id sid tid token lemma pos cord-318057-xagh68jc 1 1 key key NN cord-318057-xagh68jc 1 2 : : : cord-318057-xagh68jc 1 3 cord-318057-xagh68jc cord-318057-xagh68jc CD cord-318057-xagh68jc 1 4 authors author NNS cord-318057-xagh68jc 1 5 : : : cord-318057-xagh68jc 1 6 Gunson Gunson NNP cord-318057-xagh68jc 1 7 , , , cord-318057-xagh68jc 1 8 Rory Rory NNP cord-318057-xagh68jc 1 9 N N NNP cord-318057-xagh68jc 1 10 ; ; : cord-318057-xagh68jc 1 11 Carman Carman NNP cord-318057-xagh68jc 1 12 , , , cord-318057-xagh68jc 1 13 William William NNP cord-318057-xagh68jc 1 14 F F NNP cord-318057-xagh68jc 1 15 title title NN cord-318057-xagh68jc 1 16 : : : cord-318057-xagh68jc 1 17 During during IN cord-318057-xagh68jc 1 18 the the DT cord-318057-xagh68jc 1 19 summer summer NN cord-318057-xagh68jc 1 20 2009 2009 CD cord-318057-xagh68jc 1 21 outbreak outbreak NN cord-318057-xagh68jc 1 22 of of IN cord-318057-xagh68jc 1 23 " " `` cord-318057-xagh68jc 1 24 swine swine NN cord-318057-xagh68jc 1 25 flu flu NN cord-318057-xagh68jc 1 26 " " '' cord-318057-xagh68jc 1 27 in in IN cord-318057-xagh68jc 1 28 Scotland Scotland NNP cord-318057-xagh68jc 1 29 what what WDT cord-318057-xagh68jc 1 30 respiratory respiratory JJ cord-318057-xagh68jc 1 31 pathogens pathogen NNS cord-318057-xagh68jc 1 32 were be VBD cord-318057-xagh68jc 1 33 diagnosed diagnose VBN cord-318057-xagh68jc 1 34 as as IN cord-318057-xagh68jc 1 35 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 1 36 ? ? . cord-318057-xagh68jc 1 37 date date NN cord-318057-xagh68jc 1 38 : : : cord-318057-xagh68jc 1 39 2011 2011 CD cord-318057-xagh68jc 1 40 - - SYM cord-318057-xagh68jc 1 41 07 07 CD cord-318057-xagh68jc 1 42 - - SYM cord-318057-xagh68jc 1 43 13 13 CD cord-318057-xagh68jc 1 44 journal journal NN cord-318057-xagh68jc 1 45 : : : cord-318057-xagh68jc 2 1 BMC BMC NNP cord-318057-xagh68jc 2 2 Infect infect VB cord-318057-xagh68jc 2 3 Dis Dis NNP cord-318057-xagh68jc 2 4 DOI doi NN cord-318057-xagh68jc 2 5 : : : cord-318057-xagh68jc 2 6 10.1186/1471 10.1186/1471 CD cord-318057-xagh68jc 2 7 - - HYPH cord-318057-xagh68jc 2 8 2334 2334 CD cord-318057-xagh68jc 2 9 - - HYPH cord-318057-xagh68jc 2 10 11 11 CD cord-318057-xagh68jc 2 11 - - SYM cord-318057-xagh68jc 2 12 192 192 CD cord-318057-xagh68jc 2 13 sha sha NN cord-318057-xagh68jc 2 14 : : : cord-318057-xagh68jc 2 15 c7f717457621e576d69c56b61d9ad9bd52a8a8b5 c7f717457621e576d69c56b61d9ad9bd52a8a8b5 . cord-318057-xagh68jc 3 1 doc_id doc_id CD cord-318057-xagh68jc 3 2 : : : cord-318057-xagh68jc 3 3 318057 318057 CD cord-318057-xagh68jc 3 4 cord_uid cord_uid NN cord-318057-xagh68jc 3 5 : : : cord-318057-xagh68jc 4 1 xagh68jc xagh68jc NNP cord-318057-xagh68jc 4 2 BACKGROUND BACKGROUND NNP cord-318057-xagh68jc 4 3 : : : cord-318057-xagh68jc 5 1 During during IN cord-318057-xagh68jc 5 2 the the DT cord-318057-xagh68jc 5 3 April April NNP cord-318057-xagh68jc 5 4 - - HYPH cord-318057-xagh68jc 5 5 July July NNP cord-318057-xagh68jc 5 6 2009 2009 CD cord-318057-xagh68jc 5 7 outbreak outbreak NN cord-318057-xagh68jc 5 8 of of IN cord-318057-xagh68jc 5 9 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 5 10 in in IN cord-318057-xagh68jc 5 11 scotland scotland NNP cord-318057-xagh68jc 6 1 the the DT cord-318057-xagh68jc 6 2 West West NNP cord-318057-xagh68jc 6 3 of of IN cord-318057-xagh68jc 6 4 Scotland Scotland NNP cord-318057-xagh68jc 6 5 Specialist Specialist NNP cord-318057-xagh68jc 6 6 Virology Virology NNP cord-318057-xagh68jc 6 7 Centre Centre NNP cord-318057-xagh68jc 6 8 ( ( -LRB- cord-318057-xagh68jc 6 9 WoSSVC WoSSVC NNP cord-318057-xagh68jc 6 10 ) ) -RRB- cord-318057-xagh68jc 6 11 in in IN cord-318057-xagh68jc 6 12 Glasgow Glasgow NNP cord-318057-xagh68jc 6 13 tested test VBD cord-318057-xagh68jc 6 14 > > XX cord-318057-xagh68jc 6 15 16 16 CD cord-318057-xagh68jc 6 16 000 000 CD cord-318057-xagh68jc 6 17 clinical clinical JJ cord-318057-xagh68jc 6 18 samples sample NNS cord-318057-xagh68jc 6 19 for for IN cord-318057-xagh68jc 6 20 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 6 21 . . . cord-318057-xagh68jc 7 1 Most Most JJS cord-318057-xagh68jc 7 2 were be VBD cord-318057-xagh68jc 7 3 from from IN cord-318057-xagh68jc 7 4 patients patient NNS cord-318057-xagh68jc 7 5 clinically clinically RB cord-318057-xagh68jc 7 6 diagnosed diagnose VBN cord-318057-xagh68jc 7 7 with with IN cord-318057-xagh68jc 7 8 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 7 9 . . . cord-318057-xagh68jc 8 1 Out out IN cord-318057-xagh68jc 8 2 of of IN cord-318057-xagh68jc 8 3 these these DT cord-318057-xagh68jc 8 4 , , , cord-318057-xagh68jc 8 5 9 9 CD cord-318057-xagh68jc 8 6 % % NN cord-318057-xagh68jc 8 7 were be VBD cord-318057-xagh68jc 8 8 positive positive JJ cord-318057-xagh68jc 8 9 . . . cord-318057-xagh68jc 9 1 This this DT cord-318057-xagh68jc 9 2 study study NN cord-318057-xagh68jc 9 3 sought seek VBD cord-318057-xagh68jc 9 4 to to TO cord-318057-xagh68jc 9 5 determine determine VB cord-318057-xagh68jc 9 6 what what WP cord-318057-xagh68jc 9 7 respiratory respiratory JJ cord-318057-xagh68jc 9 8 pathogens pathogen NNS cord-318057-xagh68jc 9 9 were be VBD cord-318057-xagh68jc 9 10 misdiagnosed misdiagnose VBN cord-318057-xagh68jc 9 11 as as IN cord-318057-xagh68jc 9 12 cases case NNS cord-318057-xagh68jc 9 13 of of IN cord-318057-xagh68jc 9 14 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 9 15 during during IN cord-318057-xagh68jc 9 16 this this DT cord-318057-xagh68jc 9 17 time time NN cord-318057-xagh68jc 9 18 . . . cord-318057-xagh68jc 10 1 METHODS methods NN cord-318057-xagh68jc 10 2 : : : cord-318057-xagh68jc 11 1 We -PRON- PRP cord-318057-xagh68jc 11 2 examined examine VBD cord-318057-xagh68jc 11 3 the the DT cord-318057-xagh68jc 11 4 results result NNS cord-318057-xagh68jc 11 5 from from IN cord-318057-xagh68jc 11 6 3247 3247 CD cord-318057-xagh68jc 11 7 samples sample NNS cord-318057-xagh68jc 11 8 which which WDT cord-318057-xagh68jc 11 9 were be VBD cord-318057-xagh68jc 11 10 sent send VBN cord-318057-xagh68jc 11 11 to to IN cord-318057-xagh68jc 11 12 the the DT cord-318057-xagh68jc 11 13 laboratory laboratory NN cord-318057-xagh68jc 11 14 during during IN cord-318057-xagh68jc 11 15 April April NNP cord-318057-xagh68jc 11 16 - - HYPH cord-318057-xagh68jc 11 17 July July NNP cord-318057-xagh68jc 11 18 2009 2009 CD cord-318057-xagh68jc 11 19 . . . cord-318057-xagh68jc 12 1 All all DT cord-318057-xagh68jc 12 2 were be VBD cord-318057-xagh68jc 12 3 from from IN cord-318057-xagh68jc 12 4 patients patient NNS cord-318057-xagh68jc 12 5 clinically clinically RB cord-318057-xagh68jc 12 6 diagnosed diagnose VBN cord-318057-xagh68jc 12 7 as as IN cord-318057-xagh68jc 12 8 having have VBG cord-318057-xagh68jc 12 9 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 12 10 ( ( -LRB- cord-318057-xagh68jc 12 11 based base VBN cord-318057-xagh68jc 12 12 on on IN cord-318057-xagh68jc 12 13 accepted accept VBN cord-318057-xagh68jc 12 14 criteria criterion NNS cord-318057-xagh68jc 12 15 ) ) -RRB- cord-318057-xagh68jc 12 16 and and CC cord-318057-xagh68jc 12 17 all all DT cord-318057-xagh68jc 12 18 were be VBD cord-318057-xagh68jc 12 19 given give VBN cord-318057-xagh68jc 12 20 a a DT cord-318057-xagh68jc 12 21 full full JJ cord-318057-xagh68jc 12 22 respiratory respiratory JJ cord-318057-xagh68jc 12 23 screen screen NN cord-318057-xagh68jc 12 24 using use VBG cord-318057-xagh68jc 12 25 real real JJ cord-318057-xagh68jc 12 26 time time NN cord-318057-xagh68jc 12 27 reverse reverse NN cord-318057-xagh68jc 12 28 transcriptase transcriptase NN cord-318057-xagh68jc 12 29 polymerase polymerase NN cord-318057-xagh68jc 12 30 chain chain NN cord-318057-xagh68jc 12 31 reaction reaction NN cord-318057-xagh68jc 12 32 ( ( -LRB- cord-318057-xagh68jc 12 33 rtRT rtRT NNP cord-318057-xagh68jc 12 34 - - HYPH cord-318057-xagh68jc 12 35 PCR PCR NNP cord-318057-xagh68jc 12 36 ) ) -RRB- cord-318057-xagh68jc 12 37 assays assay NNS cord-318057-xagh68jc 12 38 . . . cord-318057-xagh68jc 13 1 RESULTS result NNS cord-318057-xagh68jc 13 2 : : : cord-318057-xagh68jc 14 1 In in IN cord-318057-xagh68jc 14 2 total total JJ cord-318057-xagh68jc 14 3 , , , cord-318057-xagh68jc 14 4 respiratory respiratory JJ cord-318057-xagh68jc 14 5 pathogens pathogen NNS cord-318057-xagh68jc 14 6 were be VBD cord-318057-xagh68jc 14 7 detected detect VBN cord-318057-xagh68jc 14 8 in in IN cord-318057-xagh68jc 14 9 27.9 27.9 CD cord-318057-xagh68jc 14 10 % % NN cord-318057-xagh68jc 14 11 ( ( -LRB- cord-318057-xagh68jc 14 12 95 95 CD cord-318057-xagh68jc 14 13 % % NN cord-318057-xagh68jc 14 14 confidence confidence NN cord-318057-xagh68jc 14 15 interval interval NN cord-318057-xagh68jc 14 16 , , , cord-318057-xagh68jc 14 17 26.3 26.3 CD cord-318057-xagh68jc 14 18 - - HYPH cord-318057-xagh68jc 14 19 29.5 29.5 CD cord-318057-xagh68jc 14 20 % % NN cord-318057-xagh68jc 14 21 ) ) -RRB- cord-318057-xagh68jc 14 22 of of IN cord-318057-xagh68jc 14 23 the the DT cord-318057-xagh68jc 14 24 samples sample NNS cord-318057-xagh68jc 14 25 submitted submit VBN cord-318057-xagh68jc 14 26 . . . cord-318057-xagh68jc 15 1 Numerous numerous JJ cord-318057-xagh68jc 15 2 pathogens pathogen NNS cord-318057-xagh68jc 15 3 were be VBD cord-318057-xagh68jc 15 4 detected detect VBN cord-318057-xagh68jc 15 5 , , , cord-318057-xagh68jc 15 6 the the DT cord-318057-xagh68jc 15 7 most most RBS cord-318057-xagh68jc 15 8 common common JJ cord-318057-xagh68jc 15 9 of of IN cord-318057-xagh68jc 15 10 which which WDT cord-318057-xagh68jc 15 11 were be VBD cord-318057-xagh68jc 15 12 rhinovirus rhinovirus NN cord-318057-xagh68jc 15 13 ( ( -LRB- cord-318057-xagh68jc 15 14 8.9 8.9 CD cord-318057-xagh68jc 15 15 % % NN cord-318057-xagh68jc 15 16 ( ( -LRB- cord-318057-xagh68jc 15 17 95 95 CD cord-318057-xagh68jc 15 18 % % NN cord-318057-xagh68jc 15 19 confidence confidence NN cord-318057-xagh68jc 15 20 interval interval NN cord-318057-xagh68jc 15 21 , , , cord-318057-xagh68jc 15 22 7.9 7.9 CD cord-318057-xagh68jc 15 23 - - SYM cord-318057-xagh68jc 15 24 9.9 9.9 CD cord-318057-xagh68jc 15 25 % % NN cord-318057-xagh68jc 15 26 ) ) -RRB- cord-318057-xagh68jc 15 27 ) ) -RRB- cord-318057-xagh68jc 15 28 , , , cord-318057-xagh68jc 15 29 parainfluenza parainfluenza NNP cord-318057-xagh68jc 15 30 1 1 CD cord-318057-xagh68jc 15 31 ( ( -LRB- cord-318057-xagh68jc 15 32 1.9 1.9 CD cord-318057-xagh68jc 15 33 % % NN cord-318057-xagh68jc 15 34 ( ( -LRB- cord-318057-xagh68jc 15 35 95 95 CD cord-318057-xagh68jc 15 36 % % NN cord-318057-xagh68jc 15 37 confidence confidence NN cord-318057-xagh68jc 15 38 interval interval NN cord-318057-xagh68jc 15 39 , , , cord-318057-xagh68jc 15 40 1.4 1.4 CD cord-318057-xagh68jc 15 41 - - SYM cord-318057-xagh68jc 15 42 2.4 2.4 CD cord-318057-xagh68jc 15 43 % % NN cord-318057-xagh68jc 15 44 ) ) -RRB- cord-318057-xagh68jc 15 45 ) ) -RRB- cord-318057-xagh68jc 15 46 and and CC cord-318057-xagh68jc 15 47 3 3 CD cord-318057-xagh68jc 15 48 ( ( -LRB- cord-318057-xagh68jc 15 49 4.1 4.1 CD cord-318057-xagh68jc 15 50 % % NN cord-318057-xagh68jc 15 51 ( ( -LRB- cord-318057-xagh68jc 15 52 95 95 CD cord-318057-xagh68jc 15 53 % % NN cord-318057-xagh68jc 15 54 confidence confidence NN cord-318057-xagh68jc 15 55 interval interval NN cord-318057-xagh68jc 15 56 , , , cord-318057-xagh68jc 15 57 3.3 3.3 CD cord-318057-xagh68jc 15 58 - - SYM cord-318057-xagh68jc 15 59 4.9 4.9 CD cord-318057-xagh68jc 15 60 % % NN cord-318057-xagh68jc 15 61 ) ) -RRB- cord-318057-xagh68jc 15 62 ) ) -RRB- cord-318057-xagh68jc 15 63 , , , cord-318057-xagh68jc 15 64 and and CC cord-318057-xagh68jc 15 65 adenovirus adenovirus NN cord-318057-xagh68jc 15 66 ( ( -LRB- cord-318057-xagh68jc 15 67 ( ( -LRB- cord-318057-xagh68jc 15 68 3.5 3.5 CD cord-318057-xagh68jc 15 69 % % NN cord-318057-xagh68jc 15 70 ( ( -LRB- cord-318057-xagh68jc 15 71 95 95 CD cord-318057-xagh68jc 