A a DT cord-000248-zueoyesj 1146 2 multi multi JJ cord-000248-zueoyesj 1146 3 - - JJ cord-000248-zueoyesj 1146 4 marker marker JJ cord-000248-zueoyesj 1146 5 assay assay NN cord-000248-zueoyesj 1146 6 to to TO cord-000248-zueoyesj 1146 7 distinguish distinguish VB cord-000248-zueoyesj 1146 8 malignant malignant JJ cord-000248-zueoyesj 1146 9 melanomas melanoma NNS cord-000248-zueoyesj 1146 10 from from IN cord-000248-zueoyesj 1146 11 benign benign JJ cord-000248-zueoyesj 1146 12 nevi nevus NNS cord-000248-zueoyesj 1146 13 BCCIP BCCIP NNP cord-000248-zueoyesj 1146 14 functions function NNS cord-000248-zueoyesj 1146 15 through through IN cord-000248-zueoyesj 1146 16 p53 p53 NN cord-000248-zueoyesj 1146 17 to to TO cord-000248-zueoyesj 1146 18 regulate regulate VB cord-000248-zueoyesj 1146 19 the the DT cord-000248-zueoyesj 1146 20 expression expression NN cord-000248-zueoyesj 1146 21 of of IN cord-000248-zueoyesj 1146 22 p21Waf1 p21waf1 CD cord-000248-zueoyesj 1146 23 / / SYM cord-000248-zueoyesj 1146 24 Cip1 Cip1 NNP cord-000248-zueoyesj 1146 25 Identification Identification NNP cord-000248-zueoyesj 1146 26 of of IN cord-000248-zueoyesj 1146 27 genes gene NNS cord-000248-zueoyesj 1146 28 expressed express VBN cord-000248-zueoyesj 1146 29 in in IN cord-000248-zueoyesj 1146 30 malignant malignant JJ cord-000248-zueoyesj 1146 31 cells cell NNS cord-000248-zueoyesj 1146 32 that that WDT cord-000248-zueoyesj 1146 33 promote promote VBP cord-000248-zueoyesj 1146 34 invasion invasion NN cord-000248-zueoyesj 1146 35 Chemokine chemokine JJ cord-000248-zueoyesj 1146 36 expression expression NN cord-000248-zueoyesj 1146 37 in in IN cord-000248-zueoyesj 1146 38 melanoma melanoma NN cord-000248-zueoyesj 1146 39 metastases metastasis NNS cord-000248-zueoyesj 1146 40 associated associate VBN cord-000248-zueoyesj 1146 41 with with IN cord-000248-zueoyesj 1146 42 CD8 CD8 NNP cord-000248-zueoyesj 1146 43 + + CC cord-000248-zueoyesj 1146 44 T T NNP cord-000248-zueoyesj 1146 45 - - HYPH cord-000248-zueoyesj 1146 46 cell cell NN cord-000248-zueoyesj 1146 47 recruitment recruitment NN cord-000248-zueoyesj 1146 48 A a DT cord-000248-zueoyesj 1146 49 potential potential JJ cord-000248-zueoyesj 1146 50 immune immune JJ cord-000248-zueoyesj 1146 51 escape escape NN cord-000248-zueoyesj 1146 52 mechanism mechanism NN cord-000248-zueoyesj 1146 53 by by IN cord-000248-zueoyesj 1146 54 melanoma melanoma NN cord-000248-zueoyesj 1146 55 cells cell NNS cord-000248-zueoyesj 1146 56 through through IN cord-000248-zueoyesj 1146 57 the the DT cord-000248-zueoyesj 1146 58 activation activation NN cord-000248-zueoyesj 1146 59 of of IN cord-000248-zueoyesj 1146 60 chemokine chemokine NN cord-000248-zueoyesj 1146 61 - - HYPH cord-000248-zueoyesj 1146 62 induced induce VBN cord-000248-zueoyesj 1146 63 T t NN cord-000248-zueoyesj 1146 64 cell cell NN cord-000248-zueoyesj 1146 65 death death NN cord-000248-zueoyesj 1146 66 Multiplex Multiplex NNP cord-000248-zueoyesj 1146 67 analysis analysis NN cord-000248-zueoyesj 1146 68 of of IN cord-000248-zueoyesj 1146 69 serum serum NN cord-000248-zueoyesj 1146 70 cytokines cytokine NNS cord-000248-zueoyesj 1146 71 in in IN cord-000248-zueoyesj 1146 72 melanoma melanoma NN cord-000248-zueoyesj 1146 73 patients patient NNS cord-000248-zueoyesj 1146 74 treated treat VBN cord-000248-zueoyesj 1146 75 with with IN cord-000248-zueoyesj 1146 76 interferon interferon NN cord-000248-zueoyesj 1146 77 - - HYPH cord-000248-zueoyesj 1146 78 alpha2b alpha2b NNP cord-000248-zueoyesj 1146 79 Regulation Regulation NNP cord-000248-zueoyesj 1146 80 of of IN cord-000248-zueoyesj 1146 81 centromeric centromeric JJ cord-000248-zueoyesj 1146 82 cohesion cohesion NN cord-000248-zueoyesj 1146 83 by by IN cord-000248-zueoyesj 1146 84 sororin sororin NNP cord-000248-zueoyesj 1146 85 independently independently RB cord-000248-zueoyesj 1146 86 of of IN cord-000248-zueoyesj 1146 87 the the DT cord-000248-zueoyesj 1146 88 APC APC NNP cord-000248-zueoyesj 1146 89 / / SYM cord-000248-zueoyesj 1146 90 C C NNP cord-000248-zueoyesj 1146 91 Sororin Sororin NNP cord-000248-zueoyesj 1146 92 is be VBZ cord-000248-zueoyesj 1146 93 required require VBN cord-000248-zueoyesj 1146 94 for for IN cord-000248-zueoyesj 1146 95 stable stable JJ cord-000248-zueoyesj 1146 96 binding binding NN cord-000248-zueoyesj 1146 97 of of IN cord-000248-zueoyesj 1146 98 cohesin cohesin NNS cord-000248-zueoyesj 1146 99 to to TO cord-000248-zueoyesj 1146 100 chromatin chromatin VB cord-000248-zueoyesj 1146 101 and and CC cord-000248-zueoyesj 1146 102 for for IN cord-000248-zueoyesj 1146 103 sister sister NN cord-000248-zueoyesj 1146 104 chromatid chromatid JJ cord-000248-zueoyesj 1146 105 cohesion cohesion NN cord-000248-zueoyesj 1146 106 in in IN cord-000248-zueoyesj 1146 107 interphase interphase NN cord-000248-zueoyesj 1146 108 Sororin Sororin NNP cord-000248-zueoyesj 1146 109 , , , cord-000248-zueoyesj 1146 110 the the DT cord-000248-zueoyesj 1146 111 cell cell NN cord-000248-zueoyesj 1146 112 cycle cycle NN cord-000248-zueoyesj 1146 113 and and CC cord-000248-zueoyesj 1146 114 sister sister NN cord-000248-zueoyesj 1146 115 chromatid chromatid JJ cord-000248-zueoyesj 1146 116 cohesion cohesion NN cord-000248-zueoyesj 1146 117 Sororin Sororin NNP cord-000248-zueoyesj 1146 118 , , , cord-000248-zueoyesj 1146 119 a a DT cord-000248-zueoyesj 1146 120 substrate substrate NN cord-000248-zueoyesj 1146 121 of of IN cord-000248-zueoyesj 1146 122 the the DT cord-000248-zueoyesj 1146 123 anaphase anaphase NN cord-000248-zueoyesj 1146 124 - - HYPH cord-000248-zueoyesj 1146 125 promoting promote VBG cord-000248-zueoyesj 1146 126 complex complex NN cord-000248-zueoyesj 1146 127 , , , cord-000248-zueoyesj 1146 128 is be VBZ cord-000248-zueoyesj 1146 129 required require VBN cord-000248-zueoyesj 1146 130 for for IN cord-000248-zueoyesj 1146 131 sister sister NN cord-000248-zueoyesj 1146 132 chromatid chromatid JJ cord-000248-zueoyesj 1146 133 cohesion cohesion NN cord-000248-zueoyesj 1146 134 in in IN cord-000248-zueoyesj 1146 135 vertebrates vertebrate NNS cord-000248-zueoyesj 1147 1 Cooperative cooperative JJ cord-000248-zueoyesj 1147 2 roles role NNS cord-000248-zueoyesj 1147 3 of of IN cord-000248-zueoyesj 1147 4 c c NN cord-000248-zueoyesj 1147 5 - - : cord-000248-zueoyesj 1147 6 Abl Abl NNP cord-000248-zueoyesj 1147 7 and and CC cord-000248-zueoyesj 1147 8 Cdk5 Cdk5 NNP cord-000248-zueoyesj 1147 9 in in IN cord-000248-zueoyesj 1147 10 regulation regulation NN cord-000248-zueoyesj 1147 11 of of IN cord-000248-zueoyesj 1147 12 p53 p53 NN cord-000248-zueoyesj 1147 13 in in IN cord-000248-zueoyesj 1147 14 response response NN cord-000248-zueoyesj 1147 15 to to IN cord-000248-zueoyesj 1147 16 oxidative oxidative JJ cord-000248-zueoyesj 1147 17 stress stress NN cord-000248-zueoyesj 1147 18 Gene Gene NNP cord-000248-zueoyesj 1147 19 expression expression NN cord-000248-zueoyesj 1147 20 signatures signature NNS cord-000248-zueoyesj 1147 21 for for IN cord-000248-zueoyesj 1147 22 tumor tumor NN cord-000248-zueoyesj 1147 23 progression progression NN cord-000248-zueoyesj 1147 24 , , , cord-000248-zueoyesj 1147 25 tumor tumor NN cord-000248-zueoyesj 1147 26 subtype subtype NN cord-000248-zueoyesj 1147 27 , , , cord-000248-zueoyesj 1147 28 and and CC cord-000248-zueoyesj 1147 29 tumor tumor NN cord-000248-zueoyesj 1147 30 thickness thickness NN cord-000248-zueoyesj 1147 31 in in IN cord-000248-zueoyesj 1147 32 laser laser NN cord-000248-zueoyesj 1147 33 - - HYPH cord-000248-zueoyesj 1147 34 microdissected microdissecte VBN cord-000248-zueoyesj 1147 35 melanoma melanoma NN cord-000248-zueoyesj 1147 36 tissues tissue VBZ cord-000248-zueoyesj 1147 37 A a DT cord-000248-zueoyesj 1147 38 receptor receptor NN cord-000248-zueoyesj 1147 39 for for IN cord-000248-zueoyesj 1147 40 the the DT cord-000248-zueoyesj 1147 41 malarial malarial JJ cord-000248-zueoyesj 1147 42 parasite parasite NN cord-000248-zueoyesj 1147 43 Plasmodium plasmodium NN cord-000248-zueoyesj 1147 44 vivax vivax NN cord-000248-zueoyesj 1147 45 : : : cord-000248-zueoyesj 1148 1 the the DT cord-000248-zueoyesj 1148 2 erythrocyte erythrocyte NN cord-000248-zueoyesj 1148 3 chemokine chemokine NN cord-000248-zueoyesj 1148 4 receptor receptor NN cord-000248-zueoyesj 1148 5 MGSA MGSA NNP cord-000248-zueoyesj 1148 6 / / SYM cord-000248-zueoyesj 1148 7 GRO gro NN cord-000248-zueoyesj 1148 8 transcription transcription NN cord-000248-zueoyesj 1148 9 is be VBZ cord-000248-zueoyesj 1148 10 differentially differentially RB cord-000248-zueoyesj 1148 11 regulated regulate VBN cord-000248-zueoyesj 1148 12 in in IN cord-000248-zueoyesj 1148 13 normal normal JJ cord-000248-zueoyesj 1148 14 retinal retinal JJ cord-000248-zueoyesj 1148 15 pigment pigment NN cord-000248-zueoyesj 1148 16 epithelial epithelial NN cord-000248-zueoyesj 1148 17 and and CC cord-000248-zueoyesj 1148 18 melanoma melanoma NN cord-000248-zueoyesj 1148 19 cells cell NNS cord-000248-zueoyesj 1148 20 Nuclear nuclear JJ cord-000248-zueoyesj 1148 21 factor factor NN cord-000248-zueoyesj 1148 22 - - HYPH cord-000248-zueoyesj 1148 23 kappa kappa NN cord-000248-zueoyesj 1148 24 B B NNP cord-000248-zueoyesj 1148 25 activation activation NN cord-000248-zueoyesj 1148 26 by by IN cord-000248-zueoyesj 1148 27 the the DT cord-000248-zueoyesj 1148 28 CXC CXC NNP cord-000248-zueoyesj 1148 29 chemokine chemokine NN cord-000248-zueoyesj 1148 30 melanoma melanoma NN cord-000248-zueoyesj 1148 31 growth growth NN cord-000248-zueoyesj 1148 32 - - HYPH cord-000248-zueoyesj 1148 33 stimulatory stimulatory JJ cord-000248-zueoyesj 1148 34 activity activity NN cord-000248-zueoyesj 1148 35 / / SYM cord-000248-zueoyesj 1148 36 growth growth NN cord-000248-zueoyesj 1148 37 - - HYPH cord-000248-zueoyesj 1148 38 regulated regulate VBN cord-000248-zueoyesj 1148 39 protein protein NN cord-000248-zueoyesj 1148 40 involves involve VBZ cord-000248-zueoyesj 1148 41 the the DT cord-000248-zueoyesj 1148 42 MEKK1 mekk1 NN cord-000248-zueoyesj 1148 43 / / SYM cord-000248-zueoyesj 1148 44 p38 p38 CD cord-000248-zueoyesj 1148 45 mitogen mitogen NN cord-000248-zueoyesj 1148 46 - - HYPH cord-000248-zueoyesj 1148 47 activated activate VBN cord-000248-zueoyesj 1148 48 protein protein NN cord-000248-zueoyesj 1148 49 kinase kinase NN cord-000248-zueoyesj 1148 50 pathway pathway NN cord-000248-zueoyesj 1148 51 Endothelin-1 Endothelin-1 NNP cord-000248-zueoyesj 1149 1 induces induce VBZ cord-000248-zueoyesj 1150 1 CXCL1 CXCL1 NNP cord-000248-zueoyesj 1150 2 and and CC cord-000248-zueoyesj 1150 3 CXCL8 CXCL8 NNP cord-000248-zueoyesj 1150 4 secretion secretion NN cord-000248-zueoyesj 1150 5 in in IN cord-000248-zueoyesj 1150 6 human human JJ cord-000248-zueoyesj 1150 7 melanoma melanoma NN cord-000248-zueoyesj 1150 8 cells cell NNS cord-000248-zueoyesj 1150 9 Gene Gene NNP cord-000248-zueoyesj 1150 10 expression expression NN cord-000248-zueoyesj 1150 11 profiling profiling NN cord-000248-zueoyesj 1150 12 reveals reveal VBZ cord-000248-zueoyesj 1150 13 cross cross NN cord-000248-zueoyesj 1150 14 - - NN cord-000248-zueoyesj 1150 15 talk talk NN cord-000248-zueoyesj 1150 16 between between IN cord-000248-zueoyesj 1150 17 melanoma melanoma NN cord-000248-zueoyesj 1150 18 and and CC cord-000248-zueoyesj 1150 19 fibroblasts fibroblast NNS cord-000248-zueoyesj 1150 20 : : : cord-000248-zueoyesj 1150 21 implications implication NNS cord-000248-zueoyesj 1150 22 for for IN cord-000248-zueoyesj 1150 23 host host NN cord-000248-zueoyesj 1150 24 - - HYPH cord-000248-zueoyesj 1150 25 tumor tumor NN cord-000248-zueoyesj 1150 26 interactions interaction NNS cord-000248-zueoyesj 1150 27 in in IN cord-000248-zueoyesj 1150 28 metastasis metastasis NN cord-000248-zueoyesj 1151 1 Threedimensional threedimensional JJ cord-000248-zueoyesj 1151 2 culture culture NN cord-000248-zueoyesj 1151 3 of of IN cord-000248-zueoyesj 1151 4 melanoma melanoma NN cord-000248-zueoyesj 1151 5 cells cell NNS cord-000248-zueoyesj 1151 6 profoundly profoundly RB cord-000248-zueoyesj 1151 7 affects affect VBZ cord-000248-zueoyesj 1151 8 gene gene NN cord-000248-zueoyesj 1151 9 expression expression NN cord-000248-zueoyesj 1151 10 profile profile NN cord-000248-zueoyesj 1151 11 : : : cord-000248-zueoyesj 1151 12 a a DT cord-000248-zueoyesj 1151 13 high high JJ cord-000248-zueoyesj 1151 14 density density NN cord-000248-zueoyesj 1151 15 oligonucleotide oligonucleotide IN cord-000248-zueoyesj 1151 16 array array NN cord-000248-zueoyesj 1151 17 study study NN cord-000248-zueoyesj 1151 18 Evidence evidence NN cord-000248-zueoyesj 1151 19 of of IN cord-000248-zueoyesj 1151 20 involvement involvement NN cord-000248-zueoyesj 1151 21 of of IN cord-000248-zueoyesj 1151 22 CXC CXC NNP cord-000248-zueoyesj 1151 23 - - HYPH cord-000248-zueoyesj 1151 24 chemokines chemokine NNS cord-000248-zueoyesj 1151 25 in in IN cord-000248-zueoyesj 1151 26 proliferation proliferation NN cord-000248-zueoyesj 1151 27 of of IN cord-000248-zueoyesj 1151 28 cultivated cultivate VBN cord-000248-zueoyesj 1151 29 human human JJ cord-000248-zueoyesj 1151 30 melanocytes melanocyte NNS cord-000248-zueoyesj 1151 31 Role role NN cord-000248-zueoyesj 1151 32 of of IN cord-000248-zueoyesj 1151 33 CXCL1 CXCL1 NNP cord-000248-zueoyesj 1151 34 in in IN cord-000248-zueoyesj 1151 35 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1151 36 of of IN cord-000248-zueoyesj 1151 37 melanoma melanoma NN cord-000248-zueoyesj 1151 38 Melanoma melanoma NN cord-000248-zueoyesj 1151 39 growth growth NN cord-000248-zueoyesj 1151 40 stimulatory stimulatory JJ cord-000248-zueoyesj 1151 41 activity activity NN cord-000248-zueoyesj 1151 42 in in IN cord-000248-zueoyesj 1151 43 primary primary JJ cord-000248-zueoyesj 1151 44 malignant malignant JJ cord-000248-zueoyesj 1151 45 melanoma melanoma NN cord-000248-zueoyesj 1151 46 : : : cord-000248-zueoyesj 1151 47 prognostic prognostic JJ cord-000248-zueoyesj 1151 48 significance significance NN cord-000248-zueoyesj 1152 1 A a DT cord-000248-zueoyesj 1152 2 novel novel JJ cord-000248-zueoyesj 1152 3 NF nf NN cord-000248-zueoyesj 1152 4 - - HYPH cord-000248-zueoyesj 1152 5 kappa kappa NN cord-000248-zueoyesj 1152 6 B b NN cord-000248-zueoyesj 1152 7 - - HYPH cord-000248-zueoyesj 1152 8 inducing induce VBG cord-000248-zueoyesj 1152 9 kinase kinase NN cord-000248-zueoyesj 1152 10 - - : cord-000248-zueoyesj 1152 11 MAPK MAPK NNP cord-000248-zueoyesj 1152 12 signaling signal VBG cord-000248-zueoyesj 1152 13 pathway pathway NN cord-000248-zueoyesj 1152 14 up up RB cord-000248-zueoyesj 1152 15 - - HYPH cord-000248-zueoyesj 1152 16 regulates regulate VBZ cord-000248-zueoyesj 1152 17 NF nf NN cord-000248-zueoyesj 1152 18 - - HYPH cord-000248-zueoyesj 1152 19 kappa kappa NN cord-000248-zueoyesj 1152 20 B b NN cord-000248-zueoyesj 1152 21 activity activity NN cord-000248-zueoyesj 1152 22 in in IN cord-000248-zueoyesj 1152 23 melanoma melanoma NN cord-000248-zueoyesj 1152 24 cells cell NNS cord-000248-zueoyesj 1152 25 Induction induction NN cord-000248-zueoyesj 1152 26 of of IN cord-000248-zueoyesj 1152 27 melanoma melanoma NN cord-000248-zueoyesj 1152 28 in in IN cord-000248-zueoyesj 1152 29 murine murine JJ cord-000248-zueoyesj 1152 30 macrophage macrophage NN cord-000248-zueoyesj 1152 31 inflammatory inflammatory JJ cord-000248-zueoyesj 1152 32 protein protein NN cord-000248-zueoyesj 1152 33 2 2 CD cord-000248-zueoyesj 1152 34 transgenic transgenic JJ cord-000248-zueoyesj 1152 35 mice mouse NNS cord-000248-zueoyesj 1152 36 heterozygous heterozygous JJ cord-000248-zueoyesj 1152 37 for for IN cord-000248-zueoyesj 1152 38 inhibitor inhibitor NN cord-000248-zueoyesj 1152 39 of of IN cord-000248-zueoyesj 1152 40 kinase kinase NN cord-000248-zueoyesj 1152 41 / / SYM cord-000248-zueoyesj 1152 42 alternate alternate JJ cord-000248-zueoyesj 1152 43 reading reading NN cord-000248-zueoyesj 1152 44 frame frame NN cord-000248-zueoyesj 1153 1 Constitutive constitutive JJ cord-000248-zueoyesj 1153 2 IkappaB IkappaB NNP cord-000248-zueoyesj 1153 3 kinase kinase VBZ cord-000248-zueoyesj 1153 4 activity activity NN cord-000248-zueoyesj 1153 5 correlates correlate VBZ cord-000248-zueoyesj 1153 6 with with IN cord-000248-zueoyesj 1153 7 nuclear nuclear JJ cord-000248-zueoyesj 1153 8 factor factor NN cord-000248-zueoyesj 1153 9 - - : cord-000248-zueoyesj 1153 10 kappaB kappaB NNP cord-000248-zueoyesj 1153 11 activation activation NN cord-000248-zueoyesj 1153 12 in in IN cord-000248-zueoyesj 1153 13 human human JJ cord-000248-zueoyesj 1153 14 melanoma melanoma NN cord-000248-zueoyesj 1153 15 cells cell NNS cord-000248-zueoyesj 1154 1 MGSA MGSA NNP cord-000248-zueoyesj 1154 2 / / SYM cord-000248-zueoyesj 1154 3 GROmediated gromediated JJ cord-000248-zueoyesj 1154 4 melanocyte melanocyte NN cord-000248-zueoyesj 1154 5 transformation transformation NN cord-000248-zueoyesj 1154 6 involves involve VBZ cord-000248-zueoyesj 1154 7 induction induction NN cord-000248-zueoyesj 1154 8 of of IN cord-000248-zueoyesj 1154 9 Ras Ras NNP cord-000248-zueoyesj 1154 10 expression expression NN cord-000248-zueoyesj 1155 1 The the DT cord-000248-zueoyesj 1155 2 tumorigenic tumorigenic JJ cord-000248-zueoyesj 1155 3 and and CC cord-000248-zueoyesj 1155 4 angiogenic angiogenic JJ cord-000248-zueoyesj 1155 5 effects effect NNS cord-000248-zueoyesj 1155 6 of of IN cord-000248-zueoyesj 1155 7 MGSA MGSA NNP cord-000248-zueoyesj 1155 8 / / SYM cord-000248-zueoyesj 1155 9 GRO GRO NNP cord-000248-zueoyesj 1155 10 proteins protein NNS cord-000248-zueoyesj 1155 11 in in IN cord-000248-zueoyesj 1155 12 melanoma melanoma NN cord-000248-zueoyesj 1155 13 Autocrine Autocrine NNP cord-000248-zueoyesj 1155 14 and and CC cord-000248-zueoyesj 1155 15 paracrine paracrine JJ cord-000248-zueoyesj 1155 16 roles role NNS cord-000248-zueoyesj 1155 17 for for IN cord-000248-zueoyesj 1155 18 growth growth NN cord-000248-zueoyesj 1155 19 factors factor NNS cord-000248-zueoyesj 1155 20 in in IN cord-000248-zueoyesj 1155 21 melanoma melanoma NN cord-000248-zueoyesj 1155 22 Localization localization NN cord-000248-zueoyesj 1155 23 of of IN cord-000248-zueoyesj 1155 24 MGSA MGSA NNP cord-000248-zueoyesj 1155 25 / / SYM cord-000248-zueoyesj 1155 26 GRO GRO NNP cord-000248-zueoyesj 1155 27 protein protein NN cord-000248-zueoyesj 1155 28 in in IN cord-000248-zueoyesj 1155 29 cutaneous cutaneous JJ cord-000248-zueoyesj 1155 30 lesions lesion NNS cord-000248-zueoyesj 1156 1 Melanoma melanoma NN cord-000248-zueoyesj 1156 2 growth growth NN cord-000248-zueoyesj 1156 3 stimulatory stimulatory JJ cord-000248-zueoyesj 1156 4 activity activity NN cord-000248-zueoyesj 1156 5 : : : cord-000248-zueoyesj 1156 6 isolation isolation NN cord-000248-zueoyesj 1156 7 from from IN cord-000248-zueoyesj 1156 8 human human JJ cord-000248-zueoyesj 1156 9 melanoma melanoma NN cord-000248-zueoyesj 1156 10 tumors tumor NNS cord-000248-zueoyesj 1156 11 and and CC cord-000248-zueoyesj 1156 12 characterization characterization NN cord-000248-zueoyesj 1156 13 of of IN cord-000248-zueoyesj 1156 14 tissue tissue NN cord-000248-zueoyesj 1156 15 distribution distribution NN cord-000248-zueoyesj 1156 16 Immunoaffinity Immunoaffinity NNP cord-000248-zueoyesj 1156 17 purification purification NN cord-000248-zueoyesj 1156 18 of of IN cord-000248-zueoyesj 1156 19 melanoma melanoma NN cord-000248-zueoyesj 1156 20 growth growth NN cord-000248-zueoyesj 1156 21 stimulatory stimulatory JJ cord-000248-zueoyesj 1156 22 activity activity NN cord-000248-zueoyesj 1156 23 Characterization characterization NN cord-000248-zueoyesj 1156 24 of of IN cord-000248-zueoyesj 1156 25 the the DT cord-000248-zueoyesj 1156 26 role role NN cord-000248-zueoyesj 1156 27 of of IN cord-000248-zueoyesj 1156 28 melanoma melanoma NN cord-000248-zueoyesj 1156 29 growth growth NN cord-000248-zueoyesj 1156 30 stimulatory stimulatory JJ cord-000248-zueoyesj 1156 31 activity activity NN cord-000248-zueoyesj 1156 32 ( ( -LRB- cord-000248-zueoyesj 1156 33 MGSA MGSA NNP cord-000248-zueoyesj 1156 34 ) ) -RRB- cord-000248-zueoyesj 1156 35 in in IN cord-000248-zueoyesj 1156 36 the the DT cord-000248-zueoyesj 1156 37 growth growth NN cord-000248-zueoyesj 1156 38 of of IN cord-000248-zueoyesj 1156 39 normal normal JJ cord-000248-zueoyesj 1156 40 melanocytes melanocyte NNS cord-000248-zueoyesj 1156 41 , , , cord-000248-zueoyesj 1156 42 nevocytes nevocyte NNS cord-000248-zueoyesj 1156 43 , , , cord-000248-zueoyesj 1156 44 and and CC cord-000248-zueoyesj 1156 45 malignant malignant JJ cord-000248-zueoyesj 1156 46 melanocytes melanocyte NNS cord-000248-zueoyesj 1157 1 Enhanced enhanced JJ cord-000248-zueoyesj 1157 2 tumor tumor NN cord-000248-zueoyesj 1157 3 - - HYPH cord-000248-zueoyesj 1157 4 forming form VBG cord-000248-zueoyesj 1157 5 capacity capacity NN cord-000248-zueoyesj 1157 6 for for IN cord-000248-zueoyesj 1157 7 immortalized immortalize VBN cord-000248-zueoyesj 1157 8 melanocytes melanocyte NNS cord-000248-zueoyesj 1157 9 expressing express VBG cord-000248-zueoyesj 1157 10 melanoma melanoma NN cord-000248-zueoyesj 1157 11 growth growth NN cord-000248-zueoyesj 1157 12 stimulatory stimulatory JJ cord-000248-zueoyesj 1157 13 activity activity NN cord-000248-zueoyesj 1157 14 / / SYM cord-000248-zueoyesj 1157 15 growth growth NN cord-000248-zueoyesj 1157 16 - - HYPH cord-000248-zueoyesj 1157 17 regulated regulate VBN cord-000248-zueoyesj 1157 18 cytokine cytokine NN cord-000248-zueoyesj 1157 19 beta beta NN cord-000248-zueoyesj 1157 20 and and CC cord-000248-zueoyesj 1157 21 gamma gamma NN cord-000248-zueoyesj 1157 22 proteins protein NNS cord-000248-zueoyesj 1157 23 Expression expression NN cord-000248-zueoyesj 1157 24 and and CC cord-000248-zueoyesj 1157 25 migratory migratory JJ cord-000248-zueoyesj 1157 26 analysis analysis NN cord-000248-zueoyesj 1157 27 of of IN cord-000248-zueoyesj 1157 28 5 5 CD cord-000248-zueoyesj 1157 29 human human JJ cord-000248-zueoyesj 1157 30 uveal uveal JJ cord-000248-zueoyesj 1157 31 melanoma melanoma NN cord-000248-zueoyesj 1157 32 cell cell NN cord-000248-zueoyesj 1157 33 lines line NNS cord-000248-zueoyesj 1157 34 for for IN cord-000248-zueoyesj 1157 35 CXCL12 CXCL12 NNP cord-000248-zueoyesj 1157 36 , , , cord-000248-zueoyesj 1157 37 CXCL8 CXCL8 NNP cord-000248-zueoyesj 1157 38 , , , cord-000248-zueoyesj 1157 39 CXCL1 CXCL1 NNP cord-000248-zueoyesj 1157 40 , , , cord-000248-zueoyesj 1157 41 and and CC cord-000248-zueoyesj 1157 42 HGF HGF NNP cord-000248-zueoyesj 1157 43 Inhibition Inhibition NNP cord-000248-zueoyesj 1157 44 of of IN cord-000248-zueoyesj 1157 45 multiple multiple JJ cord-000248-zueoyesj 1157 46 vascular vascular JJ cord-000248-zueoyesj 1157 47 endothelial endothelial JJ cord-000248-zueoyesj 1157 48 growth growth NN cord-000248-zueoyesj 1157 49 factor factor NN cord-000248-zueoyesj 1157 50 receptors receptor NNS cord-000248-zueoyesj 1157 51 ( ( -LRB- cord-000248-zueoyesj 1157 52 VEGFR VEGFR NNP cord-000248-zueoyesj 1157 53 ) ) -RRB- cord-000248-zueoyesj 1158 1 blocks block NNS cord-000248-zueoyesj 1159 1 lymph lymph NNP cord-000248-zueoyesj 1159 2 node node NN cord-000248-zueoyesj 1160 1 metastases metastasis NNS cord-000248-zueoyesj 1160 2 but but CC cord-000248-zueoyesj 1161 1 inhibition inhibition NN cord-000248-zueoyesj 1161 2 of of IN cord-000248-zueoyesj 1161 3 VEGFR-2 VEGFR-2 NNP cord-000248-zueoyesj 1161 4 is be VBZ cord-000248-zueoyesj 1161 5 sufficient sufficient JJ cord-000248-zueoyesj 1161 6 to to TO cord-000248-zueoyesj 1161 7 sensitize sensitize VB cord-000248-zueoyesj 1161 8 tumor tumor NN cord-000248-zueoyesj 1161 9 cells cell NNS cord-000248-zueoyesj 1161 10 to to IN cord-000248-zueoyesj 1161 11 platinum platinum NN cord-000248-zueoyesj 1161 12 - - HYPH cord-000248-zueoyesj 1161 13 based base VBN cord-000248-zueoyesj 1161 14 chemotherapeutics chemotherapeutic NNS cord-000248-zueoyesj 1161 15 Pilot Pilot NNP cord-000248-zueoyesj 1161 16 study study NN cord-000248-zueoyesj 1161 17 on on IN cord-000248-zueoyesj 1161 18 the the DT cord-000248-zueoyesj 1161 19 interaction interaction NN cord-000248-zueoyesj 1161 20 between between IN cord-000248-zueoyesj 1161 21 B16 B16 NNP cord-000248-zueoyesj 1161 22 melanoma melanoma NN cord-000248-zueoyesj 1161 23 cell cell NN cord-000248-zueoyesj 1161 24 - - HYPH cord-000248-zueoyesj 1161 25 line line NN cord-000248-zueoyesj 1161 26 and and CC cord-000248-zueoyesj 1161 27 bone bone NN cord-000248-zueoyesj 1161 28 - - HYPH cord-000248-zueoyesj 1161 29 marrow marrow NN cord-000248-zueoyesj 1161 30 derived derive VBN cord-000248-zueoyesj 1161 31 mesenchymal mesenchymal JJ cord-000248-zueoyesj 1161 32 stem stem NN cord-000248-zueoyesj 1161 33 cells cell NNS cord-000248-zueoyesj 1162 1 Circulating circulate VBG cord-000248-zueoyesj 1162 2 serum serum NN cord-000248-zueoyesj 1162 3 levels level NNS cord-000248-zueoyesj 1162 4 of of IN cord-000248-zueoyesj 1162 5 angiogenic angiogenic JJ cord-000248-zueoyesj 1162 6 factors factor NNS cord-000248-zueoyesj 1162 7 and and CC cord-000248-zueoyesj 1162 8 vascular vascular JJ cord-000248-zueoyesj 1162 9 endothelial endothelial JJ cord-000248-zueoyesj 1162 10 growth growth NN cord-000248-zueoyesj 1162 11 factor factor NN cord-000248-zueoyesj 1162 12 receptors receptor NNS cord-000248-zueoyesj 1162 13 1 1 CD cord-000248-zueoyesj 1162 14 and and CC cord-000248-zueoyesj 1162 15 2 2 CD cord-000248-zueoyesj 1162 16 in in IN cord-000248-zueoyesj 1162 17 melanoma melanoma NN cord-000248-zueoyesj 1162 18 patients patient NNS cord-000248-zueoyesj 1162 19 Analysis Analysis NNP cord-000248-zueoyesj 1162 20 of of IN cord-000248-zueoyesj 1162 21 the the DT cord-000248-zueoyesj 1162 22 tyrosine tyrosine NN cord-000248-zueoyesj 1162 23 kinome kinome FW cord-000248-zueoyesj 1162 24 in in IN cord-000248-zueoyesj 1162 25 melanoma melanoma NN cord-000248-zueoyesj 1162 26 reveals reveal VBZ cord-000248-zueoyesj 1162 27 recurrent recurrent JJ cord-000248-zueoyesj 1162 28 mutations mutation NNS cord-000248-zueoyesj 1162 29 in in IN cord-000248-zueoyesj 1162 30 ERBB4 erbb4 NN cord-000248-zueoyesj 1163 1 The the DT cord-000248-zueoyesj 1163 2 role role NN cord-000248-zueoyesj 1163 3 of of IN cord-000248-zueoyesj 1163 4 vascular vascular JJ cord-000248-zueoyesj 1163 5 endothelial endothelial JJ cord-000248-zueoyesj 1163 6 growth growth NN cord-000248-zueoyesj 1163 7 factors factor NNS cord-000248-zueoyesj 1163 8 and and CC cord-000248-zueoyesj 1163 9 their -PRON- PRP$ cord-000248-zueoyesj 1163 10 receptors receptor NNS cord-000248-zueoyesj 1163 11 in in IN cord-000248-zueoyesj 1163 12 malignant malignant JJ cord-000248-zueoyesj 1163 13 melanomas melanoma NNS cord-000248-zueoyesj 1164 1 The the DT cord-000248-zueoyesj 1164 2 role role NN cord-000248-zueoyesj 1164 3 of of IN cord-000248-zueoyesj 1164 4 circulating circulate VBG cord-000248-zueoyesj 1164 5 angiogenic angiogenic JJ cord-000248-zueoyesj 1164 6 factors factor NNS cord-000248-zueoyesj 1164 7 in in IN cord-000248-zueoyesj 1164 8 patients patient NNS cord-000248-zueoyesj 1164 9 operated operate VBN cord-000248-zueoyesj 1164 10 on on IN cord-000248-zueoyesj 1164 11 for for IN cord-000248-zueoyesj 1164 12 localized localized JJ cord-000248-zueoyesj 1164 13 malignant malignant JJ cord-000248-zueoyesj 1164 14 melanoma melanoma NN cord-000248-zueoyesj 1164 15 Simultaneous simultaneous JJ cord-000248-zueoyesj 1164 16 blockade blockade NN cord-000248-zueoyesj 1164 17 of of IN cord-000248-zueoyesj 1164 18 VEGFR-1 vegfr-1 NN cord-000248-zueoyesj 1164 19 and and CC cord-000248-zueoyesj 1164 20 VEGFR-2 vegfr-2 NN cord-000248-zueoyesj 1164 21 activation activation NN cord-000248-zueoyesj 1164 22 is be VBZ cord-000248-zueoyesj 1164 23 necessary necessary JJ cord-000248-zueoyesj 1164 24 to to TO cord-000248-zueoyesj 1164 25 efficiently efficiently RB cord-000248-zueoyesj 1164 26 inhibit inhibit VB cord-000248-zueoyesj 1164 27 experimental experimental JJ cord-000248-zueoyesj 1164 28 melanoma melanoma NN cord-000248-zueoyesj 1164 29 growth growth NN cord-000248-zueoyesj 1164 30 and and CC cord-000248-zueoyesj 1164 31 metastasis metastasis NN cord-000248-zueoyesj 1164 32 formation formation NN cord-000248-zueoyesj 1164 33 Flt-1 Flt-1 NNP cord-000248-zueoyesj 1165 1 intraceptor intraceptor NNP cord-000248-zueoyesj 1165 2 induces induce VBZ cord-000248-zueoyesj 1165 3 the the DT cord-000248-zueoyesj 1165 4 unfolded unfolded JJ cord-000248-zueoyesj 1165 5 protein protein NN cord-000248-zueoyesj 1165 6 response response NN cord-000248-zueoyesj 1165 7 , , , cord-000248-zueoyesj 1165 8 apoptotic apoptotic JJ cord-000248-zueoyesj 1165 9 factors factor NNS cord-000248-zueoyesj 1165 10 , , , cord-000248-zueoyesj 1165 11 and and CC cord-000248-zueoyesj 1165 12 regression regression NN cord-000248-zueoyesj 1165 13 of of IN cord-000248-zueoyesj 1165 14 murine murine JJ cord-000248-zueoyesj 1165 15 injury injury NN cord-000248-zueoyesj 1165 16 - - HYPH cord-000248-zueoyesj 1165 17 induced induce VBN cord-000248-zueoyesj 1165 18 corneal corneal JJ cord-000248-zueoyesj 1165 19 neovascularization neovascularization NN cord-000248-zueoyesj 1166 1 An an DT cord-000248-zueoyesj 1166 2 autocrine autocrine JJ cord-000248-zueoyesj 1166 3 loop loop NN cord-000248-zueoyesj 1166 4 directed direct VBN cord-000248-zueoyesj 1166 5 by by IN cord-000248-zueoyesj 1166 6 the the DT cord-000248-zueoyesj 1166 7 vascular vascular JJ cord-000248-zueoyesj 1166 8 endothelial endothelial JJ cord-000248-zueoyesj 1166 9 growth growth NN cord-000248-zueoyesj 1166 10 factor factor NN cord-000248-zueoyesj 1166 11 promotes promote VBZ cord-000248-zueoyesj 1166 12 invasiveness invasiveness NN cord-000248-zueoyesj 1166 13 of of IN cord-000248-zueoyesj 1166 14 human human JJ cord-000248-zueoyesj 1166 15 melanoma melanoma NN cord-000248-zueoyesj 1166 16 cells cell NNS cord-000248-zueoyesj 1167 1 Overproduction overproduction NN cord-000248-zueoyesj 1167 2 of of IN cord-000248-zueoyesj 1167 3 VEGF VEGF NNP cord-000248-zueoyesj 1167 4 concomitantly concomitantly RB cord-000248-zueoyesj 1167 5 expressed express VBD cord-000248-zueoyesj 1167 6 with with IN cord-000248-zueoyesj 1167 7 its -PRON- PRP$ cord-000248-zueoyesj 1167 8 receptors receptor NNS cord-000248-zueoyesj 1167 9 promotes promote VBZ cord-000248-zueoyesj 1167 10 growth growth NN cord-000248-zueoyesj 1167 11 and and CC cord-000248-zueoyesj 1167 12 survival survival NN cord-000248-zueoyesj 1167 13 of of IN cord-000248-zueoyesj 1167 14 melanoma melanoma NN cord-000248-zueoyesj 1167 15 cells cell NNS cord-000248-zueoyesj 1167 16 through through IN cord-000248-zueoyesj 1167 17 MAPK MAPK NNP cord-000248-zueoyesj 1167 18 and and CC cord-000248-zueoyesj 1167 19 PI3 PI3 NNP cord-000248-zueoyesj 1167 20 K K NNP cord-000248-zueoyesj 1167 21 signaling signal VBG cord-000248-zueoyesj 1167 22 MMP9 MMP9 NNP cord-000248-zueoyesj 1167 23 induction induction NN cord-000248-zueoyesj 1167 24 by by IN cord-000248-zueoyesj 1167 25 vascular vascular JJ cord-000248-zueoyesj 1167 26 endothelial endothelial JJ cord-000248-zueoyesj 1167 27 growth growth NN cord-000248-zueoyesj 1167 28 factor factor NN cord-000248-zueoyesj 1168 1 receptor-1 receptor-1 NNP cord-000248-zueoyesj 1168 2 is be VBZ cord-000248-zueoyesj 1168 3 involved involve VBN cord-000248-zueoyesj 1168 4 in in IN cord-000248-zueoyesj 1168 5 lungspecific lungspecific JJ cord-000248-zueoyesj 1168 6 metastasis metastasis NN cord-000248-zueoyesj 1168 7 Release release NN cord-000248-zueoyesj 1168 8 and and CC cord-000248-zueoyesj 1168 9 complex complex JJ cord-000248-zueoyesj 1168 10 formation formation NN cord-000248-zueoyesj 1168 11 of of IN cord-000248-zueoyesj 1168 12 soluble soluble JJ cord-000248-zueoyesj 1168 13 VEGFR-1 VEGFR-1 NNS cord-000248-zueoyesj 1168 14 from from IN cord-000248-zueoyesj 1168 15 endothelial endothelial JJ cord-000248-zueoyesj 1168 16 cells cell NNS cord-000248-zueoyesj 1168 17 and and CC cord-000248-zueoyesj 1168 18 biological biological JJ cord-000248-zueoyesj 1168 19 fluids fluid NNS cord-000248-zueoyesj 1169 1 Angiogenesis angiogenesis NN cord-000248-zueoyesj 1169 2 and and CC cord-000248-zueoyesj 1169 3 vascular vascular JJ cord-000248-zueoyesj 1169 4 growth growth NN cord-000248-zueoyesj 1169 5 factor factor NN cord-000248-zueoyesj 1169 6 receptor receptor NN cord-000248-zueoyesj 1169 7 expression expression NN cord-000248-zueoyesj 1169 8 in in IN cord-000248-zueoyesj 1169 9 malignant malignant JJ cord-000248-zueoyesj 1169 10 melanoma melanoma NN cord-000248-zueoyesj 1169 11 Association Association NNP cord-000248-zueoyesj 1169 12 of of IN cord-000248-zueoyesj 1169 13 increased increase VBN cord-000248-zueoyesj 1169 14 levels level NNS cord-000248-zueoyesj 1169 15 of of IN cord-000248-zueoyesj 1169 16 heavychain heavychain NN cord-000248-zueoyesj 1169 17 ferritin ferritin NN cord-000248-zueoyesj 1169 18 with with IN cord-000248-zueoyesj 1169 19 increased increase VBN cord-000248-zueoyesj 1169 20 CD4 CD4 NNP cord-000248-zueoyesj 1169 21 + + CC cord-000248-zueoyesj 1169 22 CD25 CD25 NNP cord-000248-zueoyesj 1169 23 + + CC cord-000248-zueoyesj 1169 24 regulatory regulatory JJ cord-000248-zueoyesj 1169 25 T t NN cord-000248-zueoyesj 1169 26 - - HYPH cord-000248-zueoyesj 1169 27 cell cell NN cord-000248-zueoyesj 1169 28 levels level NNS cord-000248-zueoyesj 1169 29 in in IN cord-000248-zueoyesj 1169 30 patients patient NNS cord-000248-zueoyesj 1169 31 with with IN cord-000248-zueoyesj 1170 1 melanoma melanoma NN cord-000248-zueoyesj 1170 2 Heavy Heavy NNP cord-000248-zueoyesj 1170 3 chain chain NN cord-000248-zueoyesj 1170 4 ferritin ferritin NN cord-000248-zueoyesj 1170 5 activates activate VBZ cord-000248-zueoyesj 1170 6 regulatory regulatory JJ cord-000248-zueoyesj 1170 7 T t NN cord-000248-zueoyesj 1170 8 cells cell NNS cord-000248-zueoyesj 1170 9 by by IN cord-000248-zueoyesj 1170 10 induction induction NN cord-000248-zueoyesj 1170 11 of of IN cord-000248-zueoyesj 1170 12 changes change NNS cord-000248-zueoyesj 1170 13 in in IN cord-000248-zueoyesj 1170 14 dendritic dendritic JJ cord-000248-zueoyesj 1170 15 cells cell NNS cord-000248-zueoyesj 1170 16 Immunosuppressive immunosuppressive JJ cord-000248-zueoyesj 1170 17 effects effect NNS cord-000248-zueoyesj 1170 18 of of IN cord-000248-zueoyesj 1170 19 melanoma melanoma NN cord-000248-zueoyesj 1170 20 - - HYPH cord-000248-zueoyesj 1170 21 derived derive VBN cord-000248-zueoyesj 1170 22 heavy heavy JJ cord-000248-zueoyesj 1170 23 - - HYPH cord-000248-zueoyesj 1170 24 chain chain NN cord-000248-zueoyesj 1170 25 ferritin ferritin NN cord-000248-zueoyesj 1170 26 are be VBP cord-000248-zueoyesj 1170 27 dependent dependent JJ cord-000248-zueoyesj 1170 28 on on IN cord-000248-zueoyesj 1170 29 stimulation stimulation NN cord-000248-zueoyesj 1170 30 of of IN cord-000248-zueoyesj 1170 31 IL-10 IL-10 NNP cord-000248-zueoyesj 1170 32 production production NN cord-000248-zueoyesj 1170 33 Ferritin ferritin NN cord-000248-zueoyesj 1170 34 heavy heavy JJ cord-000248-zueoyesj 1170 35 chain chain NN cord-000248-zueoyesj 1170 36 upregulation upregulation NN cord-000248-zueoyesj 1170 37 by by IN cord-000248-zueoyesj 1170 38 NF NF NNP cord-000248-zueoyesj 1170 39 - - HYPH cord-000248-zueoyesj 1170 40 kappaB kappaB NNP cord-000248-zueoyesj 1170 41 inhibits inhibit VBZ cord-000248-zueoyesj 1170 42 TNFalpha tnfalpha NN cord-000248-zueoyesj 1170 43 - - HYPH cord-000248-zueoyesj 1170 44 induced induce VBN cord-000248-zueoyesj 1170 45 apoptosis apoptosis NN cord-000248-zueoyesj 1170 46 by by IN cord-000248-zueoyesj 1170 47 suppressing suppress VBG cord-000248-zueoyesj 1170 48 reactive reactive JJ cord-000248-zueoyesj 1170 49 oxygen oxygen NN cord-000248-zueoyesj 1170 50 species specie NNS cord-000248-zueoyesj 1170 51 Sealing sealing NN cord-000248-zueoyesj 1170 52 of of IN cord-000248-zueoyesj 1170 53 chromosomal chromosomal JJ cord-000248-zueoyesj 1170 54 DNA dna NN cord-000248-zueoyesj 1170 55 nicks nick NNS cord-000248-zueoyesj 1170 56 during during IN cord-000248-zueoyesj 1170 57 nucleotide nucleotide JJ cord-000248-zueoyesj 1170 58 excision excision NN cord-000248-zueoyesj 1170 59 repair repair NN cord-000248-zueoyesj 1170 60 requires require VBZ cord-000248-zueoyesj 1170 61 XRCC1 XRCC1 NNS cord-000248-zueoyesj 1170 62 and and CC cord-000248-zueoyesj 1170 63 DNA dna NN cord-000248-zueoyesj 1170 64 ligase ligase NN cord-000248-zueoyesj 1170 65 III iii CD cord-000248-zueoyesj 1170 66 alpha alpha NN cord-000248-zueoyesj 1170 67 in in IN cord-000248-zueoyesj 1170 68 a a DT cord-000248-zueoyesj 1170 69 cell cell NN cord-000248-zueoyesj 1170 70 - - HYPH cord-000248-zueoyesj 1170 71 cycle cycle NN cord-000248-zueoyesj 1170 72 - - HYPH cord-000248-zueoyesj 1170 73 specific specific JJ cord-000248-zueoyesj 1170 74 manner manner JJ cord-000248-zueoyesj 1170 75 Gene gene NN cord-000248-zueoyesj 1170 76 expression expression NN cord-000248-zueoyesj 1170 77 profiles profile NNS cord-000248-zueoyesj 1170 78 in in IN cord-000248-zueoyesj 1170 79 radiation radiation NN cord-000248-zueoyesj 1170 80 workers worker NNS cord-000248-zueoyesj 1170 81 occupationally occupationally RB cord-000248-zueoyesj 1170 82 exposed expose VBN cord-000248-zueoyesj 1170 83 to to IN cord-000248-zueoyesj 1170 84 ionizing ionize VBG cord-000248-zueoyesj 1170 85 radiation radiation NN cord-000248-zueoyesj 1170 86 Human human JJ cord-000248-zueoyesj 1170 87 melanoma melanoma NN cord-000248-zueoyesj 1170 88 cells cell NNS cord-000248-zueoyesj 1170 89 secrete secrete VBP cord-000248-zueoyesj 1170 90 and and CC cord-000248-zueoyesj 1170 91 respond respond VBP cord-000248-zueoyesj 1170 92 to to IN cord-000248-zueoyesj 1170 93 placenta placenta NN cord-000248-zueoyesj 1170 94 growth growth NN cord-000248-zueoyesj 1170 95 factor factor NN cord-000248-zueoyesj 1170 96 and and CC cord-000248-zueoyesj 1170 97 vascular vascular JJ cord-000248-zueoyesj 1170 98 endothelial endothelial JJ cord-000248-zueoyesj 1170 99 growth growth NN cord-000248-zueoyesj 1170 100 factor factor NN cord-000248-zueoyesj 1170 101 Expression expression NN cord-000248-zueoyesj 1170 102 patterns pattern NNS cord-000248-zueoyesj 1170 103 of of IN cord-000248-zueoyesj 1170 104 placenta placenta NN cord-000248-zueoyesj 1170 105 growth growth NN cord-000248-zueoyesj 1170 106 factor factor NN cord-000248-zueoyesj 1170 107 in in IN cord-000248-zueoyesj 1171 1 human human JJ cord-000248-zueoyesj 1171 2 melanocytic melanocytic JJ cord-000248-zueoyesj 1171 3 cell cell NN cord-000248-zueoyesj 1171 4 lines line NNS cord-000248-zueoyesj 1171 5 Neuropilins Neuropilins NNP cord-000248-zueoyesj 1171 6 in in IN cord-000248-zueoyesj 1171 7 tumor tumor NN cord-000248-zueoyesj 1171 8 biology biology NN cord-000248-zueoyesj 1171 9 Semaphorin Semaphorin NNP cord-000248-zueoyesj 1171 10 signaling signal VBG cord-000248-zueoyesj 1171 11 in in IN cord-000248-zueoyesj 1171 12 cancer cancer NN cord-000248-zueoyesj 1171 13 cells cell NNS cord-000248-zueoyesj 1171 14 and and CC cord-000248-zueoyesj 1171 15 in in IN cord-000248-zueoyesj 1171 16 cells cell NNS cord-000248-zueoyesj 1171 17 of of IN cord-000248-zueoyesj 1171 18 the the DT cord-000248-zueoyesj 1171 19 tumor tumor NN cord-000248-zueoyesj 1171 20 microenvironment microenvironment NN cord-000248-zueoyesj 1171 21 - - HYPH cord-000248-zueoyesj 1171 22 two two CD cord-000248-zueoyesj 1171 23 sides side NNS cord-000248-zueoyesj 1171 24 of of IN cord-000248-zueoyesj 1171 25 a a DT cord-000248-zueoyesj 1171 26 coin coin NN cord-000248-zueoyesj 1171 27 From from IN cord-000248-zueoyesj 1171 28 plasma plasma NN cord-000248-zueoyesj 1171 29 membrane membrane NN cord-000248-zueoyesj 1171 30 to to IN cord-000248-zueoyesj 1171 31 cytoskeleton cytoskeleton NN cord-000248-zueoyesj 1171 32 : : : cord-000248-zueoyesj 1171 33 a a DT cord-000248-zueoyesj 1171 34 novel novel JJ cord-000248-zueoyesj 1171 35 function function NN cord-000248-zueoyesj 1171 36 for for IN cord-000248-zueoyesj 1171 37 semaphorin semaphorin NNP cord-000248-zueoyesj 1171 38 6A 6A NNP cord-000248-zueoyesj 1171 39 Semaphorins Semaphorins NNP cord-000248-zueoyesj 1171 40 at at IN cord-000248-zueoyesj 1171 41 the the DT cord-000248-zueoyesj 1171 42 interface interface NN cord-000248-zueoyesj 1171 43 of of IN cord-000248-zueoyesj 1171 44 development development NN cord-000248-zueoyesj 1171 45 and and CC cord-000248-zueoyesj 1171 46 cancer cancer NN cord-000248-zueoyesj 1171 47 Comparative Comparative NNP cord-000248-zueoyesj 1171 48 integromics integromic NNS cord-000248-zueoyesj 1171 49 on on IN cord-000248-zueoyesj 1171 50 non non JJ cord-000248-zueoyesj 1171 51 - - JJ cord-000248-zueoyesj 1171 52 canonical canonical JJ cord-000248-zueoyesj 1171 53 WNT wnt NN cord-000248-zueoyesj 1171 54 or or CC cord-000248-zueoyesj 1171 55 planar planar JJ cord-000248-zueoyesj 1171 56 cell cell NN cord-000248-zueoyesj 1171 57 polarity polarity NN cord-000248-zueoyesj 1171 58 signaling signal VBG cord-000248-zueoyesj 1171 59 molecules molecule NNS cord-000248-zueoyesj 1171 60 : : : cord-000248-zueoyesj 1171 61 transcriptional transcriptional JJ cord-000248-zueoyesj 1171 62 mechanism mechanism NN cord-000248-zueoyesj 1171 63 of of IN cord-000248-zueoyesj 1171 64 PTK7 PTK7 NNP cord-000248-zueoyesj 1171 65 in in IN cord-000248-zueoyesj 1171 66 colorectal colorectal JJ cord-000248-zueoyesj 1171 67 cancer cancer NN cord-000248-zueoyesj 1171 68 and and CC cord-000248-zueoyesj 1171 69 that that DT cord-000248-zueoyesj 1171 70 of of IN cord-000248-zueoyesj 1171 71 SEMA6A SEMA6A NNP cord-000248-zueoyesj 1171 72 in in IN cord-000248-zueoyesj 1171 73 undifferentiated undifferentiated JJ cord-000248-zueoyesj 1171 74 ES es NN cord-000248-zueoyesj 1171 75 cells cell NNS cord-000248-zueoyesj 1171 76 Deciphering decipher VBG cord-000248-zueoyesj 1171 77 developmental developmental JJ cord-000248-zueoyesj 1171 78 stages stage NNS cord-000248-zueoyesj 1171 79 of of IN cord-000248-zueoyesj 1171 80 adult adult NN cord-000248-zueoyesj 1171 81 myelopoiesis myelopoiesis NNP cord-000248-zueoyesj 1171 82 Downregulation Downregulation NNP cord-000248-zueoyesj 1171 83 of of IN cord-000248-zueoyesj 1171 84 CCN3 CCN3 NNP cord-000248-zueoyesj 1171 85 expression expression NN cord-000248-zueoyesj 1171 86 as as IN cord-000248-zueoyesj 1171 87 a a DT cord-000248-zueoyesj 1171 88 potential potential JJ cord-000248-zueoyesj 1171 89 mechanism mechanism NN cord-000248-zueoyesj 1171 90 for for IN cord-000248-zueoyesj 1171 91 melanoma melanoma NN cord-000248-zueoyesj 1171 92 progression progression NN cord-000248-zueoyesj 1172 1 Osteopontin osteopontin JJ cord-000248-zueoyesj 1172 2 expression expression NN cord-000248-zueoyesj 1172 3 in in IN cord-000248-zueoyesj 1172 4 normal normal JJ cord-000248-zueoyesj 1172 5 skin skin NN cord-000248-zueoyesj 1172 6 and and CC cord-000248-zueoyesj 1172 7 non non JJ cord-000248-zueoyesj 1172 8 - - JJ cord-000248-zueoyesj 1172 9 melanoma melanoma JJ cord-000248-zueoyesj 1172 10 skin skin NN cord-000248-zueoyesj 1172 11 tumors tumor NNS cord-000248-zueoyesj 1173 1 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1173 2 stimulates stimulate VBZ cord-000248-zueoyesj 1173 3 melanoma melanoma NN cord-000248-zueoyesj 1173 4 growth growth NN cord-000248-zueoyesj 1173 5 and and CC cord-000248-zueoyesj 1173 6 lung lung NN cord-000248-zueoyesj 1173 7 metastasis metastasis NN cord-000248-zueoyesj 1173 8 through through IN cord-000248-zueoyesj 1173 9 NIK NIK NNP cord-000248-zueoyesj 1173 10 / / SYM cord-000248-zueoyesj 1173 11 MEKK1-dependent MEKK1-dependent NNP cord-000248-zueoyesj 1173 12 MMP-9 MMP-9 NNP cord-000248-zueoyesj 1173 13 activation activation NN cord-000248-zueoyesj 1173 14 pathways pathway NNS cord-000248-zueoyesj 1173 15 Osteonectin Osteonectin NNP cord-000248-zueoyesj 1173 16 downregulates downregulate VBZ cord-000248-zueoyesj 1173 17 Ecadherin Ecadherin NNP cord-000248-zueoyesj 1173 18 , , , cord-000248-zueoyesj 1173 19 induces induce VBZ cord-000248-zueoyesj 1173 20 osteopontin osteopontin JJ cord-000248-zueoyesj 1173 21 and and CC cord-000248-zueoyesj 1173 22 focal focal JJ cord-000248-zueoyesj 1173 23 adhesion adhesion NN cord-000248-zueoyesj 1173 24 kinase kinase NN cord-000248-zueoyesj 1173 25 activity activity NN cord-000248-zueoyesj 1173 26 stimulating stimulate VBG cord-000248-zueoyesj 1173 27 an an DT cord-000248-zueoyesj 1173 28 invasive invasive JJ cord-000248-zueoyesj 1173 29 melanoma melanoma NN cord-000248-zueoyesj 1173 30 phenotype phenotype NN cord-000248-zueoyesj 1173 31 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1173 32 expression expression NN cord-000248-zueoyesj 1173 33 in in IN cord-000248-zueoyesj 1173 34 Spitz Spitz NNP cord-000248-zueoyesj 1173 35 nevi nevus NNS cord-000248-zueoyesj 1173 36 Serum serum NN cord-000248-zueoyesj 1173 37 markers marker NNS cord-000248-zueoyesj 1173 38 to to TO cord-000248-zueoyesj 1173 39 detect detect VB cord-000248-zueoyesj 1173 40 metastatic metastatic JJ cord-000248-zueoyesj 1173 41 uveal uveal JJ cord-000248-zueoyesj 1173 42 melanoma melanoma NN cord-000248-zueoyesj 1173 43 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1173 44 and and CC cord-000248-zueoyesj 1173 45 the the DT cord-000248-zueoyesj 1173 46 skin skin NN cord-000248-zueoyesj 1173 47 : : : cord-000248-zueoyesj 1173 48 multiple multiple JJ cord-000248-zueoyesj 1173 49 emerging emerge VBG cord-000248-zueoyesj 1173 50 roles role NNS cord-000248-zueoyesj 1173 51 in in IN cord-000248-zueoyesj 1173 52 cutaneous cutaneous JJ cord-000248-zueoyesj 1173 53 biology biology NN cord-000248-zueoyesj 1173 54 and and CC cord-000248-zueoyesj 1173 55 pathology pathology NN cord-000248-zueoyesj 1174 1 The the DT cord-000248-zueoyesj 1174 2 Hedgehog Hedgehog NNP cord-000248-zueoyesj 1174 3 Pathway Pathway