15 72 % % NN cord-318057-xagh68jc 15 73 confidence confidence NN cord-318057-xagh68jc 15 74 interval interval NN cord-318057-xagh68jc 15 75 , , , cord-318057-xagh68jc 15 76 2.9 2.9 CD cord-318057-xagh68jc 15 77 - - SYM cord-318057-xagh68jc 15 78 4.2 4.2 CD cord-318057-xagh68jc 15 79 % % NN cord-318057-xagh68jc 15 80 ) ) -RRB- cord-318057-xagh68jc 15 81 ) ) -RRB- cord-318057-xagh68jc 15 82 . . . cord-318057-xagh68jc 16 1 CONCLUSIONS conclusion NNS cord-318057-xagh68jc 16 2 : : : cord-318057-xagh68jc 17 1 This this DT cord-318057-xagh68jc 17 2 study study NN cord-318057-xagh68jc 17 3 highlights highlight VBZ cord-318057-xagh68jc 17 4 the the DT cord-318057-xagh68jc 17 5 problems problem NNS cord-318057-xagh68jc 17 6 of of IN cord-318057-xagh68jc 17 7 using use VBG cord-318057-xagh68jc 17 8 a a DT cord-318057-xagh68jc 17 9 clinical clinical JJ cord-318057-xagh68jc 17 10 algorithm algorithm NN cord-318057-xagh68jc 17 11 to to TO cord-318057-xagh68jc 17 12 detect detect VB cord-318057-xagh68jc 17 13 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 17 14 . . . cord-318057-xagh68jc 18 1 Clinicians clinician NNS cord-318057-xagh68jc 18 2 frequently frequently RB cord-318057-xagh68jc 18 3 misdiagnosed misdiagnose VBD cord-318057-xagh68jc 18 4 common common JJ cord-318057-xagh68jc 18 5 respiratory respiratory JJ cord-318057-xagh68jc 18 6 pathogens pathogen NNS cord-318057-xagh68jc 18 7 as as IN cord-318057-xagh68jc 18 8 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 18 9 during during IN cord-318057-xagh68jc 18 10 the the DT cord-318057-xagh68jc 18 11 spring spring NN cord-318057-xagh68jc 18 12 / / SYM cord-318057-xagh68jc 18 13 summer summer NN cord-318057-xagh68jc 18 14 outbreak outbreak NN cord-318057-xagh68jc 18 15 in in IN cord-318057-xagh68jc 18 16 Scotland Scotland NNP cord-318057-xagh68jc 18 17 . . . cord-318057-xagh68jc 19 1 Many many JJ cord-318057-xagh68jc 19 2 undesirable undesirable JJ cord-318057-xagh68jc 19 3 consequences consequence NNS cord-318057-xagh68jc 19 4 would would MD cord-318057-xagh68jc 19 5 have have VB cord-318057-xagh68jc 19 6 resulted result VBN cord-318057-xagh68jc 19 7 , , , cord-318057-xagh68jc 19 8 relating relate VBG cord-318057-xagh68jc 19 9 to to IN cord-318057-xagh68jc 19 10 treatment treatment NN cord-318057-xagh68jc 19 11 , , , cord-318057-xagh68jc 19 12 infection infection NN cord-318057-xagh68jc 19 13 control control NN cord-318057-xagh68jc 19 14 , , , cord-318057-xagh68jc 19 15 and and CC cord-318057-xagh68jc 19 16 public public JJ cord-318057-xagh68jc 19 17 health health NN cord-318057-xagh68jc 19 18 surveillance surveillance NN cord-318057-xagh68jc 19 19 . . . cord-318057-xagh68jc 20 1 On on IN cord-318057-xagh68jc 20 2 April April NNP cord-318057-xagh68jc 20 3 15 15 CD cord-318057-xagh68jc 20 4 th th XX cord-318057-xagh68jc 20 5 and and CC cord-318057-xagh68jc 20 6 17 17 CD cord-318057-xagh68jc 20 7 th th XX cord-318057-xagh68jc 20 8 2009 2009 CD cord-318057-xagh68jc 20 9 , , , cord-318057-xagh68jc 20 10 a a DT cord-318057-xagh68jc 20 11 novel novel JJ cord-318057-xagh68jc 20 12 swine swine NN cord-318057-xagh68jc 20 13 - - HYPH cord-318057-xagh68jc 20 14 lineage lineage NN cord-318057-xagh68jc 20 15 influenza influenza NN cord-318057-xagh68jc 20 16 A a NN cord-318057-xagh68jc 20 17 ( ( -LRB- cord-318057-xagh68jc 20 18 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 20 19 ) ) -RRB- cord-318057-xagh68jc 20 20 infection infection NN cord-318057-xagh68jc 20 21 was be VBD cord-318057-xagh68jc 20 22 reported report VBN cord-318057-xagh68jc 20 23 to to IN cord-318057-xagh68jc 20 24 the the DT cord-318057-xagh68jc 20 25 World World NNP cord-318057-xagh68jc 20 26 Health Health NNP cord-318057-xagh68jc 20 27 Organisation Organisation NNP cord-318057-xagh68jc 20 28 ( ( -LRB- cord-318057-xagh68jc 20 29 WHO who WP cord-318057-xagh68jc 20 30 ) ) -RRB- cord-318057-xagh68jc 20 31 by by IN cord-318057-xagh68jc 20 32 the the DT cord-318057-xagh68jc 20 33 Centers Centers NNPS cord-318057-xagh68jc 20 34 for for IN cord-318057-xagh68jc 20 35 Disease Disease NNP cord-318057-xagh68jc 20 36 Control Control NNP cord-318057-xagh68jc 20 37 and and CC cord-318057-xagh68jc 20 38 Prevention Prevention NNP cord-318057-xagh68jc 20 39 ( ( -LRB- cord-318057-xagh68jc 20 40 CDC CDC NNP cord-318057-xagh68jc 20 41 ) ) -RRB- cord-318057-xagh68jc 20 42 in in IN cord-318057-xagh68jc 20 43 Atlanta Atlanta NNP cord-318057-xagh68jc 20 44 . . . cord-318057-xagh68jc 21 1 The the DT cord-318057-xagh68jc 21 2 virus virus NN cord-318057-xagh68jc 21 3 was be VBD cord-318057-xagh68jc 21 4 detected detect VBN cord-318057-xagh68jc 21 5 in in IN cord-318057-xagh68jc 21 6 two two CD cord-318057-xagh68jc 21 7 children child NNS cord-318057-xagh68jc 21 8 from from IN cord-318057-xagh68jc 21 9 adjacent adjacent JJ cord-318057-xagh68jc 21 10 counties county NNS cord-318057-xagh68jc 21 11 in in IN cord-318057-xagh68jc 21 12 southern southern JJ cord-318057-xagh68jc 21 13 California California NNP cord-318057-xagh68jc 21 14 presenting present VBG cord-318057-xagh68jc 21 15 with with IN cord-318057-xagh68jc 21 16 febrile febrile JJ cord-318057-xagh68jc 21 17 respiratory respiratory JJ cord-318057-xagh68jc 21 18 illness illness NN cord-318057-xagh68jc 21 19 [ [ -LRB- cord-318057-xagh68jc 21 20 1 1 CD cord-318057-xagh68jc 21 21 , , , cord-318057-xagh68jc 21 22 2 2 CD cord-318057-xagh68jc 21 23 ] ] -RRB- cord-318057-xagh68jc 21 24 . . . cord-318057-xagh68jc 22 1 These these DT cord-318057-xagh68jc 22 2 cases case NNS cord-318057-xagh68jc 22 3 were be VBD cord-318057-xagh68jc 22 4 not not RB cord-318057-xagh68jc 22 5 epidemiologically epidemiologically RB cord-318057-xagh68jc 22 6 linked link VBN cord-318057-xagh68jc 22 7 and and CC cord-318057-xagh68jc 22 8 neither neither DT cord-318057-xagh68jc 22 9 child child NN cord-318057-xagh68jc 22 10 had have VBD cord-318057-xagh68jc 22 11 exposure exposure NN cord-318057-xagh68jc 22 12 to to IN cord-318057-xagh68jc 22 13 swine swine NN cord-318057-xagh68jc 22 14 . . . cord-318057-xagh68jc 23 1 Subsequent subsequent JJ cord-318057-xagh68jc 23 2 phylogenetic phylogenetic JJ cord-318057-xagh68jc 23 3 characterisation characterisation NN cord-318057-xagh68jc 23 4 of of IN cord-318057-xagh68jc 23 5 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 23 6 from from IN cord-318057-xagh68jc 23 7 the the DT cord-318057-xagh68jc 23 8 U.S. U.S. NNP cord-318057-xagh68jc 23 9 index index NN cord-318057-xagh68jc 23 10 case case NN cord-318057-xagh68jc 23 11 ( ( -LRB- cord-318057-xagh68jc 23 12 A A NNP cord-318057-xagh68jc 23 13 / / SYM cord-318057-xagh68jc 23 14 California/04/2009 California/04/2009 NNP cord-318057-xagh68jc 23 15 ) ) -RRB- cord-318057-xagh68jc 23 16 showed show VBD cord-318057-xagh68jc 23 17 that that IN cord-318057-xagh68jc 23 18 the the DT cord-318057-xagh68jc 23 19 virus virus NN cord-318057-xagh68jc 23 20 had have VBD cord-318057-xagh68jc 23 21 a a DT cord-318057-xagh68jc 23 22 unique unique JJ cord-318057-xagh68jc 23 23 genome genome NN cord-318057-xagh68jc 23 24 composition composition NN cord-318057-xagh68jc 23 25 that that WDT cord-318057-xagh68jc 23 26 had have VBD cord-318057-xagh68jc 23 27 not not RB cord-318057-xagh68jc 23 28 been be VBN cord-318057-xagh68jc 23 29 previously previously RB cord-318057-xagh68jc 23 30 identified identify VBN cord-318057-xagh68jc 23 31 . . . cord-318057-xagh68jc 24 1 Six six CD cord-318057-xagh68jc 24 2 genes gene NNS cord-318057-xagh68jc 24 3 ( ( -LRB- cord-318057-xagh68jc 24 4 PB2 PB2 NNP cord-318057-xagh68jc 24 5 , , , cord-318057-xagh68jc 24 6 PB1 PB1 NNP cord-318057-xagh68jc 24 7 , , , cord-318057-xagh68jc 24 8 PA PA NNP cord-318057-xagh68jc 24 9 , , , cord-318057-xagh68jc 24 10 HA HA NNP cord-318057-xagh68jc 24 11 , , , cord-318057-xagh68jc 24 12 NP NP NNP cord-318057-xagh68jc 24 13 , , , cord-318057-xagh68jc 24 14 and and CC cord-318057-xagh68jc 24 15 NS NS NNP cord-318057-xagh68jc 24 16 ) ) -RRB- cord-318057-xagh68jc 24 17 were be VBD cord-318057-xagh68jc 24 18 similar similar JJ cord-318057-xagh68jc 24 19 to to IN cord-318057-xagh68jc 24 20 viruses virus NNS cord-318057-xagh68jc 24 21 previously previously RB cord-318057-xagh68jc 24 22 identified identify VBN cord-318057-xagh68jc 24 23 in in IN cord-318057-xagh68jc 24 24 triple triple JJ cord-318057-xagh68jc 24 25 - - HYPH cord-318057-xagh68jc 24 26 reassortant reassortant JJ cord-318057-xagh68jc 24 27 swine swine NN cord-318057-xagh68jc 24 28 influenza influenza NN cord-318057-xagh68jc 24 29 viruses virus NNS cord-318057-xagh68jc 24 30 in in IN cord-318057-xagh68jc 24 31 North north JJ cord-318057-xagh68jc 24 32 American american JJ cord-318057-xagh68jc 24 33 pigs pig NNS cord-318057-xagh68jc 24 34 . . . cord-318057-xagh68jc 25 1 The the DT cord-318057-xagh68jc 25 2 remaining remain VBG cord-318057-xagh68jc 25 3 two two CD cord-318057-xagh68jc 25 4 genes gene NNS cord-318057-xagh68jc 25 5 ( ( -LRB- cord-318057-xagh68jc 25 6 NA NA NNP cord-318057-xagh68jc 25 7 and and CC cord-318057-xagh68jc 25 8 M M NNP cord-318057-xagh68jc 25 9 ) ) -RRB- cord-318057-xagh68jc 25 10 were be VBD cord-318057-xagh68jc 25 11 derived derive VBN cord-318057-xagh68jc 25 12 from from IN cord-318057-xagh68jc 25 13 Eurasian eurasian JJ cord-318057-xagh68jc 25 14 swine swine NN cord-318057-xagh68jc 25 15 influenza influenza NN cord-318057-xagh68jc 25 16 viruses virus NNS cord-318057-xagh68jc 25 17 . . . cord-318057-xagh68jc 26 1 This this DT cord-318057-xagh68jc 26 2 particular particular JJ cord-318057-xagh68jc 26 3 gene gene NN cord-318057-xagh68jc 26 4 constellation constellation NN cord-318057-xagh68jc 26 5 had have VBD cord-318057-xagh68jc 26 6 never never RB cord-318057-xagh68jc 26 7 been be VBN cord-318057-xagh68jc 26 8 previously previously RB cord-318057-xagh68jc 26 9 identified identify VBN cord-318057-xagh68jc 26 10 in in IN cord-318057-xagh68jc 26 11 humans human NNS cord-318057-xagh68jc 26 12 or or CC cord-318057-xagh68jc 26 13 other other JJ cord-318057-xagh68jc 26 14 reservoirs reservoir NNS cord-318057-xagh68jc 26 15 . . . cord-318057-xagh68jc 27 1 Following follow VBG cord-318057-xagh68jc 27 2 the the DT cord-318057-xagh68jc 27 3 original original JJ cord-318057-xagh68jc 27 4 identification identification NN cord-318057-xagh68jc 27 5 of of IN cord-318057-xagh68jc 27 6 Influenza Influenza NNP cord-318057-xagh68jc 27 7 A/ A/ NNP cord-318057-xagh68jc 27 8 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 27 9 in in IN cord-318057-xagh68jc 27 10 the the DT cord-318057-xagh68jc 27 11 United United NNP cord-318057-xagh68jc 27 12 States States NNP cord-318057-xagh68jc 27 13 , , , cord-318057-xagh68jc 27 14 sustained sustain VBD cord-318057-xagh68jc 27 15 human human JJ cord-318057-xagh68jc 27 16 - - HYPH cord-318057-xagh68jc 27 17 tohuman tohuman NN cord-318057-xagh68jc 27 18 transmission transmission NN cord-318057-xagh68jc 27 19 was be VBD cord-318057-xagh68jc 27 20 seen see VBN cord-318057-xagh68jc 27 21 in in IN cord-318057-xagh68jc 27 22 other other JJ cord-318057-xagh68jc 27 23 countries country NNS cord-318057-xagh68jc 27 24 , , , cord-318057-xagh68jc 27 25 and and CC cord-318057-xagh68jc 27 26 on on IN cord-318057-xagh68jc 27 27 June June NNP cord-318057-xagh68jc 27 28 11 11 CD cord-318057-xagh68jc 27 29 , , , cord-318057-xagh68jc 27 30 2009 2009 CD cord-318057-xagh68jc 27 31 , , , cord-318057-xagh68jc 27 32 the the DT cord-318057-xagh68jc 27 33 WHO who WP cord-318057-xagh68jc 27 34 declared declare VBD cord-318057-xagh68jc 27 35 that that IN cord-318057-xagh68jc 27 36 the the DT cord-318057-xagh68jc 27 37 virus virus NN cord-318057-xagh68jc 27 38 was be VBD cord-318057-xagh68jc 27 39 responsible responsible JJ cord-318057-xagh68jc 27 40 for for IN cord-318057-xagh68jc 27 41 the the DT cord-318057-xagh68jc 27 42 first first JJ cord-318057-xagh68jc 27 43 influenza influenza NN cord-318057-xagh68jc 27 44 pandemic pandemic NN cord-318057-xagh68jc 27 45 of of IN cord-318057-xagh68jc 27 46 the the DT cord-318057-xagh68jc 27 47 21st 21st JJ cord-318057-xagh68jc 27 48 century century NN cord-318057-xagh68jc 27 49 [ [ -LRB- cord-318057-xagh68jc 27 50 3 3 CD cord-318057-xagh68jc 27 51 ] ] -RRB- cord-318057-xagh68jc 27 52 . . . cord-318057-xagh68jc 28 1 The the DT cord-318057-xagh68jc 28 2 first first JJ cord-318057-xagh68jc 28 3 cases case NNS cord-318057-xagh68jc 28 4 of of IN cord-318057-xagh68jc 28 5 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 28 6 in in IN cord-318057-xagh68jc 28 7 Scotland Scotland NNP cord-318057-xagh68jc 28 8 were be VBD cord-318057-xagh68jc 28 9 detected detect VBN cord-318057-xagh68jc 28 10 at at IN cord-318057-xagh68jc 28 11 the the DT cord-318057-xagh68jc 28 12 end end NN cord-318057-xagh68jc 28 13 of of IN cord-318057-xagh68jc 28 14 April April NNP cord-318057-xagh68jc 28 15 2009 2009 CD cord-318057-xagh68jc 28 16 in in IN cord-318057-xagh68jc 28 17 a a DT cord-318057-xagh68jc 28 18 couple couple NN cord-318057-xagh68jc 28 19 returning return VBG cord-318057-xagh68jc 28 20 from from IN cord-318057-xagh68jc 28 21 their -PRON- PRP$ cord-318057-xagh68jc 28 22 honeymoon honeymoon NN cord-318057-xagh68jc 28 23 in in IN cord-318057-xagh68jc 28 24 Mexico Mexico NNP cord-318057-xagh68jc 28 25 [ [ -LRB- cord-318057-xagh68jc 28 26 4 4 CD cord-318057-xagh68jc 28 27 , , , cord-318057-xagh68jc 28 28 5 5 CD cord-318057-xagh68jc 28 29 ] ] -RRB- cord-318057-xagh68jc 28 30 . . . cord-318057-xagh68jc 29 1 The the DT cord-318057-xagh68jc 29 2 initial initial JJ cord-318057-xagh68jc 29 3 public public JJ cord-318057-xagh68jc 29 4 health health NN cord-318057-xagh68jc 29 5 response response NN cord-318057-xagh68jc 29 6 to to IN cord-318057-xagh68jc 29 7 the the DT cord-318057-xagh68jc 29 8 outbreak outbreak NN cord-318057-xagh68jc 29 9 was be VBD cord-318057-xagh68jc 29 10 a a DT cord-318057-xagh68jc 29 11 containment containment NN cord-318057-xagh68jc 29 12 exercise exercise NN cord-318057-xagh68jc 29 13 aimed aim VBN cord-318057-xagh68jc 29 14 at at IN cord-318057-xagh68jc 29 15 preventing prevent VBG cord-318057-xagh68jc 29 16 the the DT cord-318057-xagh68jc 29 17 spread spread NN cord-318057-xagh68jc 29 18 of of IN cord-318057-xagh68jc 29 19 infection infection NN cord-318057-xagh68jc 29 20 , , , cord-318057-xagh68jc 29 21 detecting detect VBG cord-318057-xagh68jc 29 22 cases case NNS cord-318057-xagh68jc 29 23 and and CC cord-318057-xagh68jc 29 24 taking take VBG cord-318057-xagh68jc 29 25 action action NN cord-318057-xagh68jc 29 26 to to TO cord-318057-xagh68jc 29 27 prevent prevent VB cord-318057-xagh68jc 29 28 these these DT cord-318057-xagh68jc 29 29 cases case NNS cord-318057-xagh68jc 29 30 from from IN cord-318057-xagh68jc 29 31 infecting infect VBG cord-318057-xagh68jc 29 32 others other NNS cord-318057-xagh68jc 29 33 [ [ -LRB- cord-318057-xagh68jc 29 34 6 6 CD cord-318057-xagh68jc 29 35 ] ] -RRB- cord-318057-xagh68jc 29 36 . . . cord-318057-xagh68jc 30 1 The the DT cord-318057-xagh68jc 30 2 exercise exercise NN cord-318057-xagh68jc 30 3 was be VBD cord-318057-xagh68jc 30 4 initially initially RB cord-318057-xagh68jc 30 5 based base VBN cord-318057-xagh68jc 30 6 on on IN cord-318057-xagh68jc 30 7 clinical clinical JJ cord-318057-xagh68jc 30 8 and and CC cord-318057-xagh68jc 30 9 epidemiological epidemiological JJ cord-318057-xagh68jc 30 10 criteria criterion NNS cord-318057-xagh68jc 30 11 ( ( -LRB- cord-318057-xagh68jc 30 12 table table NN cord-318057-xagh68jc 30 13 1 1 CD cord-318057-xagh68jc 30 14 ) ) -RRB- cord-318057-xagh68jc 30 15 . . . cord-318057-xagh68jc 31 1 Patients patient NNS cord-318057-xagh68jc 31 2 who who WP cord-318057-xagh68jc 31 3 met meet VBD cord-318057-xagh68jc 31 4 these these DT cord-318057-xagh68jc 31 5 criteria criterion NNS cord-318057-xagh68jc 31 6 were be VBD cord-318057-xagh68jc 31 7 immediately immediately RB cord-318057-xagh68jc 31 8 given give VBN cord-318057-xagh68jc 31 9 treatment treatment NN cord-318057-xagh68jc 31 10 and and CC cord-318057-xagh68jc 31 11 isolated isolate VBN cord-318057-xagh68jc 31 12 while while IN cord-318057-xagh68jc 31 13 a a DT cord-318057-xagh68jc 31 14 rapid rapid JJ cord-318057-xagh68jc 31 15 real real JJ cord-318057-xagh68jc 31 16 time time NN cord-318057-xagh68jc 31 17 reverse reverse NN cord-318057-xagh68jc 31 18 transcriptase transcriptase NN cord-318057-xagh68jc 31 19 polymerase polymerase NN cord-318057-xagh68jc 31 20 chain chain NN cord-318057-xagh68jc 31 21 reaction reaction NN cord-318057-xagh68jc 31 22 ( ( -LRB- cord-318057-xagh68jc 31 23 rtRT rtRT NNP cord-318057-xagh68jc 31 24 - - HYPH cord-318057-xagh68jc 31 25 PCR PCR NNP cord-318057-xagh68jc 31 26 ) ) -RRB- cord-318057-xagh68jc 31 27 for for IN cord-318057-xagh68jc 31 28 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 31 29 was be VBD cord-318057-xagh68jc 31 30 initiated initiate VBN cord-318057-xagh68jc 31 31 . . . cord-318057-xagh68jc 32 1 Contact contact NN cord-318057-xagh68jc 32 2 tracing tracing NN cord-318057-xagh68jc 32 3 was be VBD cord-318057-xagh68jc 32 4 undertaken undertake VBN cord-318057-xagh68jc 32 5 in in IN cord-318057-xagh68jc 32 6 order order NN cord-318057-xagh68jc 32 7 to to TO cord-318057-xagh68jc 32 8 treat treat VB cord-318057-xagh68jc 32 9 those those DT cord-318057-xagh68jc 32 10 who who WP cord-318057-xagh68jc 32 11 had have VBD cord-318057-xagh68jc 32 12 been be VBN cord-318057-xagh68jc 32 13 in in IN cord-318057-xagh68jc 32 14 contact contact NN cord-318057-xagh68jc 32 15 with with IN cord-318057-xagh68jc 32 16 confirmed confirmed JJ cord-318057-xagh68jc 32 17 cases case NNS cord-318057-xagh68jc 32 18 . . . cord-318057-xagh68jc 33 1 Soon soon RB cord-318057-xagh68jc 33 2 after after IN cord-318057-xagh68jc 33 3 the the DT cord-318057-xagh68jc 33 4 first first JJ cord-318057-xagh68jc 33 5 detections detection NNS cord-318057-xagh68jc 33 6 , , , cord-318057-xagh68jc 33 7 person person NN cord-318057-xagh68jc 33 8 to to IN cord-318057-xagh68jc 33 9 person person NN cord-318057-xagh68jc 33 10 transmission transmission NN cord-318057-xagh68jc 33 11 was be VBD cord-318057-xagh68jc 33 12 confirmed confirm VBN cord-318057-xagh68jc 33 13 as as IN cord-318057-xagh68jc 33 14 having have VBG cord-318057-xagh68jc 33 15 occurred occur VBN cord-318057-xagh68jc 33 16 in in IN cord-318057-xagh68jc 33 17 Scotland Scotland NNP cord-318057-xagh68jc 33 18 . . . cord-318057-xagh68jc 34 1 Consequently consequently RB cord-318057-xagh68jc 34 2 , , , cord-318057-xagh68jc 34 3 the the DT cord-318057-xagh68jc 34 4 epidemiological epidemiological JJ cord-318057-xagh68jc 34 5 criteria criterion NNS cord-318057-xagh68jc 34 6 were be VBD cord-318057-xagh68jc 34 7 no no RB cord-318057-xagh68jc 34 8 longer long RBR cord-318057-xagh68jc 34 9 useful useful JJ cord-318057-xagh68jc 34 10 and and CC cord-318057-xagh68jc 34 11 the the DT cord-318057-xagh68jc 34 12 containment containment NN cord-318057-xagh68jc 34 13 exercise exercise NN cord-318057-xagh68jc 34 14 was be VBD cord-318057-xagh68jc 34 15 then then RB cord-318057-xagh68jc 34 16 based base VBN cord-318057-xagh68jc 34 17 on on IN cord-318057-xagh68jc 34 18 clinical clinical JJ cord-318057-xagh68jc 34 19 criteria criterion NNS cord-318057-xagh68jc 34 20 only only RB cord-318057-xagh68jc 34 21 . . . cord-318057-xagh68jc 35 1 Testing testing NN cord-318057-xagh68jc 35 2 continued continue VBD cord-318057-xagh68jc 35 3 to to TO cord-318057-xagh68jc 35 4 be be VB cord-318057-xagh68jc 35 5 carried carry VBN cord-318057-xagh68jc 35 6 out out RP cord-318057-xagh68jc 35 7 during during IN cord-318057-xagh68jc 35 8 this this DT cord-318057-xagh68jc 35 9 period period NN cord-318057-xagh68jc 35 10 . . . cord-318057-xagh68jc 36 1 During during IN cord-318057-xagh68jc 36 2 the the DT cord-318057-xagh68jc 36 3 outbreak outbreak NN cord-318057-xagh68jc 36 4 period period NN cord-318057-xagh68jc 36 5 ( ( -LRB- cord-318057-xagh68jc 36 6 April April NNP cord-318057-xagh68jc 36 7 - - HYPH cord-318057-xagh68jc 36 8 July July NNP cord-318057-xagh68jc 36 9 2009 2009 CD cord-318057-xagh68jc 36 10 ) ) -RRB- cord-318057-xagh68jc 37 1 the the DT cord-318057-xagh68jc 37 2 West West NNP cord-318057-xagh68jc 37 3 of of IN cord-318057-xagh68jc 37 4 Scotland Scotland NNP cord-318057-xagh68jc 37 5 Specialist Specialist NNP cord-318057-xagh68jc 37 6 Virology Virology NNP cord-318057-xagh68jc 37 7 Centre Centre NNP cord-318057-xagh68jc 37 8 ( ( -LRB- cord-318057-xagh68jc 37 9 WoSSVC WoSSVC NNP cord-318057-xagh68jc 37 10 ) ) -RRB- cord-318057-xagh68jc 37 11 tested test VBD cord-318057-xagh68jc 37 12 16 16 CD cord-318057-xagh68jc 37 13 264 264 CD cord-318057-xagh68jc 37 14 clinical clinical JJ cord-318057-xagh68jc 37 15 samples sample NNS cord-318057-xagh68jc 37 16 for for IN cord-318057-xagh68jc 37 17 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 37 18 ( ( -LRB- cord-318057-xagh68jc 37 19 Figure figure NN cord-318057-xagh68jc 37 20 1 1 CD cord-318057-xagh68jc 37 21 ) ) -RRB- cord-318057-xagh68jc 37 22 . . . cord-318057-xagh68jc 38 1 Of of IN cord-318057-xagh68jc 38 2 these these DT cord-318057-xagh68jc 38 3 , , , cord-318057-xagh68jc 38 4 only only RB cord-318057-xagh68jc 38 5 1516 1516 CD cord-318057-xagh68jc 38 6 were be VBD cord-318057-xagh68jc 38 7 positive positive JJ cord-318057-xagh68jc 38 8 ( ( -LRB- cord-318057-xagh68jc 38 9 9 9 CD cord-318057-xagh68jc 38 10 % % NN cord-318057-xagh68jc 38 11 overall overall JJ cord-318057-xagh68jc 38 12 for for IN cord-318057-xagh68jc 38 13 the the DT cord-318057-xagh68jc 38 14 period period NN cord-318057-xagh68jc 38 15 of of IN cord-318057-xagh68jc 38 16 April April NNP cord-318057-xagh68jc 38 17 - - HYPH cord-318057-xagh68jc 38 18 July July NNP cord-318057-xagh68jc 38 19 ; ; : cord-318057-xagh68jc 38 20 range range NNP cord-318057-xagh68jc 38 21 5 5 CD cord-318057-xagh68jc 38 22 - - SYM cord-318057-xagh68jc 38 23 10 10 CD cord-318057-xagh68jc 38 24 % % NN cord-318057-xagh68jc 38 25 per per IN cord-318057-xagh68jc 38 26 month month NN cord-318057-xagh68jc 38 27 ) ) -RRB- cord-318057-xagh68jc 38 28 . . . cord-318057-xagh68jc 39 1 Consequently consequently RB cord-318057-xagh68jc 39 2 , , , cord-318057-xagh68jc 39 3 the the DT cord-318057-xagh68jc 39 4 clinical clinical JJ cord-318057-xagh68jc 39 5 diagnosis diagnosis NN cord-318057-xagh68jc 39 6 was be VBD cord-318057-xagh68jc 39 7 found find VBN cord-318057-xagh68jc 39 8 to to TO cord-318057-xagh68jc 39 9 be be VB cord-318057-xagh68jc 39 10 wrong wrong JJ cord-318057-xagh68jc 39 11 in in IN cord-318057-xagh68jc 39 12 the the DT cord-318057-xagh68jc 39 13 majority majority NN cord-318057-xagh68jc 39 14 of of IN cord-318057-xagh68jc 39 15 cases case NNS cord-318057-xagh68jc 39 16 . . . cord-318057-xagh68jc 40 1 A a DT cord-318057-xagh68jc 40 2 large large JJ cord-318057-xagh68jc 40 3 number number NN cord-318057-xagh68jc 40 4 of of IN cord-318057-xagh68jc 40 5 viral viral JJ cord-318057-xagh68jc 40 6 infections infection NNS cord-318057-xagh68jc 40 7 , , , cord-318057-xagh68jc 40 8 drugs drug NNS cord-318057-xagh68jc 40 9 and and CC cord-318057-xagh68jc 40 10 other other JJ cord-318057-xagh68jc 40 11 diseases disease NNS cord-318057-xagh68jc 40 12 can can MD cord-318057-xagh68jc 40 13 cause cause VB cord-318057-xagh68jc 40 14 disease disease NN cord-318057-xagh68jc 40 15 presentations presentation NNS cord-318057-xagh68jc 40 16 similar similar JJ cord-318057-xagh68jc 40 17 to to IN cord-318057-xagh68jc 40 18 those those DT cord-318057-xagh68jc 40 19 presented present VBN cord-318057-xagh68jc 40 20 in in IN cord-318057-xagh68jc 40 21 Table Table NNP cord-318057-xagh68jc 40 22 1 1 CD cord-318057-xagh68jc 40 23 . . . cord-318057-xagh68jc 41 1 This this DT cord-318057-xagh68jc 41 2 is be VBZ cord-318057-xagh68jc 41 3 especially especially