NNP cord-000248-zueoyesj 1174 4 Transcription Transcription NNP cord-000248-zueoyesj 1174 5 Factor Factor NNP cord-000248-zueoyesj 1174 6 GLI1 GLI1 NNP cord-000248-zueoyesj 1174 7 Promotes promote VBZ cord-000248-zueoyesj 1174 8 Malignant malignant JJ cord-000248-zueoyesj 1174 9 Behavior Behavior NNP cord-000248-zueoyesj 1174 10 of of IN cord-000248-zueoyesj 1174 11 Cancer Cancer NNP cord-000248-zueoyesj 1174 12 Cells cell NNS cord-000248-zueoyesj 1174 13 by by IN cord-000248-zueoyesj 1174 14 Up up IN cord-000248-zueoyesj 1174 15 - - HYPH cord-000248-zueoyesj 1174 16 regulating regulate VBG cord-000248-zueoyesj 1174 17 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1174 18 Expression expression NN cord-000248-zueoyesj 1174 19 of of IN cord-000248-zueoyesj 1174 20 phosphorylated phosphorylate VBN cord-000248-zueoyesj 1174 21 - - HYPH cord-000248-zueoyesj 1174 22 STAT3 STAT3 NNP cord-000248-zueoyesj 1174 23 and and CC cord-000248-zueoyesj 1174 24 osteopontin osteopontin NNP cord-000248-zueoyesj 1174 25 and and CC cord-000248-zueoyesj 1174 26 their -PRON- PRP$ cord-000248-zueoyesj 1174 27 correlation correlation NN cord-000248-zueoyesj 1174 28 in in IN cord-000248-zueoyesj 1174 29 melanoma melanoma NN cord-000248-zueoyesj 1174 30 Matricellular Matricellular NNP cord-000248-zueoyesj 1174 31 proteins protein NNS cord-000248-zueoyesj 1174 32 produced produce VBN cord-000248-zueoyesj 1174 33 by by IN cord-000248-zueoyesj 1174 34 melanocytes melanocyte NNS cord-000248-zueoyesj 1174 35 and and CC cord-000248-zueoyesj 1174 36 melanomas melanoma NNS cord-000248-zueoyesj 1174 37 : : : cord-000248-zueoyesj 1175 1 in in IN cord-000248-zueoyesj 1175 2 search search NN cord-000248-zueoyesj 1175 3 for for IN cord-000248-zueoyesj 1175 4 functions function NNS cord-000248-zueoyesj 1175 5 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1175 6 and and CC cord-000248-zueoyesj 1175 7 ' ' `` cord-000248-zueoyesj 1175 8 melanoma melanoma NN cord-000248-zueoyesj 1175 9 inhibitory inhibitory JJ cord-000248-zueoyesj 1175 10 activity activity NN cord-000248-zueoyesj 1175 11 ' ' '' cord-000248-zueoyesj 1175 12 : : : cord-000248-zueoyesj 1175 13 comparison comparison NN cord-000248-zueoyesj 1175 14 of of IN cord-000248-zueoyesj 1175 15 two two CD cord-000248-zueoyesj 1175 16 serological serological JJ cord-000248-zueoyesj 1175 17 tumor tumor NN cord-000248-zueoyesj 1175 18 markers marker NNS cord-000248-zueoyesj 1175 19 in in IN cord-000248-zueoyesj 1175 20 metastatic metastatic JJ cord-000248-zueoyesj 1175 21 uveal uveal JJ cord-000248-zueoyesj 1175 22 melanoma melanoma NN cord-000248-zueoyesj 1175 23 patients patient NNS cord-000248-zueoyesj 1175 24 Extracellular Extracellular NNP cord-000248-zueoyesj 1175 25 and and CC cord-000248-zueoyesj 1175 26 intracellular intracellular JJ cord-000248-zueoyesj 1175 27 mechanisms mechanism NNS cord-000248-zueoyesj 1175 28 that that WDT cord-000248-zueoyesj 1175 29 mediate mediate VBP cord-000248-zueoyesj 1175 30 the the DT cord-000248-zueoyesj 1175 31 metastatic metastatic JJ cord-000248-zueoyesj 1175 32 activity activity NN cord-000248-zueoyesj 1175 33 of of IN cord-000248-zueoyesj 1175 34 exogenous exogenous JJ cord-000248-zueoyesj 1175 35 osteopontin osteopontin NNP cord-000248-zueoyesj 1175 36 Endothelin Endothelin NNP cord-000248-zueoyesj 1175 37 signaling signaling NN cord-000248-zueoyesj 1175 38 axis axis NN cord-000248-zueoyesj 1175 39 activates activate VBZ cord-000248-zueoyesj 1175 40 osteopontin osteopontin JJ cord-000248-zueoyesj 1175 41 expression expression NN cord-000248-zueoyesj 1175 42 through through IN cord-000248-zueoyesj 1175 43 PI3 pi3 NN cord-000248-zueoyesj 1175 44 kinase kinase NN cord-000248-zueoyesj 1175 45 pathway pathway NN cord-000248-zueoyesj 1175 46 in in IN cord-000248-zueoyesj 1175 47 A375 A375 NNP cord-000248-zueoyesj 1175 48 melanoma melanoma NN cord-000248-zueoyesj 1175 49 cells cell NNS cord-000248-zueoyesj 1176 1 A a DT cord-000248-zueoyesj 1176 2 highthroughput highthroughput NN cord-000248-zueoyesj 1176 3 study study NN cord-000248-zueoyesj 1176 4 in in IN cord-000248-zueoyesj 1176 5 melanoma melanoma NN cord-000248-zueoyesj 1176 6 identifies identify VBZ cord-000248-zueoyesj 1176 7 epithelial epithelial JJ cord-000248-zueoyesj 1176 8 - - HYPH cord-000248-zueoyesj 1176 9 mesenchymal mesenchymal JJ cord-000248-zueoyesj 1176 10 transition transition NN cord-000248-zueoyesj 1176 11 as as IN cord-000248-zueoyesj 1176 12 a a DT cord-000248-zueoyesj 1176 13 major major JJ cord-000248-zueoyesj 1176 14 determinant determinant NN cord-000248-zueoyesj 1176 15 of of IN cord-000248-zueoyesj 1176 16 metastasis metastasis NN cord-000248-zueoyesj 1176 17 Serum serum NN cord-000248-zueoyesj 1176 18 osteopontin osteopontin NNP cord-000248-zueoyesj 1176 19 , , , cord-000248-zueoyesj 1176 20 an an DT cord-000248-zueoyesj 1176 21 enhancer enhancer NN cord-000248-zueoyesj 1176 22 of of IN cord-000248-zueoyesj 1176 23 tumor tumor NN cord-000248-zueoyesj 1176 24 metastasis metastasis NN cord-000248-zueoyesj 1176 25 to to IN cord-000248-zueoyesj 1176 26 bone bone NN cord-000248-zueoyesj 1176 27 , , , cord-000248-zueoyesj 1176 28 promotes promote VBZ cord-000248-zueoyesj 1176 29 B16 b16 NN cord-000248-zueoyesj 1176 30 melanoma melanoma NN cord-000248-zueoyesj 1176 31 cell cell NN cord-000248-zueoyesj 1176 32 migration migration NN cord-000248-zueoyesj 1176 33 Gene gene NN cord-000248-zueoyesj 1176 34 - - HYPH cord-000248-zueoyesj 1176 35 specific specific JJ cord-000248-zueoyesj 1176 36 fluorescence fluorescence NN cord-000248-zueoyesj 1176 37 in in IN cord-000248-zueoyesj 1176 38 - - HYPH cord-000248-zueoyesj 1176 39 situ situ NN cord-000248-zueoyesj 1176 40 hybridization hybridization NN cord-000248-zueoyesj 1176 41 analysis analysis NN cord-000248-zueoyesj 1176 42 on on IN cord-000248-zueoyesj 1176 43 tissue tissue NN cord-000248-zueoyesj 1176 44 microarray microarray NN cord-000248-zueoyesj 1176 45 to to TO cord-000248-zueoyesj 1176 46 refine refine VB cord-000248-zueoyesj 1176 47 the the DT cord-000248-zueoyesj 1176 48 region region NN cord-000248-zueoyesj 1176 49 of of IN cord-000248-zueoyesj 1176 50 chromosome chromosome NN cord-000248-zueoyesj 1176 51 20q 20q NNS cord-000248-zueoyesj 1176 52 amplification amplification NN cord-000248-zueoyesj 1176 53 in in IN cord-000248-zueoyesj 1176 54 melanoma melanoma NN cord-000248-zueoyesj 1176 55 Identification identification NN cord-000248-zueoyesj 1176 56 of of IN cord-000248-zueoyesj 1176 57 proteins protein NNS cord-000248-zueoyesj 1176 58 regulated regulate VBN cord-000248-zueoyesj 1176 59 by by IN cord-000248-zueoyesj 1176 60 interferon interferon NN cord-000248-zueoyesj 1176 61 - - HYPH cord-000248-zueoyesj 1176 62 alpha alpha NN cord-000248-zueoyesj 1176 63 in in IN cord-000248-zueoyesj 1176 64 resistant resistant JJ cord-000248-zueoyesj 1176 65 and and CC cord-000248-zueoyesj 1176 66 sensitive sensitive JJ cord-000248-zueoyesj 1176 67 malignant malignant JJ cord-000248-zueoyesj 1176 68 melanoma melanoma NN cord-000248-zueoyesj 1176 69 cell cell NN cord-000248-zueoyesj 1176 70 lines line NNS cord-000248-zueoyesj 1177 1 A a DT cord-000248-zueoyesj 1177 2 molecular molecular JJ cord-000248-zueoyesj 1177 3 correlate correlate VBP cord-000248-zueoyesj 1177 4 to to IN cord-000248-zueoyesj 1177 5 the the DT cord-000248-zueoyesj 1177 6 Gleason Gleason NNP cord-000248-zueoyesj 1177 7 grading grading NN cord-000248-zueoyesj 1177 8 system system NN cord-000248-zueoyesj 1177 9 for for IN cord-000248-zueoyesj 1177 10 prostate prostate NN cord-000248-zueoyesj 1177 11 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1177 12 Ink4c Ink4c NNP cord-000248-zueoyesj 1177 13 and and CC cord-000248-zueoyesj 1177 14 Pten Pten NNP cord-000248-zueoyesj 1177 15 constrain constrain VBP cord-000248-zueoyesj 1177 16 a a DT cord-000248-zueoyesj 1177 17 positive positive JJ cord-000248-zueoyesj 1177 18 regulatory regulatory JJ cord-000248-zueoyesj 1177 19 loop loop NN cord-000248-zueoyesj 1177 20 between between IN cord-000248-zueoyesj 1177 21 cell cell NN cord-000248-zueoyesj 1177 22 growth growth NN cord-000248-zueoyesj 1177 23 and and CC cord-000248-zueoyesj 1177 24 cell cell NN cord-000248-zueoyesj 1177 25 cycle cycle NN cord-000248-zueoyesj 1177 26 control control NN cord-000248-zueoyesj 1177 27 Survey Survey NNP cord-000248-zueoyesj 1177 28 of of IN cord-000248-zueoyesj 1177 29 differentially differentially RB cord-000248-zueoyesj 1177 30 methylated methylate VBN cord-000248-zueoyesj 1177 31 promoters promoter NNS cord-000248-zueoyesj 1177 32 in in IN cord-000248-zueoyesj 1177 33 prostate prostate NN cord-000248-zueoyesj 1177 34 cancer cancer NN cord-000248-zueoyesj 1177 35 cell cell NN cord-000248-zueoyesj 1177 36 lines line NNS cord-000248-zueoyesj 1177 37 Transfer Transfer NNP cord-000248-zueoyesj 1177 38 of of IN cord-000248-zueoyesj 1177 39 functional functional JJ cord-000248-zueoyesj 1177 40 prostasomal prostasomal JJ cord-000248-zueoyesj 1177 41 CD59 CD59 NNP cord-000248-zueoyesj 1177 42 of of IN cord-000248-zueoyesj 1177 43 metastatic metastatic JJ cord-000248-zueoyesj 1177 44 prostatic prostatic JJ cord-000248-zueoyesj 1177 45 cancer cancer NN cord-000248-zueoyesj 1177 46 cell cell NN cord-000248-zueoyesj 1177 47 origin origin NN cord-000248-zueoyesj 1177 48 protects protect VBZ cord-000248-zueoyesj 1177 49 cells cell NNS cord-000248-zueoyesj 1177 50 against against IN cord-000248-zueoyesj 1177 51 complement complement JJ cord-000248-zueoyesj 1177 52 attack attack NN cord-000248-zueoyesj 1177 53 Differentially differentially RB cord-000248-zueoyesj 1177 54 expressed express VBD cord-000248-zueoyesj 1177 55 genes gene NNS cord-000248-zueoyesj 1177 56 in in IN cord-000248-zueoyesj 1177 57 two two CD cord-000248-zueoyesj 1177 58 LNCaP lncap NN cord-000248-zueoyesj 1177 59 prostate prostate NN cord-000248-zueoyesj 1177 60 cancer cancer NN cord-000248-zueoyesj 1177 61 cell cell NN cord-000248-zueoyesj 1177 62 lines line NNS cord-000248-zueoyesj 1177 63 reflecting reflect VBG cord-000248-zueoyesj 1177 64 changes change NNS cord-000248-zueoyesj 1177 65 during during IN cord-000248-zueoyesj 1177 66 prostate prostate NN cord-000248-zueoyesj 1177 67 cancer cancer NN cord-000248-zueoyesj 1177 68 progression progression NN cord-000248-zueoyesj 1177 69 Amine amine NN cord-000248-zueoyesj 1177 70 oxidase oxidase NN cord-000248-zueoyesj 1177 71 activities activity NNS cord-000248-zueoyesj 1177 72 in in IN cord-000248-zueoyesj 1177 73 chemically chemically RB cord-000248-zueoyesj 1177 74 - - HYPH cord-000248-zueoyesj 1177 75 induced induce VBN cord-000248-zueoyesj 1177 76 mammary mammary JJ cord-000248-zueoyesj 1177 77 cancer cancer NN cord-000248-zueoyesj 1177 78 in in IN cord-000248-zueoyesj 1177 79 the the DT cord-000248-zueoyesj 1177 80 rat rat NN cord-000248-zueoyesj 1178 1 The the DT cord-000248-zueoyesj 1178 2 significance significance NN cord-000248-zueoyesj 1178 3 of of IN cord-000248-zueoyesj 1178 4 monoamine monoamine NN cord-000248-zueoyesj 1178 5 oxidase oxidase NN cord-000248-zueoyesj 1178 6 - - : cord-000248-zueoyesj 1178 7 A a DT cord-000248-zueoyesj 1178 8 expression expression NN cord-000248-zueoyesj 1178 9 in in IN cord-000248-zueoyesj 1178 10 high high JJ cord-000248-zueoyesj 1178 11 grade grade NN cord-000248-zueoyesj 1178 12 prostate prostate NN cord-000248-zueoyesj 1178 13 cancer cancer NN cord-000248-zueoyesj 1178 14 From from IN cord-000248-zueoyesj 1178 15 androgen androgen NN cord-000248-zueoyesj 1178 16 receptor receptor NN cord-000248-zueoyesj 1178 17 to to IN cord-000248-zueoyesj 1178 18 the the DT cord-000248-zueoyesj 1178 19 general general JJ cord-000248-zueoyesj 1178 20 transcription transcription NN cord-000248-zueoyesj 1178 21 factor factor NN cord-000248-zueoyesj 1178 22 TFIIH TFIIH NNP cord-000248-zueoyesj 1178 23 . . . cord-000248-zueoyesj 1179 1 Identification identification NN cord-000248-zueoyesj 1179 2 of of IN cord-000248-zueoyesj 1179 3 cdk cdk NNP cord-000248-zueoyesj 1179 4 activating activate VBG cord-000248-zueoyesj 1179 5 kinase kinase NN cord-000248-zueoyesj 1179 6 ( ( -LRB- cord-000248-zueoyesj 1179 7 CAK CAK NNP cord-000248-zueoyesj 1179 8 ) ) -RRB- cord-000248-zueoyesj 1179 9 as as IN cord-000248-zueoyesj 1179 10 an an DT cord-000248-zueoyesj 1179 11 androgen androgen NN cord-000248-zueoyesj 1179 12 receptor receptor NN cord-000248-zueoyesj 1179 13 NH(2)-terminal NH(2)-terminal NNP cord-000248-zueoyesj 1179 14 associated associate VBD cord-000248-zueoyesj 1179 15 coactivator coactivator NN cord-000248-zueoyesj 1179 16 Alphamethylacyl Alphamethylacyl NNP cord-000248-zueoyesj 1179 17 - - HYPH cord-000248-zueoyesj 1179 18 CoA CoA NNP cord-000248-zueoyesj 1179 19 racemase racemase NN cord-000248-zueoyesj 1179 20 - - : cord-000248-zueoyesj 1179 21 an an DT cord-000248-zueoyesj 1179 22 ' ' `` cord-000248-zueoyesj 1179 23 obscure obscure JJ cord-000248-zueoyesj 1179 24 ' ' '' cord-000248-zueoyesj 1179 25 metabolic metabolic JJ cord-000248-zueoyesj 1179 26 enzyme enzyme NN cord-000248-zueoyesj 1179 27 takes take VBZ cord-000248-zueoyesj 1179 28 centre centre NN cord-000248-zueoyesj 1179 29 stage stage NN cord-000248-zueoyesj 1179 30 Biopsy Biopsy NNP cord-000248-zueoyesj 1179 31 tissue tissue NN cord-000248-zueoyesj 1179 32 microarray microarray NN cord-000248-zueoyesj 1179 33 study study NN cord-000248-zueoyesj 1179 34 of of IN cord-000248-zueoyesj 1179 35 Ki-67 Ki-67 NNP cord-000248-zueoyesj 1179 36 expression expression NN cord-000248-zueoyesj 1179 37 in in IN cord-000248-zueoyesj 1179 38 untreated untreated JJ cord-000248-zueoyesj 1179 39 , , , cord-000248-zueoyesj 1179 40 localized localized JJ cord-000248-zueoyesj 1179 41 prostate prostate NN cord-000248-zueoyesj 1179 42 cancer cancer NN cord-000248-zueoyesj 1179 43 managed manage VBN cord-000248-zueoyesj 1179 44 by by IN cord-000248-zueoyesj 1179 45 active active JJ cord-000248-zueoyesj 1179 46 surveillance surveillance NN cord-000248-zueoyesj 1179 47 Alpha alpha NN cord-000248-zueoyesj 1179 48 - - HYPH cord-000248-zueoyesj 1179 49 methylacyl methylacyl JJ cord-000248-zueoyesj 1179 50 - - HYPH cord-000248-zueoyesj 1179 51 CoA coa NN cord-000248-zueoyesj 1179 52 racemase racemase NN cord-000248-zueoyesj 1179 53 ( ( -LRB- cord-000248-zueoyesj 1179 54 P504S P504S NNP cord-000248-zueoyesj 1179 55 ) ) -RRB- cord-000248-zueoyesj 1179 56 expression expression NN cord-000248-zueoyesj 1179 57 in in IN cord-000248-zueoyesj 1179 58 evolving evolve VBG cord-000248-zueoyesj 1179 59 carcinomas carcinoma NNS cord-000248-zueoyesj 1179 60 within within IN cord-000248-zueoyesj 1179 61 benign benign JJ cord-000248-zueoyesj 1179 62 prostatic prostatic JJ cord-000248-zueoyesj 1179 63 hyperplasia hyperplasia NN cord-000248-zueoyesj 1179 64 and and CC cord-000248-zueoyesj 1179 65 in in IN cord-000248-zueoyesj 1179 66 cancers cancer NNS cord-000248-zueoyesj 1179 67 of of IN cord-000248-zueoyesj 1179 68 the the DT cord-000248-zueoyesj 1179 69 transition transition NN cord-000248-zueoyesj 1179 70 zone zone NN cord-000248-zueoyesj 1179 71 Expression expression NN cord-000248-zueoyesj 1179 72 of of IN cord-000248-zueoyesj 1179 73 alpha alpha JJ cord-000248-zueoyesj 1179 74 - - HYPH cord-000248-zueoyesj 1179 75 methylacyl methylacyl JJ cord-000248-zueoyesj 1179 76 - - HYPH cord-000248-zueoyesj 1179 77 CoA coa NN cord-000248-zueoyesj 1179 78 racemase racemase NN cord-000248-zueoyesj 1179 79 ( ( -LRB- cord-000248-zueoyesj 1179 80 P504s P504s NNP cord-000248-zueoyesj 1179 81 ) ) -RRB- cord-000248-zueoyesj 1179 82 in in IN cord-000248-zueoyesj 1179 83 various various JJ cord-000248-zueoyesj 1179 84 malignant malignant JJ cord-000248-zueoyesj 1179 85 neoplasms neoplasm NNS cord-000248-zueoyesj 1179 86 and and CC cord-000248-zueoyesj 1179 87 normal normal JJ cord-000248-zueoyesj 1179 88 tissues tissue NNS cord-000248-zueoyesj 1179 89 : : : cord-000248-zueoyesj 1179 90 astudy astudy NN cord-000248-zueoyesj 1179 91 of of IN cord-000248-zueoyesj 1179 92 761 761 CD cord-000248-zueoyesj 1179 93 cases case NNS cord-000248-zueoyesj 1179 94 Using use VBG cord-000248-zueoyesj 1179 95 an an DT cord-000248-zueoyesj 1179 96 AMACR AMACR NNP cord-000248-zueoyesj 1179 97 ( ( -LRB- cord-000248-zueoyesj 1179 98 P504S)/34betaE12 P504S)/34betaE12 NNP cord-000248-zueoyesj 1179 99 / / SYM cord-000248-zueoyesj 1179 100 p63 p63 CD cord-000248-zueoyesj 1179 101 cocktail cocktail NN cord-000248-zueoyesj 1179 102 for for IN cord-000248-zueoyesj 1179 103 the the DT cord-000248-zueoyesj 1179 104 detection detection NN cord-000248-zueoyesj 1179 105 of of IN cord-000248-zueoyesj 1179 106 small small JJ cord-000248-zueoyesj 1179 107 focal focal JJ cord-000248-zueoyesj 1179 108 prostate prostate NN cord-000248-zueoyesj 1179 109 carcinoma carcinoma NN cord-000248-zueoyesj 1179 110 in in IN cord-000248-zueoyesj 1179 111 needle needle NN cord-000248-zueoyesj 1179 112 biopsy biopsy NN cord-000248-zueoyesj 1179 113 specimens specimen NNS cord-000248-zueoyesj 1179 114 Diagnostic diagnostic JJ cord-000248-zueoyesj 1179 115 utility utility NN cord-000248-zueoyesj 1179 116 of of IN cord-000248-zueoyesj 1179 117 alpha alpha JJ cord-000248-zueoyesj 1179 118 - - HYPH cord-000248-zueoyesj 1179 119 methylacyl methylacyl JJ cord-000248-zueoyesj 1179 120 CoA coa NN cord-000248-zueoyesj 1179 121 racemase racemase NNP cord-000248-zueoyesj 1179 122 ( ( -LRB- cord-000248-zueoyesj 1179 123 P504S P504S NNP cord-000248-zueoyesj 1179 124 ) ) -RRB- cord-000248-zueoyesj 1179 125 on on IN cord-000248-zueoyesj 1179 126 prostate prostate NN cord-000248-zueoyesj 1179 127 needle needle NN cord-000248-zueoyesj 1179 128 biopsy biopsy NN cord-000248-zueoyesj 1179 129 Discovery Discovery NNP cord-000248-zueoyesj 1179 130 and and CC cord-000248-zueoyesj 1179 131 clinical clinical JJ cord-000248-zueoyesj 1179 132 application application NN cord-000248-zueoyesj 1179 133 of of IN cord-000248-zueoyesj 1179 134 a a DT cord-000248-zueoyesj 1179 135 novel novel JJ cord-000248-zueoyesj 1179 136 prostate prostate NN cord-000248-zueoyesj 1179 137 cancer cancer NN cord-000248-zueoyesj 1179 138 marker marker NN cord-000248-zueoyesj 1179 139 : : : cord-000248-zueoyesj 1179 140 alpha alpha NN cord-000248-zueoyesj 1179 141 - - HYPH cord-000248-zueoyesj 1179 142 methylacyl methylacyl JJ cord-000248-zueoyesj 1179 143 CoA coa NN cord-000248-zueoyesj 1179 144 racemase racemase NNP cord-000248-zueoyesj 1180 1 ( ( -LRB- cord-000248-zueoyesj 1180 2 P504S P504S NNP cord-000248-zueoyesj 1180 3 ) ) -RRB- cord-000248-zueoyesj 1180 4 Alphamethylacyl Alphamethylacyl NNP cord-000248-zueoyesj 1180 5 - - HYPH cord-000248-zueoyesj 1180 6 CoA CoA NNP cord-000248-zueoyesj 1180 7 racemase racemase NN cord-000248-zueoyesj 1180 8 : : : cord-000248-zueoyesj 1180 9 a a DT cord-000248-zueoyesj 1180 10 multi multi JJ cord-000248-zueoyesj 1180 11 - - JJ cord-000248-zueoyesj 1180 12 institutional institutional JJ cord-000248-zueoyesj 1180 13 study study NN cord-000248-zueoyesj 1180 14 of of IN cord-000248-zueoyesj 1180 15 a a DT cord-000248-zueoyesj 1180 16 new new JJ cord-000248-zueoyesj 1180 17 prostate prostate NN cord-000248-zueoyesj 1180 18 cancer cancer NN cord-000248-zueoyesj 1180 19 marker marker NN cord-000248-zueoyesj 1180 20 Quantitative quantitative JJ cord-000248-zueoyesj 1180 21 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1180 22 detection detection NN cord-000248-zueoyesj 1180 23 of of IN cord-000248-zueoyesj 1180 24 the the DT cord-000248-zueoyesj 1180 25 molecular molecular JJ cord-000248-zueoyesj 1180 26 expression expression NN cord-000248-zueoyesj 1180 27 patterns pattern NNS cord-000248-zueoyesj 1180 28 in in IN cord-000248-zueoyesj 1180 29 proliferative proliferative JJ cord-000248-zueoyesj 1180 30 inflammatory inflammatory JJ cord-000248-zueoyesj 1180 31 atrophy atrophy NN cord-000248-zueoyesj 1181 1 The the DT cord-000248-zueoyesj 1181 2 importance importance NN cord-000248-zueoyesj 1181 3 of of IN cord-000248-zueoyesj 1181 4 determining determine VBG cord-000248-zueoyesj 1181 5 the the DT cord-000248-zueoyesj 1181 6 aggressiveness aggressiveness NN cord-000248-zueoyesj 1181 7 of of IN cord-000248-zueoyesj 1181 8 prostate prostate NN cord-000248-zueoyesj 1181 9 cancer cancer NN cord-000248-zueoyesj 1181 10 using use VBG cord-000248-zueoyesj 1181 11 serum serum NN cord-000248-zueoyesj 1181 12 and and CC cord-000248-zueoyesj 1181 13 tissue tissue NN cord-000248-zueoyesj 1181 14 molecular molecular JJ cord-000248-zueoyesj 1181 15 markers marker NNS cord-000248-zueoyesj 1181 16 GOLPH2 GOLPH2 NNP cord-000248-zueoyesj 1181 17 protein protein NN cord-000248-zueoyesj 1181 18 expression expression NN cord-000248-zueoyesj 1181 19 as as IN cord-000248-zueoyesj 1181 20 a a DT cord-000248-zueoyesj 1181 21 novel novel JJ cord-000248-zueoyesj 1181 22 tissue tissue NN cord-000248-zueoyesj 1181 23 biomarker biomarker NN cord-000248-zueoyesj 1181 24 for for IN cord-000248-zueoyesj 1181 25 prostate prostate NN cord-000248-zueoyesj 1181 26 cancer cancer NN cord-000248-zueoyesj 1181 27 : : : cord-000248-zueoyesj 1181 28 implications implication NNS cord-000248-zueoyesj 1181 29 for for IN cord-000248-zueoyesj 1181 30 tissue tissue NN cord-000248-zueoyesj 1181 31 - - HYPH cord-000248-zueoyesj 1181 32 based base VBN cord-000248-zueoyesj 1181 33 diagnostics diagnostic NNS cord-000248-zueoyesj 1181 34 Optimization Optimization NNP cord-000248-zueoyesj 1181 35 of of IN cord-000248-zueoyesj 1181 36 laser laser NN cord-000248-zueoyesj 1181 37 capture capture NN cord-000248-zueoyesj 1181 38 microdissection microdissection NN cord-000248-zueoyesj 1181 39 and and CC cord-000248-zueoyesj 1181 40 RNA RNA NNP cord-000248-zueoyesj 1181 41 amplification amplification NN cord-000248-zueoyesj 1181 42 for for IN cord-000248-zueoyesj 1181 43 gene gene NN cord-000248-zueoyesj 1181 44 expression expression NN cord-000248-zueoyesj 1181 45 profiling profiling NN cord-000248-zueoyesj 1181 46 of of IN cord-000248-zueoyesj 1181 47 prostate prostate NN cord-000248-zueoyesj 1181 48 cancer cancer NN cord-000248-zueoyesj 1181 49 ) ) -RRB- cord-000248-zueoyesj 1182 1 alpha alpha NN cord-000248-zueoyesj 1182 2 - - HYPH cord-000248-zueoyesj 1182 3 Methylacyl Methylacyl NNP cord-000248-zueoyesj 1182 4 - - HYPH cord-000248-zueoyesj 1182 5 CoA CoA NNP cord-000248-zueoyesj 1182 6 racemase racemase NN cord-000248-zueoyesj 1182 7 : : : cord-000248-zueoyesj 1182 8 expression expression NN cord-000248-zueoyesj 1182 9 levels level NNS cord-000248-zueoyesj 1182 10 of of IN cord-000248-zueoyesj 1182 11 this this DT cord-000248-zueoyesj 1182 12 novel novel JJ cord-000248-zueoyesj 1182 13 cancer cancer NN cord-000248-zueoyesj 1182 14 biomarker biomarker NN cord-000248-zueoyesj 1182 15 depend depend VBP cord-000248-zueoyesj 1182 16 on on IN cord-000248-zueoyesj 1182 17 tumor tumor NN cord-000248-zueoyesj 1182 18 differentiation differentiation NN cord-000248-zueoyesj 1183 1 Elevated elevated JJ cord-000248-zueoyesj 1183 2 alpha alpha NN cord-000248-zueoyesj 1183 3 - - HYPH cord-000248-zueoyesj 1183 4 methylacyl methylacyl JJ cord-000248-zueoyesj 1183 5 - - HYPH cord-000248-zueoyesj 1183 6 CoA coa NN cord-000248-zueoyesj 1183 7 racemase racemase NN cord-000248-zueoyesj 1183 8 enzymatic enzymatic JJ cord-000248-zueoyesj 1183 9 activity activity NN cord-000248-zueoyesj 1183 10 in in IN cord-000248-zueoyesj 1183 11 prostate prostate NN cord-000248-zueoyesj 1183 12 cancer cancer NN cord-000248-zueoyesj 1183 13 Comparison comparison NN cord-000248-zueoyesj 1183 14 of of IN cord-000248-zueoyesj 1183 15 monoclonal monoclonal JJ cord-000248-zueoyesj 1183 16 antibody antibody NN cord-000248-zueoyesj 1183 17 ( ( -LRB- cord-000248-zueoyesj 1183 18 P504S P504S NNP cord-000248-zueoyesj 1183 19 ) ) -RRB- cord-000248-zueoyesj 1183 20 and and CC cord-000248-zueoyesj 1183 21 polyclonal polyclonal JJ cord-000248-zueoyesj 1183 22 antibody antibody NN cord-000248-zueoyesj 1183 23 to to IN cord-000248-zueoyesj 1183 24 alpha alpha NNP cord-000248-zueoyesj 1183 25 methylacyl methylacyl JJ cord-000248-zueoyesj 1183 26 - - HYPH cord-000248-zueoyesj 1183 27 CoA coa NN cord-000248-zueoyesj 1183 28 racemase racemase NN cord-000248-zueoyesj 1183 29 ( ( -LRB- cord-000248-zueoyesj 1183 30 AMACR AMACR NNP cord-000248-zueoyesj 1183 31 ) ) -RRB- cord-000248-zueoyesj 1183 32 in in IN cord-000248-zueoyesj 1183 33 the the DT cord-000248-zueoyesj 1183 34 work work NN cord-000248-zueoyesj 1183 35 - - HYPH cord-000248-zueoyesj 1183 36 up up NN cord-000248-zueoyesj 1183 37 of of IN cord-000248-zueoyesj 1183 38 prostate prostate NN cord-000248-zueoyesj 1183 39 cancer cancer NN cord-000248-zueoyesj 1183 40 Immunohistochemical Immunohistochemical NNP cord-000248-zueoyesj 1183 41 detection detection NN cord-000248-zueoyesj 1183 42 of of IN cord-000248-zueoyesj 1183 43 carcinoma carcinoma NN cord-000248-zueoyesj 1183 44 in in IN cord-000248-zueoyesj 1183 45 radical radical JJ cord-000248-zueoyesj 1183 46 prostatectomy prostatectomy NN cord-000248-zueoyesj 1183 47 specimens specimen NNS cord-000248-zueoyesj 1183 48 following follow VBG cord-000248-zueoyesj 1183 49 hormone hormone NN cord-000248-zueoyesj 1183 50 therapy therapy NN cord-000248-zueoyesj 1183 51 Basal Basal NNP cord-000248-zueoyesj 1183 52 cell cell NN cord-000248-zueoyesj 1183 53 subpopulation subpopulation NN cord-000248-zueoyesj 1183 54 as as IN cord-000248-zueoyesj 1183 55 putative putative JJ cord-000248-zueoyesj 1183 56 human human JJ cord-000248-zueoyesj 1183 57 prostate prostate NN cord-000248-zueoyesj 1183 58 carcinoma carcinoma NN cord-000248-zueoyesj 1183 59 stem stem NN cord-000248-zueoyesj 1183 60 cells cell NNS cord-000248-zueoyesj 1184 1 A a DT cord-000248-zueoyesj 1184 2 statistical statistical JJ cord-000248-zueoyesj 1184 3 method method NN cord-000248-zueoyesj 1184 4 for for IN cord-000248-zueoyesj 1184 5 identifying identify VBG cord-000248-zueoyesj 1184 6 differential differential JJ cord-000248-zueoyesj 1184 7 gene gene NN cord-000248-zueoyesj 1184 8 - - HYPH cord-000248-zueoyesj 1184 9 gene gene NN cord-000248-zueoyesj 1184 10 co co NN cord-000248-zueoyesj 1184 11 - - JJ cord-000248-zueoyesj 1184 12 expression expression JJ cord-000248-zueoyesj 1184 13 patterns pattern NNS cord-000248-zueoyesj 1184 14 Alphamethylacyl Alphamethylacyl NNP cord-000248-zueoyesj 1184 15 - - HYPH cord-000248-zueoyesj 1184 16 CoA coa NN cord-000248-zueoyesj 1184 17 racemase racemase NN cord-000248-zueoyesj 1184 18 ( ( -LRB- cord-000248-zueoyesj 1184 19 AMACR AMACR NNP cord-000248-zueoyesj 1184 20 / / SYM cord-000248-zueoyesj 1184 21 P504S P504S NNP cord-000248-zueoyesj 1184 22 ) ) -RRB- cord-000248-zueoyesj 1184 23 protein protein NN cord-000248-zueoyesj 1184 24 expression expression NN cord-000248-zueoyesj 1184 25 in in IN cord-000248-zueoyesj 1184 26 urothelial urothelial JJ cord-000248-zueoyesj 1184 27 carcinoma carcinoma NN cord-000248-zueoyesj 1184 28 of of IN cord-000248-zueoyesj 1184 29 the the DT cord-000248-zueoyesj 1184 30 upper upper JJ cord-000248-zueoyesj 1184 31 urinary urinary JJ cord-000248-zueoyesj 1184 32 tract tract NN cord-000248-zueoyesj 1184 33 correlates correlate VBZ cord-000248-zueoyesj 1184 34 with with IN cord-000248-zueoyesj 1184 35 tumour tumour NN cord-000248-zueoyesj 1184 36 progression progression NN cord-000248-zueoyesj 1184 37 Sequence sequence NN cord-000248-zueoyesj 1184 38 variation variation NN cord-000248-zueoyesj 1184 39 in in IN cord-000248-zueoyesj 1184 40 alpha alpha JJ cord-000248-zueoyesj 1184 41 - - HYPH cord-000248-zueoyesj 1184 42 methylacyl methylacyl JJ cord-000248-zueoyesj 1184 43 - - HYPH cord-000248-zueoyesj 1184 44 CoA coa NN cord-000248-zueoyesj 1184 45 racemase racemase NN cord-000248-zueoyesj 1184 46 and and CC cord-000248-zueoyesj 1184 47 risk risk NN cord-000248-zueoyesj 1184 48 of of IN cord-000248-zueoyesj 1184 49 early early JJ cord-000248-zueoyesj 1184 50 - - HYPH cord-000248-zueoyesj 1184 51 onset onset NN cord-000248-zueoyesj 1184 52 and and CC cord-000248-zueoyesj 1184 53 familial familial JJ cord-000248-zueoyesj 1184 54 prostate prostate NN cord-000248-zueoyesj 1184 55 cancer cancer NN cord-000248-zueoyesj 1184 56 Malignant malignant JJ cord-000248-zueoyesj 1184 57 transformation transformation NN cord-000248-zueoyesj 1184 58 of of IN cord-000248-zueoyesj 1184 59 human human JJ cord-000248-zueoyesj 1184 60 benign benign JJ cord-000248-zueoyesj 1184 61 prostate prostate NN cord-000248-zueoyesj 1184 62 epithelial epithelial JJ cord-000248-zueoyesj 1184 63 cells cell NNS cord-000248-zueoyesj 1184 64 by by IN cord-000248-zueoyesj 1184 65 high high JJ cord-000248-zueoyesj 1184 66 linear linear JJ cord-000248-zueoyesj 1184 67 energy energy NN cord-000248-zueoyesj 1184 68 transfer transfer NN cord-000248-zueoyesj 1184 69 alpha alpha NN cord-000248-zueoyesj 1184 70 - - HYPH cord-000248-zueoyesj 1184 71 particles particle NNS cord-000248-zueoyesj 1184 72 Expression expression NN cord-000248-zueoyesj 1184 73 of of IN cord-000248-zueoyesj 1184 74 alpha alpha NN cord-000248-zueoyesj 1184 75 - - HYPH cord-000248-zueoyesj 1184 76 methylacylcoenzyme methylacylcoenzyme NNS cord-000248-zueoyesj 1185 1 A a DT cord-000248-zueoyesj 1185 2 racemase racemase NN cord-000248-zueoyesj 1185 3 in in IN cord-000248-zueoyesj 1185 4 dysplastic dysplastic JJ cord-000248-zueoyesj 1185 5 Barrett Barrett NNP cord-000248-zueoyesj 1185 6 's 's POS cord-000248-zueoyesj 1185 7 epithelium epithelium NN cord-000248-zueoyesj 1185 8 Quantitative quantitative JJ cord-000248-zueoyesj 1185 9 analysis analysis NN cord-000248-zueoyesj 1185 10 of of IN cord-000248-zueoyesj 1185 11 a a DT cord-000248-zueoyesj 1185 12 panel panel NN cord-000248-zueoyesj 1185 13 of of IN cord-000248-zueoyesj 1185 14 gene gene NN cord-000248-zueoyesj 1185 15 expression expression NN cord-000248-zueoyesj 1185 16 in in IN cord-000248-zueoyesj 1185 17 prostate prostate NN cord-000248-zueoyesj 1185 18 cancer cancer NN cord-000248-zueoyesj 1185 19 - - HYPH cord-000248-zueoyesj 1185 20 with with IN cord-000248-zueoyesj 1185 21 emphasis emphasis NN cord-000248-zueoyesj 1185 22 on on IN cord-000248-zueoyesj 1185 23 NPY NPY NNP cord-000248-zueoyesj 1185 24 expression expression NN cord-000248-zueoyesj 1185 25 analysis analysis NN cord-000248-zueoyesj 1186 1 The the DT cord-000248-zueoyesj 1186 2 value value NN cord-000248-zueoyesj 1186 3 of of IN cord-000248-zueoyesj 1186 4 using use VBG cord-000248-zueoyesj 1186 5 an an DT cord-000248-zueoyesj 1186 6 AMACR/34betaE12 AMACR/34betaE12 NNP cord-000248-zueoyesj 1186 7 / / SYM cord-000248-zueoyesj 1186 8 p63 p63 CD cord-000248-zueoyesj 1186 9 cocktail cocktail NN cord-000248-zueoyesj 1186 10 double double JJ cord-000248-zueoyesj 1186 11 staining staining NN cord-000248-zueoyesj 1186 12 for for IN cord-000248-zueoyesj 1186 13 diagnosis diagnosis NN cord-000248-zueoyesj 1186 14 of of IN cord-000248-zueoyesj 1186 15 prostate prostate NN cord-000248-zueoyesj 1186 16 carcinoma carcinoma NN cord-000248-zueoyesj 1186 17 Decreased decrease VBD cord-000248-zueoyesj 1186 18 gene gene NN cord-000248-zueoyesj 1186 19 expression expression NN cord-000248-zueoyesj 1186 20 of of IN cord-000248-zueoyesj 1186 21 steroid steroid NN cord-000248-zueoyesj 1186 22 5 5 CD cord-000248-zueoyesj 1186 23 alpha alpha NN cord-000248-zueoyesj 1186 24 - - HYPH cord-000248-zueoyesj 1186 25 reductase reductase NN cord-000248-zueoyesj 1186 26 2 2 CD cord-000248-zueoyesj 1186 27 in in IN cord-000248-zueoyesj 1186 28 human human JJ cord-000248-zueoyesj 1186 29 prostate prostate NN cord-000248-zueoyesj 1186 30 cancer cancer NN cord-000248-zueoyesj 1186 31 : : : cord-000248-zueoyesj 1186 32 implications implication NNS cord-000248-zueoyesj 1186 33 for for IN cord-000248-zueoyesj 1186 34 finasteride finasteride NN cord-000248-zueoyesj 1186 35 therapy therapy NN cord-000248-zueoyesj 1186 36 of of IN cord-000248-zueoyesj 1186 37 prostate prostate NN cord-000248-zueoyesj 1186 38 carcinoma carcinoma NN cord-000248-zueoyesj 1186 39 Alpha alpha NN cord-000248-zueoyesj 1186 40 - - HYPH cord-000248-zueoyesj 1186 41 methylacyl methylacyl JJ cord-000248-zueoyesj 1186 42 - - HYPH cord-000248-zueoyesj 1186 43 CoA coa NN cord-000248-zueoyesj 1186 44 racemase racemase NN cord-000248-zueoyesj 1186 45 : : : cord-000248-zueoyesj 1186 46 a a DT cord-000248-zueoyesj 1186 47 new new JJ cord-000248-zueoyesj 1186 48 molecular molecular JJ cord-000248-zueoyesj 1186 49 marker marker NN cord-000248-zueoyesj 1186 50 for for IN cord-000248-zueoyesj 1186 51 prostate prostate NN cord-000248-zueoyesj 1186 52 cancer cancer NN cord-000248-zueoyesj 1186 53 Alpha alpha NN cord-000248-zueoyesj 1186 54 - - HYPH cord-000248-zueoyesj 1186 55 methylacyl methylacyl JJ cord-000248-zueoyesj 1186 56 - - HYPH cord-000248-zueoyesj 1186 57 CoA coa NN cord-000248-zueoyesj 1186 58 racemase racemase NN cord-000248-zueoyesj 1186 59 : : : cord-000248-zueoyesj 1186 60 a a DT cord-000248-zueoyesj 1186 61 variably variably RB cord-000248-zueoyesj 1186 62 sensitive sensitive JJ cord-000248-zueoyesj 1186 63 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1186 64 marker marker NN cord-000248-zueoyesj 1186 65 for for IN cord-000248-zueoyesj 1186 66 the the DT cord-000248-zueoyesj 1186 67 diagnosis diagnosis NN cord-000248-zueoyesj 1186 68 of of IN cord-000248-zueoyesj 1186 69 small small JJ cord-000248-zueoyesj 1186 70 prostate prostate NN cord-000248-zueoyesj 1186 71 cancer cancer NN cord-000248-zueoyesj 1186 72 foci foci NN cord-000248-zueoyesj 1186 73 on on IN cord-000248-zueoyesj 1186 74 needle needle NN cord-000248-zueoyesj 1186 75 biopsy biopsy NN cord-000248-zueoyesj 1186 76 Neoadjuvant Neoadjuvant NNP cord-000248-zueoyesj 1186 77 docetaxel docetaxel VBD cord-000248-zueoyesj 1186 78 treatment treatment NN cord-000248-zueoyesj 1186 79 for for IN cord-000248-zueoyesj 1186 80 locally locally RB cord-000248-zueoyesj 1186 81 advanced advanced JJ cord-000248-zueoyesj 1186 82 prostate prostate NN cord-000248-zueoyesj 1186 83 cancer cancer NN cord-000248-zueoyesj 1186 84 : : : cord-000248-zueoyesj 1186 85 a a DT cord-000248-zueoyesj 1186 86 clinicopathologic clinicopathologic JJ cord-000248-zueoyesj 1186 87 study study NN cord-000248-zueoyesj 1186 88 Biomarkers Biomarkers NNPS cord-000248-zueoyesj 1186 89 for for IN cord-000248-zueoyesj 1186 90 Prostate Prostate NNP cord-000248-zueoyesj 1186 91 Cancer Cancer NNP cord-000248-zueoyesj 1186 92 Method Method NNP cord-000248-zueoyesj 1186 93 for for IN cord-000248-zueoyesj 1186 94 quantification quantification NN cord-000248-zueoyesj 1186 95 of of IN cord-000248-zueoyesj 1186 96 a a DT cord-000248-zueoyesj 1186 97 prostate prostate NN cord-000248-zueoyesj 1186 98 cancer cancer NN cord-000248-zueoyesj 1186 99 biomarker biomarker NN cord-000248-zueoyesj 1186 100 in in IN cord-000248-zueoyesj 1186 101 urine urine NN cord-000248-zueoyesj 1186 102 without without IN cord-000248-zueoyesj 1186 103 sample sample NN cord-000248-zueoyesj 1186 104 preparation preparation NN cord-000248-zueoyesj 1186 105 Effects effect NNS cord-000248-zueoyesj 1186 106 of of IN cord-000248-zueoyesj 1186 107 the the DT cord-000248-zueoyesj 1186 108 dual dual JJ cord-000248-zueoyesj 1186 109 5 5 CD cord-000248-zueoyesj 1186 110 alpha alpha NN cord-000248-zueoyesj 1186 111 - - HYPH cord-000248-zueoyesj 1186 112 reductase reductase NN cord-000248-zueoyesj 1186 113 inhibitor inhibitor NN cord-000248-zueoyesj 1186 114 dutasteride dutasteride NN cord-000248-zueoyesj 1186 115 on on IN cord-000248-zueoyesj 1186 116 apoptosis apoptosis NN cord-000248-zueoyesj 1186 117 in in IN cord-000248-zueoyesj 1186 118 primary primary JJ cord-000248-zueoyesj 1186 119 cultures culture NNS cord-000248-zueoyesj 1186 120 of of IN cord-000248-zueoyesj 1186 121 prostate prostate NN cord-000248-zueoyesj 1186 122 cancer cancer NN cord-000248-zueoyesj 1186 123 epithelial epithelial JJ cord-000248-zueoyesj 1186 124 cells cell NNS cord-000248-zueoyesj 1186 125 and and CC cord-000248-zueoyesj 1186 126 cell cell NN cord-000248-zueoyesj 1186 127 lines line NNS cord-000248-zueoyesj 1187 1 Routine routine JJ cord-000248-zueoyesj 1187 2 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1187 3 staining stain VBG cord-000248-zueoyesj 1187 4 for for IN cord-000248-zueoyesj 1187 5 high high JJ cord-000248-zueoyesj 1187 6 - - HYPH cord-000248-zueoyesj 1187 7 molecular molecular JJ cord-000248-zueoyesj 1187 8 weight weight NN cord-000248-zueoyesj 1187 9 cytokeratin cytokeratin NNP cord-000248-zueoyesj 1187 10 34-beta 34-beta CD cord-000248-zueoyesj 1187 11 and and CC cord-000248-zueoyesj 1187 12 alpha alpha NN cord-000248-zueoyesj 1187 13 - - HYPH cord-000248-zueoyesj 1187 14 methylacyl methylacyl JJ cord-000248-zueoyesj 1187 15 CoA coa NN cord-000248-zueoyesj 1187 16 racemase racemase NNP cord-000248-zueoyesj 1187 17 ( ( -LRB- cord-000248-zueoyesj 1187 18 P504S P504S NNP cord-000248-zueoyesj 1187 19 ) ) -RRB- cord-000248-zueoyesj 1187 20 in in IN cord-000248-zueoyesj 1187 21 postirradiation postirradiation NN cord-000248-zueoyesj 1187 22 prostate prostate NN cord-000248-zueoyesj 1187 23 biopsies biopsy NNS cord-000248-zueoyesj 1187 24 Search search VBP cord-000248-zueoyesj 1187 25 for for IN cord-000248-zueoyesj 1187 26 residual residual JJ cord-000248-zueoyesj 1187 27 prostate prostate NN cord-000248-zueoyesj 1187 28 cancer cancer NN cord-000248-zueoyesj 1187 29 on on IN cord-000248-zueoyesj 1187 30 pT0 pt0 NN cord-000248-zueoyesj 1187 31 radical radical JJ cord-000248-zueoyesj 1187 32 prostatectomy prostatectomy NN cord-000248-zueoyesj 1187 33 after after IN cord-000248-zueoyesj 1187 34 positive positive JJ cord-000248-zueoyesj 1187 35 biopsy biopsy NN cord-000248-zueoyesj 1187 36 Branched branch VBD cord-000248-zueoyesj 1187 37 fatty fatty JJ cord-000248-zueoyesj 1187 38 acids acid NNS cord-000248-zueoyesj 1187 39 in in IN cord-000248-zueoyesj 1187 40 dairy dairy NN cord-000248-zueoyesj 1187 41 and and CC cord-000248-zueoyesj 1187 42 beef beef NN cord-000248-zueoyesj 1187 43 products product NNS cord-000248-zueoyesj 1187 44 markedly markedly RB cord-000248-zueoyesj 1187 45 enhance enhance VBP cord-000248-zueoyesj 1187 46 alpha alpha NN cord-000248-zueoyesj 1187 47 - - HYPH cord-000248-zueoyesj 1187 48 methylacyl methylacyl JJ cord-000248-zueoyesj 1187 49 - - HYPH cord-000248-zueoyesj 1187 50 CoA coa NN cord-000248-zueoyesj 1187 51 racemase racemase NN cord-000248-zueoyesj 1187 52 expression expression NN cord-000248-zueoyesj 1187 53 in in IN cord-000248-zueoyesj 1187 54 prostate prostate NN cord-000248-zueoyesj 1187 55 cancer cancer NN cord-000248-zueoyesj 1187 56 cells cell NNS cord-000248-zueoyesj 1187 57 in in IN cord-000248-zueoyesj 1187 58 vitro vitro FW cord-000248-zueoyesj 1187 59 Alpha alpha NN cord-000248-zueoyesj 1187 60 - - HYPH cord-000248-zueoyesj 1187 61 methyl methyl NN cord-000248-zueoyesj 1187 62 CoA coa NN cord-000248-zueoyesj 1187 63 racemase racemase NN cord-000248-zueoyesj 1187 64 expression expression NN cord-000248-zueoyesj 1187 65 in in IN cord-000248-zueoyesj 1187 66 renal renal JJ cord-000248-zueoyesj 1187 67 cell cell NN cord-000248-zueoyesj 1187 68 carcinomas carcinoma NNS cord-000248-zueoyesj 1187 69 Diagnostic diagnostic JJ cord-000248-zueoyesj 1187 70 utility utility NN cord-000248-zueoyesj 1187 71 of of IN cord-000248-zueoyesj 1187 72 a a DT cord-000248-zueoyesj 1187 73 p63 p63 CD cord-000248-zueoyesj 1187 74 / / SYM cord-000248-zueoyesj 1187 75 alpha alpha NN cord-000248-zueoyesj 1187 76 - - HYPH cord-000248-zueoyesj 1187 77 methyl methyl JJ cord-000248-zueoyesj 1187 78 - - HYPH cord-000248-zueoyesj 1187 79 CoA coa NN cord-000248-zueoyesj 1187 80 - - HYPH cord-000248-zueoyesj 1187 81 racemase racemase NNP cord-000248-zueoyesj 1187 82 ( ( -LRB- cord-000248-zueoyesj 1187 83 p504s p504s CD cord-000248-zueoyesj 1187 84 ) ) -RRB- cord-000248-zueoyesj 1187 85 cocktail cocktail NN cord-000248-zueoyesj 1187 86 in in IN cord-000248-zueoyesj 1187 87 atypical atypical JJ cord-000248-zueoyesj 1187 88 foci focus NNS cord-000248-zueoyesj 1187 89 in in IN cord-000248-zueoyesj 1187 90 the the DT cord-000248-zueoyesj 1187 91 prostate prostate NN cord-000248-zueoyesj 1187 92 Value value NN cord-000248-zueoyesj 1187 93 of of IN cord-000248-zueoyesj 1187 94 new new JJ cord-000248-zueoyesj 1187 95 prostate prostate NN cord-000248-zueoyesj 1187 96 cancer cancer NN cord-000248-zueoyesj 1187 97 markers marker NNS cord-000248-zueoyesj 1187 98 : : : cord-000248-zueoyesj 1187 99 alpha alpha NNP cord-000248-zueoyesj 1187 100 methylacyl methylacyl NNP cord-000248-zueoyesj 1187 101 CoA CoA NNP cord-000248-zueoyesj 1187 102 racemase racemase NNP cord-000248-zueoyesj 1187 103 ( ( -LRB- cord-000248-zueoyesj 1187 104 P504S P504S NNP cord-000248-zueoyesj 1187 105 ) ) -RRB- cord-000248-zueoyesj 1187 106 and and CC cord-000248-zueoyesj 1187 107 p63 p63 NNP cord-000248-zueoyesj 1187 108 Evaluation Evaluation NNP cord-000248-zueoyesj 1187 109 of of IN cord-000248-zueoyesj 1187 110 p63 p63 CD cord-000248-zueoyesj 1187 111 and and CC cord-000248-zueoyesj 1187 112 p504s p504s CD cord-000248-zueoyesj 1187 113 markers marker NNS cord-000248-zueoyesj 1187 114 for for IN cord-000248-zueoyesj 1187 115 the the DT cord-000248-zueoyesj 1187 116 diagnosis diagnosis NN cord-000248-zueoyesj 1187 117 of of IN cord-000248-zueoyesj 1187 118 prostate prostate NN cord-000248-zueoyesj 1187 119 cancer cancer NN cord-000248-zueoyesj 1187 120 A a DT cord-000248-zueoyesj 1187 121 preliminary preliminary JJ cord-000248-zueoyesj 1187 122 study study NN cord-000248-zueoyesj 1187 123 of of IN cord-000248-zueoyesj 1187 124 the the DT cord-000248-zueoyesj 1187 125 baboon baboon NN cord-000248-zueoyesj 1187 126 prostate prostate NN cord-000248-zueoyesj 1187 127 pathophysiology pathophysiology NN cord-000248-zueoyesj 1187 128 Alternative alternative JJ cord-000248-zueoyesj 1187 129 spliced splice VBN cord-000248-zueoyesj 1187 130 variants variant NNS cord-000248-zueoyesj 1187 131 of of IN cord-000248-zueoyesj 1187 132 the the DT cord-000248-zueoyesj 1187 133 alpha alpha JJ cord-000248-zueoyesj 1187 134 - - HYPH cord-000248-zueoyesj 1187 135 methylacyl methylacyl JJ cord-000248-zueoyesj 1187 136 - - HYPH cord-000248-zueoyesj 1187 137 CoA coa NN cord-000248-zueoyesj 1187 138 racemase racemase NN cord-000248-zueoyesj 1187 139 gene gene NN cord-000248-zueoyesj 1187 140 and and CC cord-000248-zueoyesj 1187 141 their -PRON- PRP$ cord-000248-zueoyesj 1187 142 expression expression NN cord-000248-zueoyesj 1187 143 in in IN cord-000248-zueoyesj 1187 144 prostate prostate NN cord-000248-zueoyesj 1187 145 cancer cancer NN cord-000248-zueoyesj 1187 146 A a DT cord-000248-zueoyesj 1187 147 variant variant NN cord-000248-zueoyesj 1187 148 of of IN cord-000248-zueoyesj 1187 149 the the DT cord-000248-zueoyesj 1187 150 alpha alpha NN cord-000248-zueoyesj 1187 151 - - HYPH cord-000248-zueoyesj 1187 152 methyl methyl JJ cord-000248-zueoyesj 1187 153 - - HYPH cord-000248-zueoyesj 1187 154 acyl acyl NN cord-000248-zueoyesj 1187 155 - - HYPH cord-000248-zueoyesj 1187 156 CoA coa NN cord-000248-zueoyesj 1187 157 racemase racemase NN cord-000248-zueoyesj 1187 158 gene gene NN cord-000248-zueoyesj 1187 159 created create VBN cord-000248-zueoyesj 1187 160 by by IN cord-000248-zueoyesj 1187 161 a a DT cord-000248-zueoyesj 1187 162 deletion deletion NN cord-000248-zueoyesj 1187 163 in in IN cord-000248-zueoyesj 1187 164 exon exon NN cord-000248-zueoyesj 1187 165 5 5 CD cord-000248-zueoyesj 1187 166 and and CC cord-000248-zueoyesj 1187 167 its -PRON- PRP$ cord-000248-zueoyesj 1187 168 expression expression NN cord-000248-zueoyesj 1187 169 in in IN cord-000248-zueoyesj 1187 170 prostate prostate NN cord-000248-zueoyesj 1187 171 cancer cancer NN cord-000248-zueoyesj 1187 172 Utility utility NN cord-000248-zueoyesj 1187 173 of of IN cord-000248-zueoyesj 1187 174 alpha alpha NN cord-000248-zueoyesj 1187 175 - - HYPH cord-000248-zueoyesj 1187 176 methylacyl methylacyl JJ cord-000248-zueoyesj 1188 1 coenzyme coenzyme NNP cord-000248-zueoyesj 1188 2 A a DT cord-000248-zueoyesj 1188 3 racemase racemase NN cord-000248-zueoyesj 1188 4 ( ( -LRB- cord-000248-zueoyesj 1188 5 p504s p504s CD cord-000248-zueoyesj 1188 6 antibody antibody NN cord-000248-zueoyesj 1188 7 ) ) -RRB- cord-000248-zueoyesj 1188 8 as as IN cord-000248-zueoyesj 1188 9 a a DT cord-000248-zueoyesj 1188 10 diagnostic diagnostic JJ cord-000248-zueoyesj 1188 11 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1188 12 marker marker NN cord-000248-zueoyesj 1188 13 for for IN cord-000248-zueoyesj 1188 14 cancer cancer NN cord-000248-zueoyesj 1188 15 Alpha alpha NN cord-000248-zueoyesj 1188 16 - - HYPH cord-000248-zueoyesj 1188 17 methylacyl methylacyl JJ cord-000248-zueoyesj 1188 18 - - HYPH cord-000248-zueoyesj 1188 19 CoA coa NN cord-000248-zueoyesj 1188 20 racemase racemase NN cord-000248-zueoyesj 1188 21 as as IN cord-000248-zueoyesj 1188 22 a a DT cord-000248-zueoyesj 1188 23 marker marker NN cord-000248-zueoyesj 1188 24 in in IN cord-000248-zueoyesj 1188 25 the the DT cord-000248-zueoyesj 1188 26 differential differential JJ cord-000248-zueoyesj 1188 27 diagnosis diagnosis NN cord-000248-zueoyesj 1188 28 of of IN cord-000248-zueoyesj 1188 29 metanephric metanephric JJ cord-000248-zueoyesj 1188 30 adenoma adenoma NN cord-000248-zueoyesj 1188 31 Frequent frequent JJ cord-000248-zueoyesj 1188 32 overexpression overexpression NN cord-000248-zueoyesj 1188 33 of of IN cord-000248-zueoyesj 1188 34 ETS ETS NNP cord-000248-zueoyesj 1188 35 - - HYPH cord-000248-zueoyesj 1188 36 related relate VBN cord-000248-zueoyesj 1188 37 gene-1 gene-1 NNP cord-000248-zueoyesj 1189 1 ( ( -LRB- cord-000248-zueoyesj 1189 2 ERG1 ERG1 NNP cord-000248-zueoyesj 1189 3 ) ) -RRB- cord-000248-zueoyesj 1189 4 in in IN cord-000248-zueoyesj 1189 5 prostate