RB cord-318057-xagh68jc 41 4 true true JJ cord-318057-xagh68jc 41 5 for for IN cord-318057-xagh68jc 41 6 respiratory respiratory JJ cord-318057-xagh68jc 41 7 pathogens pathogen NNS cord-318057-xagh68jc 41 8 . . . cord-318057-xagh68jc 42 1 The the DT cord-318057-xagh68jc 42 2 present present JJ cord-318057-xagh68jc 42 3 study study NN cord-318057-xagh68jc 42 4 sought seek VBD cord-318057-xagh68jc 42 5 to to TO cord-318057-xagh68jc 42 6 determine determine VB cord-318057-xagh68jc 42 7 what what WP cord-318057-xagh68jc 42 8 respiratory respiratory JJ cord-318057-xagh68jc 42 9 pathogens pathogen NNS cord-318057-xagh68jc 42 10 were be VBD cord-318057-xagh68jc 42 11 diagnosed diagnose VBN cord-318057-xagh68jc 42 12 as as IN cord-318057-xagh68jc 42 13 cases case NNS cord-318057-xagh68jc 42 14 of of IN cord-318057-xagh68jc 42 15 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 42 16 during during IN cord-318057-xagh68jc 42 17 the the DT cord-318057-xagh68jc 42 18 containment containment NN cord-318057-xagh68jc 42 19 phase phase NN cord-318057-xagh68jc 42 20 . . . cord-318057-xagh68jc 43 1 Background background NN cord-318057-xagh68jc 43 2 to to IN cord-318057-xagh68jc 43 3 the the DT cord-318057-xagh68jc 43 4 respiratory respiratory JJ cord-318057-xagh68jc 43 5 service service NN cord-318057-xagh68jc 43 6 in in IN cord-318057-xagh68jc 43 7 place place NN cord-318057-xagh68jc 43 8 during during IN cord-318057-xagh68jc 43 9 April April NNP cord-318057-xagh68jc 43 10 - - HYPH cord-318057-xagh68jc 43 11 July July NNP cord-318057-xagh68jc 43 12 2009 2009 CD cord-318057-xagh68jc 44 1 During during IN cord-318057-xagh68jc 44 2 April April NNP cord-318057-xagh68jc 44 3 - - HYPH cord-318057-xagh68jc 44 4 July July NNP cord-318057-xagh68jc 44 5 2009 2009 CD cord-318057-xagh68jc 44 6 all all DT cord-318057-xagh68jc 44 7 respiratory respiratory JJ cord-318057-xagh68jc 44 8 samples sample NNS cord-318057-xagh68jc 44 9 submitted submit VBN cord-318057-xagh68jc 44 10 from from IN cord-318057-xagh68jc 44 11 patients patient NNS cord-318057-xagh68jc 44 12 with with IN cord-318057-xagh68jc 44 13 a a DT cord-318057-xagh68jc 44 14 clinical clinical JJ cord-318057-xagh68jc 44 15 diagnosis diagnosis NN cord-318057-xagh68jc 44 16 of of IN cord-318057-xagh68jc 44 17 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 44 18 ( ( -LRB- cord-318057-xagh68jc 44 19 as as IN cord-318057-xagh68jc 44 20 stated state VBN cord-318057-xagh68jc 44 21 on on IN cord-318057-xagh68jc 44 22 the the DT cord-318057-xagh68jc 44 23 specimen specimen JJ cord-318057-xagh68jc 44 24 request request NN cord-318057-xagh68jc 44 25 form form NN cord-318057-xagh68jc 44 26 ) ) -RRB- cord-318057-xagh68jc 44 27 , , , cord-318057-xagh68jc 44 28 were be VBD cord-318057-xagh68jc 44 29 initially initially RB cord-318057-xagh68jc 44 30 tested test VBN cord-318057-xagh68jc 44 31 using use VBG cord-318057-xagh68jc 44 32 a a DT cord-318057-xagh68jc 44 33 universal universal JJ cord-318057-xagh68jc 44 34 influenza influenza NN cord-318057-xagh68jc 44 35 A a DT cord-318057-xagh68jc 44 36 real real JJ cord-318057-xagh68jc 44 37 time time NN cord-318057-xagh68jc 44 38 rtRT rtRT NNP cord-318057-xagh68jc 44 39 - - HYPH cord-318057-xagh68jc 44 40 PCR PCR NNP cord-318057-xagh68jc 44 41 assay assay NN cord-318057-xagh68jc 44 42 and and CC cord-318057-xagh68jc 44 43 a a DT cord-318057-xagh68jc 44 44 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 44 45 specific specific JJ cord-318057-xagh68jc 44 46 real real JJ cord-318057-xagh68jc 44 47 time time NN cord-318057-xagh68jc 44 48 rtRT rtRT NNP cord-318057-xagh68jc 44 49 - - HYPH cord-318057-xagh68jc 44 50 PCR PCR NNP cord-318057-xagh68jc 44 51 assay assay NN cord-318057-xagh68jc 44 52 [ [ -LRB- cord-318057-xagh68jc 44 53 7 7 CD cord-318057-xagh68jc 44 54 ] ] -RRB- cord-318057-xagh68jc 44 55 . . . cord-318057-xagh68jc 45 1 If if IN cord-318057-xagh68jc 45 2 the the DT cord-318057-xagh68jc 45 3 sample sample NN cord-318057-xagh68jc 45 4 was be VBD cord-318057-xagh68jc 45 5 negative negative JJ cord-318057-xagh68jc 45 6 on on IN cord-318057-xagh68jc 45 7 these these DT cord-318057-xagh68jc 45 8 tests test NNS cord-318057-xagh68jc 45 9 and and CC cord-318057-xagh68jc 45 10 was be VBD cord-318057-xagh68jc 45 11 from from IN cord-318057-xagh68jc 45 12 a a DT cord-318057-xagh68jc 45 13 hospitalised hospitalise VBN cord-318057-xagh68jc 45 14 patient patient NN cord-318057-xagh68jc 45 15 , , , cord-318057-xagh68jc 45 16 a a DT cord-318057-xagh68jc 45 17 patient patient NN cord-318057-xagh68jc 45 18 deemed deem VBN cord-318057-xagh68jc 45 19 at at IN cord-318057-xagh68jc 45 20 risk risk NN cord-318057-xagh68jc 45 21 of of IN cord-318057-xagh68jc 45 22 severe severe JJ cord-318057-xagh68jc 45 23 respiratory respiratory JJ cord-318057-xagh68jc 45 24 infection infection NN cord-318057-xagh68jc 46 1 ( ( -LRB- cord-318057-xagh68jc 46 2 e.g. e.g. RB cord-318057-xagh68jc 46 3 an an DT cord-318057-xagh68jc 46 4 immunocompromised immunocompromised JJ cord-318057-xagh68jc 46 5 or or CC cord-318057-xagh68jc 46 6 a a DT cord-318057-xagh68jc 46 7 pregnant pregnant JJ cord-318057-xagh68jc 46 8 patient patient NN cord-318057-xagh68jc 46 9 ) ) -RRB- cord-318057-xagh68jc 46 10 , , , cord-318057-xagh68jc 46 11 or or CC cord-318057-xagh68jc 46 12 a a DT cord-318057-xagh68jc 46 13 patient patient NN cord-318057-xagh68jc 46 14 attending attend VBG cord-318057-xagh68jc 46 15 GP GP NNP cord-318057-xagh68jc 46 16 services service NNS cord-318057-xagh68jc 46 17 taking take VBG cord-318057-xagh68jc 46 18 part part NN cord-318057-xagh68jc 46 19 in in IN cord-318057-xagh68jc 46 20 local local JJ cord-318057-xagh68jc 46 21 or or CC cord-318057-xagh68jc 46 22 national national JJ cord-318057-xagh68jc 46 23 surveillance surveillance NN cord-318057-xagh68jc 46 24 schemes scheme NNS cord-318057-xagh68jc 46 25 , , , cord-318057-xagh68jc 46 26 a a DT cord-318057-xagh68jc 46 27 full full JJ cord-318057-xagh68jc 46 28 respiratory respiratory JJ cord-318057-xagh68jc 46 29 screen screen NN cord-318057-xagh68jc 46 30 was be VBD cord-318057-xagh68jc 46 31 carried carry VBN cord-318057-xagh68jc 46 32 out out RP cord-318057-xagh68jc 46 33 ( ( -LRB- cord-318057-xagh68jc 46 34 see see VB cord-318057-xagh68jc 46 35 below below RB cord-318057-xagh68jc 46 36 for for IN cord-318057-xagh68jc 46 37 details detail NNS cord-318057-xagh68jc 46 38 regarding regard VBG cord-318057-xagh68jc 46 39 the the DT cord-318057-xagh68jc 46 40 full full JJ cord-318057-xagh68jc 46 41 respiratory respiratory JJ cord-318057-xagh68jc 46 42 screen screen NN cord-318057-xagh68jc 46 43 ) ) -RRB- cord-318057-xagh68jc 46 44 . . . cord-318057-xagh68jc 47 1 Note note VB cord-318057-xagh68jc 47 2 that that IN cord-318057-xagh68jc 47 3 this this DT cord-318057-xagh68jc 47 4 information information NN cord-318057-xagh68jc 47 5 was be VBD cord-318057-xagh68jc 47 6 derived derive VBN cord-318057-xagh68jc 47 7 from from IN cord-318057-xagh68jc 47 8 the the DT cord-318057-xagh68jc 47 9 sample sample NN cord-318057-xagh68jc 47 10 request request NN cord-318057-xagh68jc 47 11 form form NN cord-318057-xagh68jc 47 12 . . . cord-318057-xagh68jc 48 1 With with IN cord-318057-xagh68jc 48 2 regard regard NN cord-318057-xagh68jc 48 3 to to IN cord-318057-xagh68jc 48 4 ( ( -LRB- cord-318057-xagh68jc 48 5 i i NN cord-318057-xagh68jc 48 6 ) ) -RRB- cord-318057-xagh68jc 48 7 samples sample VBZ cord-318057-xagh68jc 48 8 from from IN cord-318057-xagh68jc 48 9 GP GP NNP cord-318057-xagh68jc 48 10 services service NNS cord-318057-xagh68jc 48 11 not not RB cord-318057-xagh68jc 48 12 taking take VBG cord-318057-xagh68jc 48 13 part part NN cord-318057-xagh68jc 48 14 in in IN cord-318057-xagh68jc 48 15 the the DT cord-318057-xagh68jc 48 16 surveillance surveillance NN cord-318057-xagh68jc 48 17 schemes scheme NNS cord-318057-xagh68jc 48 18 mentioned mention VBN cord-318057-xagh68jc 48 19 above above RB cord-318057-xagh68jc 48 20 , , , cord-318057-xagh68jc 48 21 ( ( -LRB- cord-318057-xagh68jc 48 22 ii ii NN cord-318057-xagh68jc 48 23 ) ) -RRB- cord-318057-xagh68jc 48 24 follow follow VB cord-318057-xagh68jc 48 25 - - HYPH cord-318057-xagh68jc 48 26 up up NN cord-318057-xagh68jc 48 27 samples sample NNS cord-318057-xagh68jc 48 28 from from IN cord-318057-xagh68jc 48 29 known know VBN cord-318057-xagh68jc 48 30 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 48 31 positive positive JJ cord-318057-xagh68jc 48 32 patients patient NNS cord-318057-xagh68jc 48 33 , , , cord-318057-xagh68jc 48 34 and and CC cord-318057-xagh68jc 48 35 ( ( -LRB- cord-318057-xagh68jc 48 36 iii iii NN cord-318057-xagh68jc 48 37 ) ) -RRB- cord-318057-xagh68jc 48 38 samples sample NNS cord-318057-xagh68jc 48 39 from from IN cord-318057-xagh68jc 48 40 patients patient NNS cord-318057-xagh68jc 48 41 with with IN cord-318057-xagh68jc 48 42 no no DT cord-318057-xagh68jc 48 43 clinical clinical JJ cord-318057-xagh68jc 48 44 / / SYM cord-318057-xagh68jc 48 45 setting set VBG cord-318057-xagh68jc 48 46 details detail NNS cord-318057-xagh68jc 48 47 , , , cord-318057-xagh68jc 48 48 only only RB cord-318057-xagh68jc 48 49 the the DT cord-318057-xagh68jc 48 50 initial initial JJ cord-318057-xagh68jc 48 51 screening screening NN cord-318057-xagh68jc 48 52 test test NN cord-318057-xagh68jc 48 53 was be VBD cord-318057-xagh68jc 48 54 conducted conduct VBN cord-318057-xagh68jc 48 55 . . . cord-318057-xagh68jc 49 1 To to TO cord-318057-xagh68jc 49 2 determine determine VB cord-318057-xagh68jc 49 3 which which WDT cord-318057-xagh68jc 49 4 respiratory respiratory JJ cord-318057-xagh68jc 49 5 pathogens pathogen NNS cord-318057-xagh68jc 49 6 had have VBD cord-318057-xagh68jc 49 7 been be VBN cord-318057-xagh68jc 49 8 misdiagnosed misdiagnose VBN cord-318057-xagh68jc 49 9 as as IN cord-318057-xagh68jc 49 10 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 49 11 , , , cord-318057-xagh68jc 49 12 we -PRON- PRP cord-318057-xagh68jc 49 13 examined examine VBD cord-318057-xagh68jc 49 14 the the DT cord-318057-xagh68jc 49 15 results result NNS cord-318057-xagh68jc 49 16 of of IN cord-318057-xagh68jc 49 17 3247 3247 CD cord-318057-xagh68jc 49 18 samples sample NNS cord-318057-xagh68jc 49 19 which which WDT cord-318057-xagh68jc 49 20 had have VBD cord-318057-xagh68jc 49 21 been be VBN cord-318057-xagh68jc 49 22 given give VBN cord-318057-xagh68jc 49 23 a a DT cord-318057-xagh68jc 49 24 full full JJ cord-318057-xagh68jc 49 25 respiratory respiratory JJ cord-318057-xagh68jc 49 26 screen screen NN cord-318057-xagh68jc 49 27 during during IN cord-318057-xagh68jc 49 28 the the DT cord-318057-xagh68jc 49 29 period period NN cord-318057-xagh68jc 49 30 April April NNP cord-318057-xagh68jc 49 31 - - HYPH cord-318057-xagh68jc 49 32 July July NNP cord-318057-xagh68jc 49 33 2009 2009 CD cord-318057-xagh68jc 49 34 . . . cord-318057-xagh68jc 50 1 All all DT cord-318057-xagh68jc 50 2 had have VBD cord-318057-xagh68jc 50 3 been be VBN cord-318057-xagh68jc 50 4 clinically clinically RB cord-318057-xagh68jc 50 5 diagnosed diagnose VBN cord-318057-xagh68jc 50 6 as as IN cord-318057-xagh68jc 50 7 having have VBG cord-318057-xagh68jc 50 8 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 50 9 , , , cord-318057-xagh68jc 50 10 and and CC cord-318057-xagh68jc 50 11 all all DT cord-318057-xagh68jc 50 12 were be VBD cord-318057-xagh68jc 50 13 found find VBN cord-318057-xagh68jc 50 14 to to TO cord-318057-xagh68jc 50 15 be be VB cord-318057-xagh68jc 50 16 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 50 17 negative negative JJ cord-318057-xagh68jc 50 18 . . . cord-318057-xagh68jc 51 1 The the DT cord-318057-xagh68jc 51 2 samples sample NNS cord-318057-xagh68jc 51 3 submitted submit VBN cord-318057-xagh68jc 51 4 included include VBN cord-318057-xagh68jc 51 5 gargles gargle NNS cord-318057-xagh68jc 51 6 , , , cord-318057-xagh68jc 