prostate NN cord-000248-zueoyesj 1189 6 cancer cancer NN cord-000248-zueoyesj 1189 7 transcriptome transcriptome NN cord-000248-zueoyesj 1189 8 Human Human NNP cord-000248-zueoyesj 1189 9 telomerase telomerase NN cord-000248-zueoyesj 1189 10 and and CC cord-000248-zueoyesj 1190 1 alpha alpha JJ cord-000248-zueoyesj 1190 2 - - HYPH cord-000248-zueoyesj 1190 3 methylacyl methylacyl NN cord-000248-zueoyesj 1190 4 - - HYPH cord-000248-zueoyesj 1190 5 coenzyme coenzyme VBZ cord-000248-zueoyesj 1190 6 A a DT cord-000248-zueoyesj 1190 7 racemase racemase NN cord-000248-zueoyesj 1190 8 in in IN cord-000248-zueoyesj 1190 9 prostatic prostatic JJ cord-000248-zueoyesj 1190 10 carcinoma carcinoma NN cord-000248-zueoyesj 1190 11 . . . cord-000248-zueoyesj 1191 1 A a DT cord-000248-zueoyesj 1191 2 comparative comparative JJ cord-000248-zueoyesj 1191 3 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1191 4 study study NN cord-000248-zueoyesj 1191 5 Prostate Prostate NNP cord-000248-zueoyesj 1191 6 cancer cancer NN cord-000248-zueoyesj 1191 7 detection detection NN cord-000248-zueoyesj 1191 8 on on IN cord-000248-zueoyesj 1191 9 urinalysis urinalysis NN cord-000248-zueoyesj 1191 10 for for IN cord-000248-zueoyesj 1191 11 alpha alpha NNP cord-000248-zueoyesj 1191 12 methylacyl methylacyl NNP cord-000248-zueoyesj 1191 13 coenzyme coenzyme NNP cord-000248-zueoyesj 1192 1 a a DT cord-000248-zueoyesj 1192 2 racemase racemase NN cord-000248-zueoyesj 1192 3 protein protein NN cord-000248-zueoyesj 1192 4 Decreased decrease VBD cord-000248-zueoyesj 1193 1 alpha alpha JJ cord-000248-zueoyesj 1193 2 - - HYPH cord-000248-zueoyesj 1193 3 methylacyl methylacyl JJ cord-000248-zueoyesj 1193 4 CoA coa NN cord-000248-zueoyesj 1193 5 racemase racemase NN cord-000248-zueoyesj 1193 6 expression expression NN cord-000248-zueoyesj 1193 7 in in IN cord-000248-zueoyesj 1193 8 localized localized JJ cord-000248-zueoyesj 1193 9 prostate prostate NN cord-000248-zueoyesj 1193 10 cancer cancer NN cord-000248-zueoyesj 1193 11 is be VBZ cord-000248-zueoyesj 1193 12 associated associate VBN cord-000248-zueoyesj 1193 13 with with IN cord-000248-zueoyesj 1193 14 an an DT cord-000248-zueoyesj 1193 15 increased increase VBN cord-000248-zueoyesj 1193 16 rate rate NN cord-000248-zueoyesj 1193 17 of of IN cord-000248-zueoyesj 1193 18 biochemical biochemical JJ cord-000248-zueoyesj 1193 19 recurrence recurrence NN cord-000248-zueoyesj 1193 20 and and CC cord-000248-zueoyesj 1193 21 cancer cancer NN cord-000248-zueoyesj 1193 22 - - HYPH cord-000248-zueoyesj 1193 23 specific specific JJ cord-000248-zueoyesj 1193 24 death death NN cord-000248-zueoyesj 1193 25 Quantitative quantitative JJ cord-000248-zueoyesj 1193 26 determination determination NN cord-000248-zueoyesj 1193 27 of of IN cord-000248-zueoyesj 1193 28 expression expression NN cord-000248-zueoyesj 1193 29 of of IN cord-000248-zueoyesj 1193 30 the the DT cord-000248-zueoyesj 1193 31 prostate prostate NN cord-000248-zueoyesj 1193 32 cancer cancer NN cord-000248-zueoyesj 1193 33 protein protein NN cord-000248-zueoyesj 1193 34 alphamethylacyl alphamethylacyl NNP cord-000248-zueoyesj 1193 35 - - HYPH cord-000248-zueoyesj 1193 36 CoA coa NN cord-000248-zueoyesj 1193 37 racemase racemase NN cord-000248-zueoyesj 1193 38 using use VBG cord-000248-zueoyesj 1193 39 automated automate VBN cord-000248-zueoyesj 1193 40 quantitative quantitative JJ cord-000248-zueoyesj 1193 41 analysis analysis NN cord-000248-zueoyesj 1193 42 ( ( -LRB- cord-000248-zueoyesj 1193 43 AQUA AQUA NNP cord-000248-zueoyesj 1193 44 ) ) -RRB- cord-000248-zueoyesj 1193 45 : : : cord-000248-zueoyesj 1193 46 a a DT cord-000248-zueoyesj 1193 47 novel novel JJ cord-000248-zueoyesj 1193 48 paradigm paradigm NN cord-000248-zueoyesj 1193 49 for for IN cord-000248-zueoyesj 1193 50 automated automated JJ cord-000248-zueoyesj 1193 51 and and CC cord-000248-zueoyesj 1193 52 continuous continuous JJ cord-000248-zueoyesj 1193 53 biomarker biomarker NN cord-000248-zueoyesj 1193 54 measurements measurement NNS cord-000248-zueoyesj 1193 55 ) ) -RRB- cord-000248-zueoyesj 1194 1 alpha alpha NN cord-000248-zueoyesj 1194 2 - - HYPH cord-000248-zueoyesj 1194 3 Methylacyl Methylacyl NNP cord-000248-zueoyesj 1194 4 coenzyme coenzyme VBZ cord-000248-zueoyesj 1194 5 A a DT cord-000248-zueoyesj 1194 6 racemase racemase NN cord-000248-zueoyesj 1194 7 as as IN cord-000248-zueoyesj 1194 8 a a DT cord-000248-zueoyesj 1194 9 tissue tissue NN cord-000248-zueoyesj 1194 10 biomarker biomarker NN cord-000248-zueoyesj 1194 11 for for IN cord-000248-zueoyesj 1194 12 prostate prostate NN cord-000248-zueoyesj 1194 13 cancer cancer NN cord-000248-zueoyesj 1194 14 Prostatic prostatic JJ cord-000248-zueoyesj 1194 15 ductal ductal JJ cord-000248-zueoyesj 1194 16 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1194 17 presenting present VBG cord-000248-zueoyesj 1194 18 as as IN cord-000248-zueoyesj 1194 19 a a DT cord-000248-zueoyesj 1194 20 urethral urethral JJ cord-000248-zueoyesj 1194 21 polyp polyp NN cord-000248-zueoyesj 1194 22 : : : cord-000248-zueoyesj 1194 23 a a DT cord-000248-zueoyesj 1194 24 clinicopathological clinicopathological JJ cord-000248-zueoyesj 1194 25 study study NN cord-000248-zueoyesj 1194 26 of of IN cord-000248-zueoyesj 1194 27 eight eight CD cord-000248-zueoyesj 1194 28 cases case NNS cord-000248-zueoyesj 1194 29 of of IN cord-000248-zueoyesj 1194 30 a a DT cord-000248-zueoyesj 1194 31 lesion lesion NN cord-000248-zueoyesj 1194 32 with with IN cord-000248-zueoyesj 1194 33 the the DT cord-000248-zueoyesj 1194 34 potential potential NN cord-000248-zueoyesj 1194 35 to to TO cord-000248-zueoyesj 1194 36 be be VB cord-000248-zueoyesj 1194 37 misdiagnosed misdiagnose VBN cord-000248-zueoyesj 1194 38 as as IN cord-000248-zueoyesj 1194 39 a a DT cord-000248-zueoyesj 1194 40 benign benign JJ cord-000248-zueoyesj 1194 41 prostatic prostatic JJ cord-000248-zueoyesj 1194 42 urethral urethral JJ cord-000248-zueoyesj 1194 43 polyp polyp NN cord-000248-zueoyesj 1194 44 ) ) -RRB- cord-000248-zueoyesj 1194 45 alpha alpha NN cord-000248-zueoyesj 1194 46 - - HYPH cord-000248-zueoyesj 1194 47 Methylacyl Methylacyl NNP cord-000248-zueoyesj 1194 48 coenzyme coenzyme VBZ cord-000248-zueoyesj 1194 49 A a DT cord-000248-zueoyesj 1194 50 racemase racemase NN cord-000248-zueoyesj 1194 51 , , , cord-000248-zueoyesj 1194 52 Ki-67 Ki-67 NNP cord-000248-zueoyesj 1194 53 , , , cord-000248-zueoyesj 1194 54 and and CC cord-000248-zueoyesj 1194 55 topoisomerase topoisomerase NN cord-000248-zueoyesj 1194 56 IIalpha IIalpha NNP cord-000248-zueoyesj 1194 57 in in IN cord-000248-zueoyesj 1194 58 cystoprostatectomies cystoprostatectomie NNS cord-000248-zueoyesj 1194 59 with with IN cord-000248-zueoyesj 1194 60 incidental incidental JJ cord-000248-zueoyesj 1194 61 prostate prostate NN cord-000248-zueoyesj 1194 62 cancer cancer NN cord-000248-zueoyesj 1194 63 Emerging emerge VBG cord-000248-zueoyesj 1194 64 biomarkers biomarker NNS cord-000248-zueoyesj 1194 65 for for IN cord-000248-zueoyesj 1194 66 the the DT cord-000248-zueoyesj 1194 67 diagnosis diagnosis NN cord-000248-zueoyesj 1194 68 and and CC cord-000248-zueoyesj 1194 69 prognosis prognosis NN cord-000248-zueoyesj 1194 70 of of IN cord-000248-zueoyesj 1194 71 prostate prostate NN cord-000248-zueoyesj 1194 72 cancer cancer NN cord-000248-zueoyesj 1194 73 Extraction extraction NN cord-000248-zueoyesj 1194 74 and and CC cord-000248-zueoyesj 1194 75 processing processing NN cord-000248-zueoyesj 1194 76 of of IN cord-000248-zueoyesj 1194 77 high high JJ cord-000248-zueoyesj 1194 78 quality quality NN cord-000248-zueoyesj 1194 79 RNA RNA NNP cord-000248-zueoyesj 1194 80 from from IN cord-000248-zueoyesj 1194 81 impalpable impalpable JJ cord-000248-zueoyesj 1194 82 and and CC cord-000248-zueoyesj 1194 83 macroscopically macroscopically RB cord-000248-zueoyesj 1194 84 invisible invisible JJ cord-000248-zueoyesj 1194 85 prostate prostate NN cord-000248-zueoyesj 1194 86 cancer cancer NN cord-000248-zueoyesj 1194 87 for for IN cord-000248-zueoyesj 1194 88 microarray microarray NN cord-000248-zueoyesj 1194 89 gene gene NN cord-000248-zueoyesj 1194 90 expression expression NN cord-000248-zueoyesj 1194 91 analysis analysis NN cord-000248-zueoyesj 1195 1 Kinetic kinetic JJ cord-000248-zueoyesj 1195 2 fluorescence fluorescence NN cord-000248-zueoyesj 1195 3 reverse reverse NN cord-000248-zueoyesj 1195 4 transcriptase transcriptase NN cord-000248-zueoyesj 1195 5 - - HYPH cord-000248-zueoyesj 1195 6 polymerase polymerase NN cord-000248-zueoyesj 1195 7 chain chain NN cord-000248-zueoyesj 1195 8 reaction reaction NN cord-000248-zueoyesj 1195 9 for for IN cord-000248-zueoyesj 1195 10 alphamethylacyl alphamethylacyl NNP cord-000248-zueoyesj 1195 11 CoA CoA NNP cord-000248-zueoyesj 1195 12 racemase racemase NNP cord-000248-zueoyesj 1196 1 distinguishes distinguish VBZ cord-000248-zueoyesj 1196 2 prostate prostate NN cord-000248-zueoyesj 1196 3 cancer cancer NN cord-000248-zueoyesj 1196 4 from from IN cord-000248-zueoyesj 1196 5 benign benign JJ cord-000248-zueoyesj 1196 6 lesions lesion NNS cord-000248-zueoyesj 1196 7 Expression expression NN cord-000248-zueoyesj 1196 8 profiling profiling NN cord-000248-zueoyesj 1197 1 identifies identify VBZ cord-000248-zueoyesj 1197 2 a a DT cord-000248-zueoyesj 1197 3 novel novel JJ cord-000248-zueoyesj 1197 4 alpha alpha NN cord-000248-zueoyesj 1197 5 - - HYPH cord-000248-zueoyesj 1197 6 methylacyl methylacyl JJ cord-000248-zueoyesj 1197 7 - - HYPH cord-000248-zueoyesj 1197 8 CoA coa NN cord-000248-zueoyesj 1197 9 racemase racemase NN cord-000248-zueoyesj 1197 10 exon exon NN cord-000248-zueoyesj 1197 11 with with IN cord-000248-zueoyesj 1197 12 fumarate fumarate NNP cord-000248-zueoyesj 1197 13 hydratase hydratase NNP cord-000248-zueoyesj 1197 14 homology homology NN cord-000248-zueoyesj 1197 15 Alphamethylacyl Alphamethylacyl NNP cord-000248-zueoyesj 1197 16 CoA coa NN cord-000248-zueoyesj 1197 17 racemase racemase NN cord-000248-zueoyesj 1197 18 in in IN cord-000248-zueoyesj 1197 19 pulmonary pulmonary JJ cord-000248-zueoyesj 1197 20 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1197 21 , , , cord-000248-zueoyesj 1197 22 squamous squamous JJ cord-000248-zueoyesj 1197 23 cell cell NN cord-000248-zueoyesj 1197 24 carcinoma carcinoma NN cord-000248-zueoyesj 1197 25 , , , cord-000248-zueoyesj 1197 26 and and CC cord-000248-zueoyesj 1197 27 neuroendocrine neuroendocrine JJ cord-000248-zueoyesj 1197 28 tumors tumor NNS cord-000248-zueoyesj 1197 29 : : : cord-000248-zueoyesj 1197 30 expression expression NN cord-000248-zueoyesj 1197 31 and and CC cord-000248-zueoyesj 1197 32 survival survival NN cord-000248-zueoyesj 1197 33 analysis analysis NN cord-000248-zueoyesj 1197 34 Isolation isolation NN cord-000248-zueoyesj 1197 35 of of IN cord-000248-zueoyesj 1197 36 human human JJ cord-000248-zueoyesj 1197 37 prostatic prostatic JJ cord-000248-zueoyesj 1197 38 epithelial epithelial JJ cord-000248-zueoyesj 1197 39 plasma plasma NN cord-000248-zueoyesj 1197 40 membranes membrane NNS cord-000248-zueoyesj 1197 41 for for IN cord-000248-zueoyesj 1197 42 proteomics proteomic NNS cord-000248-zueoyesj 1197 43 using use VBG cord-000248-zueoyesj 1197 44 mirror mirror NN cord-000248-zueoyesj 1197 45 image image NN cord-000248-zueoyesj 1197 46 tissue tissue NN cord-000248-zueoyesj 1197 47 banking banking NN cord-000248-zueoyesj 1197 48 of of IN cord-000248-zueoyesj 1197 49 radical radical JJ cord-000248-zueoyesj 1197 50 prostatectomy prostatectomy NN cord-000248-zueoyesj 1197 51 specimens specimen NNS cord-000248-zueoyesj 1197 52 Expression expression NN cord-000248-zueoyesj 1197 53 of of IN cord-000248-zueoyesj 1197 54 alphamethylacyl alphamethylacyl JJ cord-000248-zueoyesj 1197 55 - - HYPH cord-000248-zueoyesj 1197 56 CoA coa NN cord-000248-zueoyesj 1197 57 racemase racemase NN cord-000248-zueoyesj 1197 58 ( ( -LRB- cord-000248-zueoyesj 1197 59 P504S P504S NNP cord-000248-zueoyesj 1197 60 ) ) -RRB- cord-000248-zueoyesj 1197 61 in in IN cord-000248-zueoyesj 1197 62 nephrogenic nephrogenic JJ cord-000248-zueoyesj 1197 63 adenoma adenoma NN cord-000248-zueoyesj 1197 64 : : : cord-000248-zueoyesj 1198 1 a a DT cord-000248-zueoyesj 1198 2 significant significant JJ cord-000248-zueoyesj 1198 3 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1198 4 pitfall pitfall NN cord-000248-zueoyesj 1198 5 compounding compound VBG cord-000248-zueoyesj 1198 6 the the DT cord-000248-zueoyesj 1198 7 differential differential JJ cord-000248-zueoyesj 1198 8 diagnosis diagnosis NN cord-000248-zueoyesj 1198 9 with with IN cord-000248-zueoyesj 1198 10 prostatic prostatic JJ cord-000248-zueoyesj 1198 11 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1198 12 Oct4A oct4a NN cord-000248-zueoyesj 1198 13 is be VBZ cord-000248-zueoyesj 1198 14 expressed express VBN cord-000248-zueoyesj 1198 15 by by IN cord-000248-zueoyesj 1198 16 a a DT cord-000248-zueoyesj 1198 17 subpopulation subpopulation NN cord-000248-zueoyesj 1198 18 of of IN cord-000248-zueoyesj 1198 19 prostate prostate NN cord-000248-zueoyesj 1198 20 neuroendocrine neuroendocrine JJ cord-000248-zueoyesj 1198 21 cells cell NNS cord-000248-zueoyesj 1199 1 Humoral Humoral NNP cord-000248-zueoyesj 1199 2 immune immune JJ cord-000248-zueoyesj 1199 3 response response NN cord-000248-zueoyesj 1199 4 to to IN cord-000248-zueoyesj 1199 5 alpha alpha JJ cord-000248-zueoyesj 1199 6 - - HYPH cord-000248-zueoyesj 1199 7 methylacyl methylacyl JJ cord-000248-zueoyesj 1199 8 - - HYPH cord-000248-zueoyesj 1199 9 CoA coa NN cord-000248-zueoyesj 1199 10 racemase racemase NN cord-000248-zueoyesj 1199 11 and and CC cord-000248-zueoyesj 1199 12 prostate prostate NN cord-000248-zueoyesj 1199 13 cancer cancer NN cord-000248-zueoyesj 1199 14 Comparison comparison NN cord-000248-zueoyesj 1199 15 of of IN cord-000248-zueoyesj 1199 16 annexin annexin NNP cord-000248-zueoyesj 1199 17 II II NNP cord-000248-zueoyesj 1199 18 , , , cord-000248-zueoyesj 1199 19 p63 p63 NN cord-000248-zueoyesj 1199 20 and and CC cord-000248-zueoyesj 1199 21 alpha alpha NN cord-000248-zueoyesj 1199 22 - - HYPH cord-000248-zueoyesj 1199 23 methylacyl methylacyl JJ cord-000248-zueoyesj 1199 24 - - HYPH cord-000248-zueoyesj 1199 25 CoA coa NN cord-000248-zueoyesj 1199 26 racemase racemase NN cord-000248-zueoyesj 1199 27 immunoreactivity immunoreactivity NN cord-000248-zueoyesj 1199 28 in in IN cord-000248-zueoyesj 1199 29 prostatic prostatic JJ cord-000248-zueoyesj 1199 30 tissue tissue NN cord-000248-zueoyesj 1199 31 : : : cord-000248-zueoyesj 1199 32 a a DT cord-000248-zueoyesj 1199 33 tissue tissue NN cord-000248-zueoyesj 1199 34 microarray microarray NN cord-000248-zueoyesj 1199 35 study study NN cord-000248-zueoyesj 1199 36 Ancillary ancillary JJ cord-000248-zueoyesj 1199 37 alpha alpha NN cord-000248-zueoyesj 1199 38 - - HYPH cord-000248-zueoyesj 1199 39 methylacyl methylacyl JJ cord-000248-zueoyesj 1199 40 - - HYPH cord-000248-zueoyesj 1199 41 CoA coa NN cord-000248-zueoyesj 1199 42 racemase racemase NN cord-000248-zueoyesj 1199 43 immunocytochemistry immunocytochemistry NN cord-000248-zueoyesj 1199 44 in in IN cord-000248-zueoyesj 1199 45 the the DT cord-000248-zueoyesj 1199 46 diagnosis diagnosis NN cord-000248-zueoyesj 1199 47 of of IN cord-000248-zueoyesj 1199 48 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1199 49 of of IN cord-000248-zueoyesj 1199 50 the the DT cord-000248-zueoyesj 1199 51 prostate prostate NN cord-000248-zueoyesj 1199 52 in in IN cord-000248-zueoyesj 1199 53 urinary urinary JJ cord-000248-zueoyesj 1199 54 cytology cytology NN cord-000248-zueoyesj 1199 55 : : : cord-000248-zueoyesj 1200 1 a a DT cord-000248-zueoyesj 1200 2 case case NN cord-000248-zueoyesj 1200 3 report report NN cord-000248-zueoyesj 1200 4 Alpha alpha NN cord-000248-zueoyesj 1200 5 - - HYPH cord-000248-zueoyesj 1200 6 methylacyl methylacyl JJ cord-000248-zueoyesj 1200 7 - - HYPH cord-000248-zueoyesj 1200 8 CoA coa NN cord-000248-zueoyesj 1200 9 racemase racemase NN cord-000248-zueoyesj 1201 1 ( ( -LRB- cord-000248-zueoyesj 1201 2 P504S)/34betaE12 P504S)/34betaE12 NNP cord-000248-zueoyesj 1201 3 / / SYM cord-000248-zueoyesj 1201 4 p63 p63 CD cord-000248-zueoyesj 1201 5 triple triple JJ cord-000248-zueoyesj 1201 6 cocktail cocktail NN cord-000248-zueoyesj 1201 7 stain stain NN cord-000248-zueoyesj 1201 8 in in IN cord-000248-zueoyesj 1201 9 prostatic prostatic JJ cord-000248-zueoyesj 1201 10 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1201 11 after after IN cord-000248-zueoyesj 1201 12 hormonal hormonal JJ cord-000248-zueoyesj 1201 13 therapy therapy NN cord-000248-zueoyesj 1201 14 Differences difference NNS cord-000248-zueoyesj 1201 15 between between IN cord-000248-zueoyesj 1201 16 latent latent JJ cord-000248-zueoyesj 1201 17 and and CC cord-000248-zueoyesj 1201 18 clinical clinical JJ cord-000248-zueoyesj 1201 19 prostate prostate NN cord-000248-zueoyesj 1201 20 carcinomas carcinoma NNS cord-000248-zueoyesj 1201 21 : : : cord-000248-zueoyesj 1202 1 lower low JJR cord-000248-zueoyesj 1202 2 cell cell NN cord-000248-zueoyesj 1202 3 proliferation proliferation NN cord-000248-zueoyesj 1202 4 activity activity NN cord-000248-zueoyesj 1202 5 in in IN cord-000248-zueoyesj 1202 6 latent latent JJ cord-000248-zueoyesj 1202 7 cases case NNS cord-000248-zueoyesj 1202 8 Variation variation NN cord-000248-zueoyesj 1202 9 of of IN cord-000248-zueoyesj 1202 10 alpha alpha JJ cord-000248-zueoyesj 1202 11 - - HYPH cord-000248-zueoyesj 1202 12 methylacyl methylacyl JJ cord-000248-zueoyesj 1202 13 - - HYPH cord-000248-zueoyesj 1202 14 CoA coa NN cord-000248-zueoyesj 1202 15 racemase racemase NN cord-000248-zueoyesj 1202 16 expression expression NN cord-000248-zueoyesj 1202 17 in in IN cord-000248-zueoyesj 1202 18 prostate prostate NN cord-000248-zueoyesj 1202 19 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1202 20 cases case NNS cord-000248-zueoyesj 1202 21 receiving receive VBG cord-000248-zueoyesj 1202 22 hormonal hormonal JJ cord-000248-zueoyesj 1202 23 therapy therapy NN cord-000248-zueoyesj 1202 24 Phytanic Phytanic NNP cord-000248-zueoyesj 1202 25 acid acid NN cord-000248-zueoyesj 1202 26 , , , cord-000248-zueoyesj 1202 27 AMACR AMACR NNP cord-000248-zueoyesj 1202 28 and and CC cord-000248-zueoyesj 1202 29 prostate prostate NN cord-000248-zueoyesj 1203 1 cancer cancer NN cord-000248-zueoyesj 1203 2 risk risk NN cord-000248-zueoyesj 1204 1 Transcriptome Transcriptome NNP cord-000248-zueoyesj 1204 2 analysis analysis NN cord-000248-zueoyesj 1204 3 of of IN cord-000248-zueoyesj 1204 4 human human JJ cord-000248-zueoyesj 1204 5 colon colon NN cord-000248-zueoyesj 1204 6 Caco-2 caco-2 NN cord-000248-zueoyesj 1204 7 cells cell NNS cord-000248-zueoyesj 1204 8 exposed expose VBN cord-000248-zueoyesj 1204 9 to to IN cord-000248-zueoyesj 1204 10 sulforaphane sulforaphane NNP cord-000248-zueoyesj 1204 11 Expression Expression NNP cord-000248-zueoyesj 1204 12 of of IN cord-000248-zueoyesj 1204 13 alpha alpha JJ cord-000248-zueoyesj 1204 14 - - HYPH cord-000248-zueoyesj 1204 15 methylacyl methylacyl JJ cord-000248-zueoyesj 1204 16 - - HYPH cord-000248-zueoyesj 1204 17 CoA coa NN cord-000248-zueoyesj 1204 18 racemase racemase NN cord-000248-zueoyesj 1204 19 in in IN cord-000248-zueoyesj 1204 20 papillary papillary JJ cord-000248-zueoyesj 1204 21 renal renal JJ cord-000248-zueoyesj 1204 22 cell cell NN cord-000248-zueoyesj 1204 23 carcinoma carcinoma NN cord-000248-zueoyesj 1204 24 Alpha Alpha NNP cord-000248-zueoyesj 1204 25 - - HYPH cord-000248-zueoyesj 1204 26 Methylacyl Methylacyl NNP cord-000248-zueoyesj 1204 27 - - HYPH cord-000248-zueoyesj 1204 28 CoA CoA NNP cord-000248-zueoyesj 1204 29 Racemase Racemase NNP cord-000248-zueoyesj 1204 30 Expression Expression NNP cord-000248-zueoyesj 1204 31 is be VBZ cord-000248-zueoyesj 1204 32 Upregulated upregulate VBN cord-000248-zueoyesj 1204 33 in in IN cord-000248-zueoyesj 1204 34 Gastric Gastric NNP cord-000248-zueoyesj 1204 35 Adenocarcinoma Adenocarcinoma NNP cord-000248-zueoyesj 1204 36 : : : cord-000248-zueoyesj 1205 1 A a DT cord-000248-zueoyesj 1205 2 Study Study NNP cord-000248-zueoyesj 1205 3 of of IN cord-000248-zueoyesj 1205 4 249 249 CD cord-000248-zueoyesj 1205 5 Cases case NNS cord-000248-zueoyesj 1205 6 Sensitivity sensitivity NN cord-000248-zueoyesj 1205 7 of of IN cord-000248-zueoyesj 1205 8 P504S P504S NNP cord-000248-zueoyesj 1205 9 / / SYM cord-000248-zueoyesj 1205 10 alpha alpha JJ cord-000248-zueoyesj 1205 11 - - HYPH cord-000248-zueoyesj 1205 12 methylacyl methylacyl JJ cord-000248-zueoyesj 1205 13 - - HYPH cord-000248-zueoyesj 1205 14 CoA coa NN cord-000248-zueoyesj 1205 15 racemase racemase NN cord-000248-zueoyesj 1205 16 ( ( -LRB- cord-000248-zueoyesj 1205 17 AMACR AMACR NNP cord-000248-zueoyesj 1205 18 ) ) -RRB- cord-000248-zueoyesj 1205 19 immunohistochemistry immunohistochemistry NN cord-000248-zueoyesj 1205 20 for for IN cord-000248-zueoyesj 1205 21 the the DT cord-000248-zueoyesj 1205 22 detection detection NN cord-000248-zueoyesj 1205 23 of of IN cord-000248-zueoyesj 1205 24 prostate prostate NN cord-000248-zueoyesj 1205 25 carcinoma carcinoma NN cord-000248-zueoyesj 1205 26 on on IN cord-000248-zueoyesj 1205 27 stored store VBN cord-000248-zueoyesj 1205 28 needle needle NN cord-000248-zueoyesj 1205 29 biopsies biopsy NNS cord-000248-zueoyesj 1205 30 Diagnostic diagnostic JJ cord-000248-zueoyesj 1205 31 utility utility NN cord-000248-zueoyesj 1205 32 of of IN cord-000248-zueoyesj 1205 33 immunohistochemistry immunohistochemistry NN cord-000248-zueoyesj 1205 34 in in IN cord-000248-zueoyesj 1205 35 morphologically morphologically RB cord-000248-zueoyesj 1205 36 difficult difficult JJ cord-000248-zueoyesj 1205 37 prostate prostate NN cord-000248-zueoyesj 1205 38 cancer cancer NN cord-000248-zueoyesj 1205 39 : : : cord-000248-zueoyesj 1205 40 review review NN cord-000248-zueoyesj 1205 41 of of IN cord-000248-zueoyesj 1205 42 current current JJ cord-000248-zueoyesj 1205 43 literature literature NN cord-000248-zueoyesj 1206 1 The the DT cord-000248-zueoyesj 1206 2 prostate prostate NN cord-000248-zueoyesj 1206 3 - - HYPH cord-000248-zueoyesj 1206 4 specific specific JJ cord-000248-zueoyesj 1206 5 G g NN cord-000248-zueoyesj 1206 6 - - HYPH cord-000248-zueoyesj 1206 7 protein protein NN cord-000248-zueoyesj 1206 8 coupled coupled JJ cord-000248-zueoyesj 1206 9 receptors receptor NNS cord-000248-zueoyesj 1206 10 PSGR PSGR NNP cord-000248-zueoyesj 1206 11 and and CC cord-000248-zueoyesj 1206 12 PSGR2 PSGR2 NNS cord-000248-zueoyesj 1206 13 are be VBP cord-000248-zueoyesj 1206 14 prostate prostate NN cord-000248-zueoyesj 1206 15 cancer cancer NN cord-000248-zueoyesj 1206 16 biomarkers biomarker NNS cord-000248-zueoyesj 1206 17 that that WDT cord-000248-zueoyesj 1206 18 are be VBP cord-000248-zueoyesj 1206 19 complementary complementary JJ cord-000248-zueoyesj 1206 20 to to IN cord-000248-zueoyesj 1206 21 alpha alpha JJ cord-000248-zueoyesj 1206 22 - - HYPH cord-000248-zueoyesj 1206 23 methylacyl methylacyl JJ cord-000248-zueoyesj 1206 24 - - HYPH cord-000248-zueoyesj 1206 25 CoA coa NN cord-000248-zueoyesj 1206 26 racemase racemase NN cord-000248-zueoyesj 1206 27 Partial partial JJ cord-000248-zueoyesj 1206 28 atrophy atrophy NN cord-000248-zueoyesj 1206 29 on on IN cord-000248-zueoyesj 1206 30 prostate prostate NN cord-000248-zueoyesj 1206 31 needle needle NN cord-000248-zueoyesj 1206 32 biopsy biopsy NN cord-000248-zueoyesj 1206 33 cores core NNS cord-000248-zueoyesj 1206 34 : : : cord-000248-zueoyesj 1207 1 a a DT cord-000248-zueoyesj 1207 2 morphologic morphologic JJ cord-000248-zueoyesj 1207 3 and and CC cord-000248-zueoyesj 1207 4 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1207 5 study study NN cord-000248-zueoyesj 1207 6 Abundant abundant JJ cord-000248-zueoyesj 1207 7 expression expression NN cord-000248-zueoyesj 1207 8 of of IN cord-000248-zueoyesj 1207 9 AMACR AMACR NNP cord-000248-zueoyesj 1207 10 in in IN cord-000248-zueoyesj 1207 11 many many JJ cord-000248-zueoyesj 1207 12 distinct distinct JJ cord-000248-zueoyesj 1207 13 tumour tumour NN cord-000248-zueoyesj 1207 14 types type NNS cord-000248-zueoyesj 1207 15 Peroxisomal Peroxisomal NNP cord-000248-zueoyesj 1207 16 disorders disorder NNS cord-000248-zueoyesj 1207 17 affecting affect VBG cord-000248-zueoyesj 1207 18 phytanic phytanic NNP cord-000248-zueoyesj 1207 19 acid acid NN cord-000248-zueoyesj 1207 20 alphaoxidation alphaoxidation NN cord-000248-zueoyesj 1207 21 : : : cord-000248-zueoyesj 1207 22 a a DT cord-000248-zueoyesj 1207 23 review review NN cord-000248-zueoyesj 1207 24 Alpha alpha NN cord-000248-zueoyesj 1207 25 - - HYPH cord-000248-zueoyesj 1207 26 methylacyl methylacyl JJ cord-000248-zueoyesj 1207 27 - - HYPH cord-000248-zueoyesj 1207 28 CoA coa NN cord-000248-zueoyesj 1207 29 racemase racemase NN cord-000248-zueoyesj 1207 30 protein protein NN cord-000248-zueoyesj 1207 31 expression expression NN cord-000248-zueoyesj 1207 32 is be VBZ cord-000248-zueoyesj 1207 33 associated associate VBN cord-000248-zueoyesj 1207 34 with with IN cord-000248-zueoyesj 1207 35 the the DT cord-000248-zueoyesj 1207 36 degree degree NN cord-000248-zueoyesj 1207 37 of of IN cord-000248-zueoyesj 1207 38 differentiation differentiation NN cord-000248-zueoyesj 1207 39 in in IN cord-000248-zueoyesj 1207 40 breast breast NN cord-000248-zueoyesj 1207 41 cancer cancer NN cord-000248-zueoyesj 1207 42 using use VBG cord-000248-zueoyesj 1207 43 quantitative quantitative JJ cord-000248-zueoyesj 1207 44 image image NN cord-000248-zueoyesj 1207 45 analysis analysis NN cord-000248-zueoyesj 1207 46 Analysis Analysis NNP cord-000248-zueoyesj 1207 47 of of IN cord-000248-zueoyesj 1207 48 alpha alpha JJ cord-000248-zueoyesj 1207 49 - - HYPH cord-000248-zueoyesj 1207 50 methylacyl methylacyl JJ cord-000248-zueoyesj 1207 51 - - HYPH cord-000248-zueoyesj 1207 52 CoA coa NN cord-000248-zueoyesj 1207 53 racemase racemase NN cord-000248-zueoyesj 1207 54 ( ( -LRB- cord-000248-zueoyesj 1207 55 P504S P504S NNP cord-000248-zueoyesj 1207 56 ) ) -RRB- cord-000248-zueoyesj 1207 57 expression expression NN cord-000248-zueoyesj 1207 58 in in IN cord-000248-zueoyesj 1207 59 high high JJ cord-000248-zueoyesj 1207 60 - - HYPH cord-000248-zueoyesj 1207 61 grade grade NN cord-000248-zueoyesj 1207 62 prostatic prostatic JJ cord-000248-zueoyesj 1207 63 intraepithelial intraepithelial JJ cord-000248-zueoyesj 1207 64 neoplasia neoplasia NN cord-000248-zueoyesj 1207 65 Serum serum NN cord-000248-zueoyesj 1207 66 levels level NNS cord-000248-zueoyesj 1207 67 of of IN cord-000248-zueoyesj 1207 68 phytanic phytanic NN cord-000248-zueoyesj 1207 69 acid acid NN cord-000248-zueoyesj 1207 70 are be VBP cord-000248-zueoyesj 1207 71 associated associate VBN cord-000248-zueoyesj 1207 72 with with IN cord-000248-zueoyesj 1208 1 prostate prostate NN cord-000248-zueoyesj 1208 2 cancer cancer NN cord-000248-zueoyesj 1208 3 risk risk NN cord-000248-zueoyesj 1208 4 Detection Detection NNP cord-000248-zueoyesj 1208 5 of of IN cord-000248-zueoyesj 1208 6 alpha alpha JJ cord-000248-zueoyesj 1208 7 - - HYPH cord-000248-zueoyesj 1208 8 methylacyl methylacyl NN cord-000248-zueoyesj 1208 9 - - HYPH cord-000248-zueoyesj 1208 10 coenzyme coenzyme VBZ cord-000248-zueoyesj 1208 11 A a DT cord-000248-zueoyesj 1208 12 racemase racemase NN cord-000248-zueoyesj 1208 13 in in IN cord-000248-zueoyesj 1208 14 postradiation postradiation NN cord-000248-zueoyesj 1208 15 prostatic prostatic JJ cord-000248-zueoyesj 1208 16 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1208 17 Tumor tumor NN cord-000248-zueoyesj 1208 18 suppressor suppressor NN cord-000248-zueoyesj 1208 19 activity activity NN cord-000248-zueoyesj 1208 20 of of IN cord-000248-zueoyesj 1208 21 glucocorticoid glucocorticoid NN cord-000248-zueoyesj 1208 22 receptor receptor NN cord-000248-zueoyesj 1208 23 in in IN cord-000248-zueoyesj 1208 24 the the DT cord-000248-zueoyesj 1208 25 prostate prostate NN cord-000248-zueoyesj 1208 26 Detection detection NN cord-000248-zueoyesj 1208 27 of of IN cord-000248-zueoyesj 1208 28 alpha alpha JJ cord-000248-zueoyesj 1208 29 - - HYPH cord-000248-zueoyesj 1208 30 methylacyl methylacyl JJ cord-000248-zueoyesj 1208 31 - - HYPH cord-000248-zueoyesj 1208 32 coenzyme coenzyme NN cord-000248-zueoyesj 1208 33 - - HYPH cord-000248-zueoyesj 1208 34 A a NN cord-000248-zueoyesj 1208 35 racemase racemase NN cord-000248-zueoyesj 1208 36 transcripts transcript NNS cord-000248-zueoyesj 1208 37 in in IN cord-000248-zueoyesj 1208 38 blood blood NN cord-000248-zueoyesj 1208 39 and and CC cord-000248-zueoyesj 1208 40 urine urine NN cord-000248-zueoyesj 1208 41 samples sample NNS cord-000248-zueoyesj 1208 42 of of IN cord-000248-zueoyesj 1208 43 prostate prostate NN cord-000248-zueoyesj 1208 44 cancer cancer NN cord-000248-zueoyesj 1208 45 patients patient NNS cord-000248-zueoyesj 1208 46 Alphamethylacyl Alphamethylacyl NNP cord-000248-zueoyesj 1208 47 - - HYPH cord-000248-zueoyesj 1208 48 CoA coa NN cord-000248-zueoyesj 1208 49 racemase racemase NN cord-000248-zueoyesj 1208 50 as as IN cord-000248-zueoyesj 1208 51 an an DT cord-000248-zueoyesj 1208 52 androgen androgen NN cord-000248-zueoyesj 1208 53 - - HYPH cord-000248-zueoyesj 1208 54 independent independent JJ cord-000248-zueoyesj 1208 55 growth growth NN cord-000248-zueoyesj 1208 56 modifier modifier NN cord-000248-zueoyesj 1208 57 in in IN cord-000248-zueoyesj 1208 58 prostate prostate NN cord-000248-zueoyesj 1208 59 cancer cancer NN cord-000248-zueoyesj 1208 60 Peroxisomal Peroxisomal NNP cord-000248-zueoyesj 1208 61 branched branch VBD cord-000248-zueoyesj 1208 62 chain chain NN cord-000248-zueoyesj 1208 63 fatty fatty JJ cord-000248-zueoyesj 1208 64 acid acid NN cord-000248-zueoyesj 1208 65 beta beta NN cord-000248-zueoyesj 1208 66 - - HYPH cord-000248-zueoyesj 1208 67 oxidation oxidation NN cord-000248-zueoyesj 1208 68 pathway pathway NN cord-000248-zueoyesj 1208 69 is be VBZ cord-000248-zueoyesj 1208 70 upregulated upregulate VBN cord-000248-zueoyesj 1208 71 in in IN cord-000248-zueoyesj 1208 72 prostate prostate NN cord-000248-zueoyesj 1208 73 cancer cancer NN cord-000248-zueoyesj 1208 74 A a NN cord-000248-zueoyesj 1209 1 nonclassic nonclassic NNP cord-000248-zueoyesj 1209 2 CCAAT CCAAT NNP cord-000248-zueoyesj 1209 3 enhancer enhancer NN cord-000248-zueoyesj 1209 4 element element NN cord-000248-zueoyesj 1209 5 binding bind VBG cord-000248-zueoyesj 1209 6 protein protein NN cord-000248-zueoyesj 1209 7 binding bind VBG cord-000248-zueoyesj 1209 8 site site NN cord-000248-zueoyesj 1209 9 contributes contribute VBZ cord-000248-zueoyesj 1209 10 to to IN cord-000248-zueoyesj 1209 11 alpha alpha NN cord-000248-zueoyesj 1209 12 - - HYPH cord-000248-zueoyesj 1209 13 methylacyl methylacyl JJ cord-000248-zueoyesj 1209 14 - - HYPH cord-000248-zueoyesj 1209 15 CoA coa NN cord-000248-zueoyesj 1209 16 racemase racemase NN cord-000248-zueoyesj 1209 17 expression expression NN cord-000248-zueoyesj 1209 18 in in IN cord-000248-zueoyesj 1209 19 prostate prostate NN cord-000248-zueoyesj 1209 20 cancer cancer NN cord-000248-zueoyesj 1209 21 Sequence sequence NN cord-000248-zueoyesj 1209 22 variants variant NNS cord-000248-zueoyesj 1209 23 of of IN cord-000248-zueoyesj 1209 24 alpha alpha JJ cord-000248-zueoyesj 1209 25 - - HYPH cord-000248-zueoyesj 1209 26 methylacyl methylacyl JJ cord-000248-zueoyesj 1209 27 - - HYPH cord-000248-zueoyesj 1209 28 CoA coa NN cord-000248-zueoyesj 1209 29 racemase racemase NN cord-000248-zueoyesj 1209 30 are be VBP cord-000248-zueoyesj 1209 31 associated associate VBN cord-000248-zueoyesj 1209 32 with with IN cord-000248-zueoyesj 1209 33 prostate prostate NN cord-000248-zueoyesj 1209 34 cancer cancer NN cord-000248-zueoyesj 1209 35 risk risk NN cord-000248-zueoyesj 1209 36 How how WRB cord-000248-zueoyesj 1209 37 often often RB cord-000248-zueoyesj 1209 38 does do VBZ cord-000248-zueoyesj 1209 39 alphamethylacyl alphamethylacyl JJ cord-000248-zueoyesj 1209 40 - - HYPH cord-000248-zueoyesj 1209 41 CoA coa NN cord-000248-zueoyesj 1209 42 - - HYPH cord-000248-zueoyesj 1209 43 racemase racemase NN cord-000248-zueoyesj 1209 44 contribute contribute NN cord-000248-zueoyesj 1209 45 to to IN cord-000248-zueoyesj 1209 46 resolving resolve VBG cord-000248-zueoyesj 1209 47 an an DT cord-000248-zueoyesj 1209 48 atypical atypical JJ cord-000248-zueoyesj 1209 49 diagnosis diagnosis NN cord-000248-zueoyesj 1209 50 on on IN cord-000248-zueoyesj 1209 51 prostate prostate NN cord-000248-zueoyesj 1209 52 needle needle NN cord-000248-zueoyesj 1209 53 biopsy biopsy NN cord-000248-zueoyesj 1209 54 beyond beyond IN cord-000248-zueoyesj 1209 55 that that DT cord-000248-zueoyesj 1209 56 provided provide VBN cord-000248-zueoyesj 1209 57 by by IN cord-000248-zueoyesj 1209 58 basal basal NN cord-000248-zueoyesj 1209 59 cell cell NN cord-000248-zueoyesj 1209 60 markers marker NNS cord-000248-zueoyesj 1209 61 ? ? . cord-000248-zueoyesj 1210 1 Alpha Alpha NNP cord-000248-zueoyesj 1210 2 - - HYPH cord-000248-zueoyesj 1210 3 Methylacyl Methylacyl NNP cord-000248-zueoyesj 1210 4 - - HYPH cord-000248-zueoyesj 1210 5 CoA CoA NNP cord-000248-zueoyesj 1210 6 racemase racemase NN cord-000248-zueoyesj 1210 7 : : : cord-000248-zueoyesj 1210 8 a a DT cord-000248-zueoyesj 1210 9 novel novel JJ cord-000248-zueoyesj 1210 10 tumor tumor NN cord-000248-zueoyesj 1210 11 marker marker NN cord-000248-zueoyesj 1210 12 over over RB cord-000248-zueoyesj 1210 13 - - HYPH cord-000248-zueoyesj 1210 14 expressed express VBN cord-000248-zueoyesj 1210 15 in in IN cord-000248-zueoyesj 1210 16 several several JJ cord-000248-zueoyesj 1210 17 human human JJ cord-000248-zueoyesj 1210 18 cancers cancer NNS cord-000248-zueoyesj 1210 19 and and CC cord-000248-zueoyesj 1210 20 their -PRON- PRP$ cord-000248-zueoyesj 1210 21 precursor precursor NN cord-000248-zueoyesj 1210 22 lesions lesion NNS cord-000248-zueoyesj 1210 23 Expression expression NN cord-000248-zueoyesj 1210 24 and and CC cord-000248-zueoyesj 1210 25 diagnostic diagnostic JJ cord-000248-zueoyesj 1210 26 utility utility NN cord-000248-zueoyesj 1210 27 of of IN cord-000248-zueoyesj 1210 28 alphamethylacyl alphamethylacyl JJ cord-000248-zueoyesj 1210 29 - - HYPH cord-000248-zueoyesj 1210 30 CoA coa NN cord-000248-zueoyesj 1210 31 - - HYPH cord-000248-zueoyesj 1210 32 racemase racemase NNP cord-000248-zueoyesj 1210 33 ( ( -LRB- cord-000248-zueoyesj 1210 34 P504S P504S NNP cord-000248-zueoyesj 1210 35 ) ) -RRB- cord-000248-zueoyesj 1210 36 in in IN cord-000248-zueoyesj 1210 37 foamy foamy JJ cord-000248-zueoyesj 1210 38 gland gland NN cord-000248-zueoyesj 1210 39 and and CC cord-000248-zueoyesj 1210 40 pseudohyperplastic pseudohyperplastic JJ cord-000248-zueoyesj 1210 41 prostate prostate NN cord-000248-zueoyesj 1211 1 cancer cancer NN cord-000248-zueoyesj 1211 2 A a DT cord-000248-zueoyesj 1211 3 novel novel JJ cord-000248-zueoyesj 1211 4 diagnostic diagnostic JJ cord-000248-zueoyesj 1211 5 test test NN cord-000248-zueoyesj 1211 6 for for IN cord-000248-zueoyesj 1211 7 prostate prostate NN cord-000248-zueoyesj 1211 8 cancer cancer NN cord-000248-zueoyesj 1211 9 emerges emerge VBZ cord-000248-zueoyesj 1211 10 from from IN cord-000248-zueoyesj 1211 11 the the DT cord-000248-zueoyesj 1211 12 determination determination NN cord-000248-zueoyesj 1211 13 of of IN cord-000248-zueoyesj 1211 14 alphamethylacyl alphamethylacyl NNP cord-000248-zueoyesj 1211 15 - - HYPH cord-000248-zueoyesj 1211 16 coenzyme coenzyme VBZ cord-000248-zueoyesj 1211 17 a a DT cord-000248-zueoyesj 1211 18 racemase racemase NN cord-000248-zueoyesj 1211 19 in in IN cord-000248-zueoyesj 1211 20 prostatic prostatic JJ cord-000248-zueoyesj 1211 21 secretions secretion NNS cord-000248-zueoyesj 1211 22 Deletion deletion NN cord-000248-zueoyesj 1211 23 hotspots hotspot NNS cord-000248-zueoyesj 1211 24 in in IN cord-000248-zueoyesj 1211 25 AMACR AMACR NNP cord-000248-zueoyesj 1211 26 promoter promoter NN cord-000248-zueoyesj 1211 27 CpG CpG NNP cord-000248-zueoyesj 1211 28 island island NNP cord-000248-zueoyesj 1211 29 are be VBP cord-000248-zueoyesj 1211 30 cis cis NNP cord-000248-zueoyesj 1211 31 - - JJ cord-000248-zueoyesj 1211 32 regulatory regulatory JJ cord-000248-zueoyesj 1211 33 elements element NNS cord-000248-zueoyesj 1211 34 controlling control VBG cord-000248-zueoyesj 1211 35 the the DT cord-000248-zueoyesj 1211 36 gene gene NN cord-000248-zueoyesj 1211 37 expression expression NN cord-000248-zueoyesj 1211 38 in in IN cord-000248-zueoyesj 1211 39 the the DT cord-000248-zueoyesj 1211 40 colon colon NN cord-000248-zueoyesj 1211 41 Gene Gene NNP cord-000248-zueoyesj 1211 42 expression expression NN cord-000248-zueoyesj 1211 43 profiles profile NNS cord-000248-zueoyesj 1211 44 in in IN cord-000248-zueoyesj 1211 45 the the DT cord-000248-zueoyesj 1211 46 PC-3 PC-3 NNP cord-000248-zueoyesj 1211 47 human human JJ cord-000248-zueoyesj 1211 48 prostate prostate NN cord-000248-zueoyesj 1211 49 cancer cancer NN cord-000248-zueoyesj 1211 50 cells cell NNS cord-000248-zueoyesj 1211 51 induced induce VBN cord-000248-zueoyesj 1211 52 by by IN cord-000248-zueoyesj 1211 53 NKX3.1 NKX3.1 NNP cord-000248-zueoyesj 1211 54 Usefulness Usefulness NNP cord-000248-zueoyesj 1211 55 of of IN cord-000248-zueoyesj 1211 56 cytokeratin cytokeratin NNP cord-000248-zueoyesj 1211 57 5/6 5/6 CD cord-000248-zueoyesj 1211 58 and and CC cord-000248-zueoyesj 1211 59 AMACR AMACR NNP cord-000248-zueoyesj 1211 60 applied apply VBD cord-000248-zueoyesj 1211 61 as as IN cord-000248-zueoyesj 1211 62 double double JJ cord-000248-zueoyesj 1211 63 sequential sequential JJ cord-000248-zueoyesj 1211 64 immunostains immunostain NNS cord-000248-zueoyesj 1211 65 for for IN cord-000248-zueoyesj 1211 66 diagnostic diagnostic JJ cord-000248-zueoyesj 1211 67 assessment assessment NN cord-000248-zueoyesj 1211 68 of of IN cord-000248-zueoyesj 1211 69 problematic problematic JJ cord-000248-zueoyesj 1211 70 prostate prostate NN cord-000248-zueoyesj 1211 71 specimens specimen NNS cord-000248-zueoyesj 1211 72 Conversion Conversion NNP cord-000248-zueoyesj 1211 73 of of IN cord-000248-zueoyesj 1211 74 prostate prostate NN cord-000248-zueoyesj 1211 75 cancer cancer NN cord-000248-zueoyesj 1211 76 from from IN cord-000248-zueoyesj 1211 77 hormone hormone NN cord-000248-zueoyesj 1211 78 independency independency NN cord-000248-zueoyesj 1211 79 to to IN cord-000248-zueoyesj 1211 80 dependency dependency NN cord-000248-zueoyesj 1211 81 due due IN cord-000248-zueoyesj 1211 82 to to IN cord-000248-zueoyesj 1211 83 AMACR AMACR NNP cord-000248-zueoyesj 1211 84 inhibition inhibition NN cord-000248-zueoyesj 1211 85 : : : cord-000248-zueoyesj 1211 86 involvement involvement NN cord-000248-zueoyesj 1211 87 of of IN cord-000248-zueoyesj 1211 88 increased increase VBN cord-000248-zueoyesj 1211 89 AR AR NNP cord-000248-zueoyesj 1211 90 expression expression NN cord-000248-zueoyesj 1211 91 and and CC cord-000248-zueoyesj 1211 92 decreased decrease VBD cord-000248-zueoyesj 1211 93 IGF1 IGF1 NNP cord-000248-zueoyesj 1211 94 expression expression NN cord-000248-zueoyesj 1211 95 Oct4A oct4a NN cord-000248-zueoyesj 1211 96 is be VBZ cord-000248-zueoyesj 1211 97 expressed express VBN cord-000248-zueoyesj 1211 98 by by IN cord-000248-zueoyesj 1211 99 a a DT cord-000248-zueoyesj 1211 100 subpopulation subpopulation NN cord-000248-zueoyesj 1211 101 of of IN cord-000248-zueoyesj 1211 102 prostate prostate NN cord-000248-zueoyesj 1211 103 neuroendocrine neuroendocrine JJ cord-000248-zueoyesj 1211 104 cells cell NNS cord-000248-zueoyesj 1212 1 A a DT cord-000248-zueoyesj 1212 2 duplex duplex JJ cord-000248-zueoyesj 1212 3 quantitative quantitative JJ cord-000248-zueoyesj 1212 4 polymerase polymerase NN cord-000248-zueoyesj 1212 5 chain chain NN cord-000248-zueoyesj 1212 6 reaction reaction NN cord-000248-zueoyesj 1212 7 assay assay NN cord-000248-zueoyesj 1212 8 based base VBN cord-000248-zueoyesj 1212 9 on on IN cord-000248-zueoyesj 1212 10 quantification quantification NN cord-000248-zueoyesj 1212 11 of of IN cord-000248-zueoyesj 1212 12 alphamethylacyl alphamethylacyl NNP cord-000248-zueoyesj 1212 13 - - HYPH cord-000248-zueoyesj 1212 14 CoA coa NN cord-000248-zueoyesj 1212 15 racemase racemase NN cord-000248-zueoyesj 1212 16 transcripts transcript NNS cord-000248-zueoyesj 1212 17 and and CC cord-000248-zueoyesj 1212 18 prostate prostate NN cord-000248-zueoyesj 1212 19 cancer cancer NN cord-000248-zueoyesj 1212 20 antigen antigen NN cord-000248-zueoyesj 1212 21 3 3 CD cord-000248-zueoyesj 1212 22 in in IN cord-000248-zueoyesj 1212 23 urine urine NN cord-000248-zueoyesj 1212 24 sediments sediment NNS cord-000248-zueoyesj 1212 25 improved improve VBD cord-000248-zueoyesj 1212 26 diagnostic diagnostic JJ cord-000248-zueoyesj 1212 27 accuracy accuracy NN cord-000248-zueoyesj 1212 28 for for IN cord-000248-zueoyesj 1212 29 prostate prostate NN cord-000248-zueoyesj 1212 30 cancer cancer NN cord-000248-zueoyesj 1213 1 A a DT cord-000248-zueoyesj 1213 2 continuous continuous JJ cord-000248-zueoyesj 1213 3 assay assay NN cord-000248-zueoyesj 1213 4 for for IN cord-000248-zueoyesj 1213 5 alpha alpha NN cord-000248-zueoyesj 1213 6 - - HYPH cord-000248-zueoyesj 1213 7 methylacylcoenzyme methylacylcoenzyme NNS cord-000248-zueoyesj 1213 8 A a DT cord-000248-zueoyesj 1213 9 racemase racemase NN cord-000248-zueoyesj 1213 10 using use VBG cord-000248-zueoyesj 1213 11 circular circular JJ cord-000248-zueoyesj 1213 12 dichroism dichroism NNP cord-000248-zueoyesj 1213 13 Group Group NNP cord-000248-zueoyesj 1213 14 IIA IIA NNP cord-000248-zueoyesj 1213 15 phospholipase phospholipase NN cord-000248-zueoyesj 1213 16 A A NNP cord-000248-zueoyesj 1213 17 as as IN cord-000248-zueoyesj 1213 18 a a DT cord-000248-zueoyesj 1213 19 prognostic prognostic JJ cord-000248-zueoyesj 1213 20 marker marker NN cord-000248-zueoyesj 1213 21 in in IN cord-000248-zueoyesj 1213 22 prostate prostate NN cord-000248-zueoyesj 1213 23 cancer cancer NN cord-000248-zueoyesj 1213 24 : : : cord-000248-zueoyesj 1213 25 relevance relevance NN cord-000248-zueoyesj 1213 26 to to IN cord-000248-zueoyesj 1213 27 clinicopathological clinicopathological JJ cord-000248-zueoyesj 1213 28 variables variable NNS cord-000248-zueoyesj 1213 29 and and CC cord-000248-zueoyesj 1213 30 disease disease NN cord-000248-zueoyesj 1213 31 - - HYPH cord-000248-zueoyesj 1213 32 specific specific JJ cord-000248-zueoyesj 1213 33 mortality mortality NN cord-000248-zueoyesj 1213 34 Biomarkers Biomarkers NNPS cord-000248-zueoyesj 1213 35 for for IN cord-000248-zueoyesj 1213 36 prostate prostate NN cord-000248-zueoyesj 1213 37 cancer cancer NN cord-000248-zueoyesj 1214 1 Immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1214 2 algorithms algorithm NNS cord-000248-zueoyesj 1214 3 in in IN cord-000248-zueoyesj 1214 4 prostate prostate NN cord-000248-zueoyesj 1214 5 diagnostics diagnostic NNS cord-000248-zueoyesj 1215 1 : : : cord-000248-zueoyesj 1215 2 What what WP cord-000248-zueoyesj 1215 3 's be VBZ cord-000248-zueoyesj 1215 4 new new JJ cord-000248-zueoyesj 1215 5 ? ? . cord-000248-zueoyesj 1215 6 ] ] -RRB- cord-000248-zueoyesj 1215 7 . . . cord-000248-zueoyesj 1216 1 Pathologe Pathologe NNP cord-000248-zueoyesj 1216 2 Alpha alpha NN cord-000248-zueoyesj 1216 3 - - HYPH cord-000248-zueoyesj 1216 4 methylacyl methylacyl JJ cord-000248-zueoyesj 1216 5 - - HYPH cord-000248-zueoyesj 1216 6 CoA coa NN cord-000248-zueoyesj 1216 7 racemase racemase NN cord-000248-zueoyesj 1216 8 ( ( -LRB- cord-000248-zueoyesj 1216 9 AMACR AMACR NNP cord-000248-zueoyesj 1216 10 ) ) -RRB- cord-000248-zueoyesj 1216 11 in in IN cord-000248-zueoyesj 1216 12 fine fine JJ cord-000248-zueoyesj 1216 13 - - HYPH cord-000248-zueoyesj 1216 14 needle needle NN cord-000248-zueoyesj 1216 15 aspiration aspiration NN cord-000248-zueoyesj 1216 16 specimens specimen NNS cord-000248-zueoyesj 1216 17 of of IN cord-000248-zueoyesj 1216 18 prostate prostate NN cord-000248-zueoyesj 1216 19 lesions lesion NNS cord-000248-zueoyesj 1216 20 Biopsy Biopsy NNP cord-000248-zueoyesj 1216 21 tissue tissue NN cord-000248-zueoyesj 1216 22 microarray microarray NN cord-000248-zueoyesj 1216 23 study study NN cord-000248-zueoyesj 1216 24 of of IN cord-000248-zueoyesj 1216 25 Ki-67 Ki-67 NNP cord-000248-zueoyesj 1216 26 expression expression NN cord-000248-zueoyesj 1216 27 in in IN cord-000248-zueoyesj 1216 28 untreated untreated JJ cord-000248-zueoyesj 1216 29 , , , cord-000248-zueoyesj 1216 30 localized localized JJ cord-000248-zueoyesj 1216 31 prostate prostate NN cord-000248-zueoyesj 1216 32 cancer cancer NN cord-000248-zueoyesj 1216 33 managed manage VBN cord-000248-zueoyesj 1216 34 by by IN cord-000248-zueoyesj 1216 35 active active JJ cord-000248-zueoyesj 1216 36 surveillance surveillance NN cord-000248-zueoyesj 1216 37 Urine urine NN cord-000248-zueoyesj 1216 38 markers marker NNS cord-000248-zueoyesj 1216 39 in in IN cord-000248-zueoyesj 1216 40 monitoring monitoring NN cord-000248-zueoyesj 1216 41 for for IN cord-000248-zueoyesj 1216 42 prostate prostate NN cord-000248-zueoyesj 1216 43 cancer cancer NN cord-000248-zueoyesj 1216 44 Expression expression NN cord-000248-zueoyesj 1216 45 of of IN cord-000248-zueoyesj 1216 46 alpha alpha JJ cord-000248-zueoyesj 1216 47 - - HYPH cord-000248-zueoyesj 1216 48 methylacyl methylacyl JJ cord-000248-zueoyesj 1216 49 - - HYPH cord-000248-zueoyesj 1216 50 CoA coa NN cord-000248-zueoyesj 1216 51 racemase racemase NN cord-000248-zueoyesj 1216 52 ( ( -LRB- cord-000248-zueoyesj 1216 53 P504S P504S NNP cord-000248-zueoyesj 1216 54 ) ) -RRB- cord-000248-zueoyesj 1216 55 in in IN cord-000248-zueoyesj 1216 56 sebaceous sebaceous JJ cord-000248-zueoyesj 1216 57 neoplasms neoplasm NNS cord-000248-zueoyesj 1216 58 Expression expression NN cord-000248-zueoyesj 1216 59 of of IN cord-000248-zueoyesj 1216 60 prostatic prostatic JJ cord-000248-zueoyesj 1216 61 acid acid NN cord-000248-zueoyesj 1216 62 phosphatase phosphatase NN cord-000248-zueoyesj 1216 63 ( ( -LRB- cord-000248-zueoyesj 1216 64 PSAP PSAP NNP cord-000248-zueoyesj 1216 65 ) ) -RRB- cord-000248-zueoyesj 1216 66 in in IN cord-000248-zueoyesj 1216 67 transurethral transurethral NN cord-000248-zueoyesj 1216 68 resection resection NN cord-000248-zueoyesj 1216 69 specimens specimen NNS cord-000248-zueoyesj 1216 70 of of IN cord-000248-zueoyesj 1216 71 the the DT cord-000248-zueoyesj 1216 72 prostate prostate NN cord-000248-zueoyesj 1216 73 is be VBZ cord-000248-zueoyesj 1216 74 predictive predictive JJ cord-000248-zueoyesj 1216 75 of of IN cord-000248-zueoyesj 1216 76 histopathologic histopathologic JJ cord-000248-zueoyesj 1216 77 tumor tumor NN cord-000248-zueoyesj 1216 78 stage stage NN cord-000248-zueoyesj 1216 79 in in IN cord-000248-zueoyesj 1216 80 subsequent subsequent JJ cord-000248-zueoyesj 1216 81 radical radical JJ cord-000248-zueoyesj 1216 82 prostatectomies prostatectomy NNS cord-000248-zueoyesj 1216 83 Prostate prostate NN cord-000248-zueoyesj 1216 84 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1216 85 induced induce VBN cord-000248-zueoyesj 1216 86 by by IN cord-000248-zueoyesj 1216 87 N n CD cord-000248-zueoyesj 1216 88 - - HYPH cord-000248-zueoyesj 1216 89 methyl methyl NNP cord-000248-zueoyesj 1216 90 - - HYPH cord-000248-zueoyesj 1216 91 N N NNP cord-000248-zueoyesj 1216 92 - - HYPH cord-000248-zueoyesj 1216 93 nitrosourea nitrosourea NNP cord-000248-zueoyesj 1216 94 ( ( -LRB- cord-000248-zueoyesj 1216 95 mnu mnu NNP cord-000248-zueoyesj 1216 96 ) ) -RRB- cord-000248-zueoyesj 1216 97 in in IN cord-000248-zueoyesj 1216 98 gerbils gerbil NNS cord-000248-zueoyesj 1216 99 : : : cord-000248-zueoyesj 1216 100 Histopathological Histopathological NNP cord-000248-zueoyesj 1216 101 diagnosis diagnosis NN cord-000248-zueoyesj 1216 102 and and CC cord-000248-zueoyesj 1216 103 potential potential JJ cord-000248-zueoyesj 1216 104 invasiveness invasiveness NN cord-000248-zueoyesj 1216 105 mediated mediate VBN cord-000248-zueoyesj 1216 106 by by IN cord-000248-zueoyesj 1216 107 extracellular extracellular JJ cord-000248-zueoyesj 1216 108 matrix matrix NN cord-000248-zueoyesj 1216 109 components component NNS cord-000248-zueoyesj 1216 110 Synthesis Synthesis NNP cord-000248-zueoyesj 1216 111 and and CC cord-000248-zueoyesj 1216 112 use use NN cord-000248-zueoyesj 1216 113 of of IN cord-000248-zueoyesj 1216 114 isotope isotope NN cord-000248-zueoyesj 1216 115 - - HYPH cord-000248-zueoyesj 1216 116 labelled label VBN cord-000248-zueoyesj 1216 117 substrates substrate NNS cord-000248-zueoyesj 1216 118 for for IN cord-000248-zueoyesj 1216 119 a a DT cord-000248-zueoyesj 1216 120 mechanistic mechanistic JJ cord-000248-zueoyesj 1216 121 study study NN cord-000248-zueoyesj 1216 122 on on IN cord-000248-zueoyesj 1216 123 human human JJ cord-000248-zueoyesj 1216 124 alpha alpha JJ cord-000248-zueoyesj 1216 125 - - HYPH cord-000248-zueoyesj 1216 126 methylacyl methylacyl JJ cord-000248-zueoyesj 1216 127 - - HYPH cord-000248-zueoyesj 1216 128 CoA coa NN cord-000248-zueoyesj 1216 129 racemase racemase NN cord-000248-zueoyesj 1216 130 1A 1a NN cord-000248-zueoyesj 1216 131 ( ( -LRB- cord-000248-zueoyesj 1216 132 AMACR AMACR NNP cord-000248-zueoyesj 1216 133 ; ; : cord-000248-zueoyesj 1216 134 P504S P504S NNP cord-000248-zueoyesj 1216 135 ) ) -RRB- cord-000248-zueoyesj 1217 1 S-100A1 S-100A1 NNP cord-000248-zueoyesj 1217 2 Is be VBZ cord-000248-zueoyesj 1217 3 a a DT cord-000248-zueoyesj 1217 4 Reliable reliable JJ cord-000248-zueoyesj 1217 5 Marker marker NN cord-000248-zueoyesj 1217 6 in in IN cord-000248-zueoyesj 1217 7 Distinguishing distinguish VBG cord-000248-zueoyesj 1217 8 Nephrogenic Nephrogenic NNP cord-000248-zueoyesj 1217 9 Adenoma Adenoma NNP cord-000248-zueoyesj 1217 10 From from IN cord-000248-zueoyesj 1217 11 Prostatic Prostatic NNP cord-000248-zueoyesj 1217 12 Adenocarcinoma Adenocarcinoma NNP cord-000248-zueoyesj 1217 13 Molecular Molecular NNP cord-000248-zueoyesj 1217 14 cloning clone VBG cord-000248-zueoyesj 1217 15 and and CC cord-000248-zueoyesj 1217 16 preliminary preliminary JJ cord-000248-zueoyesj 1217 17 analysis analysis NN cord-000248-zueoyesj 1217 18 of of IN cord-000248-zueoyesj 1217 19 the the DT cord-000248-zueoyesj 1217 20 human human JJ cord-000248-zueoyesj 1217 21 alpha alpha JJ cord-000248-zueoyesj 1217 22 - - HYPH cord-000248-zueoyesj 1217 23 methylacyl methylacyl JJ cord-000248-zueoyesj 1217 24 - - HYPH cord-000248-zueoyesj 1217 25 CoA coa NN cord-000248-zueoyesj 1217 26 racemase racemase NN cord-000248-zueoyesj 1217 27 promoter promoter NN cord-000248-zueoyesj 1217 28 Autopsy Autopsy NNP cord-000248-zueoyesj 1217 29 evaluation evaluation NN cord-000248-zueoyesj 1217 30 of of IN cord-000248-zueoyesj 1217 31 a a DT cord-000248-zueoyesj 1217 32 prostate prostate NN cord-000248-zueoyesj 1217 33 cancer cancer NN cord-000248-zueoyesj 1217 34 case case NN cord-000248-zueoyesj 1217 35 treated treat VBN cord-000248-zueoyesj 1217 36 with with IN cord-000248-zueoyesj 1217 37 brachytherapy brachytherapy NN cord-000248-zueoyesj 1217 38 Loss loss NN cord-000248-zueoyesj 1217 39 of of IN cord-000248-zueoyesj 1217 40 heterozygosity heterozygosity NN cord-000248-zueoyesj 1217 41 ( ( -LRB- cord-000248-zueoyesj 1217 42 LOH LOH NNP cord-000248-zueoyesj 1217 43 ) ) -RRB- cord-000248-zueoyesj 1217 44 , , , cord-000248-zueoyesj 1217 45 malignancy malignancy NN cord-000248-zueoyesj 1217 46 grade grade NN cord-000248-zueoyesj 1217 47 and and CC cord-000248-zueoyesj 1217 48 clonality clonality NN cord-000248-zueoyesj 1217 49 in in IN cord-000248-zueoyesj 1217 50 microdissected microdissected JJ cord-000248-zueoyesj 1217 51 prostate prostate NN cord-000248-zueoyesj 1217 52 cancer cancer NN cord-000248-zueoyesj 1217 53 Allelic Allelic NNP cord-000248-zueoyesj 1217 54 loss loss NN cord-000248-zueoyesj 1217 55 and and CC cord-000248-zueoyesj 1217 56 microsatellite microsatellite JJ cord-000248-zueoyesj 1217 57 instability instability NN cord-000248-zueoyesj 1217 58 in in IN cord-000248-zueoyesj 1217 59 prostate prostate NN cord-000248-zueoyesj 1217 60 cancers cancer NNS cord-000248-zueoyesj 1217 61 in in IN cord-000248-zueoyesj 1217 62 Japan Japan NNP cord-000248-zueoyesj 1217 63 tumour tumour NN cord-000248-zueoyesj 1217 64 suppressor suppressor NN cord-000248-zueoyesj 1217 65 gene gene NN cord-000248-zueoyesj 1217 66 mutations mutation NNS cord-000248-zueoyesj 1217 67 in in IN cord-000248-zueoyesj 1217 68 benign benign JJ cord-000248-zueoyesj 1217 69 prostatic prostatic JJ cord-000248-zueoyesj 1217 70 hyperplasia hyperplasia NN cord-000248-zueoyesj 1217 71 and and CC cord-000248-zueoyesj 1217 72 prostate prostate NN cord-000248-zueoyesj 1217 73 cancer cancer NN cord-000248-zueoyesj 1217 74 Mutations Mutations NNPS cord-000248-zueoyesj 1217 75 in in IN cord-000248-zueoyesj 1217 76 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1217 77 and and CC cord-000248-zueoyesj 1217 78 BRCA2 brca2 NN cord-000248-zueoyesj 1217 79 and and CC cord-000248-zueoyesj 1217 80 predisposition predisposition NN cord-000248-zueoyesj 1217 81 to to IN cord-000248-zueoyesj 1217 82 prostate prostate NN cord-000248-zueoyesj 1217 83 cancer cancer NN cord-000248-zueoyesj 1217 84 BRCA1a brca1a NN cord-000248-zueoyesj 1217 85 has have VBZ cord-000248-zueoyesj 1217 86 antitumor antitumor JJ cord-000248-zueoyesj 1217 87 activity activity NN cord-000248-zueoyesj 1217 88 in in IN cord-000248-zueoyesj 1217 89 TN TN NNP cord-000248-zueoyesj 1217 90 breast breast NN cord-000248-zueoyesj 1217 91 , , , cord-000248-zueoyesj 1217 92 ovarian ovarian NN cord-000248-zueoyesj 1217 93 and and CC cord-000248-zueoyesj 1217 94 prostate prostate NN cord-000248-zueoyesj 1217 95 cancers cancer NNS cord-000248-zueoyesj 1218 1 Coexpression coexpression NN cord-000248-zueoyesj 1218 2 of of IN cord-000248-zueoyesj 1218 3 the the DT cord-000248-zueoyesj 1218 4 mutated mutate VBN cord-000248-zueoyesj 1218 5 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1218 6 mRNA mRNA NNP cord-000248-zueoyesj 1218 7 and and CC cord-000248-zueoyesj 1218 8 p53 p53 NN cord-000248-zueoyesj 1218 9 mRNA mRNA NNP cord-000248-zueoyesj 1218 10 and and CC cord-000248-zueoyesj 1218 11 its -PRON- PRP$ cord-000248-zueoyesj 1218 12 association association NN cord-000248-zueoyesj 1218 13 in in IN cord-000248-zueoyesj 1218 14 Chinese chinese JJ cord-000248-zueoyesj 1218 15 prostate prostate NN cord-000248-zueoyesj 1218 16 cancer cancer NN cord-000248-zueoyesj 1218 17 Exploiting exploit VBG cord-000248-zueoyesj 1218 18 the the DT cord-000248-zueoyesj 1218 19 Achilles Achilles NNP cord-000248-zueoyesj 1218 20 heel heel NN cord-000248-zueoyesj 1218 21 of of IN cord-000248-zueoyesj 1218 22 cancer cancer NN cord-000248-zueoyesj 1218 23 : : : cord-000248-zueoyesj 1218 24 the the DT cord-000248-zueoyesj 1218 25 therapeutic therapeutic JJ cord-000248-zueoyesj 1218 26 potential potential NN cord-000248-zueoyesj 1218 27 of of IN cord-000248-zueoyesj 1218 28 poly(ADP poly(adp NN cord-000248-zueoyesj 1218 29 - - HYPH cord-000248-zueoyesj 1218 30 ribose ribose NN cord-000248-zueoyesj 1218 31 ) ) -RRB- cord-000248-zueoyesj 1218 32 polymerase polymerase NN cord-000248-zueoyesj 1218 33 inhibitors inhibitor NNS cord-000248-zueoyesj 1218 34 in in IN cord-000248-zueoyesj 1218 35 BRCA2-defective BRCA2-defective NNP cord-000248-zueoyesj 1218 36 cancer cancer NN cord-000248-zueoyesj 1218 37 Prostate prostate NN cord-000248-zueoyesj 1218 38 cancer cancer NN cord-000248-zueoyesj 1218 39 patients patient NNS cord-000248-zueoyesj 1218 40 with with IN cord-000248-zueoyesj 1218 41 BRCA2 brca2 NN cord-000248-zueoyesj 1218 42 mutation mutation NN cord-000248-zueoyesj 1218 43 face face VBP cord-000248-zueoyesj 1218 44 poor poor JJ cord-000248-zueoyesj 1218 45 survival survival NN cord-000248-zueoyesj 1219 1 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1219 2 mutations mutation NNS cord-000248-zueoyesj 1219 3 and and CC cord-000248-zueoyesj 1219 4 prostate prostate NN cord-000248-zueoyesj 1219 5 cancer cancer NN cord-000248-zueoyesj 1219 6 in in IN cord-000248-zueoyesj 1219 7 Poland Poland NNP cord-000248-zueoyesj 1219 8 Common common JJ cord-000248-zueoyesj 1219 9 variation variation NN cord-000248-zueoyesj 1219 10 in in IN cord-000248-zueoyesj 1219 11 the the DT cord-000248-zueoyesj 1219 12 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1219 13 gene gene NN cord-000248-zueoyesj 1219 14 and and CC cord-000248-zueoyesj 1219 15 prostate prostate NN cord-000248-zueoyesj 1219 16 cancer cancer NN cord-000248-zueoyesj 1219 17 risk risk NN cord-000248-zueoyesj 1219 18 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1219 19 in in IN cord-000248-zueoyesj 1219 20 special special JJ cord-000248-zueoyesj 1219 21 populations population NNS cord-000248-zueoyesj 1220 1 Male male JJ cord-000248-zueoyesj 1220 2 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1220 3 and and CC cord-000248-zueoyesj 1220 4 BRCA2 BRCA2 NNP cord-000248-zueoyesj 1220 5 mutation mutation NN cord-000248-zueoyesj 1220 6 carriers carrier NNS cord-000248-zueoyesj 1220 7 : : : cord-000248-zueoyesj 1220 8 a a DT cord-000248-zueoyesj 1220 9 pilot pilot NN cord-000248-zueoyesj 1220 10 study study NN cord-000248-zueoyesj 1220 11 investigating investigate VBG cord-000248-zueoyesj 1220 12 medical medical JJ cord-000248-zueoyesj 1220 13 characteristics characteristic NNS cord-000248-zueoyesj 1220 14 of of IN cord-000248-zueoyesj 1220 15 patients patient NNS cord-000248-zueoyesj 1220 16 participating participate VBG cord-000248-zueoyesj 1220 17 in in IN cord-000248-zueoyesj 1220 18 a a DT cord-000248-zueoyesj 1220 19 prostate prostate NN cord-000248-zueoyesj 1220 20 cancer cancer NN cord-000248-zueoyesj 1220 21 prevention prevention NN cord-000248-zueoyesj 1220 22 clinic clinic NN cord-000248-zueoyesj 1221 1 Truncating truncate VBG cord-000248-zueoyesj 1222 1 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1222 2 mutations mutation NNS cord-000248-zueoyesj 1222 3 are be VBP cord-000248-zueoyesj 1222 4 uncommon uncommon JJ cord-000248-zueoyesj 1222 5 in in IN cord-000248-zueoyesj 1222 6 a a DT cord-000248-zueoyesj 1222 7 cohort cohort NN cord-000248-zueoyesj 1222 8 of of IN cord-000248-zueoyesj 1222 9 hereditary hereditary JJ cord-000248-zueoyesj 1222 10 prostate prostate NN cord-000248-zueoyesj 1222 11 cancer cancer NN cord-000248-zueoyesj 1222 12 families family NNS cord-000248-zueoyesj 1222 13 with with IN cord-000248-zueoyesj 1222 14 evidence evidence NN cord-000248-zueoyesj 1222 15 of of IN cord-000248-zueoyesj 1222 16 linkage linkage NN cord-000248-zueoyesj 1222 17 to to IN cord-000248-zueoyesj 1222 18 17q 17q CD cord-000248-zueoyesj 1222 19 markers marker NNS cord-000248-zueoyesj 1222 20 Unravelling unravel VBG cord-000248-zueoyesj 1222 21 the the DT cord-000248-zueoyesj 1222 22 genetics genetic NNS cord-000248-zueoyesj 1222 23 of of IN cord-000248-zueoyesj 1222 24 prostate prostate NN cord-000248-zueoyesj 1222 25 cancer cancer NN cord-000248-zueoyesj 1222 26 Prostate prostate NN cord-000248-zueoyesj 1222 27 - - HYPH cord-000248-zueoyesj 1222 28 cancer cancer NN cord-000248-zueoyesj 1222 29 screening screening NN cord-000248-zueoyesj 1222 30 targets target NNS cord-000248-zueoyesj 1222 31 men man NNS cord-000248-zueoyesj 1222 32 with with IN cord-000248-zueoyesj 1222 33 BRCA BRCA NNP cord-000248-zueoyesj 1222 34 mutations mutation NNS cord-000248-zueoyesj 1222 35 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1222 36 and and CC cord-000248-zueoyesj 1222 37 prostate prostate NN cord-000248-zueoyesj 1222 38 cancer cancer NN cord-000248-zueoyesj 1222 39 gene gene NN cord-000248-zueoyesj 1222 40 mutational mutational JJ cord-000248-zueoyesj 1222 41 rate rate NN cord-000248-zueoyesj 1222 42 , , , cord-000248-zueoyesj 1222 43 Gleason Gleason NNP cord-000248-zueoyesj 1222 44 score score NN cord-000248-zueoyesj 1222 45 , , , cord-000248-zueoyesj 1222 46 and and CC cord-000248-zueoyesj 1222 47 BK BK NNP cord-000248-zueoyesj 1222 48 virus virus NN cord-000248-zueoyesj 1222 49 infection infection NN cord-000248-zueoyesj 1222 50 in in IN cord-000248-zueoyesj 1222 51 prostate prostate NN cord-000248-zueoyesj 1222 52 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1222 53 : : : cord-000248-zueoyesj 1222 54 Is be VBZ cord-000248-zueoyesj 1222 55 there there EX cord-000248-zueoyesj 1222 56 a a DT cord-000248-zueoyesj 1222 57 correlation correlation NN cord-000248-zueoyesj 1222 58 TP53 TP53 NNP cord-000248-zueoyesj 1222 59 mutation mutation NN cord-000248-zueoyesj 1222 60 in in IN cord-000248-zueoyesj 1222 61 prostate prostate NN cord-000248-zueoyesj 1222 62 needle needle NN cord-000248-zueoyesj 1222 63 biopsies biopsy NNS cord-000248-zueoyesj 1222 64 - - : cord-000248-zueoyesj 1222 65 comparison comparison NN cord-000248-zueoyesj 1222 66 with with IN cord-000248-zueoyesj 1222 67 patients patient NNS cord-000248-zueoyesj 1222 68 follow follow VB cord-000248-zueoyesj 1222 69 - - HYPH cord-000248-zueoyesj 1222 70 up up NN cord-000248-zueoyesj 1222 71 Shared Shared NNP cord-000248-zueoyesj 1222 72 TP53 TP53 NNP cord-000248-zueoyesj 1222 73 gene gene NN cord-000248-zueoyesj 1222 74 mutation mutation NN cord-000248-zueoyesj 1222 75 in in IN cord-000248-zueoyesj 1222 76 morphologically morphologically RB cord-000248-zueoyesj 1222 77 and and CC cord-000248-zueoyesj 1222 78 phenotypically phenotypically RB cord-000248-zueoyesj 1222 79 distinct distinct JJ cord-000248-zueoyesj 1222 80 concurrent concurrent JJ cord-000248-zueoyesj 1222 81 primary primary JJ cord-000248-zueoyesj 1222 82 small small JJ cord-000248-zueoyesj 1222 83 cell cell NN cord-000248-zueoyesj 1222 84 neuroendocrine neuroendocrine JJ cord-000248-zueoyesj 1222 85 carcinoma carcinoma NN cord-000248-zueoyesj 1222 86 and and CC cord-000248-zueoyesj 1222 87 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1222 88 of of IN cord-000248-zueoyesj 1222 89 the the DT cord-000248-zueoyesj 1222 90 prostate prostate NN cord-000248-zueoyesj 1222 91 Unique unique JJ cord-000248-zueoyesj 1222 92 substitution substitution NN cord-000248-zueoyesj 1222 93 of of IN cord-000248-zueoyesj 1222 94 CHEK2 CHEK2 NNP cord-000248-zueoyesj 1222 95 and and CC cord-000248-zueoyesj 1223 1 TP53 TP53 NNP cord-000248-zueoyesj 1223 2 mutations mutation NNS cord-000248-zueoyesj 1223 3 implicated implicate VBN cord-000248-zueoyesj 1223 4 in in IN cord-000248-zueoyesj 1223 5 primary primary JJ cord-000248-zueoyesj 1223 6 prostate prostate NN cord-000248-zueoyesj 1223 7 tumors tumor NNS cord-000248-zueoyesj 1223 8 and and CC cord-000248-zueoyesj 1223 9 cancer cancer NN cord-000248-zueoyesj 1223 10 cell cell NN cord-000248-zueoyesj 1223 11 lines line NNS cord-000248-zueoyesj 1223 12 Molecular molecular JJ cord-000248-zueoyesj 1223 13 biology biology NN cord-000248-zueoyesj 1223 14 in in IN cord-000248-zueoyesj 1223 15 prostate prostate NN cord-000248-zueoyesj 1223 16 cancer cancer NN cord-000248-zueoyesj 1224 1 A a DT cord-000248-zueoyesj 1224 2 microdissection microdissection NN cord-000248-zueoyesj 1224 3 approach approach NN cord-000248-zueoyesj 1224 4 to to TO cord-000248-zueoyesj 1224 5 detect detect VB cord-000248-zueoyesj 1224 6 molecular molecular JJ cord-000248-zueoyesj 1224 7 markers marker NNS cord-000248-zueoyesj 1224 8 during during IN cord-000248-zueoyesj 1224 9 progression progression NN cord-000248-zueoyesj 1224 10 of of IN cord-000248-zueoyesj 1224 11 prostate prostate NN cord-000248-zueoyesj 1224 12 cancer cancer NN cord-000248-zueoyesj 1224 13 Molecular molecular JJ cord-000248-zueoyesj 1224 14 biology biology NN cord-000248-zueoyesj 1224 15 of of IN cord-000248-zueoyesj 1224 16 prostate prostate NN cord-000248-zueoyesj 1225 1 cancer cancer NN cord-000248-zueoyesj 1225 2 progression progression NN cord-000248-zueoyesj 1226 1 Molecular molecular JJ cord-000248-zueoyesj 1226 2 heterogeneity heterogeneity NN cord-000248-zueoyesj 1226 3 in in IN cord-000248-zueoyesj 1226 4 prostate prostate NN cord-000248-zueoyesj 1226 5 cancer cancer NN cord-000248-zueoyesj 1226 6 : : : cord-000248-zueoyesj 1226 7 can can MD cord-000248-zueoyesj 1226 8 TP53 TP53 NNP cord-000248-zueoyesj 1226 9 mutation mutation NN cord-000248-zueoyesj 1226 10 unravel unravel VBP cord-000248-zueoyesj 1226 11 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1226 12 abnormalities abnormality NNS cord-000248-zueoyesj 1226 13 in in IN cord-000248-zueoyesj 1226 14 primary primary JJ cord-000248-zueoyesj 1226 15 prostate prostate NN cord-000248-zueoyesj 1226 16 cancer cancer NN cord-000248-zueoyesj 1226 17 : : : cord-000248-zueoyesj 1226 18 single single JJ cord-000248-zueoyesj 1226 19 - - HYPH cord-000248-zueoyesj 1226 20 strand strand NN cord-000248-zueoyesj 1226 21 conformation conformation NN cord-000248-zueoyesj 1226 22 polymorphism polymorphism NN cord-000248-zueoyesj 1226 23 analysis analysis NN cord-000248-zueoyesj 1226 24 of of IN cord-000248-zueoyesj 1226 25 complementary complementary JJ cord-000248-zueoyesj 1226 26 DNA dna NN cord-000248-zueoyesj 1226 27 in in IN cord-000248-zueoyesj 1226 28 comparison comparison NN cord-000248-zueoyesj 1226 29 with with IN cord-000248-zueoyesj 1226 30 genomic genomic JJ cord-000248-zueoyesj 1226 31 DNA dna NN cord-000248-zueoyesj 1226 32 . . . cord-000248-zueoyesj 1227 1 The the DT cord-000248-zueoyesj 1227 2 Cooperative Cooperative NNP cord-000248-zueoyesj 1227 3 Prostate Prostate NNP cord-000248-zueoyesj 1227 4 Network Network NNP cord-000248-zueoyesj 1227 5 status status NN cord-000248-zueoyesj 1227 6 and and CC cord-000248-zueoyesj 1227 7 prognosis prognosis NN cord-000248-zueoyesj 1227 8 of of IN cord-000248-zueoyesj 1227 9 locally locally RB cord-000248-zueoyesj 1227 10 advanced advanced JJ cord-000248-zueoyesj 1227 11 prostatic prostatic JJ cord-000248-zueoyesj 1227 12 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1227 13 : : : cord-000248-zueoyesj 1227 14 a a DT cord-000248-zueoyesj 1227 15 study study NN cord-000248-zueoyesj 1227 16 based base VBN cord-000248-zueoyesj 1227 17 on on IN cord-000248-zueoyesj 1227 18 RTOG RTOG NNP cord-000248-zueoyesj 1227 19 8610 8610 CD cord-000248-zueoyesj 1227 20 Localization Localization NNP cord-000248-zueoyesj 1227 21 of of IN cord-000248-zueoyesj 1227 22 prostate prostate NN cord-000248-zueoyesj 1227 23 cancer cancer NN cord-000248-zueoyesj 1227 24 metastasis metastasis NN cord-000248-zueoyesj 1227 25 - - HYPH cord-000248-zueoyesj 1227 26 suppressor suppressor NN cord-000248-zueoyesj 1227 27 activity activity NN cord-000248-zueoyesj 1227 28 on on IN cord-000248-zueoyesj 1227 29 human human JJ cord-000248-zueoyesj 1227 30 chromosome chromosome NN cord-000248-zueoyesj 1227 31 17 17 CD cord-000248-zueoyesj 1227 32 Correlation correlation NN cord-000248-zueoyesj 1227 33 of of IN cord-000248-zueoyesj 1227 34 genetic genetic JJ cord-000248-zueoyesj 1227 35 and and CC cord-000248-zueoyesj 1227 36 immunodetection immunodetection NN cord-000248-zueoyesj 1227 37 of of IN cord-000248-zueoyesj 1227 38 TP53 TP53 NNP cord-000248-zueoyesj 1227 39 mutations mutation NNS cord-000248-zueoyesj 1227 40 in in IN cord-000248-zueoyesj 1227 41 malignant malignant JJ cord-000248-zueoyesj 1227 42 and and CC cord-000248-zueoyesj 1227 43 benign benign JJ cord-000248-zueoyesj 1227 44 prostate prostate NN cord-000248-zueoyesj 1227 45 tissues tissue NNS cord-000248-zueoyesj 1227 46 Molecular molecular JJ cord-000248-zueoyesj 1227 47 markers marker NNS cord-000248-zueoyesj 1227 48 for for IN cord-000248-zueoyesj 1227 49 predicting predict VBG cord-000248-zueoyesj 1227 50 prostate prostate NN cord-000248-zueoyesj 1227 51 cancer cancer NN cord-000248-zueoyesj 1227 52 stage stage NN cord-000248-zueoyesj 1227 53 and and CC cord-000248-zueoyesj 1227 54 survival survival NN cord-000248-zueoyesj 1227 55 Role role NN cord-000248-zueoyesj 1227 56 in in IN cord-000248-zueoyesj 1227 57 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1227 58 of of IN cord-000248-zueoyesj 1227 59 silent silent JJ cord-000248-zueoyesj 1227 60 mutations mutation NNS cord-000248-zueoyesj 1227 61 in in IN cord-000248-zueoyesj 1227 62 the the DT cord-000248-zueoyesj 1227 63 TP53 TP53 NNP cord-000248-zueoyesj 1227 64 gene gene NN cord-000248-zueoyesj 1227 65 Chromosomal chromosomal JJ cord-000248-zueoyesj 1227 66 imbalances imbalance NNS cord-000248-zueoyesj 1227 67 , , , cord-000248-zueoyesj 1227 68 loss loss NN cord-000248-zueoyesj 1227 69 of of IN cord-000248-zueoyesj 1227 70 heterozygosity heterozygosity NN cord-000248-zueoyesj 1227 71 , , , cord-000248-zueoyesj 1227 72 and and CC cord-000248-zueoyesj 1227 73 immunohistochemical immunohistochemical JJ cord-000248-zueoyesj 1227 74 expression expression NN cord-000248-zueoyesj 1227 75 of of IN cord-000248-zueoyesj 1227 76 TP53 TP53 NNP cord-000248-zueoyesj 1227 77 , , , cord-000248-zueoyesj 1227 78 RB1 RB1 NNP cord-000248-zueoyesj 1227 79 , , , cord-000248-zueoyesj 1227 80 and and CC cord-000248-zueoyesj 1227 81 PTEN PTEN NNP cord-000248-zueoyesj 1227 82 in in IN cord-000248-zueoyesj 1227 83 intraductal intraductal JJ cord-000248-zueoyesj 1227 84 cancer cancer NN cord-000248-zueoyesj 1227 85 , , , cord-000248-zueoyesj 1227 86 intraepithelial intraepithelial JJ cord-000248-zueoyesj 1227 87 neoplasia neoplasia NN cord-000248-zueoyesj 1227 88 , , , cord-000248-zueoyesj 1227 89 and and CC cord-000248-zueoyesj 1227 90 invasive invasive JJ cord-000248-zueoyesj 1227 91 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1227 92 of of IN cord-000248-zueoyesj 1227 93 the the DT cord-000248-zueoyesj 1227 94 prostate prostate NN cord-000248-zueoyesj 1227 95 Increase increase NN cord-000248-zueoyesj 1227 96 of of IN cord-000248-zueoyesj 1227 97 androgen androgen NN cord-000248-zueoyesj 1227 98 - - HYPH cord-000248-zueoyesj 1227 99 induced induce VBN cord-000248-zueoyesj 1227 100 cell cell NN cord-000248-zueoyesj 1227 101 death death NN cord-000248-zueoyesj 1227 102 and and CC cord-000248-zueoyesj 1227 103 androgen androgen NN cord-000248-zueoyesj 1227 104 receptor receptor NN cord-000248-zueoyesj 1227 105 transactivation transactivation NN cord-000248-zueoyesj 1227 106 by by IN cord-000248-zueoyesj 1227 107 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1227 108 in in IN cord-000248-zueoyesj 1227 109 prostate prostate NN cord-000248-zueoyesj 1227 110 cancer cancer NN cord-000248-zueoyesj 1227 111 cells cell NNS cord-000248-zueoyesj 1228 1 Androgen androgen NN cord-000248-zueoyesj 1228 2 regulation regulation NN cord-000248-zueoyesj 1228 3 of of IN cord-000248-zueoyesj 1228 4 the the DT cord-000248-zueoyesj 1228 5 androgen androgen NN cord-000248-zueoyesj 1228 6 receptor receptor NN cord-000248-zueoyesj 1228 7 coregulators coregulator VBZ cord-000248-zueoyesj 1228 8 Breast breast NN cord-000248-zueoyesj 1228 9 cancer cancer NN cord-000248-zueoyesj 1228 10 susceptibility susceptibility NN cord-000248-zueoyesj 1228 11 gene gene NN cord-000248-zueoyesj 1228 12 1 1 CD cord-000248-zueoyesj 1228 13 ( ( -LRB- cord-000248-zueoyesj 1228 14 BRCAI BRCAI NNP cord-000248-zueoyesj 1228 15 ) ) -RRB- cord-000248-zueoyesj 1228 16 is be VBZ cord-000248-zueoyesj 1228 17 a a DT cord-000248-zueoyesj 1228 18 coactivator coactivator NN cord-000248-zueoyesj 1228 19 of of IN cord-000248-zueoyesj 1228 20 the the DT cord-000248-zueoyesj 1228 21 androgen androgen NN cord-000248-zueoyesj 1228 22 receptor receptor NN cord-000248-zueoyesj 1228 23 Common common JJ cord-000248-zueoyesj 1228 24 mutations mutation NNS cord-000248-zueoyesj 1228 25 in in IN cord-000248-zueoyesj 1228 26 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1228 27 and and CC cord-000248-zueoyesj 1228 28 BRCA2 BRCA2 NNP cord-000248-zueoyesj 1228 29 do do VBP cord-000248-zueoyesj 1228 30 not not RB cord-000248-zueoyesj 1228 31 contribute contribute VB cord-000248-zueoyesj 1228 32 to to IN cord-000248-zueoyesj 1228 33 early early JJ cord-000248-zueoyesj 1228 34 prostate prostate NN cord-000248-zueoyesj 1228 35 cancer cancer NN cord-000248-zueoyesj 1228 36 in in IN cord-000248-zueoyesj 1228 37 Jewish jewish JJ cord-000248-zueoyesj 1228 38 men man NNS cord-000248-zueoyesj 1228 39 BRCA1 brca1 VBP cord-000248-zueoyesj 1228 40 in in IN cord-000248-zueoyesj 1228 41 hormonal hormonal JJ cord-000248-zueoyesj 1228 42 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1228 43 : : : cord-000248-zueoyesj 1229 1 basic basic JJ cord-000248-zueoyesj 1229 2 and and CC cord-000248-zueoyesj 1229 3 clinical clinical JJ cord-000248-zueoyesj 1229 4 research research NN cord-000248-zueoyesj 1229 5 Role role NN cord-000248-zueoyesj 1229 6 of of IN cord-000248-zueoyesj 1229 7 direct direct JJ cord-000248-zueoyesj 1229 8 interaction interaction NN cord-000248-zueoyesj 1229 9 in in IN cord-000248-zueoyesj 1229 10 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1229 11 inhibition inhibition NN cord-000248-zueoyesj 1229 12 of of IN cord-000248-zueoyesj 1229 13 estrogen estrogen NN cord-000248-zueoyesj 1229 14 receptor receptor NN cord-000248-zueoyesj 1229 15 activity activity NN cord-000248-zueoyesj 1230 1 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1230 2 regulates regulate VBZ cord-000248-zueoyesj 1230 3 gene gene NN cord-000248-zueoyesj 1230 4 expression expression NN cord-000248-zueoyesj 1230 5 for for IN cord-000248-zueoyesj 1230 6 orderly orderly JJ cord-000248-zueoyesj 1230 7 mitotic mitotic JJ cord-000248-zueoyesj 1230 8 progression progression NN cord-000248-zueoyesj 1231 1 The the DT cord-000248-zueoyesj 1231 2 consequences consequence NNS cord-000248-zueoyesj 1231 3 of of IN cord-000248-zueoyesj 1231 4 chromosomal chromosomal JJ cord-000248-zueoyesj 1231 5 aneuploidy aneuploidy NN cord-000248-zueoyesj 1231 6 on on IN cord-000248-zueoyesj 1231 7 gene gene NN cord-000248-zueoyesj 1231 8 expression expression NN cord-000248-zueoyesj 1231 9 profiles profile NNS cord-000248-zueoyesj 1231 10 in in IN cord-000248-zueoyesj 1231 11 a a DT cord-000248-zueoyesj 1231 12 cell cell NN cord-000248-zueoyesj 1231 13 line line NN cord-000248-zueoyesj 1231 14 model model NN cord-000248-zueoyesj 1231 15 for for IN cord-000248-zueoyesj 1231 16 prostate prostate NN cord-000248-zueoyesj 1231 17 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1231 18 Constitutive constitutive JJ cord-000248-zueoyesj 1231 19 activation activation NN cord-000248-zueoyesj 1231 20 of of IN cord-000248-zueoyesj 1231 21 JAK JAK NNP cord-000248-zueoyesj 1231 22 - - HYPH cord-000248-zueoyesj 1231 23 STAT3 STAT3 NNP cord-000248-zueoyesj 1231 24 signaling signal VBG cord-000248-zueoyesj 1231 25 by by IN cord-000248-zueoyesj 1231 26 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1231 27 in in IN cord-000248-zueoyesj 1231 28 human human JJ cord-000248-zueoyesj 1231 29 prostate prostate NN cord-000248-zueoyesj 1231 30 cancer cancer NN cord-000248-zueoyesj 1231 31 cells cell NNS cord-000248-zueoyesj 1231 32 Methylation Methylation NNP cord-000248-zueoyesj 1231 33 analysis analysis NN cord-000248-zueoyesj 1231 34 of of IN cord-000248-zueoyesj 1231 35 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1231 36 , , , cord-000248-zueoyesj 1231 37 RASSF1 RASSF1 NNS cord-000248-zueoyesj 1231 38 , , , cord-000248-zueoyesj 1231 39 GSTP1 gstp1 NN cord-000248-zueoyesj 1231 40 and and CC cord-000248-zueoyesj 1231 41 EPHB2 EPHB2 VBZ cord-000248-zueoyesj 1231 42 promoters promoter NNS cord-000248-zueoyesj 1231 43 in in IN cord-000248-zueoyesj 1231 44 prostate prostate NN cord-000248-zueoyesj 1231 45 biopsies biopsy NNS cord-000248-zueoyesj 1231 46 according accord VBG cord-000248-zueoyesj 1231 47 to to IN cord-000248-zueoyesj 1231 48 different different JJ cord-000248-zueoyesj 1231 49 degrees degree NNS cord-000248-zueoyesj 1231 50 of of IN cord-000248-zueoyesj 1231 51 malignancy malignancy NN cord-000248-zueoyesj 1231 52 PSF psf NN cord-000248-zueoyesj 1231 53 and and CC cord-000248-zueoyesj 1231 54 p54(nrb)/NonO p54(nrb)/NonO NNP cord-000248-zueoyesj 1231 55 - - HYPH cord-000248-zueoyesj 1231 56 multi multi JJ cord-000248-zueoyesj 1231 57 - - JJ cord-000248-zueoyesj 1231 58 functional functional JJ cord-000248-zueoyesj 1231 59 nuclear nuclear JJ cord-000248-zueoyesj 1231 60 proteins protein NNS cord-000248-zueoyesj 1232 1 The the DT cord-000248-zueoyesj 1232 2 PSF.p54nrb PSF.p54nrb NNP cord-000248-zueoyesj 1232 3 complex complex NN cord-000248-zueoyesj 1232 4 is be VBZ cord-000248-zueoyesj 1232 5 a a DT cord-000248-zueoyesj 1232 6 novel novel JJ cord-000248-zueoyesj 1232 7 Mnk Mnk NNP cord-000248-zueoyesj 1232 8 substrate substrate NN cord-000248-zueoyesj 1232 9 that that WDT cord-000248-zueoyesj 1232 10 binds bind VBZ cord-000248-zueoyesj 1232 11 the the DT cord-000248-zueoyesj 1232 12 mRNA mrna NN cord-000248-zueoyesj 1232 13 for for IN cord-000248-zueoyesj 1232 14 tumor tumor NN cord-000248-zueoyesj 1232 15 necrosis necrosis NN cord-000248-zueoyesj 1232 16 factor factor NN cord-000248-zueoyesj 1232 17 alpha alpha NN cord-000248-zueoyesj 1232 18 PTB PTB NNP cord-000248-zueoyesj 1232 19 - - HYPH cord-000248-zueoyesj 1232 20 associated associate VBN cord-000248-zueoyesj 1232 21 splicing splicing NN cord-000248-zueoyesj 1232 22 factor factor NN cord-000248-zueoyesj 1232 23 regulates regulate VBZ cord-000248-zueoyesj 1232 24 growth growth NN cord-000248-zueoyesj 1232 25 factor factor NN cord-000248-zueoyesj 1232 26 - - HYPH cord-000248-zueoyesj 1232 27 stimulated stimulate VBN cord-000248-zueoyesj 1232 28 gene gene NN cord-000248-zueoyesj 1232 29 expression expression NN cord-000248-zueoyesj 1232 30 in in IN cord-000248-zueoyesj 1232 31 mammalian mammalian JJ cord-000248-zueoyesj 1232 32 cells cell NNS cord-000248-zueoyesj 1233 1 Transcriptional transcriptional JJ cord-000248-zueoyesj 1233 2 activity activity NN cord-000248-zueoyesj 1233 3 of of IN cord-000248-zueoyesj 1233 4 androgen androgen NN cord-000248-zueoyesj 1233 5 receptor receptor NN cord-000248-zueoyesj 1233 6 is be VBZ cord-000248-zueoyesj 1233 7 modulated modulate VBN cord-000248-zueoyesj 1233 8 by by IN cord-000248-zueoyesj 1233 9 two two CD cord-000248-zueoyesj 1233 10 RNA RNA NNP cord-000248-zueoyesj 1233 11 splicing splicing NN cord-000248-zueoyesj 1233 12 factors factor NNS cord-000248-zueoyesj 1233 13 , , , cord-000248-zueoyesj 1233 14 PSF psf NN cord-000248-zueoyesj 1233 15 and and CC cord-000248-zueoyesj 1233 16 p54nrb p54nrb NNP cord-000248-zueoyesj 1233 17 PSPC1 PSPC1 NNP cord-000248-zueoyesj 1233 18 , , , cord-000248-zueoyesj 1233 19 NONO nono UH cord-000248-zueoyesj 1233 20 , , , cord-000248-zueoyesj 1233 21 and and CC cord-000248-zueoyesj 1233 22 SFPQ SFPQ NNP cord-000248-zueoyesj 1233 23 are be VBP cord-000248-zueoyesj 1233 24 expressed express VBN cord-000248-zueoyesj 1233 25 in in IN cord-000248-zueoyesj 1233 26 mouse mouse NN cord-000248-zueoyesj 1233 27 Sertoli Sertoli NNP cord-000248-zueoyesj 1233 28 cells cell NNS cord-000248-zueoyesj 1233 29 and and CC cord-000248-zueoyesj 1233 30 may may MD cord-000248-zueoyesj 1233 31 function function VB cord-000248-zueoyesj 1233 32 as as IN cord-000248-zueoyesj 1233 33 coregulators coregulator NNS cord-000248-zueoyesj 1233 34 of of IN cord-000248-zueoyesj 1233 35 androgen androgen NN cord-000248-zueoyesj 1233 36 receptor receptor NN cord-000248-zueoyesj 1233 37 - - HYPH cord-000248-zueoyesj 1233 38 mediated mediate VBN cord-000248-zueoyesj 1233 39 transcription transcription NN cord-000248-zueoyesj 1233 40 acts act NNS cord-000248-zueoyesj 1233 41 as as IN cord-000248-zueoyesj 1233 42 a a DT cord-000248-zueoyesj 1233 43 transcriptional transcriptional JJ cord-000248-zueoyesj 1233 44 coactivator coactivator NN cord-000248-zueoyesj 1233 45 for for IN cord-000248-zueoyesj 1233 46 activation activation NN cord-000248-zueoyesj 1233 47 function function NN cord-000248-zueoyesj 1233 48 1 1 CD cord-000248-zueoyesj 1233 49 of of IN cord-000248-zueoyesj 1233 50 the the DT cord-000248-zueoyesj 1233 51 human human JJ cord-000248-zueoyesj 1233 52 androgen androgen NN cord-000248-zueoyesj 1233 53 receptor receptor NN cord-000248-zueoyesj 1233 54 Regulation Regulation NNP cord-000248-zueoyesj 1233 55 of of IN cord-000248-zueoyesj 1233 56 RNA RNA NNP cord-000248-zueoyesj 1233 57 - - HYPH cord-000248-zueoyesj 1233 58 polymerase polymerase NNP cord-000248-zueoyesj 1233 59 - - HYPH cord-000248-zueoyesj 1233 60 II ii NN cord-000248-zueoyesj 1233 61 - - HYPH cord-000248-zueoyesj 1233 62 dependent dependent JJ cord-000248-zueoyesj 1233 63 transcription transcription NN cord-000248-zueoyesj 1233 64 by by IN cord-000248-zueoyesj 1233 65 N n CD cord-000248-zueoyesj 1233 66 - - HYPH cord-000248-zueoyesj 1233 67 WASP WASP NNP cord-000248-zueoyesj 1233 68 and and CC cord-000248-zueoyesj 1233 69 its -PRON- PRP$ cord-000248-zueoyesj 1233 70 nuclearbinding nuclearbinde VBG cord-000248-zueoyesj 1233 71 partners partner NNS cord-000248-zueoyesj 1233 72 Identification identification NN cord-000248-zueoyesj 1233 73 and and CC cord-000248-zueoyesj 1233 74 characterization characterization NN cord-000248-zueoyesj 1233 75 of of IN cord-000248-zueoyesj 1233 76 the the DT cord-000248-zueoyesj 1233 77 protein protein NN cord-000248-zueoyesj 1233 78 - - HYPH cord-000248-zueoyesj 1233 79 associated associate VBN cord-000248-zueoyesj 1233 80 splicing splicing NN cord-000248-zueoyesj 1233 81 factor factor NN cord-000248-zueoyesj 1233 82 as as IN cord-000248-zueoyesj 1233 83 a a DT cord-000248-zueoyesj 1233 84 negative negative JJ cord-000248-zueoyesj 1233 85 coregulator coregulator NN cord-000248-zueoyesj 1233 86 of of IN cord-000248-zueoyesj 1233 87 the the DT cord-000248-zueoyesj 1233 88 progesterone progesterone NN cord-000248-zueoyesj 1233 89 receptor receptor NN cord-000248-zueoyesj 1233 90 Inhibition Inhibition NNP cord-000248-zueoyesj 1233 91 of of IN cord-000248-zueoyesj 1233 92 dendritic dendritic JJ cord-000248-zueoyesj 1233 93 cell cell NN cord-000248-zueoyesj 1233 94 generation generation NN cord-000248-zueoyesj 1233 95 and and CC cord-000248-zueoyesj 1233 96 function function NN cord-000248-zueoyesj 1233 97 by by IN cord-000248-zueoyesj 1233 98 serum serum NN cord-000248-zueoyesj 1233 99 from from IN cord-000248-zueoyesj 1233 100 prostate prostate NN cord-000248-zueoyesj 1233 101 cancer cancer NN cord-000248-zueoyesj 1233 102 patients patient NNS cord-000248-zueoyesj 1233 103 : : : cord-000248-zueoyesj 1233 104 correlation correlation NN cord-000248-zueoyesj 1233 105 with with IN cord-000248-zueoyesj 1233 106 serum serum NN cord-000248-zueoyesj 1233 107 - - HYPH cord-000248-zueoyesj 1233 108 free free JJ cord-000248-zueoyesj 1233 109 PSA PSA NNP cord-000248-zueoyesj 1233 110 Impact Impact NNP cord-000248-zueoyesj 1233 111 of of IN cord-000248-zueoyesj 1233 112 the the DT cord-000248-zueoyesj 1233 113 tumor tumor NN cord-000248-zueoyesj 1233 114 microenvironment microenvironment NN cord-000248-zueoyesj 1233 115 on on IN cord-000248-zueoyesj 1233 116 host host NN cord-000248-zueoyesj 1233 117 infiltrating infiltrate VBG cord-000248-zueoyesj 1233 118 cells cell NNS cord-000248-zueoyesj 1233 119 and and CC cord-000248-zueoyesj 1233 120 the the DT cord-000248-zueoyesj 1233 121 efficacy efficacy NN cord-000248-zueoyesj 1233 122 of of IN cord-000248-zueoyesj 1233 123 flt3-ligand flt3-ligand NNP cord-000248-zueoyesj 1233 124 combination combination NN cord-000248-zueoyesj 1233 125 immunotherapy immunotherapy NN cord-000248-zueoyesj 1233 126 evaluated evaluate VBN cord-000248-zueoyesj 1233 127 in in IN cord-000248-zueoyesj 1233 128 a a DT cord-000248-zueoyesj 1233 129 treatment treatment NN cord-000248-zueoyesj 1233 130 model model NN cord-000248-zueoyesj 1233 131 of of IN cord-000248-zueoyesj 1233 132 mouse mouse NN cord-000248-zueoyesj 1233 133 prostate prostate NN cord-000248-zueoyesj 1233 134 cancer cancer NN cord-000248-zueoyesj 1233 135 Prostate Prostate NNP cord-000248-zueoyesj 1233 136 tumor tumor NN cord-000248-zueoyesj 1233 137 microenvironment microenvironment NN cord-000248-zueoyesj 1233 138 alters alter VBZ cord-000248-zueoyesj 1233 139 immune immune JJ cord-000248-zueoyesj 1233 140 cells cell NNS cord-000248-zueoyesj 1233 141 and and CC cord-000248-zueoyesj 1233 142 prevents prevent VBZ cord-000248-zueoyesj 1233 143 long long JJ cord-000248-zueoyesj 1233 144 - - HYPH cord-000248-zueoyesj 1233 145 term term NN cord-000248-zueoyesj 1233 146 survival survival NN cord-000248-zueoyesj 1233 147 in in IN cord-000248-zueoyesj 1233 148 an an DT cord-000248-zueoyesj 1233 149 orthotopic orthotopic JJ cord-000248-zueoyesj 1233 150 mouse mouse NN cord-000248-zueoyesj 1233 151 model model NN cord-000248-zueoyesj 1233 152 following follow VBG cord-000248-zueoyesj 1233 153 flt3-ligand flt3-ligand NNP cord-000248-zueoyesj 1233 154 / / , cord-000248-zueoyesj 1233 155 CD40-ligand CD40-ligand NNP cord-000248-zueoyesj 1233 156 immunotherapy immunotherapy NN cord-000248-zueoyesj 1234 1 The the DT cord-000248-zueoyesj 1234 2 influence influence NN cord-000248-zueoyesj 1234 3 of of IN cord-000248-zueoyesj 1234 4 alpha1-antagonist alpha1-antagonist NN cord-000248-zueoyesj 1234 5 on on IN cord-000248-zueoyesj 1234 6 the the DT cord-000248-zueoyesj 1234 7 expression expression NN cord-000248-zueoyesj 1234 8 pattern pattern NN cord-000248-zueoyesj 1234 9 of of IN cord-000248-zueoyesj 1234 10 TNF TNF NNP cord-000248-zueoyesj 1234 11 receptor receptor NN cord-000248-zueoyesj 1234 12 family family NN cord-000248-zueoyesj 1234 13 in in IN cord-000248-zueoyesj 1234 14 primary primary JJ cord-000248-zueoyesj 1234 15 culture culture NN cord-000248-zueoyesj 1234 16 of of IN cord-000248-zueoyesj 1234 17 prostate prostate NN cord-000248-zueoyesj 1234 18 epithelial epithelial JJ cord-000248-zueoyesj 1234 19 cells cell NNS cord-000248-zueoyesj 1234 20 from from IN cord-000248-zueoyesj 1234 21 BPH BPH NNP cord-000248-zueoyesj 1234 22 patients patient NNS cord-000248-zueoyesj 1235 1 Adenovirus Adenovirus NNP cord-000248-zueoyesj 1235 2 - - HYPH cord-000248-zueoyesj 1235 3 mediated mediate VBN cord-000248-zueoyesj 1235 4 CD40 CD40 NNP cord-000248-zueoyesj 1235 5 ligand ligand NN cord-000248-zueoyesj 1235 6 therapy therapy NN cord-000248-zueoyesj 1235 7 induces induce VBZ cord-000248-zueoyesj 1235 8 tumor tumor NN cord-000248-zueoyesj 1235 9 cell cell NN cord-000248-zueoyesj 1235 10 apoptosis apoptosis NN cord-000248-zueoyesj 1235 11 and and CC cord-000248-zueoyesj 1235 12 systemic systemic JJ cord-000248-zueoyesj 1235 13 immunity immunity NN cord-000248-zueoyesj 1235 14 in in IN cord-000248-zueoyesj 1235 15 the the DT cord-000248-zueoyesj 1235 16 TRAMP tramp NN cord-000248-zueoyesj 1235 17 - - HYPH cord-000248-zueoyesj 1235 18 C2 c2 NN cord-000248-zueoyesj 1235 19 mouse mouse NN cord-000248-zueoyesj 1235 20 prostate prostate NN cord-000248-zueoyesj 1235 21 cancer cancer NN cord-000248-zueoyesj 1235 22 model model NN cord-000248-zueoyesj 1235 23 Avoiding avoid VBG cord-000248-zueoyesj 1235 24 Tolerance tolerance NN cord-000248-zueoyesj 1235 25 Against against IN cord-000248-zueoyesj 1235 26 Prostatic Prostatic NNP cord-000248-zueoyesj 1235 27 Antigens Antigens NNP cord-000248-zueoyesj 1235 28 With with IN cord-000248-zueoyesj 1235 29 Subdominant Subdominant NNP cord-000248-zueoyesj 1235 30 Peptide Peptide NNP cord-000248-zueoyesj 1235 31 Epitopes Epitopes NNP cord-000248-zueoyesj 1235 32 Avoiding avoid VBG cord-000248-zueoyesj 1235 33 tolerance tolerance NN cord-000248-zueoyesj 1235 34 against against IN cord-000248-zueoyesj 1235 35 prostatic prostatic JJ cord-000248-zueoyesj 1235 36 antigens antigen NNS cord-000248-zueoyesj 1235 37 with with IN cord-000248-zueoyesj 1235 38 subdominant subdominant JJ cord-000248-zueoyesj 1235 39 peptide peptide NN cord-000248-zueoyesj 1235 40 epitopes epitope NNS cord-000248-zueoyesj 1235 41 Plasma plasma NN cord-000248-zueoyesj 1235 42 tissue tissue NN cord-000248-zueoyesj 1235 43 factor factor NN cord-000248-zueoyesj 1235 44 antigen antigen NN cord-000248-zueoyesj 1235 45 in in IN cord-000248-zueoyesj 1235 46 localized localized JJ cord-000248-zueoyesj 1235 47 prostate prostate NN cord-000248-zueoyesj 1235 48 cancer cancer NN cord-000248-zueoyesj 1235 49 : : : cord-000248-zueoyesj 1235 50 distribution distribution NN cord-000248-zueoyesj 1235 51 , , , cord-000248-zueoyesj 1235 52 clinical clinical JJ cord-000248-zueoyesj 1235 53 significance significance NN cord-000248-zueoyesj 1235 54 and and CC cord-000248-zueoyesj 1235 55 correlation correlation NN cord-000248-zueoyesj 1235 56 with with IN cord-000248-zueoyesj 1235 57 haemostatic haemostatic JJ cord-000248-zueoyesj 1235 58 activation activation NN cord-000248-zueoyesj 1235 59 markers marker NNS cord-000248-zueoyesj 1235 60 Enhanced enhanced JJ cord-000248-zueoyesj 1235 61 activation activation NN cord-000248-zueoyesj 1235 62 of of IN cord-000248-zueoyesj 1235 63 human human JJ cord-000248-zueoyesj 1235 64 dendritic dendritic JJ cord-000248-zueoyesj 1235 65 cells cell NNS cord-000248-zueoyesj 1235 66 by by IN cord-000248-zueoyesj 1235 67 inducible inducible JJ cord-000248-zueoyesj 1236 1 CD40 CD40 NNP cord-000248-zueoyesj 1236 2 and and CC cord-000248-zueoyesj 1236 3 Toll Toll NNP cord-000248-zueoyesj 1236 4 - - HYPH cord-000248-zueoyesj 1236 5 like like JJ cord-000248-zueoyesj 1236 6 receptor-4 receptor-4 NNP cord-000248-zueoyesj 1236 7 ligation ligation NN cord-000248-zueoyesj 1237 1 Mature mature JJ cord-000248-zueoyesj 1237 2 dendritic dendritic JJ cord-000248-zueoyesj 1237 3 cells cell NNS cord-000248-zueoyesj 1237 4 induce induce VBP cord-000248-zueoyesj 1237 5 tumor tumor NN cord-000248-zueoyesj 1237 6 - - HYPH cord-000248-zueoyesj 1237 7 specific specific JJ cord-000248-zueoyesj 1237 8 type type NN cord-000248-zueoyesj 1237 9 1 1 CD cord-000248-zueoyesj 1237 10 regulatory regulatory JJ cord-000248-zueoyesj 1237 11 T t NN cord-000248-zueoyesj 1237 12 cells cell NNS cord-000248-zueoyesj 1238 1 CD40 CD40 NNP cord-000248-zueoyesj 1238 2 is be VBZ cord-000248-zueoyesj 1238 3 not not RB cord-000248-zueoyesj 1238 4 detected detect VBN cord-000248-zueoyesj 1238 5 on on IN cord-000248-zueoyesj 1238 6 human human JJ cord-000248-zueoyesj 1238 7 prostate prostate NN cord-000248-zueoyesj 1238 8 cancer cancer NN cord-000248-zueoyesj 1238 9 cells cell NNS cord-000248-zueoyesj 1238 10 by by IN cord-000248-zueoyesj 1238 11 immunohistologic immunohistologic NN cord-000248-zueoyesj 1238 12 techniques technique NNS cord-000248-zueoyesj 1239 1 Flt3 flt3 NN cord-000248-zueoyesj 1239 2 ligand ligand NN cord-000248-zueoyesj 1239 3 expands expand VBZ cord-000248-zueoyesj 1239 4 dendritic dendritic JJ cord-000248-zueoyesj 1239 5 cell cell NN cord-000248-zueoyesj 1239 6 numbers number NNS cord-000248-zueoyesj 1239 7 in in IN cord-000248-zueoyesj 1239 8 normal normal JJ cord-000248-zueoyesj 1239 9 and and CC cord-000248-zueoyesj 1239 10 malignant malignant JJ cord-000248-zueoyesj 1239 11 murine murine JJ cord-000248-zueoyesj 1239 12 prostate prostate NN cord-000248-zueoyesj 1239 13 Functional functional JJ cord-000248-zueoyesj 1239 14 dichotomy dichotomy NN cord-000248-zueoyesj 1239 15 in in IN cord-000248-zueoyesj 1239 16 CD40 CD40 NNP cord-000248-zueoyesj 1239 17 reciprocally reciprocally RB cord-000248-zueoyesj 1239 18 regulates regulate VBZ cord-000248-zueoyesj 1239 19 effector effector NN cord-000248-zueoyesj 1239 20 T t NN cord-000248-zueoyesj 1239 21 cell cell NN cord-000248-zueoyesj 1239 22 functions function NNS cord-000248-zueoyesj 1239 23 Dendritic dendritic JJ cord-000248-zueoyesj 1239 24 cell cell NN