51 7 throat throat NN cord-318057-xagh68jc 51 8 swabs swab NNS cord-318057-xagh68jc 51 9 , , , cord-318057-xagh68jc 51 10 nasal nasal NN cord-318057-xagh68jc 51 11 swabs swab NNS cord-318057-xagh68jc 51 12 , , , cord-318057-xagh68jc 51 13 nasopharyngeal nasopharyngeal JJ cord-318057-xagh68jc 51 14 aspirates aspirate NNS cord-318057-xagh68jc 51 15 , , , cord-318057-xagh68jc 51 16 sputums sputum NNS cord-318057-xagh68jc 51 17 , , , cord-318057-xagh68jc 51 18 and and CC cord-318057-xagh68jc 51 19 endotracheal endotracheal NN cord-318057-xagh68jc 51 20 secretions secretion NNS cord-318057-xagh68jc 51 21 . . . cord-318057-xagh68jc 52 1 The the DT cord-318057-xagh68jc 52 2 number number NN cord-318057-xagh68jc 52 3 collected collect VBD cord-318057-xagh68jc 52 4 each each DT cord-318057-xagh68jc 52 5 month month NN cord-318057-xagh68jc 52 6 and and CC cord-318057-xagh68jc 52 7 the the DT cord-318057-xagh68jc 52 8 age age NN cord-318057-xagh68jc 52 9 of of IN cord-318057-xagh68jc 52 10 the the DT cord-318057-xagh68jc 52 11 patients patient NNS cord-318057-xagh68jc 52 12 are be VBP cord-318057-xagh68jc 52 13 shown show VBN cord-318057-xagh68jc 52 14 in in IN cord-318057-xagh68jc 52 15 Table Table NNP cord-318057-xagh68jc 52 16 2 2 CD cord-318057-xagh68jc 52 17 . . . cord-318057-xagh68jc 53 1 Binomial Binomial NNP cord-318057-xagh68jc 53 2 95 95 CD cord-318057-xagh68jc 53 3 % % NN cord-318057-xagh68jc 53 4 confidence confidence NN cord-318057-xagh68jc 53 5 intervals interval NNS cord-318057-xagh68jc 53 6 are be VBP cord-318057-xagh68jc 53 7 shown show VBN cord-318057-xagh68jc 53 8 for for IN cord-318057-xagh68jc 53 9 each each DT cord-318057-xagh68jc 53 10 age age NN cord-318057-xagh68jc 53 11 group group NN cord-318057-xagh68jc 53 12 . . . cord-318057-xagh68jc 54 1 Total total JJ cord-318057-xagh68jc 54 2 nucleic nucleic JJ cord-318057-xagh68jc 54 3 acid acid NN cord-318057-xagh68jc 54 4 was be VBD cord-318057-xagh68jc 54 5 extracted extract VBN cord-318057-xagh68jc 54 6 from from IN cord-318057-xagh68jc 54 7 respiratory respiratory JJ cord-318057-xagh68jc 54 8 specimens specimen NNS cord-318057-xagh68jc 54 9 using use VBG cord-318057-xagh68jc 54 10 QIAamp QIAamp NNP cord-318057-xagh68jc 54 11 Viral Viral NNP cord-318057-xagh68jc 54 12 RNA RNA NNP cord-318057-xagh68jc 54 13 kit kit NN cord-318057-xagh68jc 54 14 ( ( -LRB- cord-318057-xagh68jc 54 15 Qiagen Qiagen NNP cord-318057-xagh68jc 54 16 , , , cord-318057-xagh68jc 54 17 Crawley Crawley NNP cord-318057-xagh68jc 54 18 , , , cord-318057-xagh68jc 54 19 United United NNP cord-318057-xagh68jc 54 20 Kingdom Kingdom NNP cord-318057-xagh68jc 54 21 ) ) -RRB- cord-318057-xagh68jc 54 22 according accord VBG cord-318057-xagh68jc 54 23 to to IN cord-318057-xagh68jc 54 24 the the DT cord-318057-xagh68jc 54 25 manufacturer manufacturer NN cord-318057-xagh68jc 54 26 's 's POS cord-318057-xagh68jc 54 27 instructions instruction NNS cord-318057-xagh68jc 54 28 . . . cord-318057-xagh68jc 55 1 Real real JJ cord-318057-xagh68jc 55 2 - - HYPH cord-318057-xagh68jc 55 3 time time NN cord-318057-xagh68jc 55 4 RT RT NNP cord-318057-xagh68jc 55 5 - - HYPH cord-318057-xagh68jc 55 6 PCR PCR NNP cord-318057-xagh68jc 55 7 was be VBD cord-318057-xagh68jc 55 8 carried carry VBN cord-318057-xagh68jc 55 9 out out RP cord-318057-xagh68jc 55 10 in in IN cord-318057-xagh68jc 55 11 order order NN cord-318057-xagh68jc 55 12 to to TO cord-318057-xagh68jc 55 13 detect detect VB cord-318057-xagh68jc 55 14 influenza influenza NN cord-318057-xagh68jc 55 15 A a NN cord-318057-xagh68jc 55 16 ( ( -LRB- cord-318057-xagh68jc 55 17 a a DT cord-318057-xagh68jc 55 18 generic generic JJ cord-318057-xagh68jc 55 19 assay assay NN cord-318057-xagh68jc 55 20 and and CC cord-318057-xagh68jc 55 21 a a DT cord-318057-xagh68jc 55 22 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 55 23 specific specific JJ cord-318057-xagh68jc 55 24 assay assay NN cord-318057-xagh68jc 55 25 [ [ -LRB- cord-318057-xagh68jc 55 26 7 7 CD cord-318057-xagh68jc 55 27 ] ] -RRB- cord-318057-xagh68jc 55 28 ) ) -RRB- cord-318057-xagh68jc 55 29 , , , cord-318057-xagh68jc 55 30 B B NNP cord-318057-xagh68jc 55 31 and and CC cord-318057-xagh68jc 55 32 C C NNP cord-318057-xagh68jc 55 33 , , , cord-318057-xagh68jc 55 34 RSV RSV NNP cord-318057-xagh68jc 55 35 , , , cord-318057-xagh68jc 55 36 rhinovirus rhinovirus NN cord-318057-xagh68jc 55 37 , , , cord-318057-xagh68jc 55 38 parainfluenza parainfluenza NNP cord-318057-xagh68jc 55 39 1 1 NNP cord-318057-xagh68jc 55 40 - - SYM cord-318057-xagh68jc 55 41 4 4 CD cord-318057-xagh68jc 55 42 , , , cord-318057-xagh68jc 55 43 human human JJ cord-318057-xagh68jc 55 44 metapneumovirus metapneumovirus NN cord-318057-xagh68jc 55 45 , , , cord-318057-xagh68jc 55 46 coronavirus coronavirus NN cord-318057-xagh68jc 55 47 ( ( -LRB- cord-318057-xagh68jc 55 48 229E 229e CD cord-318057-xagh68jc 55 49 , , , cord-318057-xagh68jc 55 50 NL63 NL63 NNP cord-318057-xagh68jc 55 51 , , , cord-318057-xagh68jc 55 52 HKU1 HKU1 NNP cord-318057-xagh68jc 55 53 and and CC cord-318057-xagh68jc 55 54 OC43 OC43 NNP cord-318057-xagh68jc 55 55 ) ) -RRB- cord-318057-xagh68jc 55 56 , , , cord-318057-xagh68jc 55 57 adenovirus adenovirus NN cord-318057-xagh68jc 55 58 , , , cord-318057-xagh68jc 55 59 and and CC cord-318057-xagh68jc 55 60 Mycoplasma Mycoplasma NNP cord-318057-xagh68jc 55 61 pneumoniae pneumoniae NNS cord-318057-xagh68jc 55 62 . . . cord-318057-xagh68jc 56 1 The the DT cord-318057-xagh68jc 56 2 oligonucleotide oligonucleotide JJ cord-318057-xagh68jc 56 3 primers primer NNS cord-318057-xagh68jc 56 4 and and CC cord-318057-xagh68jc 56 5 probe probe NN cord-318057-xagh68jc 56 6 ( ( -LRB- cord-318057-xagh68jc 56 7 TIB TIB NNP cord-318057-xagh68jc 56 8 - - HYPH cord-318057-xagh68jc 56 9 MOL MOL NNP cord-318057-xagh68jc 56 10 - - HYPH cord-318057-xagh68jc 56 11 BIOL BIOL NNP cord-318057-xagh68jc 56 12 , , , cord-318057-xagh68jc 56 13 Berlin Berlin NNP cord-318057-xagh68jc 56 14 , , , cord-318057-xagh68jc 56 15 Germany Germany NNP cord-318057-xagh68jc 56 16 ) ) -RRB- cord-318057-xagh68jc 56 17 are be VBP cord-318057-xagh68jc 56 18 outlined outline VBN cord-318057-xagh68jc 56 19 in in IN cord-318057-xagh68jc 56 20 Table Table NNP cord-318057-xagh68jc 56 21 3 3 CD cord-318057-xagh68jc 56 22 . . . cord-318057-xagh68jc 57 1 The the DT cord-318057-xagh68jc 57 2 primers primer NNS cord-318057-xagh68jc 57 3 and and CC cord-318057-xagh68jc 57 4 probes probe NNS cord-318057-xagh68jc 57 5 for for IN cord-318057-xagh68jc 57 6 the the DT cord-318057-xagh68jc 57 7 influenza influenza NN cord-318057-xagh68jc 57 8 A a DT cord-318057-xagh68jc 57 9 generic generic JJ cord-318057-xagh68jc 57 10 assay assay NN cord-318057-xagh68jc 57 11 and and CC cord-318057-xagh68jc 57 12 the the DT cord-318057-xagh68jc 57 13 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 57 14 specific specific JJ cord-318057-xagh68jc 57 15 assay assay NN cord-318057-xagh68jc 57 16 are be VBP cord-318057-xagh68jc 57 17 described describe VBN cord-318057-xagh68jc 57 18 elsewhere elsewhere RB cord-318057-xagh68jc 57 19 [ [ -LRB- cord-318057-xagh68jc 57 20 7 7 CD cord-318057-xagh68jc 57 21 ] ] -RRB- cord-318057-xagh68jc 57 22 . . . cord-318057-xagh68jc 58 1 These these DT cord-318057-xagh68jc 58 2 assays assay NNS cord-318057-xagh68jc 58 3 have have VBP cord-318057-xagh68jc 58 4 been be VBN cord-318057-xagh68jc 58 5 developed develop VBN cord-318057-xagh68jc 58 6 by by IN cord-318057-xagh68jc 58 7 the the DT cord-318057-xagh68jc 58 8 WOSSVC WOSSVC NNP cord-318057-xagh68jc 58 9 and and CC cord-318057-xagh68jc 58 10 used use VBD cord-318057-xagh68jc 58 11 as as IN cord-318057-xagh68jc 58 12 the the DT cord-318057-xagh68jc 58 13 frontline frontline JJ cord-318057-xagh68jc 58 14 test test NN cord-318057-xagh68jc 58 15 for for IN cord-318057-xagh68jc 58 16 respiratory respiratory JJ cord-318057-xagh68jc 58 17 samples sample NNS cord-318057-xagh68jc 58 18 since since IN cord-318057-xagh68jc 58 19 2005 2005 CD cord-318057-xagh68jc 58 20 . . . cord-318057-xagh68jc 59 1 All all DT cord-318057-xagh68jc 59 2 assays assay NNS cord-318057-xagh68jc 59 3 have have VBP cord-318057-xagh68jc 59 4 been be VBN cord-318057-xagh68jc 59 5 shown show VBN cord-318057-xagh68jc 59 6 to to TO cord-318057-xagh68jc 59 7 be be VB cord-318057-xagh68jc 59 8 sensitive sensitive JJ cord-318057-xagh68jc 59 9 and and CC cord-318057-xagh68jc 59 10 specific specific JJ cord-318057-xagh68jc 59 11 by by IN cord-318057-xagh68jc 59 12 in in IN cord-318057-xagh68jc 59 13 - - HYPH cord-318057-xagh68jc 59 14 house house NN cord-318057-xagh68jc 59 15 development development NN cord-318057-xagh68jc 59 16 procedures procedure NNS cord-318057-xagh68jc 59 17 and and CC cord-318057-xagh68jc 59 18 via via IN cord-318057-xagh68jc 59 19 participation participation NN cord-318057-xagh68jc 59 20 in in IN cord-318057-xagh68jc 59 21 numerous numerous JJ cord-318057-xagh68jc 59 22 external external JJ cord-318057-xagh68jc 59 23 quality quality NN cord-318057-xagh68jc 59 24 assessment assessment NN cord-318057-xagh68jc 59 25 schemes scheme NNS cord-318057-xagh68jc 59 26 ( ( -LRB- cord-318057-xagh68jc 59 27 EQA EQA NNP cord-318057-xagh68jc 59 28 ) ) -RRB- cord-318057-xagh68jc 59 29 , , , cord-318057-xagh68jc 59 30 including include VBG cord-318057-xagh68jc 59 31 those those DT cord-318057-xagh68jc 59 32 provided provide VBN cord-318057-xagh68jc 59 33 by by IN cord-318057-xagh68jc 59 34 the the DT cord-318057-xagh68jc 59 35 WHO WHO NNP cord-318057-xagh68jc 59 36 , , , cord-318057-xagh68jc 59 37 the the DT cord-318057-xagh68jc 59 38 Health Health NNP cord-318057-xagh68jc 59 39 Protection Protection NNP cord-318057-xagh68jc 59 40 Agency Agency NNP cord-318057-xagh68jc 59 41 ( ( -LRB- cord-318057-xagh68jc 59 42 HPA HPA NNP cord-318057-xagh68jc 59 43 ) ) -RRB- cord-318057-xagh68jc 59 44 , , , cord-318057-xagh68jc 59 45 and and CC cord-318057-xagh68jc 59 46 Quality Quality NNP cord-318057-xagh68jc 59 47 Controls Controls NNPS cord-318057-xagh68jc 59 48 for for IN cord-318057-xagh68jc 59 49 Molecular Molecular NNP cord-318057-xagh68jc 59 50 Diagnostics Diagnostics NNP cord-318057-xagh68jc 59 51 ( ( -LRB- cord-318057-xagh68jc 59 52 QCMD QCMD NNP cord-318057-xagh68jc 59 53 ) ) -RRB- cord-318057-xagh68jc 59 54 . . . cord-318057-xagh68jc 60 1 All all DT cord-318057-xagh68jc 60 2 assays assay NNS cord-318057-xagh68jc 60 3 used use VBD cord-318057-xagh68jc 60 4 the the DT cord-318057-xagh68jc 60 5 primers primer NNS cord-318057-xagh68jc 60 6 at at IN cord-318057-xagh68jc 60 7 a a DT cord-318057-xagh68jc 60 8 final final JJ cord-318057-xagh68jc 60 9 concentration concentration NN cord-318057-xagh68jc 60 10 of of IN cord-318057-xagh68jc 60 11 0.4 0.4 CD cord-318057-xagh68jc 60 12 μM μm CD cord-318057-xagh68jc 60 13 and and CC cord-318057-xagh68jc 60 14 the the DT cord-318057-xagh68jc 60 15 probe probe NN cord-318057-xagh68jc 60 16 at at IN cord-318057-xagh68jc 60 17 0.2 0.2 CD cord-318057-xagh68jc 60 18 μM μm CD cord-318057-xagh68jc 60 19 in in IN cord-318057-xagh68jc 60 20 a a DT cord-318057-xagh68jc 60 21 15 15 CD cord-318057-xagh68jc 60 22 μl μl IN cord-318057-xagh68jc 60 23 reaction reaction NN cord-318057-xagh68jc 60 24 volume volume NN cord-318057-xagh68jc 60 25 . . . cord-318057-xagh68jc 61 1 One one CD cord-318057-xagh68jc 61 2 - - HYPH cord-318057-xagh68jc 61 3 step step NN cord-318057-xagh68jc 61 4 rtRT rtRT NNP cord-318057-xagh68jc 61 5 - - HYPH cord-318057-xagh68jc 61 6 PCR PCR NNP cord-318057-xagh68jc 61 7 was be VBD cord-318057-xagh68jc 61 8 performed perform VBN cord-318057-xagh68jc 61 9 on on IN cord-318057-xagh68jc 61 10 6 6 CD cord-318057-xagh68jc 61 11 μl μl NN cord-318057-xagh68jc 61 12 of of IN cord-318057-xagh68jc 61 13 RNA RNA NNP cord-318057-xagh68jc 61 14 extract extract NN cord-318057-xagh68jc 61 15 with with IN cord-318057-xagh68jc 61 16 the the