cord-000248-zueoyesj 1239 25 gene gene NN cord-000248-zueoyesj 1239 26 therapy therapy NN cord-000248-zueoyesj 1240 1 CD40 cd40 JJ cord-000248-zueoyesj 1240 2 expression expression NN cord-000248-zueoyesj 1240 3 in in IN cord-000248-zueoyesj 1240 4 prostate prostate NN cord-000248-zueoyesj 1240 5 cancer cancer NN cord-000248-zueoyesj 1240 6 : : : cord-000248-zueoyesj 1240 7 a a DT cord-000248-zueoyesj 1240 8 potential potential JJ cord-000248-zueoyesj 1240 9 diagnostic diagnostic JJ cord-000248-zueoyesj 1240 10 and and CC cord-000248-zueoyesj 1240 11 therapeutic therapeutic JJ cord-000248-zueoyesj 1240 12 molecule molecule NN cord-000248-zueoyesj 1240 13 A a DT cord-000248-zueoyesj 1240 14 population population NN cord-000248-zueoyesj 1240 15 of of IN cord-000248-zueoyesj 1240 16 HLA HLA NNP cord-000248-zueoyesj 1240 17 - - HYPH cord-000248-zueoyesj 1240 18 DR+ DR+ NNP cord-000248-zueoyesj 1240 19 immature immature JJ cord-000248-zueoyesj 1240 20 cells cell NNS cord-000248-zueoyesj 1240 21 accumulates accumulate VBZ cord-000248-zueoyesj 1240 22 in in IN cord-000248-zueoyesj 1240 23 the the DT cord-000248-zueoyesj 1240 24 blood blood NN cord-000248-zueoyesj 1240 25 dendritic dendritic JJ cord-000248-zueoyesj 1240 26 cell cell NN cord-000248-zueoyesj 1240 27 compartment compartment NN cord-000248-zueoyesj 1240 28 of of IN cord-000248-zueoyesj 1240 29 patients patient NNS cord-000248-zueoyesj 1240 30 with with IN cord-000248-zueoyesj 1240 31 different different JJ cord-000248-zueoyesj 1240 32 types type NNS cord-000248-zueoyesj 1240 33 of of IN cord-000248-zueoyesj 1240 34 cancer cancer NN cord-000248-zueoyesj 1240 35 Cytokine cytokine NN cord-000248-zueoyesj 1240 36 - - HYPH cord-000248-zueoyesj 1240 37 mediated mediate VBN cord-000248-zueoyesj 1240 38 protection protection NN cord-000248-zueoyesj 1240 39 of of IN cord-000248-zueoyesj 1240 40 human human JJ cord-000248-zueoyesj 1240 41 dendritic dendritic JJ cord-000248-zueoyesj 1240 42 cells cell NNS cord-000248-zueoyesj 1240 43 from from IN cord-000248-zueoyesj 1240 44 prostate prostate NN cord-000248-zueoyesj 1240 45 cancerinduced cancerinduce VBN cord-000248-zueoyesj 1240 46 apoptosis apoptosis NN cord-000248-zueoyesj 1240 47 is be VBZ cord-000248-zueoyesj 1240 48 regulated regulate VBN cord-000248-zueoyesj 1240 49 by by IN cord-000248-zueoyesj 1240 50 the the DT cord-000248-zueoyesj 1240 51 Bcl-2 Bcl-2 NNP cord-000248-zueoyesj 1240 52 family family NN cord-000248-zueoyesj 1240 53 of of IN cord-000248-zueoyesj 1240 54 proteins protein NNS cord-000248-zueoyesj 1240 55 Fas Fas NNP cord-000248-zueoyesj 1240 56 - - HYPH cord-000248-zueoyesj 1240 57 mediated mediate VBN cord-000248-zueoyesj 1240 58 apoptosis apoptosis NN cord-000248-zueoyesj 1240 59 in in IN cord-000248-zueoyesj 1240 60 human human JJ cord-000248-zueoyesj 1240 61 prostatic prostatic JJ cord-000248-zueoyesj 1240 62 carcinoma carcinoma NN cord-000248-zueoyesj 1240 63 cell cell NN cord-000248-zueoyesj 1240 64 lines line NNS cord-000248-zueoyesj 1240 65 Increased increase VBN cord-000248-zueoyesj 1240 66 function function NN cord-000248-zueoyesj 1240 67 and and CC cord-000248-zueoyesj 1240 68 survival survival NN cord-000248-zueoyesj 1240 69 of of IN cord-000248-zueoyesj 1240 70 IL-15-transduced il-15-transduced NN cord-000248-zueoyesj 1240 71 human human JJ cord-000248-zueoyesj 1240 72 dendritic dendritic JJ cord-000248-zueoyesj 1240 73 cells cell NNS cord-000248-zueoyesj 1240 74 are be VBP cord-000248-zueoyesj 1240 75 mediated mediate VBN cord-000248-zueoyesj 1240 76 by by IN cord-000248-zueoyesj 1240 77 up up IN cord-000248-zueoyesj 1240 78 - - HYPH cord-000248-zueoyesj 1240 79 regulation regulation NN cord-000248-zueoyesj 1240 80 of of IN cord-000248-zueoyesj 1240 81 IL-15Ralpha IL-15Ralpha NNP cord-000248-zueoyesj 1240 82 and and CC cord-000248-zueoyesj 1240 83 Bcl-2 Bcl-2 NNP cord-000248-zueoyesj 1240 84 Expression expression NN cord-000248-zueoyesj 1240 85 and and CC cord-000248-zueoyesj 1240 86 function function NN cord-000248-zueoyesj 1240 87 of of IN cord-000248-zueoyesj 1240 88 the the DT cord-000248-zueoyesj 1240 89 complement complement JJ cord-000248-zueoyesj 1240 90 membrane membrane NN cord-000248-zueoyesj 1240 91 attack attack NN cord-000248-zueoyesj 1240 92 complex complex JJ cord-000248-zueoyesj 1240 93 inhibitor inhibitor NN cord-000248-zueoyesj 1240 94 protectin protectin NNP cord-000248-zueoyesj 1240 95 ( ( -LRB- cord-000248-zueoyesj 1240 96 CD59 CD59 NNP cord-000248-zueoyesj 1240 97 ) ) -RRB- cord-000248-zueoyesj 1240 98 in in IN cord-000248-zueoyesj 1240 99 human human JJ cord-000248-zueoyesj 1240 100 prostate prostate NN cord-000248-zueoyesj 1240 101 cancer cancer NN cord-000248-zueoyesj 1240 102 Increased increase VBD cord-000248-zueoyesj 1240 103 CD59 CD59 NNP cord-000248-zueoyesj 1240 104 protein protein NN cord-000248-zueoyesj 1240 105 expression expression NN cord-000248-zueoyesj 1240 106 predicts predict VBZ cord-000248-zueoyesj 1240 107 a a DT cord-000248-zueoyesj 1240 108 PSA PSA NNP cord-000248-zueoyesj 1240 109 relapse relapse NN cord-000248-zueoyesj 1240 110 in in IN cord-000248-zueoyesj 1240 111 patients patient NNS cord-000248-zueoyesj 1240 112 after after IN cord-000248-zueoyesj 1240 113 radical radical JJ cord-000248-zueoyesj 1240 114 prostatectomy prostatectomy NN cord-000248-zueoyesj 1240 115 Differential differential JJ cord-000248-zueoyesj 1240 116 expression expression NN cord-000248-zueoyesj 1240 117 of of IN cord-000248-zueoyesj 1240 118 complement complement JJ cord-000248-zueoyesj 1240 119 regulatory regulatory JJ cord-000248-zueoyesj 1240 120 proteins protein NNS cord-000248-zueoyesj 1240 121 decay decay VB cord-000248-zueoyesj 1240 122 - - HYPH cord-000248-zueoyesj 1240 123 accelerating accelerate VBG cord-000248-zueoyesj 1240 124 factor factor NN cord-000248-zueoyesj 1240 125 ( ( -LRB- cord-000248-zueoyesj 1240 126 CD55 CD55 NNP cord-000248-zueoyesj 1240 127 ) ) -RRB- cord-000248-zueoyesj 1240 128 , , , cord-000248-zueoyesj 1240 129 membrane membrane NN cord-000248-zueoyesj 1240 130 cofactor cofactor NN cord-000248-zueoyesj 1240 131 protein protein NN cord-000248-zueoyesj 1240 132 ( ( -LRB- cord-000248-zueoyesj 1240 133 CD46 CD46 NNP cord-000248-zueoyesj 1240 134 ) ) -RRB- cord-000248-zueoyesj 1240 135 and and CC cord-000248-zueoyesj 1240 136 CD59 CD59 NNP cord-000248-zueoyesj 1240 137 during during IN cord-000248-zueoyesj 1240 138 human human JJ cord-000248-zueoyesj 1240 139 spermatogenesis spermatogenesis NN cord-000248-zueoyesj 1240 140 Flow flow NN cord-000248-zueoyesj 1240 141 cytometric cytometric NN cord-000248-zueoyesj 1240 142 technique technique NN cord-000248-zueoyesj 1240 143 for for IN cord-000248-zueoyesj 1240 144 determination determination NN cord-000248-zueoyesj 1240 145 of of IN cord-000248-zueoyesj 1240 146 prostasomal prostasomal JJ cord-000248-zueoyesj 1240 147 quantity quantity NN cord-000248-zueoyesj 1240 148 , , , cord-000248-zueoyesj 1240 149 size size NN cord-000248-zueoyesj 1240 150 and and CC cord-000248-zueoyesj 1240 151 expression expression NN cord-000248-zueoyesj 1240 152 of of IN cord-000248-zueoyesj 1240 153 CD10 CD10 NNP cord-000248-zueoyesj 1240 154 , , , cord-000248-zueoyesj 1240 155 CD13 CD13 NNP cord-000248-zueoyesj 1240 156 , , , cord-000248-zueoyesj 1240 157 CD26 CD26 NNP cord-000248-zueoyesj 1240 158 and and CC cord-000248-zueoyesj 1240 159 CD59 CD59 NNP cord-000248-zueoyesj 1240 160 in in IN cord-000248-zueoyesj 1240 161 human human JJ cord-000248-zueoyesj 1240 162 seminal seminal JJ cord-000248-zueoyesj 1240 163 plasma plasma NN cord-000248-zueoyesj 1240 164 Transfer transfer NN cord-000248-zueoyesj 1240 165 of of IN cord-000248-zueoyesj 1240 166 prostasomal prostasomal NNP cord-000248-zueoyesj 1240 167 CD59 CD59 NNP cord-000248-zueoyesj 1240 168 to to IN cord-000248-zueoyesj 1240 169 CD59-deficient cd59-deficient CD cord-000248-zueoyesj 1240 170 red red JJ cord-000248-zueoyesj 1240 171 blood blood NN cord-000248-zueoyesj 1240 172 cells cell NNS cord-000248-zueoyesj 1240 173 results result NNS cord-000248-zueoyesj 1240 174 in in IN cord-000248-zueoyesj 1240 175 protection protection NN cord-000248-zueoyesj 1240 176 against against IN cord-000248-zueoyesj 1240 177 complement complement NN cord-000248-zueoyesj 1240 178 - - HYPH cord-000248-zueoyesj 1240 179 mediated mediate VBN cord-000248-zueoyesj 1240 180 hemolysis hemolysis NN cord-000248-zueoyesj 1240 181 Identification identification NN cord-000248-zueoyesj 1240 182 of of IN cord-000248-zueoyesj 1240 183 extracellular extracellular JJ cord-000248-zueoyesj 1240 184 delta delta NN cord-000248-zueoyesj 1240 185 - - HYPH cord-000248-zueoyesj 1240 186 catenin catenin NN cord-000248-zueoyesj 1240 187 accumulation accumulation NN cord-000248-zueoyesj 1240 188 for for IN cord-000248-zueoyesj 1240 189 prostate prostate NN cord-000248-zueoyesj 1240 190 cancer cancer NN cord-000248-zueoyesj 1240 191 detection detection NN cord-000248-zueoyesj 1241 1 Possible possible JJ cord-000248-zueoyesj 1241 2 immunoprotective immunoprotective JJ cord-000248-zueoyesj 1241 3 and and CC cord-000248-zueoyesj 1241 4 angiogenesis angiogenesis NN cord-000248-zueoyesj 1241 5 - - HYPH cord-000248-zueoyesj 1241 6 promoting promote VBG cord-000248-zueoyesj 1241 7 roles role NNS cord-000248-zueoyesj 1241 8 for for IN cord-000248-zueoyesj 1241 9 malignant malignant JJ cord-000248-zueoyesj 1241 10 cell cell NN cord-000248-zueoyesj 1241 11 - - HYPH cord-000248-zueoyesj 1241 12 derived derive VBN cord-000248-zueoyesj 1241 13 prostasomes prostasome NNS cord-000248-zueoyesj 1241 14 : : : cord-000248-zueoyesj 1241 15 a a DT cord-000248-zueoyesj 1241 16 new new JJ cord-000248-zueoyesj 1241 17 paradigm paradigm NN cord-000248-zueoyesj 1241 18 for for IN cord-000248-zueoyesj 1241 19 prostatic prostatic JJ cord-000248-zueoyesj 1241 20 cancer cancer NN cord-000248-zueoyesj 1241 21 ? ? . cord-000248-zueoyesj 1242 1 Complement complement JJ cord-000248-zueoyesj 1242 2 resistance resistance NN cord-000248-zueoyesj 1242 3 of of IN cord-000248-zueoyesj 1242 4 human human JJ cord-000248-zueoyesj 1242 5 carcinoma carcinoma NN cord-000248-zueoyesj 1242 6 cells cell NNS cord-000248-zueoyesj 1242 7 depends depend VBZ cord-000248-zueoyesj 1242 8 on on IN cord-000248-zueoyesj 1242 9 membrane membrane NN cord-000248-zueoyesj 1242 10 regulatory regulatory JJ cord-000248-zueoyesj 1242 11 proteins protein NNS cord-000248-zueoyesj 1242 12 , , , cord-000248-zueoyesj 1242 13 protein protein NN cord-000248-zueoyesj 1242 14 kinases kinase NNS cord-000248-zueoyesj 1242 15 and and CC cord-000248-zueoyesj 1242 16 sialic sialic NN cord-000248-zueoyesj 1242 17 acid acid NN cord-000248-zueoyesj 1243 1 The the DT cord-000248-zueoyesj 1243 2 nuclear nuclear JJ cord-000248-zueoyesj 1243 3 lamina lamina NN cord-000248-zueoyesj 1243 4 . . . cord-000248-zueoyesj 1244 1 Both both CC cord-000248-zueoyesj 1244 2 a a DT cord-000248-zueoyesj 1244 3 structural structural JJ cord-000248-zueoyesj 1244 4 framework framework NN cord-000248-zueoyesj 1244 5 and and CC cord-000248-zueoyesj 1244 6 a a DT cord-000248-zueoyesj 1244 7 platform platform NN cord-000248-zueoyesj 1244 8 for for IN cord-000248-zueoyesj 1244 9 genome genome NN cord-000248-zueoyesj 1244 10 organization organization NN cord-000248-zueoyesj 1245 1 The the DT cord-000248-zueoyesj 1245 2 nuclear nuclear JJ cord-000248-zueoyesj 1245 3 envelope envelope NN cord-000248-zueoyesj 1245 4 , , , cord-000248-zueoyesj 1245 5 a a DT cord-000248-zueoyesj 1245 6 key key JJ cord-000248-zueoyesj 1245 7 structure structure NN cord-000248-zueoyesj 1245 8 in in IN cord-000248-zueoyesj 1245 9 cellular cellular JJ cord-000248-zueoyesj 1245 10 integrity integrity NN cord-000248-zueoyesj 1245 11 and and CC cord-000248-zueoyesj 1245 12 gene gene NN cord-000248-zueoyesj 1245 13 expression expression NN cord-000248-zueoyesj 1245 14 Mouse Mouse NNP cord-000248-zueoyesj 1245 15 models model NNS cord-000248-zueoyesj 1245 16 of of IN cord-000248-zueoyesj 1245 17 the the DT cord-000248-zueoyesj 1245 18 laminopathies laminopathies NNP cord-000248-zueoyesj 1245 19 Laminopathies Laminopathies NNP cord-000248-zueoyesj 1245 20 ' ' POS cord-000248-zueoyesj 1245 21 ' ' '' cord-000248-zueoyesj 1245 22 : : : cord-000248-zueoyesj 1245 23 a a DT cord-000248-zueoyesj 1245 24 wide wide JJ cord-000248-zueoyesj 1245 25 spectrum spectrum NN cord-000248-zueoyesj 1245 26 of of IN cord-000248-zueoyesj 1245 27 human human JJ cord-000248-zueoyesj 1245 28 diseases disease NNS cord-000248-zueoyesj 1245 29 Phenomics phenomic NNS cord-000248-zueoyesj 1245 30 and and CC cord-000248-zueoyesj 1245 31 lamins lamin NNS cord-000248-zueoyesj 1245 32 : : : cord-000248-zueoyesj 1245 33 from from IN cord-000248-zueoyesj 1245 34 disease disease NN cord-000248-zueoyesj 1245 35 to to IN cord-000248-zueoyesj 1245 36 therapy therapy NN cord-000248-zueoyesj 1245 37 Adult adult NN cord-000248-zueoyesj 1245 38 stem stem NN cord-000248-zueoyesj 1245 39 cell cell NN cord-000248-zueoyesj 1245 40 maintenance maintenance NN cord-000248-zueoyesj 1245 41 and and CC cord-000248-zueoyesj 1245 42 tissue tissue NN cord-000248-zueoyesj 1245 43 regeneration regeneration NN cord-000248-zueoyesj 1245 44 in in IN cord-000248-zueoyesj 1245 45 the the DT cord-000248-zueoyesj 1245 46 ageing age VBG cord-000248-zueoyesj 1245 47 context context NN cord-000248-zueoyesj 1245 48 : : : cord-000248-zueoyesj 1245 49 the the DT cord-000248-zueoyesj 1245 50 role role NN cord-000248-zueoyesj 1245 51 for for IN cord-000248-zueoyesj 1245 52 A a DT cord-000248-zueoyesj 1245 53 - - HYPH cord-000248-zueoyesj 1245 54 type type NN cord-000248-zueoyesj 1245 55 lamins lamin NNS cord-000248-zueoyesj 1245 56 as as IN cord-000248-zueoyesj 1245 57 intrinsic intrinsic JJ cord-000248-zueoyesj 1245 58 modulators modulator NNS cord-000248-zueoyesj 1245 59 of of IN cord-000248-zueoyesj 1245 60 ageing age VBG cord-000248-zueoyesj 1245 61 in in IN cord-000248-zueoyesj 1245 62 adult adult NN cord-000248-zueoyesj 1245 63 stem stem NN cord-000248-zueoyesj 1245 64 cells cell NNS cord-000248-zueoyesj 1245 65 and and CC cord-000248-zueoyesj 1245 66 their -PRON- PRP$ cord-000248-zueoyesj 1245 67 niches niche NNS cord-000248-zueoyesj 1245 68 Nuclear nuclear JJ cord-000248-zueoyesj 1245 69 lamin lamin NN cord-000248-zueoyesj 1245 70 A A NNP cord-000248-zueoyesj 1245 71 / / SYM cord-000248-zueoyesj 1245 72 C C NNP cord-000248-zueoyesj 1245 73 deficiency deficiency NN cord-000248-zueoyesj 1245 74 induces induce VBZ cord-000248-zueoyesj 1245 75 defects defect NNS cord-000248-zueoyesj 1245 76 in in IN cord-000248-zueoyesj 1245 77 cell cell NN cord-000248-zueoyesj 1245 78 mechanics mechanic NNS cord-000248-zueoyesj 1245 79 , , , cord-000248-zueoyesj 1245 80 polarization polarization NN cord-000248-zueoyesj 1245 81 , , , cord-000248-zueoyesj 1245 82 and and CC cord-000248-zueoyesj 1245 83 migration migration NN cord-000248-zueoyesj 1245 84 Lamin Lamin NNP cord-000248-zueoyesj 1245 85 A A NNP cord-000248-zueoyesj 1245 86 / / SYM cord-000248-zueoyesj 1245 87 C C NNP cord-000248-zueoyesj 1245 88 deficiency deficiency NN cord-000248-zueoyesj 1245 89 causes cause VBZ cord-000248-zueoyesj 1245 90 defective defective JJ cord-000248-zueoyesj 1245 91 nuclear nuclear JJ cord-000248-zueoyesj 1245 92 mechanics mechanic NNS cord-000248-zueoyesj 1245 93 and and CC cord-000248-zueoyesj 1245 94 mechanotransduction mechanotransduction NN cord-000248-zueoyesj 1245 95 Decreased decrease VBD cord-000248-zueoyesj 1245 96 mechanical mechanical JJ cord-000248-zueoyesj 1245 97 stiffness stiffness NN cord-000248-zueoyesj 1245 98 in in IN cord-000248-zueoyesj 1245 99 LMNA2/2 LMNA2/2 NNP cord-000248-zueoyesj 1245 100 cells cell NNS cord-000248-zueoyesj 1245 101 is be VBZ cord-000248-zueoyesj 1245 102 caused cause VBN cord-000248-zueoyesj 1245 103 by by IN cord-000248-zueoyesj 1245 104 defective defective JJ cord-000248-zueoyesj 1245 105 nucleo nucleo JJ cord-000248-zueoyesj 1245 106 - - JJ cord-000248-zueoyesj 1245 107 cytoskeletal cytoskeletal JJ cord-000248-zueoyesj 1245 108 integrity integrity NN cord-000248-zueoyesj 1245 109 : : : cord-000248-zueoyesj 1246 1 implications implication NNS cord-000248-zueoyesj 1246 2 for for IN cord-000248-zueoyesj 1246 3 the the DT cord-000248-zueoyesj 1246 4 development development NN cord-000248-zueoyesj 1246 5 of of IN cord-000248-zueoyesj 1246 6 laminopathies laminopathies NNP cord-000248-zueoyesj 1246 7 Stabilization Stabilization NNP cord-000248-zueoyesj 1246 8 of of IN cord-000248-zueoyesj 1246 9 the the DT cord-000248-zueoyesj 1246 10 retinoblastoma retinoblastoma NN cord-000248-zueoyesj 1246 11 protein protein NN cord-000248-zueoyesj 1246 12 by by IN cord-000248-zueoyesj 1246 13 A a DT cord-000248-zueoyesj 1246 14 - - HYPH cord-000248-zueoyesj 1246 15 type type NN cord-000248-zueoyesj 1246 16 nuclear nuclear JJ cord-000248-zueoyesj 1246 17 lamins lamin NNS cord-000248-zueoyesj 1246 18 is be VBZ cord-000248-zueoyesj 1246 19 required require VBN cord-000248-zueoyesj 1246 20 for for IN cord-000248-zueoyesj 1246 21 INK4A INK4A NNS cord-000248-zueoyesj 1246 22 - - HYPH cord-000248-zueoyesj 1246 23 mediated mediate VBN cord-000248-zueoyesj 1246 24 cell cell NN cord-000248-zueoyesj 1246 25 cycle cycle NN cord-000248-zueoyesj 1246 26 arrest arrest NN cord-000248-zueoyesj 1247 1 A a DT cord-000248-zueoyesj 1247 2 - - HYPH cord-000248-zueoyesj 1247 3 type type NN cord-000248-zueoyesj 1247 4 lamins lamin NNS cord-000248-zueoyesj 1247 5 regulate regulate VBP cord-000248-zueoyesj 1247 6 retinoblastoma retinoblastoma NN cord-000248-zueoyesj 1247 7 protein protein NN cord-000248-zueoyesj 1247 8 function function NN cord-000248-zueoyesj 1247 9 by by IN cord-000248-zueoyesj 1247 10 promoting promote VBG cord-000248-zueoyesj 1247 11 subnuclear subnuclear JJ cord-000248-zueoyesj 1247 12 localization localization NN cord-000248-zueoyesj 1247 13 and and CC cord-000248-zueoyesj 1247 14 preventing prevent VBG cord-000248-zueoyesj 1247 15 proteasomal proteasomal JJ cord-000248-zueoyesj 1247 16 degradation degradation NN cord-000248-zueoyesj 1248 1 Nuclear nuclear JJ cord-000248-zueoyesj 1248 2 lamin lamin NN cord-000248-zueoyesj 1248 3 A A NNP cord-000248-zueoyesj 1248 4 inhibits inhibit VBZ cord-000248-zueoyesj 1248 5 adipocyte adipocyte NN cord-000248-zueoyesj 1248 6 differentiation differentiation NN cord-000248-zueoyesj 1248 7 : : : cord-000248-zueoyesj 1249 1 implications implication NNS cord-000248-zueoyesj 1249 2 for for IN cord-000248-zueoyesj 1249 3 Dunnigan Dunnigan NNP cord-000248-zueoyesj 1249 4 - - HYPH cord-000248-zueoyesj 1249 5 type type NN cord-000248-zueoyesj 1249 6 familial familial JJ cord-000248-zueoyesj 1249 7 partial partial JJ cord-000248-zueoyesj 1249 8 lipodystrophy lipodystrophy NN cord-000248-zueoyesj 1249 9 A a NN cord-000248-zueoyesj 1249 10 - - HYPH cord-000248-zueoyesj 1249 11 type type NN cord-000248-zueoyesj 1249 12 lamins lamin NNS cord-000248-zueoyesj 1249 13 : : : cord-000248-zueoyesj 1249 14 guardians guardian NNS cord-000248-zueoyesj 1249 15 of of IN cord-000248-zueoyesj 1249 16 the the DT cord-000248-zueoyesj 1249 17 soma soma NNP cord-000248-zueoyesj 1249 18 ? ? . cord-000248-zueoyesj 1250 1 Downregulation Downregulation NNP cord-000248-zueoyesj 1250 2 of of IN cord-000248-zueoyesj 1250 3 human human JJ cord-000248-zueoyesj 1250 4 X x NN cord-000248-zueoyesj 1250 5 - - HYPH cord-000248-zueoyesj 1250 6 box box NN cord-000248-zueoyesj 1250 7 binding bind VBG cord-000248-zueoyesj 1250 8 protein protein NN cord-000248-zueoyesj 1250 9 1 1 CD cord-000248-zueoyesj 1250 10 ( ( -LRB- cord-000248-zueoyesj 1250 11 hXBP-1 hxbp-1 CD cord-000248-zueoyesj 1250 12 ) ) -RRB- cord-000248-zueoyesj 1250 13 expression expression NN cord-000248-zueoyesj 1250 14 correlates correlate VBZ cord-000248-zueoyesj 1250 15 with with IN cord-000248-zueoyesj 1250 16 tumor tumor NN cord-000248-zueoyesj 1250 17 progression progression NN cord-000248-zueoyesj 1250 18 in in IN cord-000248-zueoyesj 1250 19 human human JJ cord-000248-zueoyesj 1250 20 prostate prostate NN cord-000248-zueoyesj 1250 21 cancers cancer NNS cord-000248-zueoyesj 1251 1 The the DT cord-000248-zueoyesj 1251 2 proapoptotic proapoptotic JJ cord-000248-zueoyesj 1251 3 kinase kinase VBZ cord-000248-zueoyesj 1251 4 Mst1 Mst1 NNP cord-000248-zueoyesj 1251 5 and and CC cord-000248-zueoyesj 1251 6 its -PRON- PRP$ cord-000248-zueoyesj 1251 7 caspase caspase NN cord-000248-zueoyesj 1251 8 cleavage cleavage NN cord-000248-zueoyesj 1251 9 products product NNS cord-000248-zueoyesj 1251 10 are be VBP cord-000248-zueoyesj 1251 11 direct direct JJ cord-000248-zueoyesj 1251 12 inhibitors inhibitor NNS cord-000248-zueoyesj 1251 13 of of IN cord-000248-zueoyesj 1251 14 Akt1 Akt1 NNP cord-000248-zueoyesj 1251 15 Gene Gene NNP cord-000248-zueoyesj 1251 16 network network NN cord-000248-zueoyesj 1251 17 and and CC cord-000248-zueoyesj 1251 18 canonical canonical JJ cord-000248-zueoyesj 1251 19 pathway pathway NN cord-000248-zueoyesj 1251 20 analysis analysis NN cord-000248-zueoyesj 1251 21 in in IN cord-000248-zueoyesj 1251 22 prostate prostate NN cord-000248-zueoyesj 1251 23 cancer cancer NN cord-000248-zueoyesj 1251 24 : : : cord-000248-zueoyesj 1251 25 a a DT cord-000248-zueoyesj 1251 26 microarray microarray NN cord-000248-zueoyesj 1251 27 study study NN cord-000248-zueoyesj 1251 28 Biomarker Biomarker NNP cord-000248-zueoyesj 1251 29 expression expression NN cord-000248-zueoyesj 1251 30 patterns pattern NNS cord-000248-zueoyesj 1251 31 that that WDT cord-000248-zueoyesj 1251 32 correlate correlate VBP cord-000248-zueoyesj 1251 33 with with IN cord-000248-zueoyesj 1251 34 high high JJ cord-000248-zueoyesj 1251 35 grade grade NN cord-000248-zueoyesj 1251 36 features feature NNS cord-000248-zueoyesj 1251 37 in in IN cord-000248-zueoyesj 1251 38 treatment treatment NN cord-000248-zueoyesj 1251 39 naive naive JJ cord-000248-zueoyesj 1251 40 , , , cord-000248-zueoyesj 1251 41 organ organ NN cord-000248-zueoyesj 1251 42 - - HYPH cord-000248-zueoyesj 1251 43 confined confine VBN cord-000248-zueoyesj 1251 44 prostate prostate NN cord-000248-zueoyesj 1251 45 cancer cancer NN cord-000248-zueoyesj 1251 46 NF nf NN cord-000248-zueoyesj 1251 47 - - HYPH cord-000248-zueoyesj 1251 48 kappaB2 kappab2 NN cord-000248-zueoyesj 1251 49 processing processing NN cord-000248-zueoyesj 1251 50 and and CC cord-000248-zueoyesj 1251 51 p52 p52 NN cord-000248-zueoyesj 1251 52 nuclear nuclear JJ cord-000248-zueoyesj 1251 53 accumulation accumulation NN cord-000248-zueoyesj 1251 54 after after IN cord-000248-zueoyesj 1251 55 androgenic androgenic JJ cord-000248-zueoyesj 1251 56 stimulation stimulation NN cord-000248-zueoyesj 1251 57 of of IN cord-000248-zueoyesj 1251 58 LNCaP lncap NN cord-000248-zueoyesj 1251 59 prostate prostate NN cord-000248-zueoyesj 1251 60 cancer cancer NN cord-000248-zueoyesj 1251 61 cells cell NNS cord-000248-zueoyesj 1252 1 Diverse diverse JJ cord-000248-zueoyesj 1252 2 effects effect NNS cord-000248-zueoyesj 1252 3 of of IN cord-000248-zueoyesj 1252 4 zinc zinc NN cord-000248-zueoyesj 1252 5 on on IN cord-000248-zueoyesj 1252 6 NF NF NNP cord-000248-zueoyesj 1252 7 - - HYPH cord-000248-zueoyesj 1252 8 kappaB kappaB NNP cord-000248-zueoyesj 1252 9 and and CC cord-000248-zueoyesj 1252 10 AP-1 AP-1 NNP cord-000248-zueoyesj 1252 11 transcription transcription NN cord-000248-zueoyesj 1252 12 factors factor NNS cord-000248-zueoyesj 1252 13 : : : cord-000248-zueoyesj 1252 14 implications implication NNS cord-000248-zueoyesj 1252 15 for for IN cord-000248-zueoyesj 1252 16 prostate prostate NN cord-000248-zueoyesj 1252 17 cancer cancer NN cord-000248-zueoyesj 1252 18 progression progression NN cord-000248-zueoyesj 1252 19 Nuclear nuclear JJ cord-000248-zueoyesj 1252 20 factor factor NN cord-000248-zueoyesj 1253 1 -kappaB -kappaB NNP cord-000248-zueoyesj 1253 2 nuclear nuclear JJ cord-000248-zueoyesj 1253 3 localization localization NN cord-000248-zueoyesj 1253 4 is be VBZ cord-000248-zueoyesj 1253 5 predictive predictive JJ cord-000248-zueoyesj 1253 6 of of IN cord-000248-zueoyesj 1253 7 biochemical biochemical JJ cord-000248-zueoyesj 1253 8 recurrence recurrence NN cord-000248-zueoyesj 1253 9 in in IN cord-000248-zueoyesj 1253 10 patients patient NNS cord-000248-zueoyesj 1253 11 with with IN cord-000248-zueoyesj 1253 12 positive positive JJ cord-000248-zueoyesj 1253 13 margin margin NN cord-000248-zueoyesj 1253 14 prostate prostate NN cord-000248-zueoyesj 1253 15 cancer cancer NN cord-000248-zueoyesj 1253 16 Id-1 Id-1 NNP cord-000248-zueoyesj 1253 17 expression expression NN cord-000248-zueoyesj 1253 18 promotes promote VBZ cord-000248-zueoyesj 1253 19 cell cell NN cord-000248-zueoyesj 1253 20 survival survival NN cord-000248-zueoyesj 1253 21 through through IN cord-000248-zueoyesj 1253 22 activation activation NN cord-000248-zueoyesj 1253 23 of of IN cord-000248-zueoyesj 1253 24 NF NF NNP cord-000248-zueoyesj 1253 25 - - HYPH cord-000248-zueoyesj 1253 26 kappaB kappaB NNP cord-000248-zueoyesj 1253 27 signalling signal VBG cord-000248-zueoyesj 1253 28 pathway pathway NN cord-000248-zueoyesj 1253 29 in in IN cord-000248-zueoyesj 1253 30 prostate prostate NN cord-000248-zueoyesj 1253 31 cancer cancer NN cord-000248-zueoyesj 1253 32 cells cell NNS cord-000248-zueoyesj 1253 33 Suppression suppression NN cord-000248-zueoyesj 1253 34 of of IN cord-000248-zueoyesj 1253 35 hormone hormone NN cord-000248-zueoyesj 1253 36 - - HYPH cord-000248-zueoyesj 1253 37 refractory refractory JJ cord-000248-zueoyesj 1253 38 prostate prostate NN cord-000248-zueoyesj 1253 39 cancer cancer NN cord-000248-zueoyesj 1253 40 by by IN cord-000248-zueoyesj 1253 41 a a DT cord-000248-zueoyesj 1253 42 novel novel JJ cord-000248-zueoyesj 1253 43 nuclear nuclear JJ cord-000248-zueoyesj 1253 44 factor factor NN cord-000248-zueoyesj 1253 45 kappaB kappaB NNP cord-000248-zueoyesj 1253 46 inhibitor inhibitor NN cord-000248-zueoyesj 1253 47 in in IN cord-000248-zueoyesj 1253 48 nude nude JJ cord-000248-zueoyesj 1253 49 mice mouse NNS cord-000248-zueoyesj 1253 50 Mechanisms Mechanisms NNPS cord-000248-zueoyesj 1253 51 of of IN cord-000248-zueoyesj 1253 52 constitutive constitutive JJ cord-000248-zueoyesj 1253 53 NF nf NN cord-000248-zueoyesj 1253 54 - - HYPH cord-000248-zueoyesj 1253 55 kappaB kappaB NNP cord-000248-zueoyesj 1253 56 activation activation NN cord-000248-zueoyesj 1253 57 in in IN cord-000248-zueoyesj 1253 58 human human JJ cord-000248-zueoyesj 1253 59 prostate prostate NN cord-000248-zueoyesj 1253 60 cancer cancer NN cord-000248-zueoyesj 1253 61 cells cell NNS cord-000248-zueoyesj 1254 1 Bcl-2 Bcl-2 NNP cord-000248-zueoyesj 1254 2 suppresses suppress VBZ cord-000248-zueoyesj 1254 3 apoptosis apoptosis NN cord-000248-zueoyesj 1254 4 resulting result VBG cord-000248-zueoyesj 1254 5 from from IN cord-000248-zueoyesj 1254 6 disruption disruption NN cord-000248-zueoyesj 1254 7 of of IN cord-000248-zueoyesj 1254 8 the the DT cord-000248-zueoyesj 1254 9 NF nf NN cord-000248-zueoyesj 1254 10 - - HYPH cord-000248-zueoyesj 1254 11 kappa kappa NNP cord-000248-zueoyesj 1254 12 B B NNP cord-000248-zueoyesj 1254 13 survival survival NN cord-000248-zueoyesj 1254 14 pathway pathway NN cord-000248-zueoyesj 1254 15 Gene Gene NNP cord-000248-zueoyesj 1254 16 expression expression NN cord-000248-zueoyesj 1254 17 profiling profiling NN cord-000248-zueoyesj 1254 18 of of IN cord-000248-zueoyesj 1254 19 human human JJ cord-000248-zueoyesj 1254 20 prostate prostate NN cord-000248-zueoyesj 1254 21 cancer cancer NN cord-000248-zueoyesj 1254 22 stem stem NN cord-000248-zueoyesj 1254 23 cells cell NNS cord-000248-zueoyesj 1255 1 reveals reveal VBZ cord-000248-zueoyesj 1255 2 a a DT cord-000248-zueoyesj 1255 3 proinflammatory proinflammatory JJ cord-000248-zueoyesj 1255 4 phenotype phenotype NN cord-000248-zueoyesj 1255 5 and and CC cord-000248-zueoyesj 1255 6 the the DT cord-000248-zueoyesj 1255 7 importance importance NN cord-000248-zueoyesj 1255 8 of of IN cord-000248-zueoyesj 1255 9 extracellular extracellular JJ cord-000248-zueoyesj 1255 10 matrix matrix NN cord-000248-zueoyesj 1255 11 interactions interaction NNS cord-000248-zueoyesj 1255 12 Molecular molecular JJ cord-000248-zueoyesj 1255 13 imaging imaging NN cord-000248-zueoyesj 1255 14 of of IN cord-000248-zueoyesj 1255 15 NF NF NNP cord-000248-zueoyesj 1255 16 - - HYPH cord-000248-zueoyesj 1255 17 kappaB kappaB NNP cord-000248-zueoyesj 1255 18 in in IN cord-000248-zueoyesj 1255 19 prostate prostate NN cord-000248-zueoyesj 1255 20 tissue tissue NN cord-000248-zueoyesj 1255 21 after after IN cord-000248-zueoyesj 1255 22 systemic systemic JJ cord-000248-zueoyesj 1255 23 administration administration NN cord-000248-zueoyesj 1255 24 of of IN cord-000248-zueoyesj 1255 25 IL-1 IL-1 NNP cord-000248-zueoyesj 1255 26 beta beta NNP cord-000248-zueoyesj 1255 27 TNF TNF NNP cord-000248-zueoyesj 1255 28 / / SYM cord-000248-zueoyesj 1255 29 IL-1 IL-1 NNP cord-000248-zueoyesj 1255 30 / / SYM cord-000248-zueoyesj 1255 31 NIK NIK NNP cord-000248-zueoyesj 1255 32 / / SYM cord-000248-zueoyesj 1255 33 NF NF NNP cord-000248-zueoyesj 1255 34 - - HYPH cord-000248-zueoyesj 1255 35 kappa kappa NN cord-000248-zueoyesj 1255 36 B B NNP cord-000248-zueoyesj 1255 37 transduction transduction NN cord-000248-zueoyesj 1255 38 pathway pathway NN cord-000248-zueoyesj 1255 39 : : : cord-000248-zueoyesj 1255 40 a a DT cord-000248-zueoyesj 1255 41 comparative comparative JJ cord-000248-zueoyesj 1255 42 study study NN cord-000248-zueoyesj 1255 43 in in IN cord-000248-zueoyesj 1255 44 normal normal JJ cord-000248-zueoyesj 1255 45 and and CC cord-000248-zueoyesj 1255 46 pathological pathological JJ cord-000248-zueoyesj 1255 47 human human JJ cord-000248-zueoyesj 1255 48 prostate prostate NN cord-000248-zueoyesj 1255 49 ( ( -LRB- cord-000248-zueoyesj 1255 50 benign benign JJ cord-000248-zueoyesj 1255 51 hyperplasia hyperplasia NN cord-000248-zueoyesj 1255 52 and and CC cord-000248-zueoyesj 1255 53 carcinoma carcinoma NN cord-000248-zueoyesj 1255 54 ) ) -RRB- cord-000248-zueoyesj 1256 1 Proteasome Proteasome NNP cord-000248-zueoyesj 1256 2 inhibitors inhibitor NNS cord-000248-zueoyesj 1256 3 induce induce VBP cord-000248-zueoyesj 1256 4 apoptosis apoptosis NN cord-000248-zueoyesj 1256 5 of of IN cord-000248-zueoyesj 1256 6 prostate prostate NN cord-000248-zueoyesj 1256 7 cancer cancer NN cord-000248-zueoyesj 1256 8 cells cell NNS cord-000248-zueoyesj 1256 9 by by IN cord-000248-zueoyesj 1256 10 inducing induce VBG cord-000248-zueoyesj 1256 11 nuclear nuclear JJ cord-000248-zueoyesj 1256 12 translocation translocation NN cord-000248-zueoyesj 1256 13 of of IN cord-000248-zueoyesj 1256 14 IkappaBalpha IkappaBalpha NNP cord-000248-zueoyesj 1256 15 Targeting target VBG cord-000248-zueoyesj 1256 16 the the DT cord-000248-zueoyesj 1256 17 receptor receptor NN cord-000248-zueoyesj 1256 18 activator activator NN cord-000248-zueoyesj 1256 19 of of IN cord-000248-zueoyesj 1256 20 nuclear nuclear JJ cord-000248-zueoyesj 1256 21 factor factor NN cord-000248-zueoyesj 1256 22 - - : cord-000248-zueoyesj 1256 23 kappaB kappaB NNP cord-000248-zueoyesj 1256 24 ( ( -LRB- cord-000248-zueoyesj 1256 25 RANK rank NN cord-000248-zueoyesj 1256 26 ) ) -RRB- cord-000248-zueoyesj 1256 27 ligand ligand NN cord-000248-zueoyesj 1256 28 in in IN cord-000248-zueoyesj 1256 29 prostate prostate NN cord-000248-zueoyesj 1256 30 cancer cancer NN cord-000248-zueoyesj 1256 31 bone bone NN cord-000248-zueoyesj 1256 32 metastases metastase VBZ cord-000248-zueoyesj 1256 33 Pomegranate Pomegranate NNP cord-000248-zueoyesj 1256 34 extract extract NN cord-000248-zueoyesj 1256 35 inhibits inhibit VBZ cord-000248-zueoyesj 1256 36 androgen androgen NN cord-000248-zueoyesj 1256 37 - - HYPH cord-000248-zueoyesj 1256 38 independent independent JJ cord-000248-zueoyesj 1256 39 prostate prostate NN cord-000248-zueoyesj 1256 40 cancer cancer NN cord-000248-zueoyesj 1256 41 growth growth NN cord-000248-zueoyesj 1256 42 through through IN cord-000248-zueoyesj 1256 43 a a DT cord-000248-zueoyesj 1256 44 nuclear nuclear JJ cord-000248-zueoyesj 1256 45 factor factor NN cord-000248-zueoyesj 1256 46 - - HYPH cord-000248-zueoyesj 1256 47 kappaB kappaB NNP cord-000248-zueoyesj 1256 48 - - HYPH cord-000248-zueoyesj 1256 49 dependent dependent JJ cord-000248-zueoyesj 1256 50 mechanism mechanism NN cord-000248-zueoyesj 1257 1 The the DT cord-000248-zueoyesj 1257 2 nuclear nuclear JJ cord-000248-zueoyesj 1257 3 factor factor NN cord-000248-zueoyesj 1257 4 - - : cord-000248-zueoyesj 1257 5 kappaB kappaB NNP cord-000248-zueoyesj 1257 6 pathway pathway NN cord-000248-zueoyesj 1257 7 controls control VBZ cord-000248-zueoyesj 1257 8 the the DT cord-000248-zueoyesj 1257 9 progression progression NN cord-000248-zueoyesj 1257 10 of of IN cord-000248-zueoyesj 1257 11 prostate prostate NN cord-000248-zueoyesj 1257 12 cancer cancer NN cord-000248-zueoyesj 1257 13 to to IN cord-000248-zueoyesj 1257 14 androgenindependent androgenindependent NN cord-000248-zueoyesj 1257 15 growth growth NN cord-000248-zueoyesj 1258 1 A a DT cord-000248-zueoyesj 1258 2 new new JJ cord-000248-zueoyesj 1258 3 prostate prostate NN cord-000248-zueoyesj 1258 4 cancer cancer NN cord-000248-zueoyesj 1258 5 therapeutic therapeutic JJ cord-000248-zueoyesj 1258 6 approach approach NN cord-000248-zueoyesj 1258 7 : : : cord-000248-zueoyesj 1258 8 combination combination NN cord-000248-zueoyesj 1258 9 of of IN cord-000248-zueoyesj 1258 10 androgen androgen NN cord-000248-zueoyesj 1258 11 ablation ablation NN cord-000248-zueoyesj 1258 12 with with IN cord-000248-zueoyesj 1258 13 COX-2 cox-2 JJ cord-000248-zueoyesj 1258 14 inhibitor inhibitor NN cord-000248-zueoyesj 1258 15 Inhibitory inhibitory JJ cord-000248-zueoyesj 1258 16 effect effect NN cord-000248-zueoyesj 1258 17 of of IN cord-000248-zueoyesj 1258 18 snake snake NN cord-000248-zueoyesj 1258 19 venom venom NN cord-000248-zueoyesj 1258 20 toxin toxin NN cord-000248-zueoyesj 1258 21 from from IN cord-000248-zueoyesj 1258 22 Vipera Vipera NNP cord-000248-zueoyesj 1258 23 lebetina lebetina NNP cord-000248-zueoyesj 1258 24 turanica turanica NNP cord-000248-zueoyesj 1258 25 on on IN cord-000248-zueoyesj 1258 26 hormone hormone NN cord-000248-zueoyesj 1258 27 - - HYPH cord-000248-zueoyesj 1258 28 refractory refractory JJ cord-000248-zueoyesj 1258 29 human human JJ cord-000248-zueoyesj 1258 30 prostate prostate NN cord-000248-zueoyesj 1258 31 cancer cancer NN cord-000248-zueoyesj 1258 32 cell cell NN cord-000248-zueoyesj 1258 33 growth growth NN cord-000248-zueoyesj 1258 34 : : : cord-000248-zueoyesj 1258 35 induction induction NN cord-000248-zueoyesj 1258 36 of of IN cord-000248-zueoyesj 1258 37 apoptosis apoptosis NN cord-000248-zueoyesj 1258 38 through through IN cord-000248-zueoyesj 1258 39 inactivation inactivation NN cord-000248-zueoyesj 1258 40 of of IN cord-000248-zueoyesj 1258 41 nuclear nuclear JJ cord-000248-zueoyesj 1258 42 factor factor NN cord-000248-zueoyesj 1258 43 kappaB kappaB NNP cord-000248-zueoyesj 1258 44 Prostate Prostate NNP cord-000248-zueoyesj 1258 45 cancer cancer NN cord-000248-zueoyesj 1258 46 chemoprevention chemoprevention NN cord-000248-zueoyesj 1258 47 by by IN cord-000248-zueoyesj 1258 48 silibinin silibinin NNP cord-000248-zueoyesj 1258 49 : : : cord-000248-zueoyesj 1259 1 bench bench NN cord-000248-zueoyesj 1259 2 to to IN cord-000248-zueoyesj 1259 3 bedside bedside NN cord-000248-zueoyesj 1259 4 Genistein Genistein NNP cord-000248-zueoyesj 1259 5 inhibits inhibit VBZ cord-000248-zueoyesj 1259 6 radiation radiation NN cord-000248-zueoyesj 1259 7 - - HYPH cord-000248-zueoyesj 1259 8 induced induce VBN cord-000248-zueoyesj 1259 9 activation activation NN cord-000248-zueoyesj 1259 10 of of IN cord-000248-zueoyesj 1259 11 NF NF NNP cord-000248-zueoyesj 1259 12 - - HYPH cord-000248-zueoyesj 1259 13 kappaB kappaB NNP cord-000248-zueoyesj 1259 14 in in IN cord-000248-zueoyesj 1259 15 prostate prostate NN cord-000248-zueoyesj 1259 16 cancer cancer NN cord-000248-zueoyesj 1259 17 cells cell NNS cord-000248-zueoyesj 1259 18 promoting promote VBG cord-000248-zueoyesj 1259 19 apoptosis apoptosis NN cord-000248-zueoyesj 1259 20 and and CC cord-000248-zueoyesj 1259 21 G2 G2 NNP cord-000248-zueoyesj 1259 22 / / SYM cord-000248-zueoyesj 1259 23 M M NNP cord-000248-zueoyesj 1259 24 cell cell NN cord-000248-zueoyesj 1259 25 cycle cycle NN cord-000248-zueoyesj 1259 26 arrest arrest NN cord-000248-zueoyesj 1260 1 NF NF NNP cord-000248-zueoyesj 1260 2 - - HYPH cord-000248-zueoyesj 1260 3 kappaB kappaB NNP cord-000248-zueoyesj 1260 4 inhibition inhibition NN cord-000248-zueoyesj 1260 5 increases increase VBZ cord-000248-zueoyesj 1260 6 chemosensitivity chemosensitivity NN cord-000248-zueoyesj 1260 7 to to IN cord-000248-zueoyesj 1260 8 trichostatin trichostatin NNP cord-000248-zueoyesj 1260 9 A a DT cord-000248-zueoyesj 1260 10 - - HYPH cord-000248-zueoyesj 1260 11 induced induce VBN cord-000248-zueoyesj 1260 12 cell cell NN cord-000248-zueoyesj 1260 13 death death NN cord-000248-zueoyesj 1260 14 of of IN cord-000248-zueoyesj 1260 15 Ki Ki NNP cord-000248-zueoyesj 1260 16 - - HYPH cord-000248-zueoyesj 1260 17 Ras Ras NNP cord-000248-zueoyesj 1260 18 - - HYPH cord-000248-zueoyesj 1260 19 transformed transform VBN cord-000248-zueoyesj 1260 20 human human JJ cord-000248-zueoyesj 1260 21 prostate prostate NN cord-000248-zueoyesj 1260 22 epithelial epithelial NN cord-000248-zueoyesj 1260 23 cells cell NNS cord-000248-zueoyesj 1260 24 Involvement Involvement NNP cord-000248-zueoyesj 1260 25 of of IN cord-000248-zueoyesj 1260 26 the the DT cord-000248-zueoyesj 1260 27 TNF TNF NNP cord-000248-zueoyesj 1260 28 - - HYPH cord-000248-zueoyesj 1260 29 alpha alpha NN cord-000248-zueoyesj 1260 30 autocrine autocrine NN cord-000248-zueoyesj 1260 31 - - HYPH cord-000248-zueoyesj 1260 32 paracrine paracrine NN cord-000248-zueoyesj 1260 33 loop loop NN cord-000248-zueoyesj 1260 34 , , , cord-000248-zueoyesj 1260 35 via via IN cord-000248-zueoyesj 1260 36 NF NF NNP cord-000248-zueoyesj 1260 37 - - HYPH cord-000248-zueoyesj 1260 38 kappaB kappaB NNP cord-000248-zueoyesj 1260 39 and and CC cord-000248-zueoyesj 1260 40 YY1 YY1 NNP cord-000248-zueoyesj 1260 41 , , , cord-000248-zueoyesj 1260 42 in in IN cord-000248-zueoyesj 1260 43 the the DT cord-000248-zueoyesj 1260 44 regulation regulation NN cord-000248-zueoyesj 1260 45 of of IN cord-000248-zueoyesj 1260 46 tumor tumor NN cord-000248-zueoyesj 1260 47 cell cell NN cord-000248-zueoyesj 1260 48 resistance resistance NN cord-000248-zueoyesj 1260 49 to to IN cord-000248-zueoyesj 1261 1 Fas Fas NNP cord-000248-zueoyesj 1261 2 - - HYPH cord-000248-zueoyesj 1261 3 induced induce VBN cord-000248-zueoyesj 1261 4 apoptosis apoptosis NN cord-000248-zueoyesj 1261 5 Estrogens estrogen NNS cord-000248-zueoyesj 1261 6 and and CC cord-000248-zueoyesj 1261 7 antiestrogens antiestrogen VBZ cord-000248-zueoyesj 1261 8 as as IN cord-000248-zueoyesj 1261 9 etiological etiological JJ cord-000248-zueoyesj 1261 10 factors factor NNS cord-000248-zueoyesj 1261 11 and and CC cord-000248-zueoyesj 1261 12 therapeutics therapeutic NNS cord-000248-zueoyesj 1261 13 for for IN cord-000248-zueoyesj 1261 14 prostate prostate NN cord-000248-zueoyesj 1261 15 cancer cancer NN cord-000248-zueoyesj 1261 16 NF nf NN cord-000248-zueoyesj 1261 17 - - HYPH cord-000248-zueoyesj 1261 18 kappaB kappaB NNP cord-000248-zueoyesj 1261 19 activation activation NN cord-000248-zueoyesj 1262 1 upregulates upregulate VBZ cord-000248-zueoyesj 1262 2 fibroblast fibroblast NN cord-000248-zueoyesj 1262 3 growth growth NN cord-000248-zueoyesj 1262 4 factor factor NN cord-000248-zueoyesj 1262 5 8 8 CD cord-000248-zueoyesj 1262 6 expression expression NN cord-000248-zueoyesj 1262 7 in in IN cord-000248-zueoyesj 1262 8 prostate prostate NN cord-000248-zueoyesj 1262 9 cancer cancer NN cord-000248-zueoyesj 1262 10 cells cell NNS cord-000248-zueoyesj 1263 1 Anticancer anticancer JJ cord-000248-zueoyesj 1263 2 potential potential NN cord-000248-zueoyesj 1263 3 of of IN cord-000248-zueoyesj 1263 4 silymarin silymarin NNP cord-000248-zueoyesj 1264 1 : : : cord-000248-zueoyesj 1264 2 from from IN cord-000248-zueoyesj 1264 3 bench bench NN cord-000248-zueoyesj 1264 4 to to IN cord-000248-zueoyesj 1264 5 bed bed NN cord-000248-zueoyesj 1264 6 side side NN cord-000248-zueoyesj 1264 7 Blockage blockage NN cord-000248-zueoyesj 1264 8 of of IN cord-000248-zueoyesj 1264 9 NF NF NNP cord-000248-zueoyesj 1264 10 - - HYPH cord-000248-zueoyesj 1264 11 kappaB kappaB NNP cord-000248-zueoyesj 1264 12 induces induce VBZ cord-000248-zueoyesj 1264 13 serine serine NN cord-000248-zueoyesj 1264 14 15 15 CD cord-000248-zueoyesj 1264 15 phosphorylation phosphorylation NN cord-000248-zueoyesj 1264 16 of of IN cord-000248-zueoyesj 1264 17 mutant mutant JJ cord-000248-zueoyesj 1264 18 p53 p53 NN cord-000248-zueoyesj 1264 19 by by IN cord-000248-zueoyesj 1264 20 JNK JNK NNP cord-000248-zueoyesj 1264 21 kinase kinase NN cord-000248-zueoyesj 1264 22 in in IN cord-000248-zueoyesj 1264 23 prostate prostate NN cord-000248-zueoyesj 1264 24 cancer cancer NN cord-000248-zueoyesj 1264 25 cells cell NNS cord-000248-zueoyesj 1265 1 Skp2 skp2 NN cord-000248-zueoyesj 1265 2 enhances enhance VBZ cord-000248-zueoyesj 1265 3 polyubiquitination polyubiquitination NN cord-000248-zueoyesj 1265 4 and and CC cord-000248-zueoyesj 1265 5 degradation degradation NN cord-000248-zueoyesj 1265 6 of of IN cord-000248-zueoyesj 1265 7 TIS21 TIS21 NNPS cord-000248-zueoyesj 1265 8 / / SYM cord-000248-zueoyesj 1265 9 BTG2 BTG2 NNP cord-000248-zueoyesj 1265 10 / / SYM cord-000248-zueoyesj 1265 11 PC3 PC3 NNP cord-000248-zueoyesj 1265 12 , , , cord-000248-zueoyesj 1265 13 tumor tumor NN cord-000248-zueoyesj 1265 14 suppressor suppressor NN cord-000248-zueoyesj 1265 15 protein protein NN cord-000248-zueoyesj 1265 16 , , , cord-000248-zueoyesj 1265 17 at at IN cord-000248-zueoyesj 1265 18 the the DT cord-000248-zueoyesj 1265 19 downstream downstream NN cord-000248-zueoyesj 1265 20 of of IN cord-000248-zueoyesj 1265 21 FoxM1 FoxM1 NNP cord-000248-zueoyesj 1265 22 Triiodothyronine Triiodothyronine NNP cord-000248-zueoyesj 1266 1 modulates modulate VBZ cord-000248-zueoyesj 1266 2 cell cell NN cord-000248-zueoyesj 1266 3 proliferation proliferation NN cord-000248-zueoyesj 1266 4 of of IN cord-000248-zueoyesj 1266 5 human human JJ cord-000248-zueoyesj 1266 6 prostatic prostatic JJ cord-000248-zueoyesj 1266 7 carcinoma carcinoma NN cord-000248-zueoyesj 1266 8 cells cell NNS cord-000248-zueoyesj 1266 9 by by IN cord-000248-zueoyesj 1266 10 downregulation downregulation NN cord-000248-zueoyesj 1266 11 of of IN cord-000248-zueoyesj 1266 12 the the DT cord-000248-zueoyesj 1266 13 B b NN cord-000248-zueoyesj 1266 14 - - HYPH cord-000248-zueoyesj 1266 15 cell cell NN cord-000248-zueoyesj 1266 16 translocation translocation NN cord-000248-zueoyesj 1266 17 gene gene NN cord-000248-zueoyesj 1266 18 2 2 CD cord-000248-zueoyesj 1266 19 B b NN cord-000248-zueoyesj 1266 20 cell cell NN cord-000248-zueoyesj 1266 21 translocation translocation NN cord-000248-zueoyesj 1266 22 gene gene NN cord-000248-zueoyesj 1266 23 2 2 CD cord-000248-zueoyesj 1266 24 enhances enhance VBZ cord-000248-zueoyesj 1266 25 susceptibility susceptibility NN cord-000248-zueoyesj 1266 26 of of IN cord-000248-zueoyesj 1266 27 HeLa HeLa NNP cord-000248-zueoyesj 1266 28 cells cell NNS cord-000248-zueoyesj 1266 29 to to IN cord-000248-zueoyesj 1266 30 doxorubicin doxorubicin NN cord-000248-zueoyesj 1266 31 - - HYPH cord-000248-zueoyesj 1266 32 induced induce VBN cord-000248-zueoyesj 1266 33 oxidative oxidative JJ cord-000248-zueoyesj 1266 34 damage damage NN cord-000248-zueoyesj 1266 35 TIS21 TIS21 NNS cord-000248-zueoyesj 1267 1 ( ( -LRB- cord-000248-zueoyesj 1267 2 /BTG2 /BTG2 NNP cord-000248-zueoyesj 1267 3 / / SYM cord-000248-zueoyesj 1267 4 PC3 PC3 NNP cord-000248-zueoyesj 1267 5 ) ) -RRB- cord-000248-zueoyesj 1268 1 as as IN cord-000248-zueoyesj 1268 2 a a DT cord-000248-zueoyesj 1268 3 link link NN cord-000248-zueoyesj 1268 4 between between IN cord-000248-zueoyesj 1268 5 ageing age VBG cord-000248-zueoyesj 1268 6 and and CC cord-000248-zueoyesj 1268 7 cancer cancer NN cord-000248-zueoyesj 1268 8 : : : cord-000248-zueoyesj 1268 9 cell cell NN cord-000248-zueoyesj 1268 10 cycle cycle NN cord-000248-zueoyesj 1268 11 regulator regulator NN cord-000248-zueoyesj 1268 12 and and CC cord-000248-zueoyesj 1268 13 endogenous endogenous JJ cord-000248-zueoyesj 1268 14 cell cell NN cord-000248-zueoyesj 1268 15 death death NN cord-000248-zueoyesj 1268 16 molecule molecule NN cord-000248-zueoyesj 1268 17 Expression expression NN cord-000248-zueoyesj 1268 18 of of IN cord-000248-zueoyesj 1268 19 B b NN cord-000248-zueoyesj 1268 20 - - HYPH cord-000248-zueoyesj 1268 21 cell cell NN cord-000248-zueoyesj 1268 22 translocation translocation NN cord-000248-zueoyesj 1268 23 gene gene NN cord-000248-zueoyesj 1268 24 2 2 CD cord-000248-zueoyesj 1268 25 protein protein NN cord-000248-zueoyesj 1268 26 in in IN cord-000248-zueoyesj 1268 27 normal normal JJ cord-000248-zueoyesj 1268 28 human human JJ cord-000248-zueoyesj 1268 29 tissues tissue NNS cord-000248-zueoyesj 1268 30 Antiproliferative Antiproliferative NNP cord-000248-zueoyesj 1268 31 B B NNP cord-000248-zueoyesj 1268 32 cell cell NN cord-000248-zueoyesj 1268 33 translocation translocation NN cord-000248-zueoyesj 1268 34 gene gene NN cord-000248-zueoyesj 1268 35 2 2 CD cord-000248-zueoyesj 1268 36 protein protein NN cord-000248-zueoyesj 1268 37 is be VBZ cord-000248-zueoyesj 1268 38 down down RB cord-000248-zueoyesj 1268 39 - - HYPH cord-000248-zueoyesj 1268 40 regulated regulate VBN cord-000248-zueoyesj 1268 41 posttranscriptionally posttranscriptionally RB cord-000248-zueoyesj 1268 42 as as IN cord-000248-zueoyesj 1268 43 an an DT cord-000248-zueoyesj 1268 44 early early JJ cord-000248-zueoyesj 1268 45 event event NN cord-000248-zueoyesj 1268 46 in in IN cord-000248-zueoyesj 1268 47 prostate prostate NN cord-000248-zueoyesj 1268 48 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1268 49 Identification identification NN cord-000248-zueoyesj 1268 50 of of IN cord-000248-zueoyesj 1268 51 genes gene NNS cord-000248-zueoyesj 1268 52 associated associate VBN cord-000248-zueoyesj 1268 53 with with IN cord-000248-zueoyesj 1268 54 stromal stromal JJ cord-000248-zueoyesj 1268 55 hyperplasia hyperplasia NN cord-000248-zueoyesj 1268 56 and and CC cord-000248-zueoyesj 1268 57 glandular glandular JJ cord-000248-zueoyesj 1268 58 atrophy atrophy NN cord-000248-zueoyesj 1268 59 of of IN cord-000248-zueoyesj 1268 60 the the DT cord-000248-zueoyesj 1268 61 prostate prostate NN cord-000248-zueoyesj 1268 62 by by IN cord-000248-zueoyesj 1268 63 mRNA mRNA NNP cord-000248-zueoyesj 1268 64 differential differential JJ cord-000248-zueoyesj 1268 65 display display NN cord-000248-zueoyesj 1268 66 Role role NN cord-000248-zueoyesj 1268 67 of of IN cord-000248-zueoyesj 1268 68 connective connective JJ cord-000248-zueoyesj 1268 69 tissue tissue NN cord-000248-zueoyesj 1268 70 growth growth NN cord-000248-zueoyesj 1268 71 factor factor NN cord-000248-zueoyesj 1268 72 in in IN cord-000248-zueoyesj 1268 73 fibronectin fibronectin NN cord-000248-zueoyesj 1268 74 synthesis synthesis NN cord-000248-zueoyesj 1268 75 in in IN cord-000248-zueoyesj 1268 76 cultured cultured JJ cord-000248-zueoyesj 1268 77 human human JJ cord-000248-zueoyesj 1268 78 prostate prostate NN cord-000248-zueoyesj 1268 79 stromal stromal NN cord-000248-zueoyesj 1268 80 cells cell NNS cord-000248-zueoyesj 1269 1 Stromal stromal JJ cord-000248-zueoyesj 1269 2 expression expression NN cord-000248-zueoyesj 1269 3 of of IN cord-000248-zueoyesj 1269 4 connective connective JJ cord-000248-zueoyesj 1269 5 tissue tissue NN cord-000248-zueoyesj 1269 6 growth growth NN cord-000248-zueoyesj 1269 7 factor factor NN cord-000248-zueoyesj 1269 8 promotes promote VBZ cord-000248-zueoyesj 1269 9 angiogenesis angiogenesis NN cord-000248-zueoyesj 1269 10 and and CC cord-000248-zueoyesj 1269 11 prostate prostate NN cord-000248-zueoyesj 1269 12 cancer cancer NN cord-000248-zueoyesj 1269 13 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1269 14 Analysis Analysis NNP cord-000248-zueoyesj 1269 15 of of IN cord-000248-zueoyesj 1269 16 gene gene NN cord-000248-zueoyesj 1269 17 expression expression NN cord-000248-zueoyesj 1269 18 during during IN cord-000248-zueoyesj 1269 19 staurosporine staurosporine NN cord-000248-zueoyesj 1269 20 - - HYPH cord-000248-zueoyesj 1269 21 induced induce VBN cord-000248-zueoyesj 1269 22 neuronal neuronal JJ cord-000248-zueoyesj 1269 23 differentiation differentiation NN cord-000248-zueoyesj 1269 24 of of IN cord-000248-zueoyesj 1269 25 human human JJ cord-000248-zueoyesj 1269 26 prostate prostate NN cord-000248-zueoyesj 1269 27 cancer cancer NN cord-000248-zueoyesj 1269 28 cells cell NNS cord-000248-zueoyesj 1269 29 Profiling profile VBG cord-000248-zueoyesj 1269 30 molecular molecular JJ cord-000248-zueoyesj 1269 31 targets target NNS cord-000248-zueoyesj 1269 32 of of IN cord-000248-zueoyesj 1269 33 TGF TGF NNP cord-000248-zueoyesj 1269 34 - - HYPH cord-000248-zueoyesj 1269 35 beta1 beta1 NN cord-000248-zueoyesj 1269 36 in in IN cord-000248-zueoyesj 1269 37 prostate prostate NN cord-000248-zueoyesj 1269 38 fibroblast fibroblast NN cord-000248-zueoyesj 1269 39 - - HYPH cord-000248-zueoyesj 1269 40 to to IN cord-000248-zueoyesj 1269 41 - - HYPH cord-000248-zueoyesj 1269 42 myofibroblast myofibroblast NN cord-000248-zueoyesj 1269 43 transdifferentiation transdifferentiation NN cord-000248-zueoyesj 1269 44 Expression expression NN cord-000248-zueoyesj 1269 45 of of IN cord-000248-zueoyesj 1269 46 androgen androgen NN cord-000248-zueoyesj 1269 47 receptor receptor NN cord-000248-zueoyesj 1269 48 coregulatory coregulatory NNP cord-000248-zueoyesj 1269 49 proteins protein NNS cord-000248-zueoyesj 1269 50 in in IN cord-000248-zueoyesj 1269 51 prostate prostate NN cord-000248-zueoyesj 1269 52 cancer cancer NN cord-000248-zueoyesj 1269 53 and and CC cord-000248-zueoyesj 1269 54 stromal stromal NN cord-000248-zueoyesj 1269 55 - - HYPH cord-000248-zueoyesj 1269 56 cell cell NN cord-000248-zueoyesj 1269 57 culture culture NN cord-000248-zueoyesj 1269 58 models model NNS cord-000248-zueoyesj 1270 1 FHL2 FHL2 NNP cord-000248-zueoyesj 1270 2 , , , cord-000248-zueoyesj 1270 3 a a DT cord-000248-zueoyesj 1270 4 novel novel JJ cord-000248-zueoyesj 1270 5 tissue tissue NN cord-000248-zueoyesj 1270 6 - - HYPH cord-000248-zueoyesj 1270 7 specific specific JJ cord-000248-zueoyesj 1270 8 coactivator coactivator NN cord-000248-zueoyesj 1270 9 of of IN cord-000248-zueoyesj 1270 10 the the DT cord-000248-zueoyesj 1270 11 androgen androgen NN cord-000248-zueoyesj 1270 12 receptor receptor NN cord-000248-zueoyesj 1270 13 Four Four NNP cord-000248-zueoyesj 1270 14 and and CC cord-000248-zueoyesj 1270 15 a a DT cord-000248-zueoyesj 1270 16 Half Half NNP cord-000248-zueoyesj 1270 17 LIM LIM NNP cord-000248-zueoyesj 1270 18 Domain Domain NNP cord-000248-zueoyesj 1270 19 2 2 CD cord-000248-zueoyesj 1270 20 alters alter VBZ cord-000248-zueoyesj 1270 21 the the DT cord-000248-zueoyesj 1270 22 impact impact NN cord-000248-zueoyesj 1270 23 of of IN cord-000248-zueoyesj 1270 24 Aryl Aryl NNP cord-000248-zueoyesj 1270 25 Hydrocarbon Hydrocarbon NNP cord-000248-zueoyesj 1270 26 Receptor Receptor NNP cord-000248-zueoyesj 1270 27 on on IN cord-000248-zueoyesj 1270 28 Androgen Androgen NNP cord-000248-zueoyesj 1270 29 Receptor Receptor NNP cord-000248-zueoyesj 1270 30 transcriptional transcriptional JJ cord-000248-zueoyesj 1270 31 activity activity NN cord-000248-zueoyesj 1270 32 Differently differently RB cord-000248-zueoyesj 1270 33 regulated regulate VBN cord-000248-zueoyesj 1270 34 androgen androgen NN cord-000248-zueoyesj 1270 35 receptor receptor NN cord-000248-zueoyesj 1270 36 transcriptional transcriptional NN cord-000248-zueoyesj 1270 37 complex complex NN cord-000248-zueoyesj 1270 38 in in IN cord-000248-zueoyesj 1270 39 prostate prostate NN cord-000248-zueoyesj 1270 40 cancer cancer NN cord-000248-zueoyesj 1270 41 compared compare VBN cord-000248-zueoyesj 1270 42 with with IN cord-000248-zueoyesj 1270 43 normal normal JJ cord-000248-zueoyesj 1270 44 prostate prostate NN cord-000248-zueoyesj 1270 45 Suppression suppression NN cord-000248-zueoyesj 1270 46 of of IN cord-000248-zueoyesj 1270 47 FOXO1 FOXO1 NNP cord-000248-zueoyesj 1270 48 activity activity NN cord-000248-zueoyesj 1270 49 by by IN cord-000248-zueoyesj 1270 50 FHL2 FHL2 NNP cord-000248-zueoyesj 1270 51 through through IN cord-000248-zueoyesj 1270 52 SIRT1-mediated SIRT1-mediated NNP cord-000248-zueoyesj 1270 53 deacetylation deacetylation NN cord-000248-zueoyesj 1271 1 The the DT cord-000248-zueoyesj 1271 2 transcriptional transcriptional JJ cord-000248-zueoyesj 1271 3 coactivator coactivator NN cord-000248-zueoyesj 1271 4 FHL2 FHL2 NNP cord-000248-zueoyesj 1271 5 transmits transmit VBZ cord-000248-zueoyesj 1271 6 Rho rho NN cord-000248-zueoyesj 1271 7 signals signal NNS cord-000248-zueoyesj 1271 8 from from IN cord-000248-zueoyesj 1271 9 the the DT cord-000248-zueoyesj 1271 10 cell cell NN cord-000248-zueoyesj 1271 11 membrane membrane NN cord-000248-zueoyesj 1271 12 into into IN cord-000248-zueoyesj 1271 13 the the DT cord-000248-zueoyesj 1271 14 nucleus nucleus NN cord-000248-zueoyesj 1272 1 Functional functional JJ cord-000248-zueoyesj 1272 2 epigenomics epigenomic NNS cord-000248-zueoyesj 1272 3 identifies identify VBZ cord-000248-zueoyesj 1272 4 genes gene NNS cord-000248-zueoyesj 1272 5 frequently frequently RB cord-000248-zueoyesj 1272 6 silenced silence VBN cord-000248-zueoyesj 1272 7 in in IN cord-000248-zueoyesj 1272 8 prostate prostate NN cord-000248-zueoyesj 1272 9 cancer cancer NN cord-000248-zueoyesj 1272 10 Expression expression NN cord-000248-zueoyesj 1272 11 level level NN cord-000248-zueoyesj 1272 12 and and CC cord-000248-zueoyesj 1272 13 DNA dna NN cord-000248-zueoyesj 1272 14 methylation methylation NN cord-000248-zueoyesj 1272 15 status status NN cord-000248-zueoyesj 1272 16 of of IN cord-000248-zueoyesj 1272 17 glutathione glutathione NN cord-000248-zueoyesj 1272 18 - - HYPH cord-000248-zueoyesj 1272 19 S s NN cord-000248-zueoyesj 1272 20 - - HYPH cord-000248-zueoyesj 1272 21 transferase transferase NN cord-000248-zueoyesj 1272 22 genes gene NNS cord-000248-zueoyesj 1272 23 in in IN cord-000248-zueoyesj 1272 24 normal normal JJ cord-000248-zueoyesj 1272 25 murine murine JJ cord-000248-zueoyesj 1272 26 prostate prostate NN cord-000248-zueoyesj 1272 27 and and CC cord-000248-zueoyesj 1272 28 TRAMP tramp NN cord-000248-zueoyesj 1272 29 tumors tumor NNS cord-000248-zueoyesj 1272 30 Function function NN cord-000248-zueoyesj 1272 31 of of IN cord-000248-zueoyesj 1272 32 JunB JunB NNP cord-000248-zueoyesj 1272 33 in in IN cord-000248-zueoyesj 1272 34 transient transient JJ cord-000248-zueoyesj 1272 35 amplifying amplify VBG cord-000248-zueoyesj 1272 36 cell cell NN cord-000248-zueoyesj 1272 37 senescence senescence NN cord-000248-zueoyesj 1272 38 and and CC cord-000248-zueoyesj 1272 39 progression progression NN cord-000248-zueoyesj 1272 40 of of IN cord-000248-zueoyesj 1272 41 human human JJ cord-000248-zueoyesj 1272 42 prostate prostate NN cord-000248-zueoyesj 1272 43 cancer cancer NN cord-000248-zueoyesj 1272 44 KAI1 KAI1 NNP cord-000248-zueoyesj 1272 45 promoter promoter NN cord-000248-zueoyesj 1272 46 activity activity NN cord-000248-zueoyesj 1272 47 is be VBZ cord-000248-zueoyesj 1272 48 dependent dependent JJ cord-000248-zueoyesj 1272 49 on on IN cord-000248-zueoyesj 1272 50 p53 p53 NN cord-000248-zueoyesj 1272 51 , , , cord-000248-zueoyesj 1272 52 junB junB NNP cord-000248-zueoyesj 1272 53 and and CC cord-000248-zueoyesj 1272 54 AP2 AP2 NNP cord-000248-zueoyesj 1272 55 : : : cord-000248-zueoyesj 1272 56 evidence evidence NN cord-000248-zueoyesj 1272 57 for for IN cord-000248-zueoyesj 1272 58 a a DT cord-000248-zueoyesj 1272 59 possible possible JJ cord-000248-zueoyesj 1272 60 mechanism mechanism NN cord-000248-zueoyesj 1272 61 underlying underlying JJ cord-000248-zueoyesj 1272 62 loss loss NN cord-000248-zueoyesj 1272 63 of of IN cord-000248-zueoyesj 1272 64 KAI1 KAI1 NNP cord-000248-zueoyesj 1272 65 expression expression NN cord-000248-zueoyesj 1272 66 in in IN cord-000248-zueoyesj 1272 67 cancer cancer NN cord-000248-zueoyesj 1272 68 cells cell NNS cord-000248-zueoyesj 1272 69 Inhibition inhibition NN cord-000248-zueoyesj 1272 70 of of IN cord-000248-zueoyesj 1272 71 prostate prostate NN cord-000248-zueoyesj 1272 72 tumor tumor NN cord-000248-zueoyesj 1272 73 growth growth NN cord-000248-zueoyesj 1272 74 by by IN cord-000248-zueoyesj 1272 75 overexpression overexpression NN cord-000248-zueoyesj 1272 76 of of IN cord-000248-zueoyesj 1272 77 NudC NudC NNP cord-000248-zueoyesj 1272 78 , , , cord-000248-zueoyesj 1272 79 a a DT cord-000248-zueoyesj 1272 80 microtubule microtubule NN cord-000248-zueoyesj 1272 81 motorassociated motorassociate VBN cord-000248-zueoyesj 1272 82 protein protein NN cord-000248-zueoyesj 1272 83 Control Control NNP cord-000248-zueoyesj 1272 84 of of IN cord-000248-zueoyesj 1272 85 androgen androgen NN cord-000248-zueoyesj 1272 86 receptor receptor NN cord-000248-zueoyesj 1272 87 signaling signal VBG cord-000248-zueoyesj 1272 88 in in IN cord-000248-zueoyesj 1272 89 prostate prostate NN cord-000248-zueoyesj 1272 90 cancer cancer NN cord-000248-zueoyesj 1272 91 by by IN cord-000248-zueoyesj 1272 92 the the DT cord-000248-zueoyesj 1272 93 cochaperone cochaperone NNP cord-000248-zueoyesj 1272 94 small small JJ cord-000248-zueoyesj 1272 95 glutamine glutamine NN cord-000248-zueoyesj 1272 96 rich rich JJ cord-000248-zueoyesj 1272 97 tetratricopeptide tetratricopeptide NN cord-000248-zueoyesj 1272 98 repeat repeat NN cord-000248-zueoyesj 1272 99 containing contain VBG cord-000248-zueoyesj 1272 100 protein protein NN cord-000248-zueoyesj 1272 101 alpha alpha NN cord-000248-zueoyesj 1272 102 Signal Signal NNP cord-000248-zueoyesj 1272 103 transducer transducer NN cord-000248-zueoyesj 1272 104 and and CC cord-000248-zueoyesj 1272 105 activator activator NN cord-000248-zueoyesj 1272 106 of of IN cord-000248-zueoyesj 1272 107 transcription-6 transcription-6 NNP cord-000248-zueoyesj 1272 108 ( ( -LRB- cord-000248-zueoyesj 1272 109 STAT6 STAT6 NNP cord-000248-zueoyesj 1272 110 ) ) -RRB- cord-000248-zueoyesj 1272 111 is be VBZ cord-000248-zueoyesj 1272 112 a a DT cord-000248-zueoyesj 1272 113 constitutively constitutively RB cord-000248-zueoyesj 1272 114 expressed express VBN cord-000248-zueoyesj 1272 115 survival survival NN cord-000248-zueoyesj 1272 116 factor factor NN cord-000248-zueoyesj 1272 117 in in IN cord-000248-zueoyesj 1272 118 human human JJ cord-000248-zueoyesj 1272 119 prostate prostate NN cord-000248-zueoyesj 1272 120 cancer cancer NN cord-000248-zueoyesj 1272 121 Robust Robust NNP cord-000248-zueoyesj 1272 122 prostate prostate NN cord-000248-zueoyesj 1272 123 cancer cancer NN cord-000248-zueoyesj 1272 124 marker marker NN cord-000248-zueoyesj 1272 125 genes gene NNS cord-000248-zueoyesj 1272 126 emerge emerge VBP cord-000248-zueoyesj 1272 127 from from IN cord-000248-zueoyesj 1272 128 direct direct JJ cord-000248-zueoyesj 1272 129 integration integration NN cord-000248-zueoyesj 1272 130 of of IN cord-000248-zueoyesj 1272 131 inter inter JJ cord-000248-zueoyesj 1272 132 - - JJ cord-000248-zueoyesj 1272 133 study study JJ cord-000248-zueoyesj 1272 134 microarray microarray NN cord-000248-zueoyesj 1272 135 data datum NNS cord-000248-zueoyesj 1272 136 Molecular Molecular NNP cord-000248-zueoyesj 1272 137 features feature NNS cord-000248-zueoyesj 1272 138 of of IN cord-000248-zueoyesj 1272 139 the the DT cord-000248-zueoyesj 1272 140 transition transition NN cord-000248-zueoyesj 1272 141 from from IN cord-000248-zueoyesj 1272 142 prostatic prostatic JJ cord-000248-zueoyesj 1272 143 intraepithelial intraepithelial JJ cord-000248-zueoyesj 1272 144 neoplasia neoplasia NN cord-000248-zueoyesj 1272 145 ( ( -LRB- cord-000248-zueoyesj 1272 146 PIN pin NN cord-000248-zueoyesj 1272 147 ) ) -RRB- cord-000248-zueoyesj 1272 148 to to IN cord-000248-zueoyesj 1272 149 prostate prostate NN cord-000248-zueoyesj 1272 150 cancer cancer NN cord-000248-zueoyesj 1272 151 : : : cord-000248-zueoyesj 1272 152 genome genome NN cord-000248-zueoyesj 1272 153 - - HYPH cord-000248-zueoyesj 1272 154 wide wide JJ cord-000248-zueoyesj 1272 155 gene gene NN cord-000248-zueoyesj 1272 156 - - HYPH cord-000248-zueoyesj 1272 157 expression expression NN cord-000248-zueoyesj 1272 158 profiles profile NNS cord-000248-zueoyesj 1272 159 of of IN cord-000248-zueoyesj 1272 160 prostate prostate NN cord-000248-zueoyesj 1272 161 cancers cancer NNS cord-000248-zueoyesj 1272 162 and and CC cord-000248-zueoyesj 1272 163 PINs pin NNS cord-000248-zueoyesj 1272 164 Analysis Analysis NNP cord-000248-zueoyesj 1272 165 of of IN cord-000248-zueoyesj 1272 166 integrin integrin NN cord-000248-zueoyesj 1273 1 alpha7 alpha7 NN cord-000248-zueoyesj 1273 2 mutations mutation NNS cord-000248-zueoyesj 1273 3 in in IN cord-000248-zueoyesj 1273 4 prostate prostate NN cord-000248-zueoyesj 1273 5 cancer cancer NN cord-000248-zueoyesj 1273 6 , , , cord-000248-zueoyesj 1273 7 liver liver NN cord-000248-zueoyesj 1273 8 cancer cancer NN cord-000248-zueoyesj 1273 9 , , , cord-000248-zueoyesj 1273 10 glioblastoma glioblastoma NN cord-000248-zueoyesj 1273 11 multiforme multiforme NN cord-000248-zueoyesj 1273 12 , , , cord-000248-zueoyesj 1273 13 and and CC cord-000248-zueoyesj 1273 14 leiomyosarcoma leiomyosarcoma NNP cord-000248-zueoyesj 1274 1 The the DT cord-000248-zueoyesj 1274 2 biology biology NN cord-000248-zueoyesj 1274 3 of of IN cord-000248-zueoyesj 1274 4 cancer cancer NN cord-000248-zueoyesj 1275 1 The the DT cord-000248-zueoyesj 1275 2 chromosomal chromosomal JJ cord-000248-zueoyesj 1275 3 basis basis NN cord-000248-zueoyesj 1275 4 of of IN cord-000248-zueoyesj 1275 5 cancer cancer NN cord-000248-zueoyesj 1275 6 Gene Gene NNP cord-000248-zueoyesj 1275 7 panel panel NN cord-000248-zueoyesj 1275 8 model model NN cord-000248-zueoyesj 1275 9 predictive predictive NN cord-000248-zueoyesj 1275 10 of of IN cord-000248-zueoyesj 1275 11 outcome outcome NN cord-000248-zueoyesj 1275 12 in in IN cord-000248-zueoyesj 1275 13 men man NNS cord-000248-zueoyesj 1275 14 at at IN cord-000248-zueoyesj 1275 15 high high JJ cord-000248-zueoyesj 1275 16 - - HYPH cord-000248-zueoyesj 1275 17 risk risk NN cord-000248-zueoyesj 1275 18 of of IN cord-000248-zueoyesj 1275 19 systemic systemic JJ cord-000248-zueoyesj 1275 20 progression progression NN cord-000248-zueoyesj 1275 21 and and CC cord-000248-zueoyesj 1275 22 death death NN cord-000248-zueoyesj 1275 23 from from IN cord-000248-zueoyesj 1275 24 prostate prostate NN cord-000248-zueoyesj 1275 25 cancer cancer NN cord-000248-zueoyesj 1275 26 after after IN cord-000248-zueoyesj 1275 27 radical radical JJ cord-000248-zueoyesj 1275 28 retropubic retropubic JJ cord-000248-zueoyesj 1275 29 prostatectomy prostatectomy NN cord-000248-zueoyesj 1275 30 Aneuploidy Aneuploidy NNP cord-000248-zueoyesj 1275 31 and and CC cord-000248-zueoyesj 1275 32 rapid rapid JJ cord-000248-zueoyesj 1275 33 cell cell NN cord-000248-zueoyesj 1275 34 proliferation proliferation NN cord-000248-zueoyesj 1275 35 in in IN cord-000248-zueoyesj 1275 36 recurrent recurrent JJ cord-000248-zueoyesj 1275 37 prostate prostate NN cord-000248-zueoyesj 1275 38 cancers cancer NNS cord-000248-zueoyesj 1275 39 with with IN cord-000248-zueoyesj 1275 40 androgen androgen NN cord-000248-zueoyesj 1275 41 receptor receptor NN cord-000248-zueoyesj 1275 42 gene gene NN cord-000248-zueoyesj 1275 43 amplification amplification NN cord-000248-zueoyesj 1275 44 Prognostic prognostic JJ cord-000248-zueoyesj 1275 45 value value NN cord-000248-zueoyesj 1275 46 of of IN cord-000248-zueoyesj 1275 47 DNA dna NN cord-000248-zueoyesj 1275 48 analysis analysis NN cord-000248-zueoyesj 1275 49 of of IN cord-000248-zueoyesj 1275 50 prostate prostate NN cord-000248-zueoyesj 1275 51 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1275 52 : : : cord-000248-zueoyesj 1275 53 correlation correlation NN cord-000248-zueoyesj 1275 54 to to IN cord-000248-zueoyesj 1275 55 clinicopathologic clinicopathologic JJ cord-000248-zueoyesj 1275 56 predictors predictor NNS cord-000248-zueoyesj 1275 57 Heterogeneity Heterogeneity NNP cord-000248-zueoyesj 1275 58 in in IN cord-000248-zueoyesj 1275 59 prostate prostate NN cord-000248-zueoyesj 1275 60 cancer cancer NN cord-000248-zueoyesj 1275 61 : : : cord-000248-zueoyesj 1275 62 prostate prostate NN cord-000248-zueoyesj 1275 63 specific specific JJ cord-000248-zueoyesj 1275 64 antigen antigen NN cord-000248-zueoyesj 1275 65 ( ( -LRB- cord-000248-zueoyesj 1275 66 PSA PSA NNP cord-000248-zueoyesj 1275 67 ) ) -RRB- cord-000248-zueoyesj 1275 68 and and CC cord-000248-zueoyesj 1275 69 DNA DNA NNP cord-000248-zueoyesj 1275 70 cytophotometry cytophotometry NN cord-000248-zueoyesj 1275 71 Identification identification NN cord-000248-zueoyesj 1275 72 of of IN cord-000248-zueoyesj 1275 73 patients patient NNS cord-000248-zueoyesj 1275 74 with with IN cord-000248-zueoyesj 1275 75 low low JJ cord-000248-zueoyesj 1275 76 - - HYPH cord-000248-zueoyesj 1275 77 risk risk NN cord-000248-zueoyesj 1275 78 for for IN cord-000248-zueoyesj 1275 79 aneuploidy aneuploidy NN cord-000248-zueoyesj 1275 80 : : : cord-000248-zueoyesj 1275 81 comparative comparative JJ cord-000248-zueoyesj 1275 82 discriminatory discriminatory JJ cord-000248-zueoyesj 1275 83 models model NNS cord-000248-zueoyesj 1275 84 using use VBG cord-000248-zueoyesj 1275 85 linear linear JJ cord-000248-zueoyesj 1275 86 and and CC cord-000248-zueoyesj 1275 87 machinelearning machinelearne VBG cord-000248-zueoyesj 1275 88 classifiers classifier NNS cord-000248-zueoyesj 1275 89 in in IN cord-000248-zueoyesj 1275 90 prostate prostate NN cord-000248-zueoyesj 1275 91 cancer cancer NN cord-000248-zueoyesj 1275 92 Prognostic prognostic JJ cord-000248-zueoyesj 1275 93 factors factor NNS cord-000248-zueoyesj 1275 94 in in IN cord-000248-zueoyesj 1275 95 prostate prostate NN cord-000248-zueoyesj 1275 96 cancer cancer NN cord-000248-zueoyesj 1275 97 Stage stage NN cord-000248-zueoyesj 1275 98 B B NNP cord-000248-zueoyesj 1275 99 Prostate Prostate NNP cord-000248-zueoyesj 1275 100 Cancer cancer NN cord-000248-zueoyesj 1275 101 : : : cord-000248-zueoyesj 1275 102 Correlation correlation NN cord-000248-zueoyesj 1275 103 of of IN cord-000248-zueoyesj 1275 104 DNA DNA NNP cord-000248-zueoyesj 1275 105 Ploidy Ploidy NNP cord-000248-zueoyesj 1275 106 Analysis Analysis NNP cord-000248-zueoyesj 1275 107 With with IN cord-000248-zueoyesj 1275 108 Histological Histological NNP cord-000248-zueoyesj 1275 109 and and CC cord-000248-zueoyesj 1275 110 Clinical Clinical NNP cord-000248-zueoyesj 1275 111 Parameters Parameters NNP cord-000248-zueoyesj 1275 112 ETS ETS NNP cord-000248-zueoyesj 1275 113 gene gene NN cord-000248-zueoyesj 1275 114 fusions fusion NNS cord-000248-zueoyesj 1275 115 in in IN cord-000248-zueoyesj 1275 116 prostate prostate NN cord-000248-zueoyesj 1275 117 cancer cancer NN cord-000248-zueoyesj 1275 118 Unusually unusually RB cord-000248-zueoyesj 1275 119 stable stable JJ cord-000248-zueoyesj 1275 120 abnormal abnormal JJ cord-000248-zueoyesj 1275 121 karyotype karyotype NN cord-000248-zueoyesj 1275 122 in in IN cord-000248-zueoyesj 1275 123 a a DT cord-000248-zueoyesj 1275 124 highly highly RB cord-000248-zueoyesj 1275 125 aggressive aggressive JJ cord-000248-zueoyesj 1275 126 melanoma melanoma NN cord-000248-zueoyesj 1275 127 negative negative JJ cord-000248-zueoyesj 1275 128 for for IN cord-000248-zueoyesj 1275 129 telomerase telomerase NN cord-000248-zueoyesj 1275 130 activity activity NN cord-000248-zueoyesj 1275 131 Repetitive repetitive JJ cord-000248-zueoyesj 1275 132 DNA dna NN cord-000248-zueoyesj 1275 133 alterations alteration NNS cord-000248-zueoyesj 1275 134 in in IN cord-000248-zueoyesj 1275 135 human human JJ cord-000248-zueoyesj 1275 136 skin skin NN cord-000248-zueoyesj 1275 137 cancers cancer NNS cord-000248-zueoyesj 1276 1 Emerging emerge VBG cord-000248-zueoyesj 1276 2 insights insight NNS cord-000248-zueoyesj 1276 3 into into IN cord-000248-zueoyesj 1276 4 the the DT cord-000248-zueoyesj 1276 5 molecular molecular JJ cord-000248-zueoyesj 1276 6 pathogenesis pathogenesis NN cord-000248-zueoyesj 1276 7 of of IN cord-000248-zueoyesj 1276 8 uveal uveal JJ cord-000248-zueoyesj 1276 9 melanoma melanoma NN cord-000248-zueoyesj 1276 10 Integrative Integrative NNP cord-000248-zueoyesj 1276 11 genomic genomic JJ cord-000248-zueoyesj 1276 12 analysis analysis NN cord-000248-zueoyesj 1276 13 of of IN cord-000248-zueoyesj 1276 14 aneuploidy aneuploidy NN cord-000248-zueoyesj 1276 15 in in IN cord-000248-zueoyesj 1276 16 uveal uveal JJ cord-000248-zueoyesj 1276 17 melanoma melanoma NN cord-000248-zueoyesj 1276 18 Decreased decrease VBD cord-000248-zueoyesj 1276 19 DNA dna NN cord-000248-zueoyesj 1276 20 ploidy ploidy NN cord-000248-zueoyesj 1276 21 may may MD cord-000248-zueoyesj 1276 22 constitute constitute VB cord-000248-zueoyesj 1276 23 a a DT cord-000248-zueoyesj 1276 24 mechanism mechanism NN cord-000248-zueoyesj 1276 25 of of IN cord-000248-zueoyesj 1276 26 the the DT cord-000248-zueoyesj 1276 27 reduced reduce VBN cord-000248-zueoyesj 1276 28 malignant malignant JJ cord-000248-zueoyesj 1276 29 behavior behavior NN cord-000248-zueoyesj 1276 30 of of IN cord-000248-zueoyesj 1276 31 B16 B16 NNP cord-000248-zueoyesj 1276 32 melanoma melanoma NN cord-000248-zueoyesj 1276 33 in in IN cord-000248-zueoyesj 1276 34 aged aged JJ cord-000248-zueoyesj 1276 35 mice mouse NNS cord-000248-zueoyesj 1276 36 High high JJ cord-000248-zueoyesj 1276 37 frequency frequency NN cord-000248-zueoyesj 1276 38 of of IN cord-000248-zueoyesj 1276 39 tetraploidy tetraploidy NN cord-000248-zueoyesj 1276 40 detected detect VBN cord-000248-zueoyesj 1276 41 in in IN cord-000248-zueoyesj 1276 42 malignant malignant JJ cord-000248-zueoyesj 1276 43 melanoma melanoma NN cord-000248-zueoyesj 1276 44 of of IN cord-000248-zueoyesj 1276 45 Japanese japanese JJ cord-000248-zueoyesj 1276 46 patients patient NNS cord-000248-zueoyesj 1276 47 by by IN cord-000248-zueoyesj 1276 48 fluorescence fluorescence NN cord-000248-zueoyesj 1276 49 in in IN cord-000248-zueoyesj 1276 50 situ situ NN cord-000248-zueoyesj 1276 51 hybridization hybridization NN cord-000248-zueoyesj 1276 52 Analysis Analysis NNP cord-000248-zueoyesj 1276 53 of of IN cord-000248-zueoyesj 1276 54 the the DT cord-000248-zueoyesj 1276 55 DNA dna NN cord-000248-zueoyesj 1276 56 content content NN cord-000248-zueoyesj 1276 57 in in IN cord-000248-zueoyesj 1276 58 the the DT cord-000248-zueoyesj 1276 59 progression progression NN cord-000248-zueoyesj 1276 60 of of IN cord-000248-zueoyesj 1276 61 recurrent recurrent JJ cord-000248-zueoyesj 1276 62 and and CC cord-000248-zueoyesj 1276 63 metastatic metastatic JJ cord-000248-zueoyesj 1276 64 melanomas melanoma NNS cord-000248-zueoyesj 1276 65 Evaluation Evaluation NNP cord-000248-zueoyesj 1276 66 of of IN cord-000248-zueoyesj 1276 67 DNA dna NN cord-000248-zueoyesj 1276 68 ploidy ploidy NN cord-000248-zueoyesj 1276 69 and and CC cord-000248-zueoyesj 1276 70 degree degree NN cord-000248-zueoyesj 1276 71 of of IN cord-000248-zueoyesj 1276 72 DNA dna NN cord-000248-zueoyesj 1276 73 abnormality abnormality NN cord-000248-zueoyesj 1276 74 in in IN cord-000248-zueoyesj 1276 75 benign benign JJ cord-000248-zueoyesj 1276 76 and and CC cord-000248-zueoyesj 1276 77 malignant malignant JJ cord-000248-zueoyesj 1276 78 melanocytic melanocytic JJ cord-000248-zueoyesj 1276 79 lesions lesion NNS cord-000248-zueoyesj 1276 80 of of IN cord-000248-zueoyesj 1276 81 the the DT cord-000248-zueoyesj 1276 82 skin skin NN cord-000248-zueoyesj 1276 83 using use VBG cord-000248-zueoyesj 1276 84 video video NN cord-000248-zueoyesj 1276 85 imaging imaging NNP cord-000248-zueoyesj 1276 86 Association Association NNP cord-000248-zueoyesj 1276 87 of of IN cord-000248-zueoyesj 1276 88 genomic genomic JJ cord-000248-zueoyesj 1276 89 imbalances imbalance NNS cord-000248-zueoyesj 1276 90 with with IN cord-000248-zueoyesj 1276 91 resistance resistance NN cord-000248-zueoyesj 1276 92 to to IN cord-000248-zueoyesj 1276 93 therapeutic therapeutic JJ cord-000248-zueoyesj 1276 94 drugs drug NNS cord-000248-zueoyesj 1276 95 in in IN cord-000248-zueoyesj 1276 96 human human JJ cord-000248-zueoyesj 1276 97 melanoma melanoma NN cord-000248-zueoyesj 1276 98 cell cell NN cord-000248-zueoyesj 1276 99 lines line NNS cord-000248-zueoyesj 1276 100 Highgrade highgrade JJ cord-000248-zueoyesj 1276 101 prostate prostate NN cord-000248-zueoyesj 1276 102 intraepithelial intraepithelial JJ cord-000248-zueoyesj 1276 103 neoplasia neoplasia NN cord-000248-zueoyesj 1276 104 shares share NNS cord-000248-zueoyesj 1276 105 cytogenetic cytogenetic JJ cord-000248-zueoyesj 1276 106 alterations alteration NNS cord-000248-zueoyesj 1276 107 with with IN cord-000248-zueoyesj 1276 108 invasive invasive JJ cord-000248-zueoyesj 1276 109 prostate prostate NN cord-000248-zueoyesj 1276 110 cancer cancer NN cord-000248-zueoyesj 1276 111 Persistent persistent JJ cord-000248-zueoyesj 1276 112 exposure exposure NN cord-000248-zueoyesj 1276 113 to to IN cord-000248-zueoyesj 1276 114 Mycoplasma Mycoplasma NNP cord-000248-zueoyesj 1276 115 induces induce VBZ cord-000248-zueoyesj 1276 116 malignant malignant JJ cord-000248-zueoyesj 1276 117 transformation transformation NN cord-000248-zueoyesj 1276 118 of of IN cord-000248-zueoyesj 1276 119 human human JJ cord-000248-zueoyesj 1276 120 prostate prostate NN cord-000248-zueoyesj 1276 121 cells cell NNS cord-000248-zueoyesj 1276 122 Profiling profile VBG cord-000248-zueoyesj 1276 123 cytogenetic cytogenetic JJ cord-000248-zueoyesj 1276 124 diversity diversity NN cord-000248-zueoyesj 1276 125 with with IN cord-000248-zueoyesj 1276 126 entropy entropy NN cord-000248-zueoyesj 1276 127 - - HYPH cord-000248-zueoyesj 1276 128 based base VBN cord-000248-zueoyesj 1276 129 karyotypic karyotypic NNP cord-000248-zueoyesj 1276 130 analysis analysis NNP cord-000248-zueoyesj 1277 1 A a DT cord-000248-zueoyesj 1277 2 Farewell Farewell NNP cord-000248-zueoyesj 1277 3 to to IN cord-000248-zueoyesj 1277 4 Entropy Entropy NNP cord-000248-zueoyesj 1277 5 : : : cord-000248-zueoyesj 1277 6 Statistical Statistical NNP cord-000248-zueoyesj 1277 7 Thermodynamics thermodynamic NNS cord-000248-zueoyesj 1277 8 based base VBN cord-000248-zueoyesj 1277 9 on on IN cord-000248-zueoyesj 1277 10 Information Information NNP cord-000248-zueoyesj 1277 11 World World NNP cord-000248-zueoyesj 1278 1 Can Can MD cord-000248-zueoyesj 1278 2 Entropy entropy VB cord-000248-zueoyesj 1278 3 and and CC cord-000248-zueoyesj 1278 4 ' ' '' cord-000248-zueoyesj 1278 5 ' ' `` cord-000248-zueoyesj 1278 6 order order NN cord-000248-zueoyesj 1278 7 ' ' '' cord-000248-zueoyesj 1278 8 ' ' '' cord-000248-zueoyesj 1278 9 increase increase NN cord-000248-zueoyesj 1278 10 together together RB cord-000248-zueoyesj 1278 11 ? ? . cord-000248-zueoyesj 1279 1 Entropy entropy NN cord-000248-zueoyesj 1279 2 measures measure NNS cord-000248-zueoyesj 1279 3 quantify quantify VBP cord-000248-zueoyesj 1279 4 global global JJ cord-000248-zueoyesj 1279 5 splicing splicing NN cord-000248-zueoyesj 1279 6 disorders disorder NNS cord-000248-zueoyesj 1279 7 in in IN cord-000248-zueoyesj 1279 8 cancer cancer NN cord-000248-zueoyesj 1279 9 Computing compute VBG cord-000248-zueoyesj 1279 10 the the DT cord-000248-zueoyesj 1279 11 optimal optimal JJ cord-000248-zueoyesj 1279 12 protocol protocol NN cord-000248-zueoyesj 1279 13 for for IN cord-000248-zueoyesj 1279 14 finite finite JJ cord-000248-zueoyesj 1279 15 - - HYPH cord-000248-zueoyesj 1279 16 time time NN cord-000248-zueoyesj 1279 17 processes process NNS cord-000248-zueoyesj 1279 18 in in IN cord-000248-zueoyesj 1279 19 stochastic stochastic JJ cord-000248-zueoyesj 1279 20 thermodynamics thermodynamic NNS cord-000248-zueoyesj 1280 1 Optimal optimal JJ cord-000248-zueoyesj 1280 2 finite finite JJ cord-000248-zueoyesj 1280 3 - - HYPH cord-000248-zueoyesj 1280 4 time time NN cord-000248-zueoyesj 1280 5 endoreversible endoreversible JJ cord-000248-zueoyesj 1280 6 processes process NNS cord-000248-zueoyesj 1280 7 Optimal Optimal NNP cord-000248-zueoyesj 1280 8 process process NN cord-000248-zueoyesj 1280 9 paths path NNS cord-000248-zueoyesj 1280 10 for for IN cord-000248-zueoyesj 1280 11 endoreversible endoreversible JJ cord-000248-zueoyesj 1280 12 systems system NNS cord-000248-zueoyesj 1280 13 Altered alter VBN cord-000248-zueoyesj 1280 14 mode mode NN cord-000248-zueoyesj 1280 15 of of IN cord-000248-zueoyesj 1280 16 allelic allelic JJ cord-000248-zueoyesj 1280 17 replication replication NN cord-000248-zueoyesj 1280 18 accompanied accompany VBN cord-000248-zueoyesj 1280 19 by by IN cord-000248-zueoyesj 1280 20 aneuploidy aneuploidy NN cord-000248-zueoyesj 1280 21 in in IN cord-000248-zueoyesj 1280 22 peripheral peripheral JJ cord-000248-zueoyesj 1280 23 blood blood NN cord-000248-zueoyesj 1280 24 lymphocytes lymphocyte NNS cord-000248-zueoyesj 1280 25 of of IN cord-000248-zueoyesj 1280 26 prostate prostate NN cord-000248-zueoyesj 1280 27 cancer cancer NN cord-000248-zueoyesj 1280 28 patients patient NNS cord-000248-zueoyesj 1281 1 A a DT cord-000248-zueoyesj 1281 2 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1281 3 interpretation interpretation NN cord-000248-zueoyesj 1281 4 of of IN cord-000248-zueoyesj 1281 5 malignancy malignancy NN cord-000248-zueoyesj 1281 6 : : : cord-000248-zueoyesj 1281 7 do do VB cord-000248-zueoyesj 1281 8 the the DT cord-000248-zueoyesj 1281 9 genes gene NNS cord-000248-zueoyesj 1281 10 come come VB cord-000248-zueoyesj 1281 11 later later RB cord-000248-zueoyesj 1281 12 ? ? . cord-000248-zueoyesj 1282 1 The the DT cord-000248-zueoyesj 1282 2 storage storage NN cord-000248-zueoyesj 1282 3 of of IN cord-000248-zueoyesj 1282 4 energy energy NN cord-000248-zueoyesj 1282 5 as as IN cord-000248-zueoyesj 1282 6 a a DT cord-000248-zueoyesj 1282 7 cause cause NN cord-000248-zueoyesj 1282 8 of of IN cord-000248-zueoyesj 1282 9 malignant malignant JJ cord-000248-zueoyesj 1282 10 transformation transformation NN cord-000248-zueoyesj 1282 11 : : : cord-000248-zueoyesj 1282 12 a a DT cord-000248-zueoyesj 1282 13 7-phase 7-phase CD cord-000248-zueoyesj 1282 14 model model NN cord-000248-zueoyesj 1282 15 of of IN cord-000248-zueoyesj 1282 16 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1282 17 Biology biology NN cord-000248-zueoyesj 1282 18 of of IN cord-000248-zueoyesj 1282 19 cancer cancer NN cord-000248-zueoyesj 1282 20 : : : cord-000248-zueoyesj 1282 21 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1282 22 answers answer NNS cord-000248-zueoyesj 1282 23 to to IN cord-000248-zueoyesj 1282 24 some some DT cord-000248-zueoyesj 1282 25 questions question NNS cord-000248-zueoyesj 1282 26 Cervical cervical JJ cord-000248-zueoyesj 1282 27 cancer cancer NN cord-000248-zueoyesj 1282 28 as as IN cord-000248-zueoyesj 1282 29 a a DT cord-000248-zueoyesj 1282 30 natural natural JJ cord-000248-zueoyesj 1282 31 phenomenon phenomenon NN cord-000248-zueoyesj 1282 32 Information information NN cord-000248-zueoyesj 1282 33 of of IN cord-000248-zueoyesj 1282 34 genome genome NN cord-000248-zueoyesj 1282 35 sequences sequence NNS cord-000248-zueoyesj 1282 36 and and CC cord-000248-zueoyesj 1282 37 molecular molecular JJ cord-000248-zueoyesj 1282 38 basis basis NN cord-000248-zueoyesj 1282 39 of of IN cord-000248-zueoyesj 1282 40 cancer cancer NN cord-000248-zueoyesj 1282 41 Maxwell Maxwell NNP cord-000248-zueoyesj 1282 42 's 's POS cord-000248-zueoyesj 1282 43 demon demon NN cord-000248-zueoyesj 1282 44 and and CC cord-000248-zueoyesj 1282 45 Smoluchowski Smoluchowski NNP cord-000248-zueoyesj 1282 46 's 's POS cord-000248-zueoyesj 1282 47 trap trap NN cord-000248-zueoyesj 1282 48 door door NN cord-000248-zueoyesj 1282 49 Maxwell Maxwell NNP cord-000248-zueoyesj 1282 50 's 's POS cord-000248-zueoyesj 1282 51 demon demon NN cord-000248-zueoyesj 1282 52 assisted assist VBD cord-000248-zueoyesj 1282 53 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1282 54 cycle cycle NN cord-000248-zueoyesj 1282 55 in in IN cord-000248-zueoyesj 1282 56 superconducting superconducte VBG cord-000248-zueoyesj 1282 57 quantum quantum NN cord-000248-zueoyesj 1282 58 circuits circuit NNS cord-000248-zueoyesj 1283 1 Ponderomotive ponderomotive JJ cord-000248-zueoyesj 1283 2 ratchet ratchet NN cord-000248-zueoyesj 1283 3 in in IN cord-000248-zueoyesj 1283 4 a a DT cord-000248-zueoyesj 1283 5 uniform uniform JJ cord-000248-zueoyesj 1283 6 magnetic magnetic JJ cord-000248-zueoyesj 1283 7 field field NN cord-000248-zueoyesj 1283 8 Protein Protein NNP cord-000248-zueoyesj 1283 9 folding folding NN cord-000248-zueoyesj 1283 10 and and CC cord-000248-zueoyesj 1283 11 evolution evolution NN cord-000248-zueoyesj 1283 12 are be VBP cord-000248-zueoyesj 1283 13 driven drive VBN cord-000248-zueoyesj 1283 14 by by IN cord-000248-zueoyesj 1283 15 the the DT cord-000248-zueoyesj 1283 16 Maxwell Maxwell NNP cord-000248-zueoyesj 1283 17 Demon Demon NNP cord-000248-zueoyesj 1283 18 activity activity NN cord-000248-zueoyesj 1283 19 of of IN cord-000248-zueoyesj 1283 20 proteins protein NNS cord-000248-zueoyesj 1283 21 Current current JJ cord-000248-zueoyesj 1283 22 drive drive NN cord-000248-zueoyesj 1283 23 in in IN cord-000248-zueoyesj 1283 24 a a DT cord-000248-zueoyesj 1283 25 ponderomotive ponderomotive JJ cord-000248-zueoyesj 1283 26 potential potential NN cord-000248-zueoyesj 1283 27 with with IN cord-000248-zueoyesj 1283 28 sign sign NN cord-000248-zueoyesj 1283 29 reversal reversal NN cord-000248-zueoyesj 1283 30 Global Global NNP cord-000248-zueoyesj 1283 31 and and CC cord-000248-zueoyesj 1283 32 local local JJ cord-000248-zueoyesj 1283 33 ) ) -RRB- cord-000248-zueoyesj 1283 34 fluctuations fluctuation NNS cord-000248-zueoyesj 1283 35 of of IN cord-000248-zueoyesj 1283 36 phase phase NN cord-000248-zueoyesj 1283 37 space space NN cord-000248-zueoyesj 1283 38 contraction contraction NN cord-000248-zueoyesj 1283 39 in in IN cord-000248-zueoyesj 1283 40 deterministic deterministic JJ cord-000248-zueoyesj 1283 41 stationary stationary JJ cord-000248-zueoyesj 1283 42 nonequilibrium nonequilibrium JJ cord-000248-zueoyesj 1284 1 The the DT cord-000248-zueoyesj 1284 2 Szilard Szilard NNP cord-000248-zueoyesj 1284 3 engine engine NN cord-000248-zueoyesj 1284 4 revisited revisit VBD cord-000248-zueoyesj 1284 5 : : : cord-000248-zueoyesj 1285 1 Entropy entropy NN cord-000248-zueoyesj 1285 2 , , , cord-000248-zueoyesj 1285 3 macroscopic macroscopic JJ cord-000248-zueoyesj 1285 4 randomness randomness NN cord-000248-zueoyesj 1285 5 , , , cord-000248-zueoyesj 1285 6 and and CC cord-000248-zueoyesj 1285 7 symmetry symmetry NN cord-000248-zueoyesj 1285 8 breaking breaking NN cord-000248-zueoyesj 1285 9 phase phase NN cord-000248-zueoyesj 1285 10 transitions transition NNS cord-000248-zueoyesj 1285 11 Hydrodynamic Hydrodynamic NNP cord-000248-zueoyesj 1285 12 Maxwell Maxwell NNP cord-000248-zueoyesj 1285 13 demon demon NN cord-000248-zueoyesj 1285 14 in in IN cord-000248-zueoyesj 1285 15 granular granular JJ cord-000248-zueoyesj 1285 16 systems system NNS cord-000248-zueoyesj 1285 17 Evolution evolution NN cord-000248-zueoyesj 1285 18 of of IN cord-000248-zueoyesj 1285 19 biological biological JJ cord-000248-zueoyesj 1285 20 complexity complexity NN cord-000248-zueoyesj 1285 21 Adaptation adaptation NN cord-000248-zueoyesj 1285 22 and and CC cord-000248-zueoyesj 1285 23 information information NN cord-000248-zueoyesj 1285 24 in in IN cord-000248-zueoyesj 1285 25 ontogenesis ontogenesis NN cord-000248-zueoyesj 1285 26 and and CC cord-000248-zueoyesj 1285 27 phylogenesis phylogenesis NN cord-000248-zueoyesj 1285 28 . . . cord-000248-zueoyesj 1286 1 Increase increase NN cord-000248-zueoyesj 1286 2 of of IN cord-000248-zueoyesj 1286 3 complexity complexity NN cord-000248-zueoyesj 1286 4 and and CC cord-000248-zueoyesj 1286 5 efficiency efficiency NN cord-000248-zueoyesj 1286 6 Use use NN cord-000248-zueoyesj 1286 7 of of IN cord-000248-zueoyesj 1286 8 glucose glucose NN cord-000248-zueoyesj 1286 9 6-phosphate 6-phosphate NN cord-000248-zueoyesj 1286 10 and and CC cord-000248-zueoyesj 1286 11 hexokinase hexokinase NN cord-000248-zueoyesj 1286 12 as as IN cord-000248-zueoyesj 1286 13 an an DT cord-000248-zueoyesj 1286 14 ATP ATP NNP cord-000248-zueoyesj 1286 15 regenerating regenerate VBG cord-000248-zueoyesj 1286 16 system system NN cord-000248-zueoyesj 1286 17 by by IN cord-000248-zueoyesj 1286 18 the the DT cord-000248-zueoyesj 1286 19 Ca(2+)-ATPase Ca(2+)-ATPase NNP cord-000248-zueoyesj 1286 20 of of IN cord-000248-zueoyesj 1286 21 sarcoplasmic sarcoplasmic JJ cord-000248-zueoyesj 1286 22 reticulum reticulum NN cord-000248-zueoyesj 1286 23 and and CC cord-000248-zueoyesj 1286 24 submitochondrial submitochondrial JJ cord-000248-zueoyesj 1286 25 particles particle NNS cord-000248-zueoyesj 1287 1 Maxwell Maxwell NNP cord-000248-zueoyesj 1287 2 's 's POS cord-000248-zueoyesj 1287 3 Demon Demon NNP cord-000248-zueoyesj 1287 4 Anderson Anderson NNP cord-000248-zueoyesj 1287 5 PW PW NNP cord-000248-zueoyesj 1287 6 Comment comment NN cord-000248-zueoyesj 1287 7 on on IN cord-000248-zueoyesj 1287 8 '' '' '' cord-000248-zueoyesj 1288 1 Quantitative quantitative JJ cord-000248-zueoyesj 1288 2 limits limit NNS cord-000248-zueoyesj 1288 3 on on IN cord-000248-zueoyesj 1288 4 the the DT cord-000248-zueoyesj 1288 5 ability ability NN cord-000248-zueoyesj 1288 6 of of IN cord-000248-zueoyesj 1288 7 a a DT cord-000248-zueoyesj 1288 8 Maxwell Maxwell NNP cord-000248-zueoyesj 1288 9 demon demon NN cord-000248-zueoyesj 1288 10 to to TO cord-000248-zueoyesj 1288 11 extract extract VB cord-000248-zueoyesj 1288 12 work work NN cord-000248-zueoyesj 1288 13 from from IN cord-000248-zueoyesj 1288 14 heat heat NN cord-000248-zueoyesj 1288 15 Quantitative quantitative JJ cord-000248-zueoyesj 1288 16 limits limit NNS cord-000248-zueoyesj 1288 17 on on IN cord-000248-zueoyesj 1288 18 the the DT cord-000248-zueoyesj 1288 19 ability ability NN cord-000248-zueoyesj 1288 20 of of IN cord-000248-zueoyesj 1288 21 a a DT cord-000248-zueoyesj 1288 22 Maxwell Maxwell NNP cord-000248-zueoyesj 1288 23 demon demon NN cord-000248-zueoyesj 1288 24 to to TO cord-000248-zueoyesj 1288 25 extract extract VB cord-000248-zueoyesj 1288 26 work work NN cord-000248-zueoyesj 1288 27 from from IN cord-000248-zueoyesj 1288 28 heat heat NN cord-000248-zueoyesj 1288 29 Folding folding NN cord-000248-zueoyesj 1288 30 and and CC cord-000248-zueoyesj 1288 31 misfolding misfolde VBG cord-000248-zueoyesj 1288 32 mechanisms mechanism NNS cord-000248-zueoyesj 1288 33 of of IN cord-000248-zueoyesj 1288 34 the the DT cord-000248-zueoyesj 1288 35 p53 p53 NN cord-000248-zueoyesj 1288 36 DNA dna NN cord-000248-zueoyesj 1288 37 binding binding NN cord-000248-zueoyesj 1288 38 domain domain NN cord-000248-zueoyesj 1288 39 at at IN cord-000248-zueoyesj 1288 40 physiological physiological JJ cord-000248-zueoyesj 1288 41 temperature temperature NN cord-000248-zueoyesj 1288 42 Kinetic kinetic JJ cord-000248-zueoyesj 1288 43 partitioning partitioning NN cord-000248-zueoyesj 1288 44 during during IN cord-000248-zueoyesj 1288 45 folding folding NN cord-000248-zueoyesj 1288 46 of of IN cord-000248-zueoyesj 1288 47 the the DT cord-000248-zueoyesj 1288 48 p53 p53 NN cord-000248-zueoyesj 1288 49 DNA dna NN cord-000248-zueoyesj 1288 50 binding binding NN cord-000248-zueoyesj 1288 51 domain domain NN cord-000248-zueoyesj 1288 52 p53 p53 NN cord-000248-zueoyesj 1288 53 : : : cord-000248-zueoyesj 1288 54 guardian guardian NN cord-000248-zueoyesj 1288 55 of of IN cord-000248-zueoyesj 1288 56 the the DT cord-000248-zueoyesj 1288 57 genome genome NN cord-000248-zueoyesj 1288 58 and and CC cord-000248-zueoyesj 1288 59 policeman policeman NN cord-000248-zueoyesj 1288 60 of of IN cord-000248-zueoyesj 1288 61 the the DT cord-000248-zueoyesj 1288 62 oncogenes oncogene NNS cord-000248-zueoyesj 1288 63 in in IN cord-000248-zueoyesj 1288 64 mitochondria mitochondrion NNS cord-000248-zueoyesj 1288 65 enhances enhance VBZ cord-000248-zueoyesj 1288 66 the the DT cord-000248-zueoyesj 1288 67 accuracy accuracy NN cord-000248-zueoyesj 1288 68 of of IN cord-000248-zueoyesj 1288 69 DNA dna NN cord-000248-zueoyesj 1288 70 synthesis synthesis NN cord-000248-zueoyesj 1288 71 Structural structural JJ cord-000248-zueoyesj 1288 72 biology biology NN cord-000248-zueoyesj 1288 73 of of IN cord-000248-zueoyesj 1288 74 the the DT cord-000248-zueoyesj 1288 75 p53 p53 NN cord-000248-zueoyesj 1288 76 tumour tumour NN cord-000248-zueoyesj 1288 77 suppressor suppressor NN cord-000248-zueoyesj 1288 78 Temperature temperature NN cord-000248-zueoyesj 1288 79 sensitivity sensitivity NN cord-000248-zueoyesj 1288 80 for for IN cord-000248-zueoyesj 1288 81 conformation conformation NN cord-000248-zueoyesj 1288 82 is be VBZ cord-000248-zueoyesj 1288 83 an an DT cord-000248-zueoyesj 1288 84 intrinsic intrinsic JJ cord-000248-zueoyesj 1288 85 property property NN cord-000248-zueoyesj 1288 86 of of IN cord-000248-zueoyesj 1288 87 wild wild JJ cord-000248-zueoyesj 1288 88 - - HYPH cord-000248-zueoyesj 1288 89 type type NN cord-000248-zueoyesj 1288 90 p53 p53 NN cord-000248-zueoyesj 1288 91 Adaptive adaptive JJ cord-000248-zueoyesj 1288 92 response response NN cord-000248-zueoyesj 1288 93 of of IN cord-000248-zueoyesj 1288 94 the the DT cord-000248-zueoyesj 1288 95 skin skin NN cord-000248-zueoyesj 1288 96 to to IN cord-000248-zueoyesj 1288 97 UVB uvb NN cord-000248-zueoyesj 1288 98 damage damage NN cord-000248-zueoyesj 1288 99 : : : cord-000248-zueoyesj 1288 100 role role NN cord-000248-zueoyesj 1288 101 of of IN cord-000248-zueoyesj 1288 102 the the DT cord-000248-zueoyesj 1288 103 p53 p53 NN cord-000248-zueoyesj 1288 104 protein protein NN cord-000248-zueoyesj 1288 105 Tumorigenic tumorigenic JJ cord-000248-zueoyesj 1288 106 conversion conversion NN cord-000248-zueoyesj 1288 107 of of IN cord-000248-zueoyesj 1288 108 immortal immortal JJ cord-000248-zueoyesj 1288 109 human human JJ cord-000248-zueoyesj 1288 110 skin skin NN cord-000248-zueoyesj 1288 111 keratinocytes keratinocyte NNS cord-000248-zueoyesj 1288 112 ( ( -LRB- cord-000248-zueoyesj 1288 113 HaCaT HaCaT NNP cord-000248-zueoyesj 1288 114 ) ) -RRB- cord-000248-zueoyesj 1288 115 by by IN cord-000248-zueoyesj 1288 116 elevated elevated JJ cord-000248-zueoyesj 1288 117 temperature temperature NN cord-000248-zueoyesj 1289 1 The the DT cord-000248-zueoyesj 1289 2 story story NN cord-000248-zueoyesj 1289 3 of of IN cord-000248-zueoyesj 1289 4 the the DT cord-000248-zueoyesj 1289 5 discovery discovery NN cord-000248-zueoyesj 1289 6 of of IN cord-000248-zueoyesj 1289 7 aquaporins aquaporin NNS cord-000248-zueoyesj 1289 8 : : : cord-000248-zueoyesj 1289 9 convergent convergent JJ cord-000248-zueoyesj 1289 10 evolution evolution NN cord-000248-zueoyesj 1289 11 of of IN cord-000248-zueoyesj 1289 12 ideas idea NNS cord-000248-zueoyesj 