DT cord-318057-xagh68jc 61 17 Platinum Platinum NNP cord-318057-xagh68jc 61 18 One one CD cord-318057-xagh68jc 61 19 - - HYPH cord-318057-xagh68jc 61 20 step step NN cord-318057-xagh68jc 61 21 qRT qrt ADD cord-318057-xagh68jc 61 22 - - HYPH cord-318057-xagh68jc 61 23 PCR PCR NNP cord-318057-xagh68jc 61 24 kit kit NN cord-318057-xagh68jc 61 25 ( ( -LRB- cord-318057-xagh68jc 61 26 Invitrogen Invitrogen NNP cord-318057-xagh68jc 61 27 life life NN cord-318057-xagh68jc 61 28 technologies technology NNS cord-318057-xagh68jc 61 29 , , , cord-318057-xagh68jc 61 30 Paisley Paisley NNP cord-318057-xagh68jc 61 31 , , , cord-318057-xagh68jc 61 32 UK UK NNP cord-318057-xagh68jc 61 33 ) ) -RRB- cord-318057-xagh68jc 61 34 on on IN cord-318057-xagh68jc 61 35 an an DT cord-318057-xagh68jc 61 36 ABI ABI NNP cord-318057-xagh68jc 61 37 Prism Prism NNP cord-318057-xagh68jc 61 38 7500 7500 CD cord-318057-xagh68jc 61 39 SDS SDS NNP cord-318057-xagh68jc 61 40 real real JJ cord-318057-xagh68jc 61 41 - - HYPH cord-318057-xagh68jc 61 42 time time NN cord-318057-xagh68jc 61 43 platform platform NN cord-318057-xagh68jc 61 44 ( ( -LRB- cord-318057-xagh68jc 61 45 Applied Applied NNP cord-318057-xagh68jc 61 46 Biosystems Biosystems NNP cord-318057-xagh68jc 61 47 ) ) -RRB- cord-318057-xagh68jc 61 48 . . . cord-318057-xagh68jc 62 1 The the DT cord-318057-xagh68jc 62 2 following follow VBG cord-318057-xagh68jc 62 3 thermal thermal JJ cord-318057-xagh68jc 62 4 profile profile NN cord-318057-xagh68jc 62 5 was be VBD cord-318057-xagh68jc 62 6 used use VBN cord-318057-xagh68jc 62 7 : : : cord-318057-xagh68jc 62 8 a a DT cord-318057-xagh68jc 62 9 single single JJ cord-318057-xagh68jc 62 10 cycle cycle NN cord-318057-xagh68jc 62 11 of of IN cord-318057-xagh68jc 62 12 reverse reverse JJ cord-318057-xagh68jc 62 13 transcription transcription NN cord-318057-xagh68jc 62 14 for for IN cord-318057-xagh68jc 62 15 15 15 CD cord-318057-xagh68jc 62 16 min min NN cord-318057-xagh68jc 62 17 at at IN cord-318057-xagh68jc 62 18 50 50 CD cord-318057-xagh68jc 62 19 ° ° NN cord-318057-xagh68jc 62 20 C c NN cord-318057-xagh68jc 62 21 , , , cord-318057-xagh68jc 62 22 2 2 CD cord-318057-xagh68jc 62 23 min min NN cord-318057-xagh68jc 62 24 at at IN cord-318057-xagh68jc 62 25 95 95 CD cord-318057-xagh68jc 62 26 ° ° NN cord-318057-xagh68jc 62 27 C c NN cord-318057-xagh68jc 62 28 for for IN cord-318057-xagh68jc 62 29 reverse reverse JJ cord-318057-xagh68jc 62 30 transcriptase transcriptase NN cord-318057-xagh68jc 62 31 inactivation inactivation NN cord-318057-xagh68jc 62 32 and and CC cord-318057-xagh68jc 62 33 DNA dna NN cord-318057-xagh68jc 62 34 polymerase polymerase NN cord-318057-xagh68jc 62 35 activation activation NN cord-318057-xagh68jc 62 36 followed follow VBN cord-318057-xagh68jc 62 37 by by IN cord-318057-xagh68jc 62 38 40 40 CD cord-318057-xagh68jc 62 39 amplification amplification NN cord-318057-xagh68jc 62 40 cycles cycle NNS cord-318057-xagh68jc 62 41 of of IN cord-318057-xagh68jc 62 42 15 15 CD cord-318057-xagh68jc 62 43 sec sec NNP cord-318057-xagh68jc 62 44 at at IN cord-318057-xagh68jc 62 45 95 95 CD cord-318057-xagh68jc 62 46 ° ° NN cord-318057-xagh68jc 62 47 C c NN cord-318057-xagh68jc 62 48 and and CC cord-318057-xagh68jc 62 49 34 34 CD cord-318057-xagh68jc 62 50 secs sec NNS cord-318057-xagh68jc 62 51 at at IN cord-318057-xagh68jc 62 52 60 60 CD cord-318057-xagh68jc 62 53 ° ° NN cord-318057-xagh68jc 62 54 C c NN cord-318057-xagh68jc 62 55 each each DT cord-318057-xagh68jc 62 56 ( ( -LRB- cord-318057-xagh68jc 62 57 annealing anneal VBG cord-318057-xagh68jc 62 58 - - HYPH cord-318057-xagh68jc 62 59 extension extension NN cord-318057-xagh68jc 62 60 step step NN cord-318057-xagh68jc 62 61 ) ) -RRB- cord-318057-xagh68jc 62 62 . . . cord-318057-xagh68jc 63 1 Data data NN cord-318057-xagh68jc 63 2 acquisition acquisition NN cord-318057-xagh68jc 63 3 occurred occur VBD cord-318057-xagh68jc 63 4 at at IN cord-318057-xagh68jc 63 5 the the DT cord-318057-xagh68jc 63 6 annealing anneal VBG cord-318057-xagh68jc 63 7 step step NN cord-318057-xagh68jc 63 8 of of IN cord-318057-xagh68jc 63 9 each each DT cord-318057-xagh68jc 63 10 cycle cycle NN cord-318057-xagh68jc 63 11 , , , cord-318057-xagh68jc 63 12 and and CC cord-318057-xagh68jc 63 13 the the DT cord-318057-xagh68jc 63 14 threshold threshold NN cord-318057-xagh68jc 63 15 cycle cycle NN cord-318057-xagh68jc 63 16 ( ( -LRB- cord-318057-xagh68jc 63 17 Ct Ct NNP cord-318057-xagh68jc 63 18 ) ) -RRB- cord-318057-xagh68jc 63 19 for for IN cord-318057-xagh68jc 63 20 each each DT cord-318057-xagh68jc 63 21 sample sample NN cord-318057-xagh68jc 63 22 was be VBD cord-318057-xagh68jc 63 23 calculated calculate VBN cord-318057-xagh68jc 63 24 by by IN cord-318057-xagh68jc 63 25 determining determine VBG cord-318057-xagh68jc 63 26 the the DT cord-318057-xagh68jc 63 27 point point NN cord-318057-xagh68jc 63 28 at at IN cord-318057-xagh68jc 63 29 which which WDT cord-318057-xagh68jc 63 30 the the DT cord-318057-xagh68jc 63 31 fluorescence fluorescence NN cord-318057-xagh68jc 63 32 exceeded exceed VBD cord-318057-xagh68jc 63 33 the the DT cord-318057-xagh68jc 63 34 threshold threshold NN cord-318057-xagh68jc 63 35 limit limit NN cord-318057-xagh68jc 63 36 . . . cord-318057-xagh68jc 64 1 The the DT cord-318057-xagh68jc 64 2 percentage percentage NN cord-318057-xagh68jc 64 3 detection detection NN cord-318057-xagh68jc 64 4 rate rate NN cord-318057-xagh68jc 64 5 for for IN cord-318057-xagh68jc 64 6 each each DT cord-318057-xagh68jc 64 7 pathogen pathogen NN cord-318057-xagh68jc 64 8 was be VBD cord-318057-xagh68jc 64 9 analysed analyse VBN cord-318057-xagh68jc 64 10 monthly monthly JJ cord-318057-xagh68jc 64 11 , , , cord-318057-xagh68jc 64 12 and and CC cord-318057-xagh68jc 64 13 for for IN cord-318057-xagh68jc 64 14 the the DT cord-318057-xagh68jc 64 15 overall overall JJ cord-318057-xagh68jc 64 16 study study NN cord-318057-xagh68jc 64 17 period period NN cord-318057-xagh68jc 64 18 . . . cord-318057-xagh68jc 65 1 Binomial Binomial NNP cord-318057-xagh68jc 65 2 95 95 CD cord-318057-xagh68jc 65 3 % % NN cord-318057-xagh68jc 65 4 confidence confidence NN cord-318057-xagh68jc 65 5 intervals interval NNS cord-318057-xagh68jc 65 6 were be VBD cord-318057-xagh68jc 65 7 also also RB cord-318057-xagh68jc 65 8 determined determine VBN cord-318057-xagh68jc 65 9 for for IN cord-318057-xagh68jc 65 10 each each DT cord-318057-xagh68jc 65 11 detection detection NN cord-318057-xagh68jc 65 12 rate rate NN cord-318057-xagh68jc 65 13 . . . cord-318057-xagh68jc 66 1 A a DT cord-318057-xagh68jc 66 2 chi chi JJ cord-318057-xagh68jc 66 3 - - JJ cord-318057-xagh68jc 66 4 squared squared JJ cord-318057-xagh68jc 66 5 test test NN cord-318057-xagh68jc 66 6 was be VBD cord-318057-xagh68jc 66 7 used use VBN cord-318057-xagh68jc 66 8 for for IN cord-318057-xagh68jc 66 9 any any DT cord-318057-xagh68jc 66 10 comparisons comparison NNS cord-318057-xagh68jc 66 11 of of IN cord-318057-xagh68jc 66 12 two two CD cord-318057-xagh68jc 66 13 data datum NNS cord-318057-xagh68jc 66 14 sets set NNS cord-318057-xagh68jc 66 15 . . . cord-318057-xagh68jc 67 1 Please please UH cord-318057-xagh68jc 67 2 note note VB cord-318057-xagh68jc 67 3 that that IN cord-318057-xagh68jc 67 4 ethical ethical JJ cord-318057-xagh68jc 67 5 approval approval NN cord-318057-xagh68jc 67 6 was be VBD cord-318057-xagh68jc 67 7 not not RB cord-318057-xagh68jc 67 8 required require VBN cord-318057-xagh68jc 67 9 for for IN cord-318057-xagh68jc 67 10 this this DT cord-318057-xagh68jc 67 11 paper paper NN cord-318057-xagh68jc 67 12 as as IN cord-318057-xagh68jc 67 13 the the DT cord-318057-xagh68jc 67 14 samples sample NNS cord-318057-xagh68jc 67 15 were be VBD cord-318057-xagh68jc 67 16 collected collect VBN cord-318057-xagh68jc 67 17 as as IN cord-318057-xagh68jc 67 18 part part NN cord-318057-xagh68jc 67 19 of of IN cord-318057-xagh68jc 67 20 routine routine JJ cord-318057-xagh68jc 67 21 diagnostic diagnostic JJ cord-318057-xagh68jc 67 22 work work NN cord-318057-xagh68jc 67 23 . . . cord-318057-xagh68jc 68 1 Examination examination NN cord-318057-xagh68jc 68 2 of of IN cord-318057-xagh68jc 68 3 the the DT cord-318057-xagh68jc 68 4 detection detection NN cord-318057-xagh68jc 68 5 rate rate NN cord-318057-xagh68jc 68 6 over over IN cord-318057-xagh68jc 68 7 the the DT cord-318057-xagh68jc 68 8 four four CD cord-318057-xagh68jc 68 9 - - HYPH cord-318057-xagh68jc 68 10 month month NN cord-318057-xagh68jc 68 11 period period NN cord-318057-xagh68jc 68 12 shows show VBZ cord-318057-xagh68jc 68 13 that that IN cord-318057-xagh68jc 68 14 respiratory respiratory JJ cord-318057-xagh68jc 68 15 pathogens pathogen NNS cord-318057-xagh68jc 68 16 were be VBD cord-318057-xagh68jc 68 17 detected detect VBN cord-318057-xagh68jc 68 18 in in IN cord-318057-xagh68jc 68 19 27.9 27.9 CD cord-318057-xagh68jc 68 20 % % NN cord-318057-xagh68jc 68 21 of of IN cord-318057-xagh68jc 68 22 all all DT cord-318057-xagh68jc 68 23 samples sample NNS cord-318057-xagh68jc 68 24 submitted submit VBN cord-318057-xagh68jc 68 25 ( ( -LRB- cord-318057-xagh68jc 68 26 95 95 CD cord-318057-xagh68jc 68 27 % % NN cord-318057-xagh68jc 68 28 confidence confidence NN cord-318057-xagh68jc 68 29 interval interval NN cord-318057-xagh68jc 68 30 , , , cord-318057-xagh68jc 68 31 26.3 26.3 CD cord-318057-xagh68jc 68 32 - - HYPH cord-318057-xagh68jc 68 33 29.5 29.5 CD cord-318057-xagh68jc 68 34 % % NN cord-318057-xagh68jc 68 35 ) ) -RRB- cord-318057-xagh68jc 68 36 ( ( -LRB- cord-318057-xagh68jc 68 37 Table table NN cord-318057-xagh68jc 68 38 4 4 CD cord-318057-xagh68jc 68 39 ) ) -RRB- cord-318057-xagh68jc 68 40 . . . cord-318057-xagh68jc 69 1 Numerous numerous JJ cord-318057-xagh68jc 69 2 pathogens pathogen NNS cord-318057-xagh68jc 69 3 were be VBD cord-318057-xagh68jc 69 4 detected detect VBN cord-318057-xagh68jc 69 5 in in IN cord-318057-xagh68jc 69 6 the the DT cord-318057-xagh68jc 69 7 samples sample NNS cord-318057-xagh68jc 69 8 . . . cord-318057-xagh68jc 70 1 The the DT cord-318057-xagh68jc 70 2 most most RBS cord-318057-xagh68jc 70 3 commonly commonly RB cord-318057-xagh68jc 70 4 detected detect VBN cord-318057-xagh68jc 70 5 pathogen pathogen NN cord-318057-xagh68jc 70 6 was be VBD cord-318057-xagh68jc 70 7 rhinovirus rhinovirus NN cord-318057-xagh68jc 70 8 which which WDT cord-318057-xagh68jc 70 9 was be VBD cord-318057-xagh68jc 70 10 detected detect VBN cord-318057-xagh68jc 70 11 in in IN cord-318057-xagh68jc 70 12 8.9 8.9 CD cord-318057-xagh68jc 70 13 % % NN cord-318057-xagh68jc 70 14 of of IN cord-318057-xagh68jc 70 15 all all DT cord-318057-xagh68jc 70 16 samples sample NNS cord-318057-xagh68jc 70 17 tested test VBN cord-318057-xagh68jc 70 18 ( ( -LRB- cord-318057-xagh68jc 70 19 95 95 CD cord-318057-xagh68jc 70 20 % % NN cord-318057-xagh68jc 70 21 confidence confidence NN cord-318057-xagh68jc 70 22 interval interval NN cord-318057-xagh68jc 70 23 , , , cord-318057-xagh68jc 70 24 7.9 7.9 CD cord-318057-xagh68jc 70 25 - - SYM cord-318057-xagh68jc 70 26 9.9 9.9 CD cord-318057-xagh68jc 70 27 % % NN cord-318057-xagh68jc 70 28 ) ) -RRB- cord-318057-xagh68jc 70 29 , , , cord-318057-xagh68jc 70 30 and and CC cord-318057-xagh68jc 70 31 was be VBD cord-318057-xagh68jc 70 32 similarly similarly RB cord-318057-xagh68jc 70 33 detected detect VBN cord-318057-xagh68jc 70 34 in in IN cord-318057-xagh68jc 70 35 each each DT cord-318057-xagh68jc 70 36 of of IN cord-318057-xagh68jc 70 37 the the DT cord-318057-xagh68jc 70 38 months month NNS cord-318057-xagh68jc 70 39 examined examine VBN cord-318057-xagh68jc 70 40 . . . cord-318057-xagh68jc 71 1 Adenovirus Adenovirus NNP cord-318057-xagh68jc 71 2 was be VBD cord-318057-xagh68jc 71 3 also also RB cord-318057-xagh68jc 71 4 commonly commonly RB cord-318057-xagh68jc 71 5 detected detect VBN cord-318057-xagh68jc 71 6 ( ( -LRB- cord-318057-xagh68jc 71 7 3.5 3.5 CD cord-318057-xagh68jc 71 8 % % NN cord-318057-xagh68jc 71 9 ( ( -LRB- cord-318057-xagh68jc 71 10 95 95 CD cord-318057-xagh68jc 71 11 % % NN cord-318057-xagh68jc 71 12 confidence confidence NN cord-318057-xagh68jc 71 13 interval interval NN cord-318057-xagh68jc 71 14 , , , cord-318057-xagh68jc 71 15 2.9 2.9 CD cord-318057-xagh68jc 71 16 - - SYM cord-318057-xagh68jc 71 17 4.2 4.2 CD cord-318057-xagh68jc 71 18 % % NN cord-318057-xagh68jc 71 19 ) ) -RRB- cord-318057-xagh68jc 71 20 . . . cord-318057-xagh68jc 72 1 Parainfluenza Parainfluenza NNP cord-318057-xagh68jc 72 2 3 3 CD cord-318057-xagh68jc 72 3 showed show VBD cord-318057-xagh68jc 72 4 its -PRON- PRP$ cord-318057-xagh68jc 72 5 typical typical JJ cord-318057-xagh68jc 72 6 activity activity NN cord-318057-xagh68jc 72 7 . . . cord-318057-xagh68jc 73 1 It -PRON- PRP cord-318057-xagh68jc 73 2 was be VBD cord-318057-xagh68jc 73 3 detected detect VBN cord-318057-xagh68jc 73 4 in in IN cord-318057-xagh68jc 73 5 7.9 7.9 CD cord-318057-xagh68jc 73 6 % % NN cord-318057-xagh68jc 73 7 of of IN cord-318057-xagh68jc 73 8 all all DT cord-318057-xagh68jc 73 9 samples sample NNS cord-318057-xagh68jc 73 10 collected collect VBN cord-318057-xagh68jc 73 11 in in IN cord-318057-xagh68jc 73 12 April April NNP cord-318057-xagh68jc 73 13 ( ( -LRB- cord-318057-xagh68jc 73 14 95 95 CD cord-318057-xagh68jc 73 15 % % NN cord-318057-xagh68jc 73 16 confidence confidence NN cord-318057-xagh68jc 73 17 interval interval NN cord-318057-xagh68jc 73 18 , , , cord-318057-xagh68jc 73 19 6 6 CD cord-318057-xagh68jc 73 20 - - SYM cord-318057-xagh68jc 73 21 10 10 CD cord-318057-xagh68jc 73 22 % % NN cord-318057-xagh68jc 73 23 ) ) -RRB- cord-318057-xagh68jc 73 24 with with IN cord-318057-xagh68jc 73 25 decreasing decrease VBG cord-318057-xagh68jc 73 26 activity activity NN cord-318057-xagh68jc 73 27 thereafter thereafter RB cord-318057-xagh68jc 73 28 ( ( -LRB- cord-318057-xagh68jc 73 29 1.9 1.9 CD cord-318057-xagh68jc 73 30 % % NN cord-318057-xagh68jc 73 31 in in IN cord-318057-xagh68jc 73 32 July July NNP cord-318057-xagh68jc 73 33 ( ( -LRB- cord-318057-xagh68jc 73 34 95 95 CD cord-318057-xagh68jc 73 35 % % NN cord-318057-xagh68jc 73 36 confidence confidence NN cord-318057-xagh68jc 73 37 interval interval NN cord-318057-xagh68jc 73 38 , , , cord-318057-xagh68jc 73 39 1.2 1.2 CD cord-318057-xagh68jc 73 40 - - SYM cord-318057-xagh68jc 73 41 2.8%))(p 2.8%))(p CD cord-318057-xagh68jc 73 42 < < XX cord-318057-xagh68jc 73 43 0.001 0.001 CD cord-318057-xagh68jc 73 44 ) ) -RRB- cord-318057-xagh68jc 73 45 ) ) -RRB- cord-318057-xagh68jc 73 46 . . . cord-318057-xagh68jc 74 1 Interestingly interestingly RB cord-318057-xagh68jc 74 2 , , , cord-318057-xagh68jc 74 3 parainfluenza parainfluenza NNP cord-318057-xagh68jc 74 4 1 1 CD cord-318057-xagh68jc 74 5 ( ( -LRB- cord-318057-xagh68jc 74 6 a a DT cord-318057-xagh68jc 74 7 pathogen pathogen NN cord-318057-xagh68jc 74 8 normally normally RB cord-318057-xagh68jc 74 9 associated associate VBN cord-318057-xagh68jc 74 10 with with IN cord-318057-xagh68jc 74 11 winter winter NN cord-318057-xagh68jc 74 12 activity activity NN cord-318057-xagh68jc 74 13 ) ) -RRB- cord-318057-xagh68jc 74 14 was be VBD cord-318057-xagh68jc 74 15 present present JJ cord-318057-xagh68jc 74 16 in in IN cord-318057-xagh68jc 74 17 an an DT cord-318057-xagh68jc 74 18 unexpectedly unexpectedly RB cord-318057-xagh68jc 74 19 large large JJ cord-318057-xagh68jc 74 20 number number NN cord-318057-xagh68jc 74 21 of of IN cord-318057-xagh68jc 74 22 samples sample NNS cord-318057-xagh68jc 74 23 during during IN cord-318057-xagh68jc 74 24 this this DT cord-318057-xagh68jc 74 25 period period NN cord-318057-xagh68jc 74 26 ( ( -LRB- cord-318057-xagh68jc 74 27 1.9 1.9 CD cord-318057-xagh68jc 74 28 % % NN cord-318057-xagh68jc 74 29 of of IN cord-318057-xagh68jc 74 30 all all DT cord-318057-xagh68jc 74 31 samples sample NNS cord-318057-xagh68jc 74 32 overall overall JJ cord-318057-xagh68jc 74 33 ( ( -LRB- cord-318057-xagh68jc 74 34 95 95 CD cord-318057-xagh68jc 74 35 % % NN cord-318057-xagh68jc 74 36 confidence confidence NN cord-318057-xagh68jc 74 37 interval interval NN cord-318057-xagh68jc 74 38 , , , cord-318057-xagh68jc 74 39 1.4 1.4 CD cord-318057-xagh68jc 74 40 - - SYM cord-318057-xagh68jc 74 41 2.4 2.4 CD cord-318057-xagh68jc 74 42 % % NN cord-318057-xagh68jc 74 43 ) ) -RRB- cord-318057-xagh68jc 74 44 and and CC cord-318057-xagh68jc 74 45 mirrored mirror VBD cord-318057-xagh68jc 74 46 the the DT cord-318057-xagh68jc 74 47 increasing increase VBG cord-318057-xagh68jc 74 48 activity activity NN cord-318057-xagh68jc 74 49 of of IN cord-318057-xagh68jc 74 50 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 74 51 ( ( -LRB- cord-318057-xagh68jc 74 52 from from IN cord-318057-xagh68jc 74 53 0.8 0.8 CD cord-318057-xagh68jc 74 54 % % NN cord-318057-xagh68jc 74 55 in in IN cord-318057-xagh68jc 74 56 April April NNP cord-318057-xagh68jc 74 57 ( ( -LRB- cord-318057-xagh68jc 74 58 95 95 CD cord-318057-xagh68jc 74 59 % % NN cord-318057-xagh68jc 74 60 confidence confidence NN cord-318057-xagh68jc 74 61 interval interval NN cord-318057-xagh68jc 74 62 , , , cord-318057-xagh68jc 74 63 0 0 CD cord-318057-xagh68jc 74 64 - - SYM cord-318057-xagh68jc 74 65 2 2 CD cord-318057-xagh68jc 74 66 % % NN cord-318057-xagh68jc 74 67 ) ) -RRB- cord-318057-xagh68jc 74 68 to to IN cord-318057-xagh68jc 74 69 3 3 CD cord-318057-xagh68jc 74 70 % % NN cord-318057-xagh68jc 74 71 in in IN cord-318057-xagh68jc 74 72 July July NNP cord-318057-xagh68jc 74 73 ( ( -LRB- cord-318057-xagh68jc 74 74 95 95 CD cord-318057-xagh68jc 74 75 % % NN cord-318057-xagh68jc 74 76 confidence confidence NN cord-318057-xagh68jc 74 77 interval interval NN cord-318057-xagh68jc 74 78 , , , cord-318057-xagh68jc 74 79 2.1 2.1 CD cord-318057-xagh68jc 74 80 - - SYM cord-318057-xagh68jc 74 81 4.1 4.1 CD cord-318057-xagh68jc 74 82 % % NN cord-318057-xagh68jc 74 83 ) ) -RRB- cord-318057-xagh68jc 75 1 ( ( -LRB- cord-318057-xagh68jc 75 2 p p NN cord-318057-xagh68jc 75 3 = = SYM cord-318057-xagh68jc 75 4 0.0054 0.0054 CD cord-318057-xagh68jc 75 5 ) ) -RRB- cord-318057-xagh68jc 75 6 ) ) -RRB- cord-318057-xagh68jc 75 7 . . . cord-318057-xagh68jc 76 1 The the DT cord-318057-xagh68jc 76 2 detection detection NN cord-318057-xagh68jc 76 3 rate rate NN cord-318057-xagh68jc 76 4 for for IN cord-318057-xagh68jc 76 5 the the DT cord-318057-xagh68jc 76 6 remaining remain VBG cord-318057-xagh68jc 76 7 pathogens pathogen NNS cord-318057-xagh68jc 76 8 was be VBD cord-318057-xagh68jc 76 9 low low JJ cord-318057-xagh68jc 76 10 ( ( -LRB- cord-318057-xagh68jc 76 11 < < XX cord-318057-xagh68jc 76 12 1.6 1.6 CD cord-318057-xagh68jc 76 13 % % NN cord-318057-xagh68jc 76 14 ) ) -RRB- cord-318057-xagh68jc 76 15 and and CC cord-318057-xagh68jc 76 16 showed show VBD cord-318057-xagh68jc 76 17 no no DT cord-318057-xagh68jc 76 18 particular particular JJ cord-318057-xagh68jc 76 19 pattern pattern NN cord-318057-xagh68jc 76 20 over over IN cord-318057-xagh68jc 76 21 the the DT cord-318057-xagh68jc 76 22 months month NNS cord-318057-xagh68jc 76 23 examined examine VBN cord-318057-xagh68jc 76 24 . . . cord-318057-xagh68jc 77 1 This this DT cord-318057-xagh68jc 77 2 study study NN cord-318057-xagh68jc 77 3 highlights highlight VBZ cord-318057-xagh68jc 77 4 the the DT cord-318057-xagh68jc 77 5 problems problem NNS cord-318057-xagh68jc 77 6 of of IN cord-318057-xagh68jc 77 7 using use VBG cord-318057-xagh68jc 77 8 a a DT cord-318057-xagh68jc 77 9 clinical clinical JJ cord-318057-xagh68jc 77 10 algorithm algorithm NN cord-318057-xagh68jc 77 11 to to TO cord-318057-xagh68jc 77 12 detect detect VB cord-318057-xagh68jc 77 13 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 77 14 during during IN cord-318057-xagh68jc 77 15 a a DT cord-318057-xagh68jc 77 16 period period NN cord-318057-xagh68jc 77 17 of of IN cord-318057-xagh68jc 77 18 low low JJ cord-318057-xagh68jc 77 19 incidence incidence NN cord-318057-xagh68jc 77 20 . . . cord-318057-xagh68jc 78 1 We -PRON- PRP cord-318057-xagh68jc 78 2 found find VBD cord-318057-xagh68jc 78 3 that that IN cord-318057-xagh68jc 78 4 clinicians clinician NNS cord-318057-xagh68jc 78 5 frequently frequently RB cord-318057-xagh68jc 78 6 misdiagnosed misdiagnose VBD cord-318057-xagh68jc 78 7 common common JJ cord-318057-xagh68jc 78 8 respiratory respiratory JJ cord-318057-xagh68jc 78 9 pathogens pathogen NNS cord-318057-xagh68jc 78 10 as as IN cord-318057-xagh68jc 78 11 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 78 12 during during IN cord-318057-xagh68jc 78 13 the the DT cord-318057-xagh68jc 78 14 spring spring NN cord-318057-xagh68jc 78 15 / / SYM cord-318057-xagh68jc 78 16 summer summer NN cord-318057-xagh68jc 78 17 outbreak outbreak NN cord-318057-xagh68jc 78 18 in in IN cord-318057-xagh68jc 78 19 Scotland Scotland NNP cord-318057-xagh68jc 78 20 . . . cord-318057-xagh68jc 79 1 This this DT cord-318057-xagh68jc 79 2 finding finding NN cord-318057-xagh68jc 79 3 is be VBZ cord-318057-xagh68jc 79 4 similar similar JJ cord-318057-xagh68jc 79 5 to to IN cord-318057-xagh68jc 79 6 results result NNS cord-318057-xagh68jc 79 7 found find VBN cord-318057-xagh68jc 79 8 in in IN cord-318057-xagh68jc 79 9 a a DT cord-318057-xagh68jc 79 10 recent recent JJ cord-318057-xagh68jc 79 11 audit audit NN cord-318057-xagh68jc 79 12 of of IN cord-318057-xagh68jc 79 13 patients patient NNS cord-318057-xagh68jc 79 14 hospitalised hospitalise VBN cord-318057-xagh68jc 79 15 with with IN cord-318057-xagh68jc 79 16 clinically clinically RB cord-318057-xagh68jc 79 17 diagnosed diagnose VBN cord-318057-xagh68jc 79 18 H1N1/ H1N1/ NNP cord-318057-xagh68jc 79 19 2009 2009 CD cord-318057-xagh68jc 79 20 in in IN cord-318057-xagh68jc 79 21 infectious infectious JJ cord-318057-xagh68jc 79 22 disease disease NN cord-318057-xagh68jc 79 23 units unit NNS cord-318057-xagh68jc 79 24 in in IN cord-318057-xagh68jc 79 25 Scotland Scotland NNP cord-318057-xagh68jc 79 26 [ [ -LRB- cord-318057-xagh68jc 79 27 8 8 CD cord-318057-xagh68jc 79 28 ] ] -RRB- cord-318057-xagh68jc 79 29 . . . cord-318057-xagh68jc 80 1 The the DT cord-318057-xagh68jc 80 2 pathogens pathogen NNS cord-318057-xagh68jc 80 3 that that WDT cord-318057-xagh68jc 80 4 were be VBD cord-318057-xagh68jc 80 5 misdiagnosed misdiagnose VBN cord-318057-xagh68jc 80 6 as as IN cord-318057-xagh68jc 80 7 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 80 8 were be VBD cord-318057-xagh68jc 80 9 , , , cord-318057-xagh68jc 80 10 for for IN cord-318057-xagh68jc 80 11 the the DT cord-318057-xagh68jc 80 12 most most JJS cord-318057-xagh68jc 80 13 part part NN cord-318057-xagh68jc 80 14 , , , cord-318057-xagh68jc 80 15 those those DT cord-318057-xagh68jc 80 16 viruses virus NNS cord-318057-xagh68jc 80 17 expected expect VBN cord-318057-xagh68jc 80 18 to to TO cord-318057-xagh68jc 80 19 be be VB cord-318057-xagh68jc 80 20 encountered encounter VBN cord-318057-xagh68jc 80 21 during during IN cord-318057-xagh68jc 80 22 the the DT cord-318057-xagh68jc 80 23 spring spring NN cord-318057-xagh68jc 80 24 / / SYM cord-318057-xagh68jc 80 25 summer summer NN cord-318057-xagh68jc 80 26 months month NNS cord-318057-xagh68jc 80 27 . . . cord-318057-xagh68jc 81 1 Although although IN cord-318057-xagh68jc 81 2 all all PDT cord-318057-xagh68jc 81 3 the the DT cord-318057-xagh68jc 81 4 pathogens pathogen NNS cord-318057-xagh68jc 81 5 included include VBN cord-318057-xagh68jc 81 6 in in IN cord-318057-xagh68jc 81 7 the the DT cord-318057-xagh68jc 81 8 respiratory respiratory JJ cord-318057-xagh68jc 81 9 screen screen NN cord-318057-xagh68jc 81 10 were be VBD cord-318057-xagh68jc 81 11 detected detect VBN cord-318057-xagh68jc 81 12 on on IN cord-318057-xagh68jc 81 13 at at RB cord-318057-xagh68jc 81 14 least least RBS cord-318057-xagh68jc 81 15 one