1289 13 - - : cord-000248-zueoyesj 1289 14 but but CC cord-000248-zueoyesj 1289 15 who who WP cord-000248-zueoyesj 1289 16 got get VBD cord-000248-zueoyesj 1289 17 there there RB cord-000248-zueoyesj 1289 18 first first RB cord-000248-zueoyesj 1289 19 ? ? . cord-000248-zueoyesj 1290 1 Aquaporin Aquaporin NNP cord-000248-zueoyesj 1290 2 water water NN cord-000248-zueoyesj 1290 3 channels channel NNS cord-000248-zueoyesj 1290 4 : : : cord-000248-zueoyesj 1291 1 molecular molecular JJ cord-000248-zueoyesj 1291 2 mechanisms mechanism NNS cord-000248-zueoyesj 1291 3 for for IN cord-000248-zueoyesj 1291 4 human human JJ cord-000248-zueoyesj 1291 5 diseases disease NNS cord-000248-zueoyesj 1292 1 The the DT cord-000248-zueoyesj 1292 2 aquaporin aquaporin NN cord-000248-zueoyesj 1292 3 family family NN cord-000248-zueoyesj 1292 4 of of IN cord-000248-zueoyesj 1292 5 water water NN cord-000248-zueoyesj 1292 6 channels channel NNS cord-000248-zueoyesj 1292 7 in in IN cord-000248-zueoyesj 1292 8 kidney kidney NN cord-000248-zueoyesj 1292 9 Aquaporin Aquaporin NNP cord-000248-zueoyesj 1292 10 CHIP CHIP NNP cord-000248-zueoyesj 1292 11 : : : cord-000248-zueoyesj 1292 12 the the DT cord-000248-zueoyesj 1292 13 archetypal archetypal JJ cord-000248-zueoyesj 1292 14 molecular molecular JJ cord-000248-zueoyesj 1292 15 water water NN cord-000248-zueoyesj 1292 16 channel channel NN cord-000248-zueoyesj 1292 17 ABH ABH NNP cord-000248-zueoyesj 1292 18 and and CC cord-000248-zueoyesj 1292 19 Colton Colton NNP cord-000248-zueoyesj 1292 20 blood blood NN cord-000248-zueoyesj 1292 21 group group NN cord-000248-zueoyesj 1292 22 antigens antigen NNS cord-000248-zueoyesj 1292 23 on on IN cord-000248-zueoyesj 1292 24 aquaporin-1 aquaporin-1 NNP cord-000248-zueoyesj 1292 25 , , , cord-000248-zueoyesj 1292 26 the the DT cord-000248-zueoyesj 1292 27 human human JJ cord-000248-zueoyesj 1292 28 red red JJ cord-000248-zueoyesj 1292 29 cell cell NN cord-000248-zueoyesj 1292 30 water water NN cord-000248-zueoyesj 1292 31 channel channel NNP cord-000248-zueoyesj 1292 32 protein protein NNP cord-000248-zueoyesj 1292 33 Water Water NNP cord-000248-zueoyesj 1292 34 channel channel NN cord-000248-zueoyesj 1292 35 proteins protein NNS cord-000248-zueoyesj 1292 36 : : : cord-000248-zueoyesj 1292 37 from from IN cord-000248-zueoyesj 1292 38 their -PRON- PRP$ cord-000248-zueoyesj 1292 39 discovery discovery NN cord-000248-zueoyesj 1292 40 in in IN cord-000248-zueoyesj 1292 41 1985 1985 CD cord-000248-zueoyesj 1292 42 in in IN cord-000248-zueoyesj 1292 43 Cluj Cluj NNP cord-000248-zueoyesj 1292 44 - - HYPH cord-000248-zueoyesj 1292 45 Napoca Napoca NNP cord-000248-zueoyesj 1292 46 , , , cord-000248-zueoyesj 1292 47 Romania Romania NNP cord-000248-zueoyesj 1292 48 , , , cord-000248-zueoyesj 1292 49 to to IN cord-000248-zueoyesj 1292 50 the the DT cord-000248-zueoyesj 1292 51 2003 2003 CD cord-000248-zueoyesj 1292 52 Nobel Nobel NNP cord-000248-zueoyesj 1292 53 Prize Prize NNP cord-000248-zueoyesj 1292 54 in in IN cord-000248-zueoyesj 1292 55 Chemistry Chemistry NNP cord-000248-zueoyesj 1292 56 Structure Structure NNP cord-000248-zueoyesj 1292 57 - - HYPH cord-000248-zueoyesj 1292 58 function function NN cord-000248-zueoyesj 1292 59 relationships relationship NNS cord-000248-zueoyesj 1292 60 in in IN cord-000248-zueoyesj 1292 61 aquaporins aquaporin NNS cord-000248-zueoyesj 1292 62 A a DT cord-000248-zueoyesj 1292 63 brief brief JJ cord-000248-zueoyesj 1292 64 survey survey NN cord-000248-zueoyesj 1292 65 of of IN cord-000248-zueoyesj 1292 66 aquaporins aquaporin NNS cord-000248-zueoyesj 1292 67 and and CC cord-000248-zueoyesj 1292 68 their -PRON- PRP$ cord-000248-zueoyesj 1292 69 implications implication NNS cord-000248-zueoyesj 1292 70 for for IN cord-000248-zueoyesj 1292 71 renal renal JJ cord-000248-zueoyesj 1292 72 physiology physiology NN cord-000248-zueoyesj 1293 1 The the DT cord-000248-zueoyesj 1293 2 structural structural JJ cord-000248-zueoyesj 1293 3 basis basis NN cord-000248-zueoyesj 1293 4 of of IN cord-000248-zueoyesj 1293 5 water water NN cord-000248-zueoyesj 1293 6 permeation permeation NN cord-000248-zueoyesj 1293 7 and and CC cord-000248-zueoyesj 1293 8 proton proton NN cord-000248-zueoyesj 1293 9 exclusion exclusion NN cord-000248-zueoyesj 1293 10 in in IN cord-000248-zueoyesj 1293 11 aquaporins aquaporin NNS cord-000248-zueoyesj 1293 12 Concerted concerted JJ cord-000248-zueoyesj 1293 13 action action NN cord-000248-zueoyesj 1293 14 of of IN cord-000248-zueoyesj 1293 15 two two CD cord-000248-zueoyesj 1293 16 cation cation NN cord-000248-zueoyesj 1293 17 filters filter NNS cord-000248-zueoyesj 1293 18 in in IN cord-000248-zueoyesj 1293 19 the the DT cord-000248-zueoyesj 1293 20 aquaporin aquaporin NNP cord-000248-zueoyesj 1293 21 water water NNP cord-000248-zueoyesj 1293 22 channel channel NNP cord-000248-zueoyesj 1293 23 Knock Knock NNP cord-000248-zueoyesj 1293 24 - - HYPH cord-000248-zueoyesj 1293 25 out out RP cord-000248-zueoyesj 1293 26 models model NNS cord-000248-zueoyesj 1293 27 reveal reveal VBP cord-000248-zueoyesj 1293 28 new new JJ cord-000248-zueoyesj 1293 29 aquaporin aquaporin NN cord-000248-zueoyesj 1293 30 functions function NNS cord-000248-zueoyesj 1293 31 Involvement Involvement NNP cord-000248-zueoyesj 1293 32 of of IN cord-000248-zueoyesj 1293 33 aquaporin-5 aquaporin-5 NNP cord-000248-zueoyesj 1293 34 in in IN cord-000248-zueoyesj 1293 35 differentiation differentiation NN cord-000248-zueoyesj 1293 36 of of IN cord-000248-zueoyesj 1293 37 human human JJ cord-000248-zueoyesj 1293 38 gastric gastric JJ cord-000248-zueoyesj 1293 39 cancer cancer NN cord-000248-zueoyesj 1293 40 cells cell NNS cord-000248-zueoyesj 1293 41 Aquaporins Aquaporins NNP cord-000248-zueoyesj 1293 42 - - HYPH cord-000248-zueoyesj 1293 43 new new JJ cord-000248-zueoyesj 1293 44 players player NNS cord-000248-zueoyesj 1293 45 in in IN cord-000248-zueoyesj 1293 46 cancer cancer NN cord-000248-zueoyesj 1293 47 biology biology NN cord-000248-zueoyesj 1293 48 Role role NN cord-000248-zueoyesj 1293 49 of of IN cord-000248-zueoyesj 1293 50 human human JJ cord-000248-zueoyesj 1293 51 aquaporin aquaporin NNP cord-000248-zueoyesj 1293 52 5 5 CD cord-000248-zueoyesj 1293 53 in in IN cord-000248-zueoyesj 1293 54 colorectal colorectal JJ cord-000248-zueoyesj 1293 55 carcinogenesis carcinogenesis NN cord-000248-zueoyesj 1293 56 Prevention prevention NN cord-000248-zueoyesj 1293 57 of of IN cord-000248-zueoyesj 1293 58 skin skin NN cord-000248-zueoyesj 1293 59 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1293 60 and and CC cord-000248-zueoyesj 1293 61 impairment impairment NN cord-000248-zueoyesj 1293 62 of of IN cord-000248-zueoyesj 1293 63 epidermal epidermal JJ cord-000248-zueoyesj 1293 64 cell cell NN cord-000248-zueoyesj 1293 65 proliferation proliferation NN cord-000248-zueoyesj 1293 66 by by IN cord-000248-zueoyesj 1293 67 targeted target VBN cord-000248-zueoyesj 1293 68 aquaporin-3 aquaporin-3 NN cord-000248-zueoyesj 1293 69 gene gene NN cord-000248-zueoyesj 1293 70 disruption disruption NN cord-000248-zueoyesj 1293 71 Aquaporin-3 Aquaporin-3 NNP cord-000248-zueoyesj 1293 72 facilitates facilitate VBZ cord-000248-zueoyesj 1293 73 epidermal epidermal JJ cord-000248-zueoyesj 1293 74 cell cell NN cord-000248-zueoyesj 1293 75 migration migration NN cord-000248-zueoyesj 1293 76 and and CC cord-000248-zueoyesj 1293 77 proliferation proliferation NN cord-000248-zueoyesj 1293 78 during during IN cord-000248-zueoyesj 1293 79 wound wound NN cord-000248-zueoyesj 1293 80 healing heal VBG cord-000248-zueoyesj 1293 81 Roles role NNS cord-000248-zueoyesj 1293 82 of of IN cord-000248-zueoyesj 1293 83 aquaporin-3 aquaporin-3 NNP cord-000248-zueoyesj 1293 84 in in IN cord-000248-zueoyesj 1293 85 the the DT cord-000248-zueoyesj 1293 86 epidermis epidermis NN cord-000248-zueoyesj 1293 87 Expression expression NN cord-000248-zueoyesj 1293 88 profile profile NN cord-000248-zueoyesj 1293 89 of of IN cord-000248-zueoyesj 1293 90 early early JJ cord-000248-zueoyesj 1293 91 lung lung NN cord-000248-zueoyesj 1293 92 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1293 93 : : : cord-000248-zueoyesj 1293 94 identification identification NN cord-000248-zueoyesj 1293 95 of of IN cord-000248-zueoyesj 1293 96 MRP3 MRP3 NNP cord-000248-zueoyesj 1293 97 as as IN cord-000248-zueoyesj 1293 98 a a DT cord-000248-zueoyesj 1293 99 molecular molecular JJ cord-000248-zueoyesj 1293 100 marker marker NN cord-000248-zueoyesj 1293 101 for for IN cord-000248-zueoyesj 1293 102 early early JJ cord-000248-zueoyesj 1293 103 progression progression NN cord-000248-zueoyesj 1293 104 Expression expression NN cord-000248-zueoyesj 1293 105 of of IN cord-000248-zueoyesj 1293 106 aquaporin aquaporin NNP cord-000248-zueoyesj 1293 107 3 3 CD cord-000248-zueoyesj 1293 108 in in IN cord-000248-zueoyesj 1293 109 the the DT cord-000248-zueoyesj 1293 110 human human JJ cord-000248-zueoyesj 1293 111 prostate prostate NN cord-000248-zueoyesj 1293 112 Expression Expression NNP cord-000248-zueoyesj 1293 113 of of IN cord-000248-zueoyesj 1293 114 aquaporin aquaporin NNP cord-000248-zueoyesj 1293 115 3 3 CD cord-000248-zueoyesj 1293 116 ( ( -LRB- cord-000248-zueoyesj 1293 117 AQP3 AQP3 NNP cord-000248-zueoyesj 1293 118 ) ) -RRB- cord-000248-zueoyesj 1293 119 in in IN cord-000248-zueoyesj 1293 120 normal normal JJ cord-000248-zueoyesj 1293 121 and and CC cord-000248-zueoyesj 1293 122 neoplastic neoplastic JJ cord-000248-zueoyesj 1293 123 lung lung NN cord-000248-zueoyesj 1293 124 tissues tissue NNS cord-000248-zueoyesj 1293 125 Role role NN cord-000248-zueoyesj 1293 126 of of IN cord-000248-zueoyesj 1293 127 aquaporin-7 aquaporin-7 NNP cord-000248-zueoyesj 1293 128 and and CC cord-000248-zueoyesj 1293 129 aquaporin-9 aquaporin-9 VB cord-000248-zueoyesj 1293 130 in in IN cord-000248-zueoyesj 1293 131 glycerol glycerol NN cord-000248-zueoyesj 1293 132 metabolism metabolism NN cord-000248-zueoyesj 1294 1 Genetic genetic JJ cord-000248-zueoyesj 1294 2 conservation conservation NN cord-000248-zueoyesj 1294 3 of of IN cord-000248-zueoyesj 1294 4 the the DT cord-000248-zueoyesj 1294 5 GIL GIL NNP cord-000248-zueoyesj 1294 6 blood blood NN cord-000248-zueoyesj 1294 7 group group NN cord-000248-zueoyesj 1294 8 determining determine VBG cord-000248-zueoyesj 1294 9 aquaporin aquaporin NNP cord-000248-zueoyesj 1294 10 3 3 CD cord-000248-zueoyesj 1294 11 gene gene NN cord-000248-zueoyesj 1294 12 in in IN cord-000248-zueoyesj 1294 13 African african JJ cord-000248-zueoyesj 1294 14 and and CC cord-000248-zueoyesj 1294 15 Caucasian caucasian JJ cord-000248-zueoyesj 1294 16 populations population NNS cord-000248-zueoyesj 1294 17 Aquaporin Aquaporin NNP cord-000248-zueoyesj 1294 18 9 9 CD cord-000248-zueoyesj 1294 19 is be VBZ cord-000248-zueoyesj 1294 20 the the DT cord-000248-zueoyesj 1294 21 major major JJ cord-000248-zueoyesj 1294 22 pathway pathway NN cord-000248-zueoyesj 1294 23 for for IN cord-000248-zueoyesj 1294 24 glycerol glycerol NN cord-000248-zueoyesj 1294 25 uptake uptake NN cord-000248-zueoyesj 1294 26 by by IN cord-000248-zueoyesj 1294 27 mouse mouse NN cord-000248-zueoyesj 1294 28 erythrocytes erythrocyte NNS cord-000248-zueoyesj 1294 29 , , , cord-000248-zueoyesj 1294 30 with with IN cord-000248-zueoyesj 1294 31 implications implication NNS cord-000248-zueoyesj 1294 32 for for IN cord-000248-zueoyesj 1294 33 malarial malarial JJ cord-000248-zueoyesj 1294 34 virulence virulence NN cord-000248-zueoyesj 1294 35 pH ph NN cord-000248-zueoyesj 1294 36 regulated regulate VBN cord-000248-zueoyesj 1294 37 anion anion NN cord-000248-zueoyesj 1294 38 permeability permeability NN cord-000248-zueoyesj 1294 39 of of IN cord-000248-zueoyesj 1294 40 aquaporin-6 aquaporin-6 NNP cord-000248-zueoyesj 1295 1 Temporal temporal JJ cord-000248-zueoyesj 1295 2 changes change NNS cord-000248-zueoyesj 1295 3 in in IN cord-000248-zueoyesj 1295 4 expression expression NN cord-000248-zueoyesj 1295 5 of of IN cord-000248-zueoyesj 1295 6 aquaporin3 aquaporin3 NN cord-000248-zueoyesj 1295 7 , , , cord-000248-zueoyesj 1296 1 -4 -4 NNP cord-000248-zueoyesj 1296 2 , , , cord-000248-zueoyesj 1296 3 -5 -5 NNP cord-000248-zueoyesj 1296 4 and and CC cord-000248-zueoyesj 1296 5 -8 -8 . cord-000248-zueoyesj 1297 1 in in IN cord-000248-zueoyesj 1297 2 rat rat NN cord-000248-zueoyesj 1297 3 brains brain NNS cord-000248-zueoyesj 1297 4 after after IN cord-000248-zueoyesj 1297 5 permanent permanent JJ cord-000248-zueoyesj 1297 6 focal focal JJ cord-000248-zueoyesj 1297 7 cerebral cerebral JJ cord-000248-zueoyesj 1297 8 ischemia ischemia NN cord-000248-zueoyesj 1297 9 Expression expression NN cord-000248-zueoyesj 1297 10 of of IN cord-000248-zueoyesj 1297 11 renal renal JJ cord-000248-zueoyesj 1297 12 aquaporins aquaporin NNS cord-000248-zueoyesj 1298 1 is be VBZ cord-000248-zueoyesj 1298 2 down down RB cord-000248-zueoyesj 1298 3 - - HYPH cord-000248-zueoyesj 1298 4 regulated regulate VBN cord-000248-zueoyesj 1298 5 in in IN cord-000248-zueoyesj 1298 6 children child NNS cord-000248-zueoyesj 1298 7 with with IN cord-000248-zueoyesj 1298 8 congenital congenital JJ cord-000248-zueoyesj 1298 9 hydronephrosis hydronephrosis NN cord-000248-zueoyesj 1298 10 Aquaporins Aquaporins NNP cord-000248-zueoyesj 1298 11 as as IN cord-000248-zueoyesj 1298 12 potential potential JJ cord-000248-zueoyesj 1298 13 drug drug NN cord-000248-zueoyesj 1298 14 targets target NNS cord-000248-zueoyesj 1298 15 for for IN cord-000248-zueoyesj 1298 16 Meniere Meniere NNP cord-000248-zueoyesj 1298 17 's 's POS cord-000248-zueoyesj 1298 18 disease disease NN cord-000248-zueoyesj 1298 19 and and CC cord-000248-zueoyesj 1298 20 its -PRON- PRP$ cord-000248-zueoyesj 1298 21 related related JJ cord-000248-zueoyesj 1298 22 diseases disease NNS cord-000248-zueoyesj 1298 23 In in IN cord-000248-zueoyesj 1298 24 situ situ NN cord-000248-zueoyesj 1298 25 fluorescence fluorescence NN cord-000248-zueoyesj 1298 26 measurement measurement NN cord-000248-zueoyesj 1298 27 of of IN cord-000248-zueoyesj 1298 28 tear tear JJ cord-000248-zueoyesj 1298 29 film film NN cord-000248-zueoyesj 1298 30 [ [ -LRB- cord-000248-zueoyesj 1298 31 Na+ na+ NN cord-000248-zueoyesj 1298 32 ] ] -RRB- cord-000248-zueoyesj 1298 33 , , , cord-000248-zueoyesj 1298 34 [ [ -LRB- cord-000248-zueoyesj 1298 35 K+ K+ NNP cord-000248-zueoyesj 1298 36 ] ] -RRB- cord-000248-zueoyesj 1298 37 , , , cord-000248-zueoyesj 1298 38 [ [ -LRB- cord-000248-zueoyesj 1298 39 Cl2 Cl2 NNP cord-000248-zueoyesj 1298 40 ] ] -RRB- cord-000248-zueoyesj 1298 41 , , , cord-000248-zueoyesj 1298 42 and and CC cord-000248-zueoyesj 1298 43 pH ph NN cord-000248-zueoyesj 1298 44 in in IN cord-000248-zueoyesj 1298 45 mice mouse NNS cord-000248-zueoyesj 1299 1 shows show NNS cord-000248-zueoyesj 1299 2 marked mark VBD cord-000248-zueoyesj 1299 3 hypertonicity hypertonicity NN cord-000248-zueoyesj 1299 4 in in IN cord-000248-zueoyesj 1299 5 aquaporin-5 aquaporin-5 NNP cord-000248-zueoyesj 1299 6 deficiency deficiency NN cord-000248-zueoyesj 1299 7 Regulation regulation NN cord-000248-zueoyesj 1299 8 of of IN cord-000248-zueoyesj 1299 9 aquaporin-2 aquaporin-2 NNP cord-000248-zueoyesj 1299 10 trafficking traffic VBG cord-000248-zueoyesj 1299 11 The the DT cord-000248-zueoyesj 1299 12 role role NN cord-000248-zueoyesj 1299 13 of of IN cord-000248-zueoyesj 1299 14 water water NN cord-000248-zueoyesj 1299 15 channel channel NNP cord-000248-zueoyesj 1299 16 aquaporin aquaporin NNP cord-000248-zueoyesj 1299 17 3 3 CD cord-000248-zueoyesj 1299 18 in in IN cord-000248-zueoyesj 1299 19 the the DT cord-000248-zueoyesj 1299 20 mechanism mechanism NN cord-000248-zueoyesj 1299 21 of of IN cord-000248-zueoyesj 1299 22 TNF TNF NNP cord-000248-zueoyesj 1299 23 - - HYPH cord-000248-zueoyesj 1299 24 alphamediated alphamediate VBN cord-000248-zueoyesj 1299 25 proinflammatory proinflammatory JJ cord-000248-zueoyesj 1299 26 events event NNS cord-000248-zueoyesj 1299 27 : : : cord-000248-zueoyesj 1299 28 Implication implication NN cord-000248-zueoyesj 1299 29 in in IN cord-000248-zueoyesj 1299 30 periodontal periodontal JJ cord-000248-zueoyesj 1299 31 inflammation inflammation NN cord-000248-zueoyesj 1300 1 Nephrogenic nephrogenic JJ cord-000248-zueoyesj 1300 2 diabetes diabete VBZ cord-000248-zueoyesj 1300 3 insipidus insipidus NN cord-000248-zueoyesj 1300 4 in in IN cord-000248-zueoyesj 1300 5 mice mouse NNS cord-000248-zueoyesj 1300 6 lacking lack VBG cord-000248-zueoyesj 1300 7 aquaporin-3 aquaporin-3 NN cord-000248-zueoyesj 1300 8 water water NN cord-000248-zueoyesj 1300 9 channels channel NNS cord-000248-zueoyesj 1301 1 The the DT cord-000248-zueoyesj 1301 2 role role NN cord-000248-zueoyesj 1301 3 of of IN cord-000248-zueoyesj 1301 4 aquaporins aquaporin NNS cord-000248-zueoyesj 1301 5 in in IN cord-000248-zueoyesj 1301 6 dendritic dendritic JJ cord-000248-zueoyesj 1301 7 cell cell NN cord-000248-zueoyesj 1301 8 macropinocytosis macropinocytosis NNP cord-000248-zueoyesj 1301 9 Structure Structure NNP cord-000248-zueoyesj 1301 10 and and CC cord-000248-zueoyesj 1301 11 function function NN cord-000248-zueoyesj 1301 12 of of IN cord-000248-zueoyesj 1301 13 aquaporin aquaporin NNP cord-000248-zueoyesj 1301 14 water water NN cord-000248-zueoyesj 1301 15 channels channel NNS cord-000248-zueoyesj 1301 16 Selection Selection NNP cord-000248-zueoyesj 1301 17 of of IN cord-000248-zueoyesj 1301 18 Discriminative Discriminative NNP cord-000248-zueoyesj 1301 19 Genes Genes NNPS cord-000248-zueoyesj 1301 20 in in IN cord-000248-zueoyesj 1301 21 Microarray Microarray NNP cord-000248-zueoyesj 1301 22 Experiments experiment NNS cord-000248-zueoyesj 1301 23 using use VBG cord-000248-zueoyesj 1301 24 Mathematical Mathematical NNP cord-000248-zueoyesj 1301 25 Programming Programming NNP cord-000248-zueoyesj 1301 26 Inhibition Inhibition NNP cord-000248-zueoyesj 1301 27 of of IN cord-000248-zueoyesj 1301 28 the the DT cord-000248-zueoyesj 1301 29 aquaporin aquaporin NNP cord-000248-zueoyesj 1301 30 3 3 CD cord-000248-zueoyesj 1301 31 water water NN cord-000248-zueoyesj 1301 32 channel channel NN cord-000248-zueoyesj 1301 33 increases increase VBZ cord-000248-zueoyesj 1301 34 the the DT cord-000248-zueoyesj 1301 35 sensitivity sensitivity NN cord-000248-zueoyesj 1301 36 of of IN cord-000248-zueoyesj 1301 37 prostate prostate NN cord-000248-zueoyesj 1301 38 cancer cancer NN cord-000248-zueoyesj 1301 39 cells cell NNS cord-000248-zueoyesj 1301 40 to to IN cord-000248-zueoyesj 1301 41 cryotherapy cryotherapy NN cord-000248-zueoyesj 1301 42 Point point NN cord-000248-zueoyesj 1301 43 mutations mutation NNS cord-000248-zueoyesj 1301 44 in in IN cord-000248-zueoyesj 1301 45 the the DT cord-000248-zueoyesj 1301 46 aromatic aromatic JJ cord-000248-zueoyesj 1301 47 / / SYM cord-000248-zueoyesj 1301 48 arginine arginine NN cord-000248-zueoyesj 1301 49 region region NN cord-000248-zueoyesj 1301 50 in in IN cord-000248-zueoyesj 1301 51 aquaporin aquaporin NNP cord-000248-zueoyesj 1301 52 1 1 CD cord-000248-zueoyesj 1301 53 allow allow VBP cord-000248-zueoyesj 1301 54 passage passage NN cord-000248-zueoyesj 1301 55 of of IN cord-000248-zueoyesj 1301 56 urea urea NN cord-000248-zueoyesj 1301 57 , , , cord-000248-zueoyesj 1301 58 glycerol glycerol NN cord-000248-zueoyesj 1301 59 , , , cord-000248-zueoyesj 1301 60 ammonia ammonia NN cord-000248-zueoyesj 1301 61 , , , cord-000248-zueoyesj 1301 62 and and CC cord-000248-zueoyesj 1301 63 protons proton NNS cord-000248-zueoyesj 1301 64 Mechanism Mechanism NNP cord-000248-zueoyesj 1301 65 of of IN cord-000248-zueoyesj 1301 66 aquaporin-4 aquaporin-4 NNP cord-000248-zueoyesj 1301 67 's 's POS cord-000248-zueoyesj 1301 68 fast fast JJ cord-000248-zueoyesj 1301 69 and and CC cord-000248-zueoyesj 1301 70 highly highly RB cord-000248-zueoyesj 1301 71 selective selective JJ cord-000248-zueoyesj 1301 72 water water NN cord-000248-zueoyesj 1301 73 conduction conduction NN cord-000248-zueoyesj 1301 74 and and CC cord-000248-zueoyesj 1301 75 proton proton NN cord-000248-zueoyesj 1301 76 exclusion exclusion NN cord-000248-zueoyesj 1301 77 Dynamics dynamic NNS cord-000248-zueoyesj 1301 78 and and CC cord-000248-zueoyesj 1301 79 energetics energetic NNS cord-000248-zueoyesj 1301 80 of of IN cord-000248-zueoyesj 1301 81 permeation permeation NN cord-000248-zueoyesj 1301 82 through through IN cord-000248-zueoyesj 1301 83 aquaporins aquaporin NNS cord-000248-zueoyesj 1301 84 . . . cord-000248-zueoyesj 1302 1 What what WP cord-000248-zueoyesj 1302 2 do do VBP cord-000248-zueoyesj 1302 3 we -PRON- PRP cord-000248-zueoyesj 1302 4 learn learn VB cord-000248-zueoyesj 1302 5 from from IN cord-000248-zueoyesj 1302 6 molecular molecular JJ cord-000248-zueoyesj 1302 7 dynamics dynamic NNS cord-000248-zueoyesj 1302 8 simulations simulation NNS cord-000248-zueoyesj 1302 9 ? ? . cord-000248-zueoyesj 1303 1 In in IN cord-000248-zueoyesj 1303 2 vitro vitro FW cord-000248-zueoyesj 1303 3 analysis analysis NN cord-000248-zueoyesj 1303 4 and and CC cord-000248-zueoyesj 1303 5 modification modification NN cord-000248-zueoyesj 1303 6 of of IN cord-000248-zueoyesj 1303 7 aquaporin aquaporin NNP cord-000248-zueoyesj 1303 8 pore pore NN cord-000248-zueoyesj 1303 9 selectivity selectivity NN cord-000248-zueoyesj 1303 10 Structure Structure NNP cord-000248-zueoyesj 1303 11 - - HYPH cord-000248-zueoyesj 1303 12 function function NN cord-000248-zueoyesj 1303 13 analysis analysis NN cord-000248-zueoyesj 1303 14 of of IN cord-000248-zueoyesj 1303 15 plant plant NN cord-000248-zueoyesj 1303 16 aquaporin aquaporin NNP cord-000248-zueoyesj 1304 1 AtPIP2;1 atpip2;1 IN cord-000248-zueoyesj 1304 2 gating gate VBG cord-000248-zueoyesj 1304 3 by by IN cord-000248-zueoyesj 1304 4 divalent divalent JJ cord-000248-zueoyesj 1304 5 cations cation NNS cord-000248-zueoyesj 1304 6 and and CC cord-000248-zueoyesj 1304 7 protons proton NNS cord-000248-zueoyesj 1304 8 Ion ion NN cord-000248-zueoyesj 1304 9 exclusion exclusion NN cord-000248-zueoyesj 1304 10 mechanism mechanism NN cord-000248-zueoyesj 1304 11 in in IN cord-000248-zueoyesj 1304 12 aquaporin aquaporin NNP cord-000248-zueoyesj 1304 13 at at IN cord-000248-zueoyesj 1304 14 an an DT cord-000248-zueoyesj 1304 15 atomistic atomistic JJ cord-000248-zueoyesj 1304 16 level level NN cord-000248-zueoyesj 1304 17 Aquaporins Aquaporins NNP cord-000248-zueoyesj 1304 18 with with IN cord-000248-zueoyesj 1304 19 selectivity selectivity NN cord-000248-zueoyesj 1304 20 for for IN cord-000248-zueoyesj 1304 21 unconventional unconventional JJ cord-000248-zueoyesj 1304 22 permeants permeant NNS cord-000248-zueoyesj 1304 23 Molecular Molecular NNP cord-000248-zueoyesj 1304 24 mechanisms mechanism NNS cord-000248-zueoyesj 1304 25 of of IN cord-000248-zueoyesj 1304 26 conduction conduction NN cord-000248-zueoyesj 1304 27 and and CC cord-000248-zueoyesj 1304 28 selectivity selectivity NN cord-000248-zueoyesj 1304 29 in in IN cord-000248-zueoyesj 1304 30 aquaporin aquaporin NNP cord-000248-zueoyesj 1304 31 water water NN cord-000248-zueoyesj 1304 32 channels channel NNS cord-000248-zueoyesj 1305 1 Fast fast JJ cord-000248-zueoyesj 1305 2 and and CC cord-000248-zueoyesj 1305 3 selective selective JJ cord-000248-zueoyesj 1305 4 ammonia ammonia NN cord-000248-zueoyesj 1305 5 transport transport NN cord-000248-zueoyesj 1305 6 by by IN cord-000248-zueoyesj 1305 7 aquaporin-8 aquaporin-8 NNP cord-000248-zueoyesj 1306 1 The the DT cord-000248-zueoyesj 1306 2 high high JJ cord-000248-zueoyesj 1306 3 diversity diversity NN cord-000248-zueoyesj 1306 4 and and CC cord-000248-zueoyesj 1306 5 regulation regulation NN cord-000248-zueoyesj 1306 6 of of IN cord-000248-zueoyesj 1306 7 plant plant NN cord-000248-zueoyesj 1306 8 water water NN cord-000248-zueoyesj 1306 9 channels channel NNS cord-000248-zueoyesj 1306 10 Charge charge VBP cord-000248-zueoyesj 1306 11 delocalization delocalization NN cord-000248-zueoyesj 1306 12 in in IN cord-000248-zueoyesj 1306 13 proton proton NN cord-000248-zueoyesj 1306 14 channels channel NNS cord-000248-zueoyesj 1306 15 , , , cord-000248-zueoyesj 1306 16 I -PRON- PRP cord-000248-zueoyesj 1306 17 : : : cord-000248-zueoyesj 1306 18 the the DT cord-000248-zueoyesj 1306 19 aquaporin aquaporin NNP cord-000248-zueoyesj 1306 20 channels channel NNS cord-000248-zueoyesj 1306 21 and and CC cord-000248-zueoyesj 1306 22 proton proton NN cord-000248-zueoyesj 1306 23 blockage blockage NN cord-000248-zueoyesj 1306 24 Regulation regulation NN cord-000248-zueoyesj 1306 25 of of IN cord-000248-zueoyesj 1306 26 selectivity selectivity NN cord-000248-zueoyesj 1306 27 and and CC cord-000248-zueoyesj 1306 28 translocation translocation NN cord-000248-zueoyesj 1306 29 of of IN cord-000248-zueoyesj 1306 30 aquaporins aquaporin NNS cord-000248-zueoyesj 1306 31 : : : cord-000248-zueoyesj 1306 32 an an DT cord-000248-zueoyesj 1306 33 update update NN cord-000248-zueoyesj 1306 34 Toward toward IN cord-000248-zueoyesj 1306 35 theoretical theoretical JJ cord-000248-zueoyesj 1306 36 analysis analysis NN cord-000248-zueoyesj 1306 37 of of IN cord-000248-zueoyesj 1306 38 long long JJ cord-000248-zueoyesj 1306 39 - - HYPH cord-000248-zueoyesj 1306 40 range range NN cord-000248-zueoyesj 1306 41 proton proton NN cord-000248-zueoyesj 1306 42 transfer transfer NN cord-000248-zueoyesj 1306 43 kinetics kinetic NNS cord-000248-zueoyesj 1306 44 in in IN cord-000248-zueoyesj 1306 45 biomolecular biomolecular JJ cord-000248-zueoyesj 1306 46 pumps pump NNS cord-000248-zueoyesj 1306 47 The the DT cord-000248-zueoyesj 1306 48 barrier barrier NN cord-000248-zueoyesj 1306 49 for for IN cord-000248-zueoyesj 1306 50 proton proton NN cord-000248-zueoyesj 1306 51 transport transport NN cord-000248-zueoyesj 1306 52 in in IN cord-000248-zueoyesj 1306 53 aquaporins aquaporin NNS cord-000248-zueoyesj 1306 54 as as IN cord-000248-zueoyesj 1306 55 a a DT cord-000248-zueoyesj 1306 56 challenge challenge NN cord-000248-zueoyesj 1306 57 for for IN cord-000248-zueoyesj 1306 58 electrostatic electrostatic JJ cord-000248-zueoyesj 1306 59 models model NNS cord-000248-zueoyesj 1306 60 : : : cord-000248-zueoyesj 1307 1 the the DT cord-000248-zueoyesj 1307 2 role role NN cord-000248-zueoyesj 1307 3 of of IN cord-000248-zueoyesj 1307 4 protein protein NN cord-000248-zueoyesj 1307 5 relaxation relaxation NN cord-000248-zueoyesj 1307 6 in in IN cord-000248-zueoyesj 1307 7 mutational mutational JJ cord-000248-zueoyesj 1307 8 calculations calculation NNS cord-000248-zueoyesj 1308 1 The the DT cord-000248-zueoyesj 1308 2 mechanism mechanism NN cord-000248-zueoyesj 1308 3 of of IN cord-000248-zueoyesj 1308 4 proton proton NN cord-000248-zueoyesj 1308 5 exclusion exclusion NN cord-000248-zueoyesj 1308 6 in in IN cord-000248-zueoyesj 1308 7 the the DT cord-000248-zueoyesj 1308 8 aquaporin-1 aquaporin-1 NNP cord-000248-zueoyesj 1308 9 water water NN cord-000248-zueoyesj 1308 10 channel channel NN cord-000248-zueoyesj 1309 1 What what WP cord-000248-zueoyesj 1309 2 really really RB cord-000248-zueoyesj 1309 3 prevents prevent VBZ cord-000248-zueoyesj 1309 4 proton proton NN cord-000248-zueoyesj 1309 5 transport transport NN cord-000248-zueoyesj 1309 6 through through IN cord-000248-zueoyesj 1309 7 aquaporin aquaporin NNP cord-000248-zueoyesj 1309 8 ? ? . cord-000248-zueoyesj 1310 1 Charge charge NN cord-000248-zueoyesj 1310 2 self self NN cord-000248-zueoyesj 1310 3 - - HYPH cord-000248-zueoyesj 1310 4 energy energy NN cord-000248-zueoyesj 1310 5 versus versus IN cord-000248-zueoyesj 1310 6 proton proton NN cord-000248-zueoyesj 1310 7 wire wire NN cord-000248-zueoyesj 1310 8 proposals proposal NNS cord-000248-zueoyesj 1310 9 Control Control NNP cord-000248-zueoyesj 1310 10 of of IN cord-000248-zueoyesj 1310 11 the the DT cord-000248-zueoyesj 1310 12 selectivity selectivity NN cord-000248-zueoyesj 1310 13 of of IN cord-000248-zueoyesj 1310 14 the the DT cord-000248-zueoyesj 1310 15 aquaporin aquaporin NNP cord-000248-zueoyesj 1310 16 water water NNP cord-000248-zueoyesj 1310 17 channel channel NNP cord-000248-zueoyesj 1310 18 family family NN cord-000248-zueoyesj 1310 19 by by IN cord-000248-zueoyesj 1310 20 global global JJ cord-000248-zueoyesj 1310 21 orientational orientational JJ cord-000248-zueoyesj 1310 22 tuning tuning NN cord-000248-zueoyesj 1310 23 The the DT cord-000248-zueoyesj 1310 24 aquaporins aquaporin NNS cord-000248-zueoyesj 1311 1 Aquaporin-1 Aquaporin-1 NNP cord-000248-zueoyesj 1311 2 and and CC cord-000248-zueoyesj 1311 3 HCO3(-)-Cl HCO3(-)-Cl NNP cord-000248-zueoyesj 1311 4 - - HYPH cord-000248-zueoyesj 1311 5 transportermediated transportermediated JJ cord-000248-zueoyesj 1311 6 transport transport NN cord-000248-zueoyesj 1311 7 of of IN cord-000248-zueoyesj 1311 8 CO2 co2 NN cord-000248-zueoyesj 1311 9 across across IN cord-000248-zueoyesj 1311 10 the the DT cord-000248-zueoyesj 1311 11 human human JJ cord-000248-zueoyesj 1311 12 erythrocyte erythrocyte NN cord-000248-zueoyesj 1311 13 membrane membrane NN cord-000248-zueoyesj 1311 14 Ammonia ammonia NN cord-000248-zueoyesj 1311 15 and and CC cord-000248-zueoyesj 1311 16 urea urea NN cord-000248-zueoyesj 1311 17 permeability permeability NN cord-000248-zueoyesj 1311 18 of of IN cord-000248-zueoyesj 1311 19 mammalian mammalian JJ cord-000248-zueoyesj 1311 20 aquaporins aquaporin NNS cord-000248-zueoyesj 1311 21 Expression Expression NNP cord-000248-zueoyesj 1311 22 and and CC cord-000248-zueoyesj 1311 23 function function NN cord-000248-zueoyesj 1311 24 of of IN cord-000248-zueoyesj 1311 25 aquaporins aquaporin NNS cord-000248-zueoyesj 1311 26 in in IN cord-000248-zueoyesj 1311 27 human human JJ cord-000248-zueoyesj 1311 28 skin skin NN cord-000248-zueoyesj 1311 29 : : : cord-000248-zueoyesj 1312 1 Is be VBZ cord-000248-zueoyesj 1312 2 aquaporin-3 aquaporin-3 NN cord-000248-zueoyesj 1312 3 just just RB cord-000248-zueoyesj 1312 4 a a DT cord-000248-zueoyesj 1312 5 glycerol glycerol NN cord-000248-zueoyesj 1312 6 transporter transporter NN cord-000248-zueoyesj 1312 7 Physiological physiological JJ cord-000248-zueoyesj 1312 8 roles role NNS cord-000248-zueoyesj 1312 9 of of IN cord-000248-zueoyesj 1312 10 glyceroltransporting glyceroltransporte VBG cord-000248-zueoyesj 1312 11 aquaporins aquaporin NNS cord-000248-zueoyesj 1312 12 : : : cord-000248-zueoyesj 1312 13 the the DT cord-000248-zueoyesj 1312 14 aquaglyceroporins aquaglyceroporin NNS cord-000248-zueoyesj 1312 15 A a DT cord-000248-zueoyesj 1312 16 role role NN cord-000248-zueoyesj 1312 17 for for IN cord-000248-zueoyesj 1312 18 mitochondrial mitochondrial JJ cord-000248-zueoyesj 1312 19 aquaporins aquaporin NNS cord-000248-zueoyesj 1312 20 in in IN cord-000248-zueoyesj 1312 21 cellular cellular JJ cord-000248-zueoyesj 1312 22 life life NN cord-000248-zueoyesj 1312 23 - - HYPH cord-000248-zueoyesj 1312 24 and and CC cord-000248-zueoyesj 1312 25 - - HYPH cord-000248-zueoyesj 1312 26 death death NN cord-000248-zueoyesj 1312 27 decisions decision NNS cord-000248-zueoyesj 1312 28 ? ? . cord-000248-zueoyesj 1313 1 Functional functional JJ cord-000248-zueoyesj 1313 2 expression expression NN cord-000248-zueoyesj 1313 3 of of IN cord-000248-zueoyesj 1313 4 AQP3 AQP3 NNP cord-000248-zueoyesj 1313 5 in in IN cord-000248-zueoyesj 1313 6 human human JJ cord-000248-zueoyesj 1313 7 skin skin NN cord-000248-zueoyesj 1313 8 epidermis epidermis NN cord-000248-zueoyesj 1313 9 and and CC cord-000248-zueoyesj 1313 10 reconstructed reconstructed JJ cord-000248-zueoyesj 1313 11 epidermis epidermis NN cord-000248-zueoyesj 1313 12 Skin skin NN cord-000248-zueoyesj 1313 13 hydration hydration NN cord-000248-zueoyesj 1313 14 : : : cord-000248-zueoyesj 1313 15 a a DT cord-000248-zueoyesj 1313 16 review review NN cord-000248-zueoyesj 1313 17 on on IN cord-000248-zueoyesj 1313 18 its -PRON- PRP$ cord-000248-zueoyesj 1313 19 molecular molecular JJ cord-000248-zueoyesj 1313 20 mechanisms mechanism NNS cord-000248-zueoyesj 1313 21 Hydrating hydrate VBG cord-000248-zueoyesj 1313 22 skin skin NN cord-000248-zueoyesj 1313 23 by by IN cord-000248-zueoyesj 1313 24 stimulating stimulate VBG cord-000248-zueoyesj 1313 25 biosynthesis biosynthesis NN cord-000248-zueoyesj 1313 26 of of IN cord-000248-zueoyesj 1313 27 aquaporins aquaporin NNS cord-000248-zueoyesj 1313 28 Pores pore NNS cord-000248-zueoyesj 1313 29 in in IN cord-000248-zueoyesj 1313 30 the the DT cord-000248-zueoyesj 1313 31 epidermis epidermis NN cord-000248-zueoyesj 1313 32 : : : cord-000248-zueoyesj 1313 33 aquaporins aquaporin NNS cord-000248-zueoyesj 1313 34 and and CC cord-000248-zueoyesj 1313 35 tight tight JJ cord-000248-zueoyesj 1313 36 junctions junction NNS cord-000248-zueoyesj 1313 37 Biophysical biophysical JJ cord-000248-zueoyesj 1313 38 properties property NNS cord-000248-zueoyesj 1313 39 of of IN cord-000248-zueoyesj 1313 40 epithelial epithelial JJ cord-000248-zueoyesj 1313 41 water water NN cord-000248-zueoyesj 1313 42 channels channel NNS cord-000248-zueoyesj 1314 1 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1314 2 localization localization NN cord-000248-zueoyesj 1314 3 to to IN cord-000248-zueoyesj 1314 4 the the DT cord-000248-zueoyesj 1314 5 telomere telomere NN cord-000248-zueoyesj 1314 6 and and CC cord-000248-zueoyesj 1314 7 its -PRON- PRP$ cord-000248-zueoyesj 1314 8 loss loss NN cord-000248-zueoyesj 1314 9 from from IN cord-000248-zueoyesj 1314 10 the the DT cord-000248-zueoyesj 1314 11 telomere telomere NN cord-000248-zueoyesj 1314 12 in in IN cord-000248-zueoyesj 1314 13 response response NN cord-000248-zueoyesj 1314 14 to to IN cord-000248-zueoyesj 1314 15 DNA dna NN cord-000248-zueoyesj 1314 16 damage damage NN cord-000248-zueoyesj 1314 17 Disruption disruption NN cord-000248-zueoyesj 1314 18 of of IN cord-000248-zueoyesj 1314 19 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1314 20 function function NN cord-000248-zueoyesj 1314 21 results result NNS cord-000248-zueoyesj 1314 22 in in IN cord-000248-zueoyesj 1314 23 telomere telomere NN cord-000248-zueoyesj 1314 24 lengthening lengthening NN cord-000248-zueoyesj 1314 25 and and CC cord-000248-zueoyesj 1314 26 increased increase VBN cord-000248-zueoyesj 1314 27 anaphase anaphase NN cord-000248-zueoyesj 1314 28 bridge bridge NN cord-000248-zueoyesj 1314 29 formation formation NN cord-000248-zueoyesj 1314 30 in in IN cord-000248-zueoyesj 1314 31 immortalized immortalize VBN cord-000248-zueoyesj 1314 32 cell cell NN cord-000248-zueoyesj 1314 33 lines line NNS cord-000248-zueoyesj 1315 1 The the DT cord-000248-zueoyesj 1315 2 role role NN cord-000248-zueoyesj 1315 3 of of IN cord-000248-zueoyesj 1315 4 DNA dna NN cord-000248-zueoyesj 1315 5 damage damage NN cord-000248-zueoyesj 1315 6 response response NN cord-000248-zueoyesj 1315 7 proteins protein NNS cord-000248-zueoyesj 1315 8 at at IN cord-000248-zueoyesj 1315 9 telomeresan telomeresan NNP cord-000248-zueoyesj 1315 10 ' ' '' cord-000248-zueoyesj 1315 11 ' ' `` cord-000248-zueoyesj 1315 12 integrative integrative JJ cord-000248-zueoyesj 1315 13 ' ' '' cord-000248-zueoyesj 1315 14 ' ' '' cord-000248-zueoyesj 1315 15 model model NN cord-000248-zueoyesj 1315 16 Correlating correlate VBG cord-000248-zueoyesj 1315 17 breakage breakage NN cord-000248-zueoyesj 1315 18 - - HYPH cord-000248-zueoyesj 1315 19 fusion fusion NN cord-000248-zueoyesj 1315 20 - - HYPH cord-000248-zueoyesj 1315 21 bridge bridge NN cord-000248-zueoyesj 1315 22 events event NNS cord-000248-zueoyesj 1315 23 with with IN cord-000248-zueoyesj 1315 24 the the DT cord-000248-zueoyesj 1315 25 overall overall JJ cord-000248-zueoyesj 1315 26 chromosomal chromosomal JJ cord-000248-zueoyesj 1315 27 instability instability NN cord-000248-zueoyesj 1315 28 and and CC cord-000248-zueoyesj 1315 29 in in IN cord-000248-zueoyesj 1315 30 vitro vitro FW cord-000248-zueoyesj 1315 31 karyotype karyotype NN cord-000248-zueoyesj 1315 32 evolution evolution NN cord-000248-zueoyesj 1315 33 in in IN cord-000248-zueoyesj 1315 34 prostate prostate NN cord-000248-zueoyesj 1315 35 cancer cancer NN cord-000248-zueoyesj 1315 36 Telomere telomere NN cord-000248-zueoyesj 1315 37 shortening shortening NN cord-000248-zueoyesj 1315 38 is be VBZ cord-000248-zueoyesj 1315 39 an an DT cord-000248-zueoyesj 1315 40 early early JJ cord-000248-zueoyesj 1315 41 somatic somatic JJ cord-000248-zueoyesj 1315 42 DNA dna NN cord-000248-zueoyesj 1315 43 alteration alteration NN cord-000248-zueoyesj 1315 44 in in IN cord-000248-zueoyesj 1315 45 human human JJ cord-000248-zueoyesj 1315 46 prostate prostate NN cord-000248-zueoyesj 1315 47 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1315 48 Role role NN cord-000248-zueoyesj 1315 49 of of IN cord-000248-zueoyesj 1315 50 telomere telomere NN cord-000248-zueoyesj 1315 51 dysfunction dysfunction NN cord-000248-zueoyesj 1315 52 in in IN cord-000248-zueoyesj 1315 53 aging age VBG cord-000248-zueoyesj 1315 54 and and CC cord-000248-zueoyesj 1315 55 its -PRON- PRP$ cord-000248-zueoyesj 1315 56 detection detection NN cord-000248-zueoyesj 1315 57 by by IN cord-000248-zueoyesj 1315 58 biomarkers biomarker NNS cord-000248-zueoyesj 1315 59 Telomere Telomere NNP cord-000248-zueoyesj 1315 60 dysfunction dysfunction NN cord-000248-zueoyesj 1315 61 and and CC cord-000248-zueoyesj 1315 62 tumour tumour NN cord-000248-zueoyesj 1315 63 suppression suppression NN cord-000248-zueoyesj 1315 64 : : : cord-000248-zueoyesj 1315 65 the the DT cord-000248-zueoyesj 1315 66 senescence senescence NN cord-000248-zueoyesj 1315 67 connection connection NN cord-000248-zueoyesj 1316 1 Dual dual JJ cord-000248-zueoyesj 1316 2 roles role NNS cord-000248-zueoyesj 1316 3 of of IN cord-000248-zueoyesj 1316 4 telomere telomere NN cord-000248-zueoyesj 1316 5 dysfunction dysfunction NN cord-000248-zueoyesj 1316 6 in in IN cord-000248-zueoyesj 1316 7 initiation initiation NN cord-000248-zueoyesj 1316 8 and and CC cord-000248-zueoyesj 1316 9 suppression suppression NN cord-000248-zueoyesj 1316 10 of of IN cord-000248-zueoyesj 1316 11 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1316 12 Telomere telomere NN cord-000248-zueoyesj 1316 13 dysfunction dysfunction NN cord-000248-zueoyesj 1316 14 , , , cord-000248-zueoyesj 1316 15 genome genome NN cord-000248-zueoyesj 1316 16 instability instability NN cord-000248-zueoyesj 1316 17 and and CC cord-000248-zueoyesj 1316 18 cancer cancer NN cord-000248-zueoyesj 1316 19 BRCA1 BRCA1 NNP cord-000248-zueoyesj 1316 20 knock knock VB cord-000248-zueoyesj 1316 21 - - HYPH cord-000248-zueoyesj 1316 22 down down RP cord-000248-zueoyesj 1316 23 causes cause NNS cord-000248-zueoyesj 1316 24 telomere telomere NN cord-000248-zueoyesj 1316 25 dysfunction dysfunction NN cord-000248-zueoyesj 1316 26 in in IN cord-000248-zueoyesj 1316 27 mammary mammary JJ cord-000248-zueoyesj 1316 28 epithelial epithelial JJ cord-000248-zueoyesj 1316 29 cells cell NNS cord-000248-zueoyesj 1316 30 Telomere telomere NN cord-000248-zueoyesj 1316 31 dysfunction dysfunction NN cord-000248-zueoyesj 1316 32 in in IN cord-000248-zueoyesj 1316 33 aging aging NN cord-000248-zueoyesj 1316 34 and and CC cord-000248-zueoyesj 1316 35 cancer cancer NN cord-000248-zueoyesj 1316 36 Telomere Telomere NNP cord-000248-zueoyesj 1316 37 dysfunction dysfunction NN cord-000248-zueoyesj 1316 38 increases increase VBZ cord-000248-zueoyesj 1316 39 mutation mutation NN cord-000248-zueoyesj 1316 40 rate rate NN cord-000248-zueoyesj 1316 41 and and CC cord-000248-zueoyesj 1316 42 genomic genomic JJ cord-000248-zueoyesj 1316 43 instability instability NN cord-000248-zueoyesj 1317 1 Telomere telomere NN cord-000248-zueoyesj 1317 2 dysfunction dysfunction NN cord-000248-zueoyesj 1317 3 triggers trigger VBZ cord-000248-zueoyesj 1317 4 extensive extensive JJ cord-000248-zueoyesj 1317 5 DNA dna NN cord-000248-zueoyesj 1317 6 fragmentation fragmentation NN cord-000248-zueoyesj 1317 7 and and CC cord-000248-zueoyesj 1317 8 evolution evolution NN cord-000248-zueoyesj 1317 9 of of IN cord-000248-zueoyesj 1317 10 complex complex JJ cord-000248-zueoyesj 1317 11 chromosome chromosome NN cord-000248-zueoyesj 1317 12 abnormalities abnormality NNS cord-000248-zueoyesj 1317 13 in in IN cord-000248-zueoyesj 1317 14 human human JJ cord-000248-zueoyesj 1317 15 malignant malignant JJ cord-000248-zueoyesj 1317 16 tumors tumor NNS cord-000248-zueoyesj 1317 17 DNA dna NN cord-000248-zueoyesj 1317 18 damage damage NN cord-000248-zueoyesj 1317 19 signalling signalling NN cord-000248-zueoyesj 1317 20 prevents prevent VBZ cord-000248-zueoyesj 1317 21 deleterious deleterious JJ cord-000248-zueoyesj 1317 22 telomere telomere NN cord-000248-zueoyesj 1317 23 addition addition NN cord-000248-zueoyesj 1317 24 at at IN cord-000248-zueoyesj 1317 25 DNA dna NN cord-000248-zueoyesj 1317 26 breaks break NNS cord-000248-zueoyesj 1318 1 The the DT cord-000248-zueoyesj 1318 2 human human JJ cord-000248-zueoyesj 1318 3 Rap1 Rap1 NNP cord-000248-zueoyesj 1318 4 protein protein NN cord-000248-zueoyesj 1318 5 complex complex NN cord-000248-zueoyesj 1318 6 and and CC cord-000248-zueoyesj 1318 7 modulation modulation NN cord-000248-zueoyesj 1318 8 of of IN cord-000248-zueoyesj 1318 9 telomere telomere NN cord-000248-zueoyesj 1318 10 length length NN cord-000248-zueoyesj 1319 1 Small small JJ cord-000248-zueoyesj 1319 2 regulatory regulatory JJ cord-000248-zueoyesj 1319 3 RNAs rna NNS cord-000248-zueoyesj 1319 4 in in IN cord-000248-zueoyesj 1319 5 mammals mammal NNS cord-000248-zueoyesj 1319 6 Implications implication NNS cord-000248-zueoyesj 1319 7 of of IN cord-000248-zueoyesj 1319 8 micro micro JJ cord-000248-zueoyesj 1319 9 - - JJ cord-000248-zueoyesj 1319 10 RNA RNA NNP cord-000248-zueoyesj 1319 11 profiling profiling NN cord-000248-zueoyesj 1319 12 for for IN cord-000248-zueoyesj 1320 1 cancer cancer NN cord-000248-zueoyesj 1320 2 diagnosis diagnosis NN cord-000248-zueoyesj 1320 3 miRNAs miRNAs NNP cord-000248-zueoyesj 1320 4 : : : cord-000248-zueoyesj 1320 5 Little little JJ cord-000248-zueoyesj 1320 6 known know VBN cord-000248-zueoyesj 1320 7 mediators mediator NNS cord-000248-zueoyesj 1320 8 of of IN cord-000248-zueoyesj 1320 9 oncogenesis oncogenesis NNP cord-000248-zueoyesj 1320 10 Regulation Regulation NNP cord-000248-zueoyesj 1320 11 of of IN cord-000248-zueoyesj 1320 12 epidermal epidermal JJ cord-000248-zueoyesj 1320 13 growth growth NN cord-000248-zueoyesj 1320 14 factor factor NN cord-000248-zueoyesj 1320 15 receptor receptor NN cord-000248-zueoyesj 1320 16 signaling signal VBG cord-000248-zueoyesj 1320 17 in in IN cord-000248-zueoyesj 1320 18 human human JJ cord-000248-zueoyesj 1320 19 cancer cancer NN cord-000248-zueoyesj 1320 20 cells cell NNS cord-000248-zueoyesj 1320 21 by by IN cord-000248-zueoyesj 1320 22 microRNA-7 microRNA-7 NNP cord-000248-zueoyesj 1320 23 MicroRNAs MicroRNAs NNP cord-000248-zueoyesj 1320 24 and and CC cord-000248-zueoyesj 1320 25 their -PRON- PRP$ cord-000248-zueoyesj 1320 26 potential potential NN cord-000248-zueoyesj 1320 27 for for IN cord-000248-zueoyesj 1320 28 translation translation NN cord-000248-zueoyesj 1320 29 in in IN cord-000248-zueoyesj 1320 30 prostate prostate NN cord-000248-zueoyesj 1320 31 cancer cancer NN cord-000248-zueoyesj 1320 32 MicroRNA MicroRNA NNP cord-000248-zueoyesj 1320 33 expression expression NN cord-000248-zueoyesj 1320 34 profiling profile VBG cord-000248-zueoyesj 1320 35 in in IN cord-000248-zueoyesj 1320 36 prostate prostate NN cord-000248-zueoyesj 1320 37 cancer cancer NN cord-000248-zueoyesj 1320 38 Clusters cluster NNS cord-000248-zueoyesj 1320 39 of of IN cord-000248-zueoyesj 1321 1 internally internally RB cord-000248-zueoyesj 1321 2 primed prime VBN cord-000248-zueoyesj 1321 3 transcripts transcript NNS cord-000248-zueoyesj 1321 4 reveal reveal VBP cord-000248-zueoyesj 1321 5 novel novel JJ cord-000248-zueoyesj 1321 6 long long JJ cord-000248-zueoyesj 1321 7 noncoding noncoding JJ cord-000248-zueoyesj 1321 8 RNAs rna NNS cord-000248-zueoyesj 1321 9 Long long RB cord-000248-zueoyesj 1321 10 , , , cord-000248-zueoyesj 1321 11 abundantly abundantly RB cord-000248-zueoyesj 1321 12 expressed express VBN cord-000248-zueoyesj 1321 13 non non JJ cord-000248-zueoyesj 1321 14 - - JJ cord-000248-zueoyesj 1321 15 coding coding JJ cord-000248-zueoyesj 1321 16 transcripts transcript NNS cord-000248-zueoyesj 1321 17 are be VBP cord-000248-zueoyesj 1321 18 altered alter VBN cord-000248-zueoyesj 1321 19 in in IN cord-000248-zueoyesj 1321 20 cancer cancer NN cord-000248-zueoyesj 1321 21 Long long JJ cord-000248-zueoyesj 1321 22 non non JJ cord-000248-zueoyesj 1321 23 - - JJ cord-000248-zueoyesj 1321 24 coding coding JJ cord-000248-zueoyesj 1321 25 RNAs rna NNS cord-000248-zueoyesj 1321 26 : : : cord-000248-zueoyesj 1321 27 insights insight NNS cord-000248-zueoyesj 1321 28 into into IN cord-000248-zueoyesj 1321 29 functions function NNS cord-000248-zueoyesj 1321 30 RNA RNA NNP cord-000248-zueoyesj 1321 31 regulation regulation NN cord-000248-zueoyesj 1321 32 of of IN cord-000248-zueoyesj 1321 33 epigenetic epigenetic JJ cord-000248-zueoyesj 1321 34 processes process NNS cord-000248-zueoyesj 1322 1 The the DT cord-000248-zueoyesj 1322 2 genetic genetic JJ cord-000248-zueoyesj 1322 3 signatures signature NNS cord-000248-zueoyesj 1322 4 of of IN cord-000248-zueoyesj 1322 5 noncoding noncoding JJ cord-000248-zueoyesj 1322 6 RNAs rna NNS cord-000248-zueoyesj 1322 7 39 39 CD cord-000248-zueoyesj 1322 8 end end NN cord-000248-zueoyesj 1322 9 processing processing NN cord-000248-zueoyesj 1322 10 of of IN cord-000248-zueoyesj 1322 11 a a DT cord-000248-zueoyesj 1322 12 long long JJ cord-000248-zueoyesj 1322 13 nuclearretained nuclearretained JJ cord-000248-zueoyesj 1322 14 noncoding noncoding NNP cord-000248-zueoyesj 1322 15 RNA RNA NNP cord-000248-zueoyesj 1322 16 yields yield VBZ cord-000248-zueoyesj 1322 17 a a DT cord-000248-zueoyesj 1322 18 tRNA trna NN cord-000248-zueoyesj 1322 19 - - HYPH cord-000248-zueoyesj 1322 20 like like JJ cord-000248-zueoyesj 1322 21 cytoplasmic cytoplasmic JJ cord-000248-zueoyesj 1322 22 RNA RNA NNP cord-000248-zueoyesj 1322 23 DNA dna NN cord-000248-zueoyesj 1322 24 sequence sequence NN cord-000248-zueoyesj 1322 25 of of IN cord-000248-zueoyesj 1322 26 the the DT cord-000248-zueoyesj 1322 27 translocation translocation NN cord-000248-zueoyesj 1322 28 breakpoints breakpoint NNS cord-000248-zueoyesj 1322 29 in in IN cord-000248-zueoyesj 1322 30 undifferentiated undifferentiated JJ cord-000248-zueoyesj 1322 31 embryonal embryonal JJ cord-000248-zueoyesj 1322 32 sarcoma sarcoma NN cord-000248-zueoyesj 1322 33 arising arise VBG cord-000248-zueoyesj 1322 34 in in IN cord-000248-zueoyesj 1322 35 mesenchymal mesenchymal JJ cord-000248-zueoyesj 1322 36 hamartoma hamartoma NN cord-000248-zueoyesj 1322 37 of of IN cord-000248-zueoyesj 1322 38 the the DT cord-000248-zueoyesj 1322 39 liver liver NN cord-000248-zueoyesj 1322 40 harboring harbor VBG cord-000248-zueoyesj 1322 41 the the DT cord-000248-zueoyesj 1322 42 t(11;19)(q11;q13.4 t(11;19)(q11;q13.4 NNP cord-000248-zueoyesj 1322 43 ) ) -RRB- cord-000248-zueoyesj 1322 44 translocation translocation NN cord-000248-zueoyesj 1322 45 Transcriptomic Transcriptomic NNP cord-000248-zueoyesj 1322 46 and and CC cord-000248-zueoyesj 1322 47 genomic genomic JJ cord-000248-zueoyesj 1322 48 analysis analysis NN cord-000248-zueoyesj 1322 49 of of IN cord-000248-zueoyesj 1322 50 human human JJ cord-000248-zueoyesj 1322 51 hepatocellular hepatocellular JJ cord-000248-zueoyesj 1322 52 carcinomas carcinoma NNS cord-000248-zueoyesj 1322 53 and and CC cord-000248-zueoyesj 1322 54 hepatoblastomas hepatoblastomas NNP cord-000248-zueoyesj 1322 55 A a DT cord-000248-zueoyesj 1322 56 transcriptional transcriptional JJ cord-000248-zueoyesj 1322 57 sketch sketch NN cord-000248-zueoyesj 1322 58 of of IN cord-000248-zueoyesj 1322 59 a a DT cord-000248-zueoyesj 1322 60 primary primary JJ cord-000248-zueoyesj 1322 61 human human JJ cord-000248-zueoyesj 1322 62 breast breast NN cord-000248-zueoyesj 1322 63 cancer cancer NN cord-000248-zueoyesj 1322 64 by by IN cord-000248-zueoyesj 1322 65 454 454 CD cord-000248-zueoyesj 1322 66 deep deep JJ cord-000248-zueoyesj 1322 67 sequencing sequencing NN cord-000248-zueoyesj 1322 68 Metastasis metastasis NN cord-000248-zueoyesj 1322 69 associated associate VBD cord-000248-zueoyesj 1322 70 lung lung NN cord-000248-zueoyesj 1322 71 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1322 72 transcript transcript NN cord-000248-zueoyesj 1322 73 1 1 CD cord-000248-zueoyesj 1322 74 ( ( -LRB- cord-000248-zueoyesj 1322 75 MALAT-1 MALAT-1 NNP cord-000248-zueoyesj 1322 76 ) ) -RRB- cord-000248-zueoyesj 1323 1 is be VBZ cord-000248-zueoyesj 1323 2 up up RB cord-000248-zueoyesj 1323 3 - - HYPH cord-000248-zueoyesj 1323 4 regulated regulate VBN cord-000248-zueoyesj 1323 5 in in IN cord-000248-zueoyesj 1323 6 placenta placenta NN cord-000248-zueoyesj 1323 7 previa previa NN cord-000248-zueoyesj 1323 8 increta increta JJ cord-000248-zueoyesj 1323 9 / / SYM cord-000248-zueoyesj 1323 10 percreta percreta NN cord-000248-zueoyesj 1323 11 and and CC cord-000248-zueoyesj 1323 12 strongly strongly RB cord-000248-zueoyesj 1323 13 associated associate VBN cord-000248-zueoyesj 1323 14 with with IN cord-000248-zueoyesj 1323 15 trophoblast trophoblast NN cord-000248-zueoyesj 1323 16 - - HYPH cord-000248-zueoyesj 1323 17 like like JJ cord-000248-zueoyesj 1323 18 cell cell NN cord-000248-zueoyesj 1323 19 invasion invasion NN cord-000248-zueoyesj 1323 20 in in IN cord-000248-zueoyesj 1323 21 vitro vitro FW cord-000248-zueoyesj 1324 1 Elucidating elucidate VBG cord-000248-zueoyesj 1324 2 the the DT cord-000248-zueoyesj 1324 3 molecular molecular JJ cord-000248-zueoyesj 1324 4 physiopathology physiopathology NN cord-000248-zueoyesj 1324 5 of of IN cord-000248-zueoyesj 1324 6 acute acute JJ cord-000248-zueoyesj 1324 7 respiratory respiratory JJ cord-000248-zueoyesj 1324 8 distress distress NN cord-000248-zueoyesj 1324 9 syndrome syndrome NN cord-000248-zueoyesj 1324 10 in in IN cord-000248-zueoyesj 1324 11 severe severe JJ cord-000248-zueoyesj 1324 12 acute acute JJ cord-000248-zueoyesj 1324 13 respiratory respiratory JJ cord-000248-zueoyesj 1324 14 syndrome syndrome NN cord-000248-zueoyesj 1324 15 patients patient VBZ cord-000248-zueoyesj 1324 16 Expression Expression NNP cord-000248-zueoyesj 1324 17 profile profile NN cord-000248-zueoyesj 1324 18 of of IN cord-000248-zueoyesj 1324 19 microRNAs microRNAs NNPS cord-000248-zueoyesj 1324 20 in in IN cord-000248-zueoyesj 1324 21 c c NNP cord-000248-zueoyesj 1324 22 - - HYPH cord-000248-zueoyesj 1324 23 Myc Myc NNP cord-000248-zueoyesj 1325 1 induced induce VBN cord-000248-zueoyesj 1325 2 mouse mouse NN cord-000248-zueoyesj 1325 3 mammary mammary JJ cord-000248-zueoyesj 1325 4 tumors tumor NNS cord-000248-zueoyesj 1325 5 Prognostic prognostic JJ cord-000248-zueoyesj 1325 6 significance significance NN cord-000248-zueoyesj 1325 7 of of IN cord-000248-zueoyesj 1325 8 drug drug NN cord-000248-zueoyesj 1325 9 - - HYPH cord-000248-zueoyesj 1325 10 regulated regulate VBN cord-000248-zueoyesj 1325 11 genes gene NNS cord-000248-zueoyesj 1325 12 in in IN cord-000248-zueoyesj 1325 13 high high JJ cord-000248-zueoyesj 1325 14 - - HYPH cord-000248-zueoyesj 1325 15 grade grade NN cord-000248-zueoyesj 1325 16 osteosarcoma osteosarcoma NN cord-000248-zueoyesj 1326 1 A a DT cord-000248-zueoyesj 1326 2 screen screen NN cord-000248-zueoyesj 1326 3 for for IN cord-000248-zueoyesj 1326 4 nuclear nuclear JJ cord-000248-zueoyesj 1326 5 transcripts transcript NNS cord-000248-zueoyesj 1326 6 identifies identify VBZ cord-000248-zueoyesj 1326 7 two two CD cord-000248-zueoyesj 1326 8 linked link VBN cord-000248-zueoyesj 1326 9 noncoding noncoding JJ cord-000248-zueoyesj 1326 10 RNAs rna NNS cord-000248-zueoyesj 1326 11 associated associate VBN cord-000248-zueoyesj 1326 12 with with IN cord-000248-zueoyesj 1326 13 SC35 SC35 NNP cord-000248-zueoyesj 1326 14 splicing splicing NN cord-000248-zueoyesj 1326 15 domains domain NNS cord-000248-zueoyesj 1327 1 A a DT cord-000248-zueoyesj 1327 2 large large JJ cord-000248-zueoyesj 1327 3 noncoding noncoding JJ cord-000248-zueoyesj 1327 4 RNA RNA NNP cord-000248-zueoyesj 1327 5 is be VBZ cord-000248-zueoyesj 1327 6 a a DT cord-000248-zueoyesj 1327 7 marker marker NN cord-000248-zueoyesj 1327 8 for for IN cord-000248-zueoyesj 1327 9 murine murine JJ cord-000248-zueoyesj 1327 10 hepatocellular hepatocellular JJ cord-000248-zueoyesj 1327 11 carcinomas carcinoma NNS cord-000248-zueoyesj 1327 12 and and CC cord-000248-zueoyesj 1327 13 a a DT cord-000248-zueoyesj 1327 14 spectrum spectrum NN cord-000248-zueoyesj 1327 15 of of IN cord-000248-zueoyesj 1327 16 human human JJ cord-000248-zueoyesj 1327 17 carcinomas carcinoma NNS cord-000248-zueoyesj 1327 18 Phenotypic phenotypic JJ cord-000248-zueoyesj 1327 19 characterization characterization NN cord-000248-zueoyesj 1327 20 of of IN cord-000248-zueoyesj 1327 21 endometrial endometrial JJ cord-000248-zueoyesj 1327 22 stromal stromal JJ cord-000248-zueoyesj 1327 23 sarcoma sarcoma NN cord-000248-zueoyesj 1327 24 of of IN cord-000248-zueoyesj 1327 25 the the DT cord-000248-zueoyesj 1327 26 uterus uterus NN cord-000248-zueoyesj 1327 27 Genome genome NN cord-000248-zueoyesj 1327 28 - - HYPH cord-000248-zueoyesj 1327 29 wide wide JJ cord-000248-zueoyesj 1327 30 screening screening NN cord-000248-zueoyesj 1327 31 for for IN cord-000248-zueoyesj 1327 32 prognosis prognosis NN cord-000248-zueoyesj 1327 33 - - HYPH cord-000248-zueoyesj 1327 34 predicting predict VBG cord-000248-zueoyesj 1327 35 genes gene NNS cord-000248-zueoyesj 1327 36 in in IN cord-000248-zueoyesj 1327 37 early early JJ cord-000248-zueoyesj 1327 38 - - HYPH cord-000248-zueoyesj 1327 39 stage stage NN cord-000248-zueoyesj 1327 40 non non JJ cord-000248-zueoyesj 1327 41 - - JJ cord-000248-zueoyesj 1327 42 small small JJ cord-000248-zueoyesj 1327 43 - - HYPH cord-000248-zueoyesj 1327 44 cell cell NN cord-000248-zueoyesj 1327 45 lung lung NN cord-000248-zueoyesj 1327 46 cancer cancer NN cord-000248-zueoyesj 1327 47 MALAT-1 MALAT-1 NNP cord-000248-zueoyesj 1327 48 , , , cord-000248-zueoyesj 1327 49 a a DT cord-000248-zueoyesj 1327 50 novel novel NN cord-000248-zueoyesj 1327 51 noncoding noncoding NNP cord-000248-zueoyesj 1327 52 RNA RNA NNP cord-000248-zueoyesj 1327 53 , , , cord-000248-zueoyesj 1327 54 and and CC cord-000248-zueoyesj 1327 55 thymosin thymosin NN cord-000248-zueoyesj 1327 56 beta4 beta4 NN cord-000248-zueoyesj 1327 57 predict predict VBP cord-000248-zueoyesj 1327 58 metastasis metastasis NN cord-000248-zueoyesj 1327 59 and and CC cord-000248-zueoyesj 1327 60 survival survival NN cord-000248-zueoyesj 1327 61 in in IN cord-000248-zueoyesj 1327 62 early early JJ cord-000248-zueoyesj 1327 63 - - HYPH cord-000248-zueoyesj 1327 64 stage stage NN cord-000248-zueoyesj 1327 65 non non JJ cord-000248-zueoyesj 1327 66 - - JJ cord-000248-zueoyesj 1327 67 small small JJ cord-000248-zueoyesj 1327 68 cell cell NN cord-000248-zueoyesj 1327 69 lung lung NN cord-000248-zueoyesj 1327 70 cancer cancer NN cord-000248-zueoyesj 1328 1 The the DT cord-000248-zueoyesj 1328 2 interaction interaction NN cord-000248-zueoyesj 1328 3 profile profile NN cord-000248-zueoyesj 1328 4 of of IN cord-000248-zueoyesj 1328 5 homologous homologous JJ cord-000248-zueoyesj 1328 6 recombination recombination NN cord-000248-zueoyesj 1328 7 repair repair NN cord-000248-zueoyesj 1328 8 proteins protein NNS cord-000248-zueoyesj 1328 9 RAD51C RAD51C NNS cord-000248-zueoyesj 1328 10 , , , cord-000248-zueoyesj 1328 11 RAD51D RAD51D NNP cord-000248-zueoyesj 1328 12 and and CC cord-000248-zueoyesj 1328 13 XRCC2 XRCC2 NNP cord-000248-zueoyesj 1328 14 as as IN cord-000248-zueoyesj 1328 15 determined determine VBN cord-000248-zueoyesj 1328 16 by by IN cord-000248-zueoyesj 1328 17 proteomic proteomic JJ cord-000248-zueoyesj 1328 18 analysis analysis NN cord-000248-zueoyesj 1328 19 Paraspeckles Paraspeckles NNP cord-000248-zueoyesj 1328 20 : : : cord-000248-zueoyesj 1328 21 nuclear nuclear JJ cord-000248-zueoyesj 1328 22 bodies body NNS cord-000248-zueoyesj 1328 23 built build VBN cord-000248-zueoyesj 1328 24 on on IN cord-000248-zueoyesj 1328 25 long long JJ cord-000248-zueoyesj 1328 26 noncoding noncoding JJ cord-000248-zueoyesj 1328 27 RNA RNA NNP cord-000248-zueoyesj 1328 28 hnRNP hnrnp NN cord-000248-zueoyesj 1328 29 M M NNP cord-000248-zueoyesj 1328 30 interacts interact VBZ cord-000248-zueoyesj 1328 31 with with IN cord-000248-zueoyesj 1328 32 PSF PSF NNP cord-000248-zueoyesj 1328 33 and and CC cord-000248-zueoyesj 1328 34 p54(nrb p54(nrb NNP cord-000248-zueoyesj 1328 35 ) ) -RRB- cord-000248-zueoyesj 1328 36 and and CC cord-000248-zueoyesj 1328 37 co co NNS cord-000248-zueoyesj 1328 38 - - NN cord-000248-zueoyesj 1328 39 localizes localizes RB cord-000248-zueoyesj 1329 1 within within IN cord-000248-zueoyesj 1329 2 defined define VBN cord-000248-zueoyesj 1329 3 nuclear nuclear JJ cord-000248-zueoyesj 1329 4 structures structure NNS cord-000248-zueoyesj 1329 5 Altered alter VBD cord-000248-zueoyesj 1329 6 nuclear nuclear JJ cord-000248-zueoyesj 1329 7 retention retention NN cord-000248-zueoyesj 1329 8 of of IN cord-000248-zueoyesj 1329 9 mRNAs mRNAs NNPS cord-000248-zueoyesj 1329 10 containing contain VBG cord-000248-zueoyesj 1329 11 inverted invert VBN cord-000248-zueoyesj 1329 12 repeats repeat NNS cord-000248-zueoyesj 1329 13 in in IN cord-000248-zueoyesj 1329 14 human human JJ cord-000248-zueoyesj 1329 15 embryonic embryonic JJ cord-000248-zueoyesj 1329 16 stem stem NN cord-000248-zueoyesj 1329 17 cells cell NNS cord-000248-zueoyesj 1329 18 : : : cord-000248-zueoyesj 1329 19 functional functional JJ cord-000248-zueoyesj 1329 20 role role NN cord-000248-zueoyesj 1329 21 of of IN cord-000248-zueoyesj 1329 22 a a DT cord-000248-zueoyesj 1329 23 nuclear nuclear JJ cord-000248-zueoyesj 1329 24 noncoding noncoding JJ cord-000248-zueoyesj 1329 25 RNA RNA NNP cord-000248-zueoyesj 1329 26 How how WRB cord-000248-zueoyesj 1329 27 to to TO cord-000248-zueoyesj 1329 28 build build VB cord-000248-zueoyesj 1329 29 a a DT cord-000248-zueoyesj 1329 30 paraspeckle paraspeckle NN cord-000248-zueoyesj 1329 31 An an DT cord-000248-zueoyesj 1329 32 architectural architectural JJ cord-000248-zueoyesj 1329 33 role role NN cord-000248-zueoyesj 1329 34 for for IN cord-000248-zueoyesj 1329 35 a a DT cord-000248-zueoyesj 1329 36 nuclear nuclear JJ cord-000248-zueoyesj 1329 37 noncoding noncoding JJ cord-000248-zueoyesj 1329 38 RNA rna NN cord-000248-zueoyesj 1329 39 : : : cord-000248-zueoyesj 1330 1 NEAT1 NEAT1 NNP cord-000248-zueoyesj 1331 1 RNA RNA NNP cord-000248-zueoyesj 1331 2 is be VBZ cord-000248-zueoyesj 1331 3 essential essential JJ cord-000248-zueoyesj 1331 4 for for IN cord-000248-zueoyesj 1331 5 the the DT cord-000248-zueoyesj 1331 6 structure structure NN cord-000248-zueoyesj 1331 7 of of IN cord-000248-zueoyesj 1331 8 paraspeckles paraspeckles NNP cord-000248-zueoyesj 1331 9 MENepsilon/ MENepsilon/ NNP cord-000248-zueoyesj 1332 1 beta beta JJ cord-000248-zueoyesj 1332 2 noncoding noncoding JJ cord-000248-zueoyesj 1332 3 RNAs rna NNS cord-000248-zueoyesj 1332 4 are be VBP cord-000248-zueoyesj 1332 5 essential essential JJ cord-000248-zueoyesj 1332 6 for for IN cord-000248-zueoyesj 1332 7 structural structural JJ cord-000248-zueoyesj 1332 8 integrity integrity NN cord-000248-zueoyesj 1332 9 of of IN cord-000248-zueoyesj 1332 10 nuclear nuclear JJ cord-000248-zueoyesj 1332 11 paraspeckles paraspeckle NNS cord-000248-zueoyesj 1332 12 MEN men NN cord-000248-zueoyesj 1332 13 epsilon epsilon NN cord-000248-zueoyesj 1332 14 / / SYM cord-000248-zueoyesj 1332 15 beta beta NN cord-000248-zueoyesj 1332 16 nuclear nuclear NN cord-000248-zueoyesj 1332 17 - - HYPH cord-000248-zueoyesj 1332 18 retained retain VBN cord-000248-zueoyesj 1332 19 non non JJ cord-000248-zueoyesj 1332 20 - - JJ cord-000248-zueoyesj 1332 21 coding coding JJ cord-000248-zueoyesj 1332 22 RNAs rna NNS cord-000248-zueoyesj 1332 23 are be VBP cord-000248-zueoyesj 1332 24 up up RB cord-000248-zueoyesj 1332 25 - - HYPH cord-000248-zueoyesj 1332 26 regulated regulate VBN cord-000248-zueoyesj 1332 27 upon upon IN cord-000248-zueoyesj 1332 28 muscle muscle NN cord-000248-zueoyesj 1332 29 differentiation differentiation NN cord-000248-zueoyesj 1332 30 and and CC cord-000248-zueoyesj 1332 31 are be VBP cord-000248-zueoyesj 1332 32 essential essential JJ cord-000248-zueoyesj 1332 33 components component NNS cord-000248-zueoyesj 1332 34 of of IN cord-000248-zueoyesj 1332 35 paraspeckles paraspeckles NNP cord-000248-zueoyesj 1332 36 nuclear nuclear JJ cord-000248-zueoyesj 1332 37 domains domain NNS cord-000248-zueoyesj 1332 38 : : : cord-000248-zueoyesj 1332 39 characterization characterization NN cord-000248-zueoyesj 1332 40 and and CC cord-000248-zueoyesj 1332 41 dynamics dynamic NNS cord-000248-zueoyesj 1332 42 as as IN cord-000248-zueoyesj 1332 43 a a DT cord-000248-zueoyesj 1332 44 function function NN cord-000248-zueoyesj 1332 45 of of IN cord-000248-zueoyesj 1332 46 transcriptional transcriptional JJ cord-000248-zueoyesj 1332 47 activity activity NN cord-000248-zueoyesj 1332 48 Subnuclear Subnuclear NNP cord-000248-zueoyesj 1332 49 localization localization NN cord-000248-zueoyesj 1332 50 and and CC cord-000248-zueoyesj 1332 51 dynamics dynamic NNS cord-000248-zueoyesj 1332 52 of of IN cord-000248-zueoyesj 1332 53 the the DT cord-000248-zueoyesj 1332 54 Pre Pre NNP cord-000248-zueoyesj 1332 55 - - NNP cord-000248-zueoyesj 1332 56 mRNA mRNA NNP cord-000248-zueoyesj 1332 57 39 39 CD cord-000248-zueoyesj 1332 58 end end NN cord-000248-zueoyesj 1332 59 processing processing NN cord-000248-zueoyesj 1332 60 factor factor NN cord-000248-zueoyesj 1332 61 mammalian mammalian JJ cord-000248-zueoyesj 1332 62 cleavage cleavage NN cord-000248-zueoyesj 1332 63 factor factor NN cord-000248-zueoyesj 1333 1 I -PRON- PRP cord-000248-zueoyesj 1333 2 68-kDa 68-kda CD cord-000248-zueoyesj 1333 3 subunit subunit NN cord-000248-zueoyesj 1333 4 Functional functional JJ cord-000248-zueoyesj 1333 5 studies study NNS cord-000248-zueoyesj 1333 6 of of IN cord-000248-zueoyesj 1333 7 BCL11A bcl11a NN cord-000248-zueoyesj 1333 8 : : : cord-000248-zueoyesj 1333 9 characterization characterization NN cord-000248-zueoyesj 1333 10 of of IN cord-000248-zueoyesj 1333 11 the the DT cord-000248-zueoyesj 1333 12 conserved conserve VBN cord-000248-zueoyesj 1333 13 BCL11A bcl11a NN cord-000248-zueoyesj 1333 14 - - HYPH cord-000248-zueoyesj 1333 15 XL xl NN cord-000248-zueoyesj 1333 16 splice splice NN cord-000248-zueoyesj 1333 17 variant variant NN cord-000248-zueoyesj 1333 18 and and CC cord-000248-zueoyesj 1333 19 its -PRON- PRP$ cord-000248-zueoyesj 1333 20 interaction interaction NN cord-000248-zueoyesj 1333 21 with with IN cord-000248-zueoyesj 1333 22 BCL6 BCL6 NNP cord-000248-zueoyesj 1333 23 in in IN cord-000248-zueoyesj 1333 24 nuclear nuclear JJ cord-000248-zueoyesj 1333 25 paraspeckles paraspeckle NNS cord-000248-zueoyesj 1333 26 of of IN cord-000248-zueoyesj 1333 27 germinal germinal JJ cord-000248-zueoyesj 1333 28 center center NN cord-000248-zueoyesj 1333 29 B B NNP cord-000248-zueoyesj 1333 30 cells cell NNS cord-000248-zueoyesj 1334 1 Nucleocytoplasmic Nucleocytoplasmic NNP cord-000248-zueoyesj 1334 2 transport transport NN cord-000248-zueoyesj 1334 3 of of IN cord-000248-zueoyesj 1334 4 fluorescent fluorescent NN cord-000248-zueoyesj 1334 5 mRNA mrna NN cord-000248-zueoyesj 1334 6 in in IN cord-000248-zueoyesj 1334 7 living live VBG cord-000248-zueoyesj 1334 8 mammalian mammalian JJ cord-000248-zueoyesj 1334 9 cells cell NNS cord-000248-zueoyesj 1334 10 : : : cord-000248-zueoyesj 1335 1 nuclear nuclear JJ cord-000248-zueoyesj 1335 2 mRNA mRNA NNP cord-000248-zueoyesj 1335 3 export export NN cord-000248-zueoyesj 1335 4 is be VBZ cord-000248-zueoyesj 1335 5 coupled couple VBN cord-000248-zueoyesj 1335 6 to to IN cord-000248-zueoyesj 1335 7 ongoing ongoing JJ cord-000248-zueoyesj 1335 8 gene gene NN cord-000248-zueoyesj 1335 9 transcription transcription NN cord-000248-zueoyesj 1335 10 Splicing splicing NN cord-000248-zueoyesj 1335 11 speckles speckle NNS cord-000248-zueoyesj 1335 12 are be VBP cord-000248-zueoyesj 1335 13 not not RB cord-000248-zueoyesj 1335 14 reservoirs reservoir NNS cord-000248-zueoyesj 1335 15 of of IN cord-000248-zueoyesj 1335 16 RNA RNA NNP cord-000248-zueoyesj 1335 17 polymerase polymerase NN cord-000248-zueoyesj 1335 18 II II NNP cord-000248-zueoyesj 1335 19 , , , cord-000248-zueoyesj 1335 20 but but CC cord-000248-zueoyesj 1335 21 contain contain VBP cord-000248-zueoyesj 1335 22 an an DT cord-000248-zueoyesj 1335 23 inactive inactive JJ cord-000248-zueoyesj 1335 24 form form NN cord-000248-zueoyesj 1335 25 , , , cord-000248-zueoyesj 1335 26 phosphorylated phosphorylate VBN cord-000248-zueoyesj 1335 27 on on IN cord-000248-zueoyesj 1335 28 serine2 serine2 JJ cord-000248-zueoyesj 1335 29 residues residue NNS cord-000248-zueoyesj 1335 30 of of IN cord-000248-zueoyesj 1335 31 the the DT cord-000248-zueoyesj 1335 32 C C NNP cord-000248-zueoyesj 1335 33 - - HYPH cord-000248-zueoyesj 1335 34 terminal terminal NN cord-000248-zueoyesj 1335 35 domain domain NN cord-000248-zueoyesj 1335 36 Regulating regulate VBG cord-000248-zueoyesj 1335 37 gene gene NN cord-000248-zueoyesj 1335 38 expression expression NN cord-000248-zueoyesj 1335 39 through through IN cord-000248-zueoyesj 1335 40 RNA RNA NNP cord-000248-zueoyesj 1335 41 nuclear nuclear JJ cord-000248-zueoyesj 1335 42 retention retention NN cord-000248-zueoyesj 1335 43 P54nrb P54nrb NNP cord-000248-zueoyesj 1335 44 forms form VBZ cord-000248-zueoyesj 1335 45 a a DT cord-000248-zueoyesj 1335 46 heterodimer heterodimer NN cord-000248-zueoyesj 1335 47 with with IN cord-000248-zueoyesj 1335 48 PSP1 PSP1 NNP cord-000248-zueoyesj 1335 49 that that WDT cord-000248-zueoyesj 1335 50 localizes localize VBZ cord-000248-zueoyesj 1335 51 to to IN cord-000248-zueoyesj 1335 52 paraspeckles paraspeckle NNS cord-000248-zueoyesj 1335 53 in in IN cord-000248-zueoyesj 1335 54 an an DT cord-000248-zueoyesj 1335 55 RNA RNA NNP cord-000248-zueoyesj 1335 56 - - HYPH cord-000248-zueoyesj 1335 57 dependent dependent JJ cord-000248-zueoyesj 1335 58 manner manner NN cord-000248-zueoyesj 1335 59 Dynamics dynamic NNS cord-000248-zueoyesj 1335 60 of of IN cord-000248-zueoyesj 1335 61 the the DT cord-000248-zueoyesj 1335 62 mammalian mammalian JJ cord-000248-zueoyesj 1335 63 nucleus nucleus NN cord-000248-zueoyesj 1335 64 : : : cord-000248-zueoyesj 1335 65 can can MD cord-000248-zueoyesj 1335 66 microscopic microscopic JJ cord-000248-zueoyesj 1335 67 movements movement NNS cord-000248-zueoyesj 1335 68 help help VB cord-000248-zueoyesj 1335 69 us -PRON- PRP cord-000248-zueoyesj 1335 70 to to TO cord-000248-zueoyesj 1335 71 understand understand VB cord-000248-zueoyesj 1335 72 our -PRON- PRP$ cord-000248-zueoyesj 1335 73 genes gene NNS cord-000248-zueoyesj 1335 74 ? ? . cord-000248-zueoyesj 1336 1 Distinct distinct JJ cord-000248-zueoyesj 1336 2 sequence sequence NN cord-000248-zueoyesj 1336 3 motifs motif NNS cord-000248-zueoyesj 1336 4 within within IN cord-000248-zueoyesj 1336 5 the the DT cord-000248-zueoyesj 1336 6 68-kDa 68-kda CD cord-000248-zueoyesj 1336 7 subunit subunit NN cord-000248-zueoyesj 1336 8 of of IN cord-000248-zueoyesj 1336 9 cleavage cleavage NN cord-000248-zueoyesj 1336 10 factor factor NN cord-000248-zueoyesj 1337 1 I -PRON- PRP cord-000248-zueoyesj 1337 2 m be VBP cord-000248-zueoyesj 1337 3 mediate mediate NNP cord-000248-zueoyesj 1337 4 RNA RNA NNP cord-000248-zueoyesj 1337 5 binding binding NN cord-000248-zueoyesj 1337 6 , , , cord-000248-zueoyesj 1337 7 protein protein NN cord-000248-zueoyesj 1337 8 - - HYPH cord-000248-zueoyesj 1337 9 protein protein NN cord-000248-zueoyesj 1337 10 interactions interaction NNS cord-000248-zueoyesj 1337 11 , , , cord-000248-zueoyesj 1337 12 and and CC cord-000248-zueoyesj 1337 13 subcellular subcellular JJ cord-000248-zueoyesj 1337 14 localization localization NN cord-000248-zueoyesj 1337 15 Nucleolomics Nucleolomics NNPS cord-000248-zueoyesj 1337 16 : : : cord-000248-zueoyesj 1337 17 an an DT cord-000248-zueoyesj 1337 18 inventory inventory NN cord-000248-zueoyesj 1337 19 of of IN cord-000248-zueoyesj 1337 20 the the DT cord-000248-zueoyesj 1337 21 nucleolus nucleolus NN cord-000248-zueoyesj 1337 22 Paraspeckles Paraspeckles NNP cord-000248-zueoyesj 1337 23 : : : cord-000248-zueoyesj 1337 24 a a DT cord-000248-zueoyesj 1337 25 novel novel JJ cord-000248-zueoyesj 1337 26 nuclear nuclear JJ cord-000248-zueoyesj 1337 27 domain domain NN cord-000248-zueoyesj 1338 1 A a DT cord-000248-zueoyesj 1338 2 NEAT neat JJ cord-000248-zueoyesj 1338 3 way way NN cord-000248-zueoyesj 1338 4 of of IN cord-000248-zueoyesj 1338 5 regulating regulate VBG cord-000248-zueoyesj 1338 6 nuclear nuclear JJ cord-000248-zueoyesj 1338 7 export export NN cord-000248-zueoyesj 1338 8 of of IN cord-000248-zueoyesj 1338 9 mRNAs mRNAs NNPS cord-000248-zueoyesj 1338 10 Genomic genomic JJ cord-000248-zueoyesj 1338 11 structure structure NN cord-000248-zueoyesj 1338 12 , , , cord-000248-zueoyesj 1338 13 chromosomal chromosomal JJ cord-000248-zueoyesj 1338 14 localization localization NN cord-000248-zueoyesj 1338 15 and and CC cord-000248-zueoyesj 1338 16 expression expression NN cord-000248-zueoyesj 1338 17 profile profile NN cord-000248-zueoyesj 1338 18 of of IN cord-000248-zueoyesj 1338 19 a a DT cord-000248-zueoyesj 1338 20 porcine porcine JJ cord-000248-zueoyesj 1338 21 long long JJ cord-000248-zueoyesj 1338 22 non non JJ cord-000248-zueoyesj 1338 23 - - JJ cord-000248-zueoyesj 1338 24 coding coding JJ cord-000248-zueoyesj 1338 25 RNA rna NN cord-000248-zueoyesj 1338 26 isolated isolate VBN cord-000248-zueoyesj 1338 27 from from IN cord-000248-zueoyesj 1338 28 long long JJ cord-000248-zueoyesj 1338 29 SAGE SAGE NNP cord-000248-zueoyesj 1338 30 libraries library NNS cord-000248-zueoyesj 1338 31 Apoptosis apoptosis NN cord-000248-zueoyesj 1338 32 , , , cord-000248-zueoyesj 1338 33 cell cell NN cord-000248-zueoyesj 1338 34 cycle cycle NN cord-000248-zueoyesj 1338 35 progression progression NN cord-000248-zueoyesj 1338 36 and and CC cord-000248-zueoyesj 1338 37 gene gene NN cord-000248-zueoyesj 1338 38 expression expression NN cord-000248-zueoyesj 1338 39 in in IN cord-000248-zueoyesj 1338 40 TP53-depleted TP53-depleted NNP cord-000248-zueoyesj 1338 41 HCT116 hct116 JJ cord-000248-zueoyesj 1338 42 colon colon NN cord-000248-zueoyesj 1338 43 cancer cancer NN cord-000248-zueoyesj 1338 44 cells cell NNS cord-000248-zueoyesj 1338 45 in in IN cord-000248-zueoyesj 1338 46 response response NN cord-000248-zueoyesj 1338 47 to to IN cord-000248-zueoyesj 1338 48 short short JJ cord-000248-zueoyesj 1338 49 - - HYPH cord-000248-zueoyesj 1338 50 term term NN cord-000248-zueoyesj 1338 51 5-fluorouracil 5-fluorouracil CD cord-000248-zueoyesj 1338 52 treatment treatment NN cord-000248-zueoyesj 1338 53 OCIA OCIA NNP cord-000248-zueoyesj 1338 54 domain domain NN cord-000248-zueoyesj 1338 55 containing contain VBG cord-000248-zueoyesj 1338 56 2 2 CD cord-000248-zueoyesj 1338 57 is be VBZ cord-000248-zueoyesj 1338 58 highly highly RB cord-000248-zueoyesj 1338 59 expressed express VBN cord-000248-zueoyesj 1338 60 in in IN cord-000248-zueoyesj 1338 61 adenocarcinoma adenocarcinoma NN cord-000248-zueoyesj 1338 62 mixed mixed JJ cord-000248-zueoyesj 1338 63 subtype subtype NN cord-000248-zueoyesj 1338 64 with with IN cord-000248-zueoyesj 1338 65 bronchioloalveolar bronchioloalveolar NNP cord-000248-zueoyesj 1338 66 carcinoma carcinoma NN cord-000248-zueoyesj 1338 67 component component NN cord-000248-zueoyesj 1338 68 and and CC cord-000248-zueoyesj 1338 69 is be VBZ cord-000248-zueoyesj 1338 70 associated associate VBN cord-000248-zueoyesj 1338 71 with with IN cord-000248-zueoyesj 1338 72 better well JJR cord-000248-zueoyesj 1338 73 prognosis prognosis NN cord-000248-zueoyesj 1339 1 Interacting interact VBG cord-000248-zueoyesj 1339 2 endogenous endogenous JJ cord-000248-zueoyesj 1339 3 and and CC cord-000248-zueoyesj 1339 4 exogenous exogenous JJ cord-000248-zueoyesj 1339 5 RNAi RNAi NNS cord-000248-zueoyesj 1339 6 pathways pathway NNS cord-000248-zueoyesj 1339 7 in in IN cord-000248-zueoyesj 1339 8 Caenorhabditis Caenorhabditis NNP cord-000248-zueoyesj 1339 9 elegans elegan NNS cord-000248-zueoyesj 1339 10 Inhibition inhibition NN cord-000248-zueoyesj 1339 11 of of IN cord-000248-zueoyesj 1339 12 alloresponse alloresponse NN cord-000248-zueoyesj 1339 13 by by IN cord-000248-zueoyesj 1339 14 a a DT cord-000248-zueoyesj 1339 15 human human JJ cord-000248-zueoyesj 1339 16 trophoblast trophoblast NN cord-000248-zueoyesj 1339 17 non non JJ cord-000248-zueoyesj 1339 18 - - JJ cord-000248-zueoyesj 1339 19 coding code VBG cord-000248-zueoyesj 1339 20 RNA rna NN cord-000248-zueoyesj 1339 21 suppressing suppress VBG cord-000248-zueoyesj 1339 22 class class NN cord-000248-zueoyesj 1339 23 II II NNP cord-000248-zueoyesj 1339 24 transactivator transactivator NN cord-000248-zueoyesj 1339 25 promoter promoter NN cord-000248-zueoyesj 1339 26 III III NNP cord-000248-zueoyesj 1339 27 and and CC cord-000248-zueoyesj 1339 28 major major JJ cord-000248-zueoyesj 1339 29 histocompatibility histocompatibility NN cord-000248-zueoyesj 1339 30 class class NN cord-000248-zueoyesj 1339 31 II ii CD cord-000248-zueoyesj 1339 32 expression expression NN cord-000248-zueoyesj 1339 33 in in IN cord-000248-zueoyesj 1339 34 murine murine JJ cord-000248-zueoyesj 1339 35 Blymphocytes Blymphocytes NNP cord-000248-zueoyesj 1339 36 Class Class NNP cord-000248-zueoyesj 1339 37 II II NNP cord-000248-zueoyesj 1339 38 transactivator transactivator NN cord-000248-zueoyesj 1339 39 promoter promoter NN cord-000248-zueoyesj 1339 40 activity activity NN cord-000248-zueoyesj 1339 41 is be VBZ cord-000248-zueoyesj 1339 42 suppressed suppress VBN cord-000248-zueoyesj 1339 43 through through IN cord-000248-zueoyesj 1339 44 regulation regulation NN cord-000248-zueoyesj 1339 45 by by IN cord-000248-zueoyesj 1339 46 a a DT cord-000248-zueoyesj 1339 47 trophoblast trophoblast JJ cord-000248-zueoyesj 1339 48 noncoding noncode VBG cord-000248-zueoyesj 1339 49 RNA RNA NNP cord-000248-zueoyesj 1339 50 MicroRNAs MicroRNAs NNPS cord-000248-zueoyesj 1339 51 and and CC cord-000248-zueoyesj 1339 52 other other JJ cord-000248-zueoyesj 1339 53 tiny tiny JJ cord-000248-zueoyesj 1339 54 endogenous endogenous JJ cord-000248-zueoyesj 1339 55 RNAs rna NNS cord-000248-zueoyesj 1339 56 in in IN cord-000248-zueoyesj 1339 57 C. C. NNP cord-000248-zueoyesj 1339 58 elegans elegan VBZ cord-000248-zueoyesj 1339 59 Human Human NNP cord-000248-zueoyesj 1339 60 trophoblast trophoblast NNP cord-000248-zueoyesj 1339 61 noncoding noncoding NNP cord-000248-zueoyesj 1339 62 RNA RNA NNP cord-000248-zueoyesj 1339 63 suppresses suppress VBZ cord-000248-zueoyesj 1339 64 CIITA CIITA NNP cord-000248-zueoyesj 1339 65 promoter promoter NN cord-000248-zueoyesj 1339 66 III iii CD cord-000248-zueoyesj 1339 67 activity activity NN cord-000248-zueoyesj 1339 68 in in IN cord-000248-zueoyesj 1339 69 murine murine JJ cord-000248-zueoyesj 1339 70 B b NN cord-000248-zueoyesj 1339 71 - - HYPH cord-000248-zueoyesj 1339 72 lymphocytes lymphocyte NNS cord-000248-zueoyesj 1339 73 Role role NN cord-000248-zueoyesj 1339 74 of of IN cord-000248-zueoyesj 1339 75 human human JJ cord-000248-zueoyesj 1339 76 noncoding noncoding JJ cord-000248-zueoyesj 1339 77 RNAs rna NNS cord-000248-zueoyesj 1339 78 in in IN cord-000248-zueoyesj 1339 79 the the DT cord-000248-zueoyesj 1339 80 control control NN cord-000248-zueoyesj 1339 81 of of IN cord-000248-zueoyesj 1339 82 tumorigenesis tumorigenesis NN cord-000248-zueoyesj 1339 83 Intensive intensive JJ cord-000248-zueoyesj 1339 84 entropic entropic JJ cord-000248-zueoyesj 1339 85 non non JJ cord-000248-zueoyesj 1339 86 - - JJ cord-000248-zueoyesj 1339 87 triviality triviality JJ cord-000248-zueoyesj 1339 88 measure measure NN cord-000248-zueoyesj 1339 89 Statistical statistical JJ cord-000248-zueoyesj 1339 90 complexity complexity NN cord-000248-zueoyesj 1339 91 and and CC cord-000248-zueoyesj 1339 92 disequilibrium disequilibrium NN cord-000248-zueoyesj 1340 1 Distinguishing distinguish VBG cord-000248-zueoyesj 1340 2 noise noise NN cord-000248-zueoyesj 1340 3 from from IN cord-000248-zueoyesj 1340 4 chaos chaos NN cord-000248-zueoyesj 1340 5 Microarrays Microarrays NNP cord-000248-zueoyesj 1340 6 - - HYPH cord-000248-zueoyesj 1340 7 identifying identify VBG cord-000248-zueoyesj 1340 8 molecular molecular JJ cord-000248-zueoyesj 1340 9 portraits portrait NNS cord-000248-zueoyesj 1340 10 for for IN cord-000248-zueoyesj 1340 11 prostate prostate NN cord-000248-zueoyesj 1340 12 tumors tumor NNS cord-000248-zueoyesj 1340 13 with with IN cord-000248-zueoyesj 1340 14 different different JJ cord-000248-zueoyesj 1340 15 Gleason Gleason NNP cord-000248-zueoyesj 1340 16 patterns pattern NNS cord-000248-zueoyesj 1340 17 Molecular molecular JJ cord-000248-zueoyesj 1340 18 portraits portrait NNS cord-000248-zueoyesj 1340 19 of of IN cord-000248-zueoyesj 1340 20 human human JJ cord-000248-zueoyesj 1340 21 breast breast NN cord-000248-zueoyesj 1340 22 tumours tumour NNS cord-000248-zueoyesj 1341 1 Molecular molecular JJ cord-000248-zueoyesj 1341 2 characterisation characterisation NN cord-000248-zueoyesj 1341 3 of of IN cord-000248-zueoyesj 1341 4 soft soft JJ cord-000248-zueoyesj 1341 5 tissue tissue NN cord-000248-zueoyesj 1341 6 tumours tumour NNS cord-000248-zueoyesj 1341 7 : : : cord-000248-zueoyesj 1342 1 a a DT cord-000248-zueoyesj 1342 2 gene gene NN cord-000248-zueoyesj 1342 3 expression expression NN cord-000248-zueoyesj 1342 4 study study NN cord-000248-zueoyesj 1342 5 Correlation Correlation NNP cord-000248-zueoyesj 1342 6 Theory Theory NNP cord-000248-zueoyesj 1342 7 of of IN cord-000248-zueoyesj 1342 8 Statistically statistically RB cord-000248-zueoyesj 1342 9 Optimal Optimal NNP cord-000248-zueoyesj 1342 10 Systems Systems NNPS cord-000248-zueoyesj 1342 11 Gelbaum Gelbaum NNP cord-000248-zueoyesj 1342 12 BR BR NNP cord-000248-zueoyesj 1342 13 Information information NN cord-000248-zueoyesj 1342 14 Theory Theory NNP cord-000248-zueoyesj 1342 15 , , , cord-000248-zueoyesj 1342 16 Inference inference NN cord-000248-zueoyesj 1342 17 , , , cord-000248-zueoyesj 1342 18 and and CC cord-000248-zueoyesj 1342 19 Learning learn VBG cord-000248-zueoyesj 1342 20 Algorithms Algorithms NNP cord-000248-zueoyesj 1343 1 A a DT cord-000248-zueoyesj 1343 2 statistical statistical JJ cord-000248-zueoyesj 1343 3 measure measure NN cord-000248-zueoyesj 1343 4 of of IN cord-000248-zueoyesj 1343 5 complexity complexity NN cord-000248-zueoyesj 1343 6 Analysis analysis NN cord-000248-zueoyesj 1343 7 of of IN cord-000248-zueoyesj 1343 8 symbolic symbolic JJ cord-000248-zueoyesj 1343 9 sequences sequence NNS cord-000248-zueoyesj 1343 10 using use VBG cord-000248-zueoyesj 1343 11 the the DT cord-000248-zueoyesj 1343 12 Jensen Jensen NNP cord-000248-zueoyesj 1343 13 - - HYPH cord-000248-zueoyesj 1343 14 Shannon Shannon NNP cord-000248-zueoyesj 1343 15 divergence divergence NN cord-000248-zueoyesj 1343 16 Effect effect NN cord-000248-zueoyesj 1343 17 of of IN cord-000248-zueoyesj 1343 18 chain chain NN cord-000248-zueoyesj 1343 19 length length NN cord-000248-zueoyesj 1343 20 on on IN cord-000248-zueoyesj 1343 21 fragility fragility NN cord-000248-zueoyesj 1343 22 and and CC cord-000248-zueoyesj 1343 23 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1343 24 scaling scaling NN cord-000248-zueoyesj 1343 25 of of IN cord-000248-zueoyesj 1343 26 the the DT cord-000248-zueoyesj 1343 27 local local JJ cord-000248-zueoyesj 1343 28 segmental segmental JJ cord-000248-zueoyesj 1343 29 dynamics dynamic NNS cord-000248-zueoyesj 1343 30 in in IN cord-000248-zueoyesj 1343 31 poly(methylmethacrylate poly(methylmethacrylate NN cord-000248-zueoyesj 1343 32 ) ) -RRB- cord-000248-zueoyesj 1344 1 Length length NN cord-000248-zueoyesj 1344 2 of of IN cord-000248-zueoyesj 1344 3 time time NN cord-000248-zueoyesj 1344 4 's 's POS cord-000248-zueoyesj 1344 5 arrow arrow NN cord-000248-zueoyesj 1344 6 Measuring measure VBG cord-000248-zueoyesj 1344 7 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1344 8 length length NN cord-000248-zueoyesj 1345 1 Far far RB cord-000248-zueoyesj 1345 2 - - HYPH cord-000248-zueoyesj 1345 3 from from IN cord-000248-zueoyesj 1345 4 - - HYPH cord-000248-zueoyesj 1345 5 equilibrium equilibrium NN cord-000248-zueoyesj 1345 6 measurements measurement NNS cord-000248-zueoyesj 1345 7 of of IN cord-000248-zueoyesj 1345 8 thermodynamic thermodynamic JJ cord-000248-zueoyesj 1345 9 length length NN cord-000248-zueoyesj 1345 10 Empirical empirical JJ cord-000248-zueoyesj 1345 11 Relationships Relationships NNPS cord-000248-zueoyesj 1345 12 between between IN cord-000248-zueoyesj 1345 13 Species Species NNP cord-000248-zueoyesj 1345 14 Richness Richness NNP cord-000248-zueoyesj 1345 15 , , , cord-000248-zueoyesj 1345 16 Evenness evenness NN cord-000248-zueoyesj 1345 17 , , , cord-000248-zueoyesj 1345 18 and and CC cord-000248-zueoyesj 1345 19 Proportional Proportional NNP cord-000248-zueoyesj 1345 20 Diversity Diversity NNP cord-000248-zueoyesj 1346 1 The the DT cord-000248-zueoyesj 1346 2 functional functional JJ cord-000248-zueoyesj 1346 3 2443T 2443T NNP cord-000248-zueoyesj 1346 4 / / SYM cord-000248-zueoyesj 1346 5 C C NNP cord-000248-zueoyesj 1346 6 osteopontin osteopontin NNP cord-000248-zueoyesj 1346 7 promoter promoter NN cord-000248-zueoyesj 1346 8 polymorphism polymorphism NN cord-000248-zueoyesj 1346 9 influences influence VBZ cord-000248-zueoyesj 1346 10 osteopontin osteopontin NNP cord-000248-zueoyesj 1346 11 gene gene NN cord-000248-zueoyesj 1346 12 expression expression NN cord-000248-zueoyesj 1346 13 in in IN cord-000248-zueoyesj 1346 14 melanoma melanoma NN cord-000248-zueoyesj 1346 15 cells cell NNS cord-000248-zueoyesj 1346 16 via via IN cord-000248-zueoyesj 1346 17 binding binding NN cord-000248-zueoyesj 1346 18 of of IN cord-000248-zueoyesj 1346 19 c c NNP cord-000248-zueoyesj 1346 20 - - : cord-000248-zueoyesj 1346 21 Myb Myb NNP cord-000248-zueoyesj 1346 22 transcription transcription NN cord-000248-zueoyesj 1346 23 factor factor NN cord-000248-zueoyesj 1346 24 Tumor tumor NN cord-000248-zueoyesj 1346 25 necrosis necrosis NN cord-000248-zueoyesj 1346 26 is be VBZ cord-000248-zueoyesj 1346 27 associated associate VBN cord-000248-zueoyesj 1346 28 with with IN cord-000248-zueoyesj 1346 29 increased increase VBN cord-000248-zueoyesj 1346 30 alphavbeta3 alphavbeta3 NN cord-000248-zueoyesj 1346 31 integrin integrin JJ cord-000248-zueoyesj 1346 32 expression expression NN cord-000248-zueoyesj 1346 33 and and CC cord-000248-zueoyesj 1346 34 poor poor JJ cord-000248-zueoyesj 1346 35 prognosis prognosis NN cord-000248-zueoyesj 1346 36 in in IN cord-000248-zueoyesj 1346 37 nodular nodular JJ cord-000248-zueoyesj 1346 38 cutaneous cutaneous JJ cord-000248-zueoyesj 1346 39 melanomas melanoma NNS cord-000248-zueoyesj 1346 40 Osteopontin Osteopontin NNP cord-000248-zueoyesj 1346 41 as as IN cord-000248-zueoyesj 1346 42 a a DT cord-000248-zueoyesj 1346 43 serologic serologic JJ cord-000248-zueoyesj 1346 44 marker marker NN cord-000248-zueoyesj 1346 45 for for IN cord-000248-zueoyesj 1346 46 metastatic metastatic JJ cord-000248-zueoyesj 1346 47 uveal uveal JJ cord-000248-zueoyesj 1346 48 melanoma melanoma NN cord-000248-zueoyesj 1346 49 : : : cord-000248-zueoyesj 1346 50 results result NNS cord-000248-zueoyesj 1346 51 of of IN cord-000248-zueoyesj 1346 52 a a DT cord-000248-zueoyesj 1346 53 pilot pilot NN cord-000248-zueoyesj 1346 54 study study NN cord-000248-zueoyesj 1346 55 Stable stable JJ cord-000248-zueoyesj 1346 56 overexpression overexpression NN cord-000248-zueoyesj 1346 57 of of IN cord-000248-zueoyesj 1346 58 Smad7 Smad7 NNP cord-000248-zueoyesj 1346 59 in in IN cord-000248-zueoyesj 1346 60 human human JJ cord-000248-zueoyesj 1346 61 melanoma melanoma NN cord-000248-zueoyesj 1346 62 cells cell NNS cord-000248-zueoyesj 1346 63 impairs impair VBZ cord-000248-zueoyesj 1346 64 bone bone NN cord-000248-zueoyesj 1346 65 metastasis metastasis NN cord-000248-zueoyesj 1346 66 Analysis Analysis NNP cord-000248-zueoyesj 1346 67 of of IN cord-000248-zueoyesj 1346 68 gene gene NN cord-000248-zueoyesj 1346 69 expression expression NN cord-000248-zueoyesj 1346 70 in in IN cord-000248-zueoyesj 1346 71 the the DT cord-000248-zueoyesj 1346 72 tumor tumor NN cord-000248-zueoyesj 1346 73 - - HYPH cord-000248-zueoyesj 1346 74 associated associate VBN cord-000248-zueoyesj 1346 75 macrophage macrophage NN cord-000248-zueoyesj 1346 76 Nuclear nuclear JJ cord-000248-zueoyesj 1346 77 factor factor NN cord-000248-zueoyesj 1346 78 inducing inducing NN cord-000248-zueoyesj 1346 79 kinase kinase NN cord-000248-zueoyesj 1346 80 : : : cord-000248-zueoyesj 1346 81 a a DT cord-000248-zueoyesj 1346 82 key key JJ cord-000248-zueoyesj 1346 83 regulator regulator NN cord-000248-zueoyesj 1346 84 in in IN cord-000248-zueoyesj 1346 85 osteopontin osteopontin NN cord-000248-zueoyesj 1346 86 - - HYPH cord-000248-zueoyesj 1346 87 induced induce VBN cord-000248-zueoyesj 1346 88 MAPK MAPK NNP cord-000248-zueoyesj 1346 89 / / SYM cord-000248-zueoyesj 1346 90 IkappaB IkappaB NNP cord-000248-zueoyesj 1346 91 kinase kinase VBZ cord-000248-zueoyesj 1346 92 dependent dependent JJ cord-000248-zueoyesj 1346 93 NF nf NN cord-000248-zueoyesj 1346 94 - - HYPH cord-000248-zueoyesj 1346 95 kappaB kappaB NNP cord-000248-zueoyesj 1346 96 - - HYPH cord-000248-zueoyesj 1346 97 mediated mediate VBN cord-000248-zueoyesj 1346 98 promatrix promatrix NN cord-000248-zueoyesj 1346 99 metalloproteinase-9 metalloproteinase-9 NNP cord-000248-zueoyesj 1346 100 activation activation NN cord-000248-zueoyesj 1347 1 Prostate prostate NN cord-000248-zueoyesj 1347 2 - - HYPH cord-000248-zueoyesj 1347 3 specific specific JJ cord-000248-zueoyesj 1347 4 antigen antigen NN cord-000248-zueoyesj 1347 5 modulates modulate VBZ cord-000248-zueoyesj 1347 6 genes gene NNS cord-000248-zueoyesj 1347 7 involved involve VBN cord-000248-zueoyesj 1347 8 in in IN cord-000248-zueoyesj 1347 9 bone bone NN cord-000248-zueoyesj 1347 10 remodeling remodeling NN cord-000248-zueoyesj 1347 11 and and CC cord-000248-zueoyesj 1347 12 induces induce VBZ cord-000248-zueoyesj 1347 13 osteoblast osteoblast JJ cord-000248-zueoyesj 1347 14 differentiation differentiation NN cord-000248-zueoyesj 1347 15 of of IN cord-000248-zueoyesj 1347 16 human human JJ cord-000248-zueoyesj 1347 17 osteosarcoma osteosarcoma NN cord-000248-zueoyesj 1347 18 cell cell NN cord-000248-zueoyesj 1347 19 line line NN cord-000248-zueoyesj 1347 20 SaOS-2 SaOS-2 . cord-000248-zueoyesj 1348 1 The the DT cord-000248-zueoyesj 1348 2 authors author NNS cord-000248-zueoyesj 1348 3 would would MD cord-000248-zueoyesj 1348 4 like like VB cord-000248-zueoyesj 1348 5 to to TO cord-000248-zueoyesj 1348 6 thank thank VB cord-000248-zueoyesj 1348 7 three three CD cord-000248-zueoyesj 1348 8 Research Research NNP cord-000248-zueoyesj 1348 9 Associates Associates NNPS cord-000248-zueoyesj 1348 10 of of IN cord-000248-zueoyesj 1348 11 our -PRON- PRP$ cord-000248-zueoyesj 1348 12 Centre Centre NNP cord-000248-zueoyesj 1348 13 ( ( -LRB- cord-000248-zueoyesj 1348 14 Osvaldo Osvaldo NNP cord-000248-zueoyesj 1348 15 Rosso Rosso NNP cord-000248-zueoyesj 1348 16 , , , cord-000248-zueoyesj 1348 17 Carlos Carlos NNP cord-000248-zueoyesj 1348 18 Riveros Riveros NNP cord-000248-zueoyesj 1348 19 and and CC cord-000248-zueoyesj 1348 20 John John NNP cord-000248-zueoyesj 1348 21 Marsden Marsden NNP cord-000248-zueoyesj 1348 22 ) ) -RRB- cord-000248-zueoyesj 1348 23 for for IN cord-000248-zueoyesj 1348 24 discussions discussion NNS cord-000248-zueoyesj 1348 25 on on IN cord-000248-zueoyesj 1348 26 this this DT cord-000248-zueoyesj 1348 27 topic topic NN cord-000248-zueoyesj 1348 28 . . . cord-000248-zueoyesj 1349 1 We -PRON- PRP cord-000248-zueoyesj 1349 2 thank thank VBP cord-000248-zueoyesj 1349 3 the the DT cord-000248-zueoyesj 1349 4 first first JJ cord-000248-zueoyesj 1349 5 two two CD cord-000248-zueoyesj 1349 6 , , , cord-000248-zueoyesj 1349 7 in in IN cord-000248-zueoyesj 1349 8 particular particular JJ cord-000248-zueoyesj 1349 9 to to IN cord-000248-zueoyesj 1349 10 Osvaldo Osvaldo NNP cord-000248-zueoyesj 1349 11 , , , cord-000248-zueoyesj 1349 12 for for IN cord-000248-zueoyesj 1349 13 their -PRON- PRP$ cord-000248-zueoyesj 1349 14 collaboration collaboration NN cord-000248-zueoyesj 1349 15 on on IN cord-000248-zueoyesj 1349 16 data datum NNS cord-000248-zueoyesj 1349 17 cleaning cleaning NN cord-000248-zueoyesj 1349 18 and and CC cord-000248-zueoyesj 1349 19 the the DT cord-000248-zueoyesj 1349 20 computation computation NN cord-000248-zueoyesj 1349 21 of of IN cord-000248-zueoyesj 1349 22 the the DT cord-000248-zueoyesj 1349 23 Entropy Entropy NNP cord-000248-zueoyesj 1349 24 and and CC cord-000248-zueoyesj 1349 25 Jensen Jensen NNP cord-000248-zueoyesj 1349 26 - - HYPH cord-000248-zueoyesj 1349 27 Shannon Shannon NNP cord-000248-zueoyesj 1349 28 divergences divergence NNS cord-000248-zueoyesj 1349 29 . . . cord-000248-zueoyesj 1350 1 We -PRON- PRP cord-000248-zueoyesj 1350 2 thank thank VBP cord-000248-zueoyesj 1350 3 Marsden Marsden NNP cord-000248-zueoyesj 1350 4 for for IN cord-000248-zueoyesj 1350 5 his -PRON- PRP$ cord-000248-zueoyesj 1350 6 advice advice NN cord-000248-zueoyesj 1350 7 on on IN cord-000248-zueoyesj 1350 8 editing edit VBG cord-000248-zueoyesj 1350 9 the the DT cord-000248-zueoyesj 1350 10 final final JJ cord-000248-zueoyesj 1350 11 draft draft NN cord-000248-zueoyesj 1350 12 . . . cord-000248-zueoyesj 1351 1 PM pm NN cord-000248-zueoyesj 1351 2 would would MD cord-000248-zueoyesj 1351 3 also also RB cord-000248-zueoyesj 1351 4 like like VB cord-000248-zueoyesj 1351 5 to to TO cord-000248-zueoyesj 1351 6 thank thank VB cord-000248-zueoyesj 1351 7 two two CD cord-000248-zueoyesj 1351 8 stimulating stimulate VBG cord-000248-zueoyesj 1351 9 discussions discussion NNS cord-000248-zueoyesj 1351 10 ( ( -LRB- cord-000248-zueoyesj 1351 11 decades decade NNS cord-000248-zueoyesj 1351 12 apart apart RB cord-000248-zueoyesj 1351 13 ) ) -RRB- cord-000248-zueoyesj 1351 14 with with IN cord-000248-zueoyesj 1351 15 Dr. Dr. NNP cord-000248-zueoyesj 1351 16 Carlos Carlos NNP cord-000248-zueoyesj 1351 17 Reigosa Reigosa NNP cord-000248-zueoyesj 1351 18 and and CC cord-000248-zueoyesj 1351 19 Prof. Prof. NNP cord-000248-zueoyesj 1351 20 Elizabeth Elizabeth NNP cord-000248-zueoyesj 1351 21 Blackburn Blackburn NNP cord-000248-zueoyesj 1351 22 , , , cord-000248-zueoyesj 1351 23 as as RB cord-000248-zueoyesj 1351 24 well well RB cord-000248-zueoyesj 1351 25 as as IN cord-000248-zueoyesj 1351 26 the the DT cord-000248-zueoyesj 1351 27 invisible invisible JJ cord-000248-zueoyesj 1351 28 hand hand NN cord-000248-zueoyesj 1351 29 of of IN cord-000248-zueoyesj 1351 30 Prof. Prof. NNP cord-000248-zueoyesj 1351 31 Yaser Yaser NNP cord-000248-zueoyesj 1351 32 Abu Abu NNP cord-000248-zueoyesj 1351 33 - - HYPH cord-000248-zueoyesj 1351 34 Mostafa Mostafa NNP cord-000248-zueoyesj 1351 35 . . . cord-000248-zueoyesj 1351 36 _SP