one CD cord-318057-xagh68jc 81 16 occasion occasion NN cord-318057-xagh68jc 81 17 , , , cord-318057-xagh68jc 81 18 rhinovirus rhinovirus NN cord-318057-xagh68jc 81 19 was be VBD cord-318057-xagh68jc 81 20 the the DT cord-318057-xagh68jc 81 21 most most RBS cord-318057-xagh68jc 81 22 commonly commonly RB cord-318057-xagh68jc 81 23 detected detect VBN cord-318057-xagh68jc 81 24 pathogen pathogen NN cord-318057-xagh68jc 81 25 . . . cord-318057-xagh68jc 82 1 This this DT cord-318057-xagh68jc 82 2 is be VBZ cord-318057-xagh68jc 82 3 not not RB cord-318057-xagh68jc 82 4 a a DT cord-318057-xagh68jc 82 5 surprising surprising JJ cord-318057-xagh68jc 82 6 finding finding NN cord-318057-xagh68jc 82 7 , , , cord-318057-xagh68jc 82 8 since since IN cord-318057-xagh68jc 82 9 rhinovirus rhinovirus NN cord-318057-xagh68jc 82 10 is be VBZ cord-318057-xagh68jc 82 11 detected detect VBN cord-318057-xagh68jc 82 12 all all PDT cord-318057-xagh68jc 82 13 the the DT cord-318057-xagh68jc 82 14 year year NN cord-318057-xagh68jc 82 15 round round NN cord-318057-xagh68jc 82 16 ; ; : cord-318057-xagh68jc 82 17 moreover moreover RB cord-318057-xagh68jc 82 18 , , , cord-318057-xagh68jc 82 19 it -PRON- PRP cord-318057-xagh68jc 82 20 is be VBZ cord-318057-xagh68jc 82 21 recognised recognise VBN cord-318057-xagh68jc 82 22 as as IN cord-318057-xagh68jc 82 23 a a DT cord-318057-xagh68jc 82 24 very very RB cord-318057-xagh68jc 82 25 common common JJ cord-318057-xagh68jc 82 26 cause cause NN cord-318057-xagh68jc 82 27 of of IN cord-318057-xagh68jc 82 28 the the DT cord-318057-xagh68jc 82 29 common common JJ cord-318057-xagh68jc 82 30 cold cold NN cord-318057-xagh68jc 82 31 and and CC cord-318057-xagh68jc 82 32 is be VBZ cord-318057-xagh68jc 82 33 increasingly increasingly RB cord-318057-xagh68jc 82 34 being be VBG cord-318057-xagh68jc 82 35 implicated implicate VBN cord-318057-xagh68jc 82 36 in in IN cord-318057-xagh68jc 82 37 more more RBR cord-318057-xagh68jc 82 38 severe severe JJ cord-318057-xagh68jc 82 39 clinical clinical JJ cord-318057-xagh68jc 82 40 syndromes syndrome NNS cord-318057-xagh68jc 82 41 [ [ -LRB- cord-318057-xagh68jc 82 42 9 9 CD cord-318057-xagh68jc 82 43 ] ] -RRB- cord-318057-xagh68jc 82 44 . . . cord-318057-xagh68jc 83 1 PF1 PF1 NNP cord-318057-xagh68jc 83 2 , , , cord-318057-xagh68jc 83 3 PF3 pf3 NN cord-318057-xagh68jc 83 4 , , , cord-318057-xagh68jc 83 5 adenovirus adenovirus NN cord-318057-xagh68jc 83 6 and and CC cord-318057-xagh68jc 83 7 human human JJ cord-318057-xagh68jc 83 8 metapneumovirus metapneumovirus NNP cord-318057-xagh68jc 83 9 were be VBD cord-318057-xagh68jc 83 10 also also RB cord-318057-xagh68jc 83 11 frequently frequently RB cord-318057-xagh68jc 83 12 detected detect VBN cord-318057-xagh68jc 83 13 . . . cord-318057-xagh68jc 84 1 An an DT cord-318057-xagh68jc 84 2 unexpected unexpected JJ cord-318057-xagh68jc 84 3 finding finding NN cord-318057-xagh68jc 84 4 was be VBD cord-318057-xagh68jc 84 5 the the DT cord-318057-xagh68jc 84 6 frequent frequent JJ cord-318057-xagh68jc 84 7 detection detection NN cord-318057-xagh68jc 84 8 of of IN cord-318057-xagh68jc 84 9 parainfluenza parainfluenza NNP cord-318057-xagh68jc 84 10 1 1 CD cord-318057-xagh68jc 84 11 , , , cord-318057-xagh68jc 84 12 a a DT cord-318057-xagh68jc 84 13 pathogen pathogen NN cord-318057-xagh68jc 84 14 which which WDT cord-318057-xagh68jc 84 15 is be VBZ cord-318057-xagh68jc 84 16 traditionally traditionally RB cord-318057-xagh68jc 84 17 recognised recognise VBN cord-318057-xagh68jc 84 18 as as IN cord-318057-xagh68jc 84 19 a a DT cord-318057-xagh68jc 84 20 winter winter NN cord-318057-xagh68jc 84 21 pathogen pathogen NN cord-318057-xagh68jc 84 22 . . . cord-318057-xagh68jc 85 1 However however RB cord-318057-xagh68jc 85 2 , , , cord-318057-xagh68jc 85 3 our -PRON- PRP$ cord-318057-xagh68jc 85 4 data datum NNS cord-318057-xagh68jc 85 5 shows show VBZ cord-318057-xagh68jc 85 6 that that IN cord-318057-xagh68jc 85 7 there there EX cord-318057-xagh68jc 85 8 were be VBD cord-318057-xagh68jc 85 9 numerous numerous JJ cord-318057-xagh68jc 85 10 cases case NNS cord-318057-xagh68jc 85 11 of of IN cord-318057-xagh68jc 85 12 parainfluenza parainfluenza NNP cord-318057-xagh68jc 85 13 1 1 CD cord-318057-xagh68jc 85 14 during during IN cord-318057-xagh68jc 85 15 April April NNP cord-318057-xagh68jc 85 16 - - HYPH cord-318057-xagh68jc 85 17 July July NNP cord-318057-xagh68jc 85 18 2009 2009 CD cord-318057-xagh68jc 85 19 , , , cord-318057-xagh68jc 85 20 and and CC cord-318057-xagh68jc 85 21 these these DT cord-318057-xagh68jc 85 22 mirrored mirror VBD cord-318057-xagh68jc 85 23 the the DT cord-318057-xagh68jc 85 24 activity activity NN cord-318057-xagh68jc 85 25 of of IN cord-318057-xagh68jc 85 26 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 85 27 . . . cord-318057-xagh68jc 86 1 The the DT cord-318057-xagh68jc 86 2 unexpected unexpected JJ cord-318057-xagh68jc 86 3 summer summer NN cord-318057-xagh68jc 86 4 activity activity NN cord-318057-xagh68jc 86 5 of of IN cord-318057-xagh68jc 86 6 parainfluenza parainfluenza NNP cord-318057-xagh68jc 86 7 1 1 CD cord-318057-xagh68jc 86 8 mirrors mirror NNS cord-318057-xagh68jc 86 9 that that WDT cord-318057-xagh68jc 86 10 of of IN cord-318057-xagh68jc 86 11 parainfluenza parainfluenza NNP cord-318057-xagh68jc 86 12 4 4 CD cord-318057-xagh68jc 86 13 in in IN cord-318057-xagh68jc 86 14 2008 2008 CD cord-318057-xagh68jc 86 15 , , , cord-318057-xagh68jc 86 16 which which WDT cord-318057-xagh68jc 86 17 was be VBD cord-318057-xagh68jc 86 18 also also RB cord-318057-xagh68jc 86 19 unexpectedly unexpectedly RB cord-318057-xagh68jc 86 20 detected detect VBN cord-318057-xagh68jc 86 21 during during IN cord-318057-xagh68jc 86 22 the the DT cord-318057-xagh68jc 86 23 summer summer NN cord-318057-xagh68jc 86 24 months month NNS cord-318057-xagh68jc 86 25 ( ( -LRB- cord-318057-xagh68jc 86 26 data datum NNS cord-318057-xagh68jc 86 27 not not RB cord-318057-xagh68jc 86 28 shown show VBN cord-318057-xagh68jc 86 29 ) ) -RRB- cord-318057-xagh68jc 86 30 . . . cord-318057-xagh68jc 87 1 This this DT cord-318057-xagh68jc 87 2 suggests suggest VBZ cord-318057-xagh68jc 87 3 that that IN cord-318057-xagh68jc 87 4 the the DT cord-318057-xagh68jc 87 5 epidemiology epidemiology NN cord-318057-xagh68jc 87 6 of of IN cord-318057-xagh68jc 87 7 established establish VBN cord-318057-xagh68jc 87 8 viruses virus NNS cord-318057-xagh68jc 87 9 , , , cord-318057-xagh68jc 87 10 such such JJ cord-318057-xagh68jc 87 11 as as IN cord-318057-xagh68jc 87 12 parainfluenza parainfluenza NNP cord-318057-xagh68jc 87 13 1 1 CD cord-318057-xagh68jc 87 14 , , , cord-318057-xagh68jc 87 15 should should MD cord-318057-xagh68jc 87 16 be be VB cord-318057-xagh68jc 87 17 re re VBN cord-318057-xagh68jc 87 18 - - VBN cord-318057-xagh68jc 87 19 examined examine VBN cord-318057-xagh68jc 87 20 in in IN cord-318057-xagh68jc 87 21 the the DT cord-318057-xagh68jc 87 22 light light NN cord-318057-xagh68jc 87 23 of of IN cord-318057-xagh68jc 87 24 new new JJ cord-318057-xagh68jc 87 25 , , , cord-318057-xagh68jc 87 26 more more RBR cord-318057-xagh68jc 87 27 sensitive sensitive JJ cord-318057-xagh68jc 87 28 , , , cord-318057-xagh68jc 87 29 molecular molecular JJ cord-318057-xagh68jc 87 30 assays assay NNS cord-318057-xagh68jc 87 31 . . . cord-318057-xagh68jc 88 1 It -PRON- PRP cord-318057-xagh68jc 88 2 should should MD cord-318057-xagh68jc 88 3 be be VB cord-318057-xagh68jc 88 4 noted note VBN cord-318057-xagh68jc 88 5 that that IN cord-318057-xagh68jc 88 6 the the DT cord-318057-xagh68jc 88 7 majority majority NN cord-318057-xagh68jc 88 8 ( ( -LRB- cord-318057-xagh68jc 88 9 ~70 ~70 CD cord-318057-xagh68jc 88 10 % % NN cord-318057-xagh68jc 88 11 ) ) -RRB- cord-318057-xagh68jc 88 12 of of IN cord-318057-xagh68jc 88 13 samples sample NNS cord-318057-xagh68jc 88 14 submitted submit VBN cord-318057-xagh68jc 88 15 to to IN cord-318057-xagh68jc 88 16 the the DT cord-318057-xagh68jc 88 17 laboratory laboratory NN cord-318057-xagh68jc 88 18 were be VBD cord-318057-xagh68jc 88 19 found find VBN cord-318057-xagh68jc 88 20 to to TO cord-318057-xagh68jc 88 21 be be VB cord-318057-xagh68jc 88 22 negative negative JJ cord-318057-xagh68jc 88 23 by by IN cord-318057-xagh68jc 88 24 real real JJ cord-318057-xagh68jc 88 25 time time NN cord-318057-xagh68jc 88 26 rtRT rtRT NNP cord-318057-xagh68jc 88 27 - - HYPH cord-318057-xagh68jc 88 28 PCR PCR NNP cord-318057-xagh68jc 88 29 . . . cord-318057-xagh68jc 89 1 By by IN cord-318057-xagh68jc 89 2 participation participation NN cord-318057-xagh68jc 89 3 in in IN cord-318057-xagh68jc 89 4 various various JJ cord-318057-xagh68jc 89 5 EQA EQA NNP cord-318057-xagh68jc 89 6 schemes scheme NNS cord-318057-xagh68jc 89 7 , , , cord-318057-xagh68jc 89 8 the the DT cord-318057-xagh68jc 89 9 assays assay NNS cord-318057-xagh68jc 89 10 used use VBN cord-318057-xagh68jc 89 11 by by IN cord-318057-xagh68jc 89 12 the the DT cord-318057-xagh68jc 89 13 laboratory laboratory NN cord-318057-xagh68jc 89 14 have have VBP cord-318057-xagh68jc 89 15 been be VBN cord-318057-xagh68jc 89 16 shown show VBN cord-318057-xagh68jc 89 17 to to TO cord-318057-xagh68jc 89 18 be be VB cord-318057-xagh68jc 89 19 highly highly RB cord-318057-xagh68jc 89 20 sensitive sensitive JJ cord-318057-xagh68jc 89 21 . . . cord-318057-xagh68jc 90 1 Consequently consequently RB cord-318057-xagh68jc 90 2 , , , cord-318057-xagh68jc 90 3 the the DT cord-318057-xagh68jc 90 4 large large JJ cord-318057-xagh68jc 90 5 number number NN cord-318057-xagh68jc 90 6 of of IN cord-318057-xagh68jc 90 7 negative negative JJ cord-318057-xagh68jc 90 8 results result NNS cord-318057-xagh68jc 90 9 are be VBP cord-318057-xagh68jc 90 10 unlikely unlikely JJ cord-318057-xagh68jc 90 11 to to TO cord-318057-xagh68jc 90 12 have have VB cord-318057-xagh68jc 90 13 been be VBN cord-318057-xagh68jc 90 14 caused cause VBN cord-318057-xagh68jc 90 15 by by IN cord-318057-xagh68jc 90 16 the the DT cord-318057-xagh68jc 90 17 pathogens pathogen NNS cord-318057-xagh68jc 90 18 already already RB cord-318057-xagh68jc 90 19 tested test VBN cord-318057-xagh68jc 90 20 for for IN cord-318057-xagh68jc 90 21 in in IN cord-318057-xagh68jc 90 22 the the DT cord-318057-xagh68jc 90 23 screen screen NN cord-318057-xagh68jc 90 24 . . . cord-318057-xagh68jc 91 1 However however RB cord-318057-xagh68jc 91 2 , , , cord-318057-xagh68jc 91 3 the the DT cord-318057-xagh68jc 91 4 respiratory respiratory JJ cord-318057-xagh68jc 91 5 screen screen NN cord-318057-xagh68jc 91 6 does do VBZ cord-318057-xagh68jc 91 7 not not RB cord-318057-xagh68jc 91 8 include include VB cord-318057-xagh68jc 91 9 an an DT cord-318057-xagh68jc 91 10 internal internal JJ cord-318057-xagh68jc 91 11 control control NN cord-318057-xagh68jc 91 12 . . . cord-318057-xagh68jc 92 1 Consequently consequently RB cord-318057-xagh68jc 92 2 , , , cord-318057-xagh68jc 92 3 false false JJ cord-318057-xagh68jc 92 4 negatives negative NNS cord-318057-xagh68jc 92 5 due due JJ cord-318057-xagh68jc 92 6 to to IN cord-318057-xagh68jc 92 7 inhibition inhibition NN cord-318057-xagh68jc 92 8 may may MD cord-318057-xagh68jc 92 9 have have VB cord-318057-xagh68jc 92 10 occurred occur VBN cord-318057-xagh68jc 92 11 . . . cord-318057-xagh68jc 93 1 Nevertheless nevertheless RB cord-318057-xagh68jc 93 2 , , , cord-318057-xagh68jc 93 3 the the DT cord-318057-xagh68jc 93 4 number number NN cord-318057-xagh68jc 93 5 of of IN cord-318057-xagh68jc 93 6 samples sample NNS cord-318057-xagh68jc 93 7 affected affect VBN cord-318057-xagh68jc 93 8 is be VBZ cord-318057-xagh68jc 93 9 likely likely JJ cord-318057-xagh68jc 93 10 to to TO cord-318057-xagh68jc 93 11 be be VB cord-318057-xagh68jc 93 12 small small JJ cord-318057-xagh68jc 93 13 , , , cord-318057-xagh68jc 93 14 since since IN cord-318057-xagh68jc 93 15 a a DT cord-318057-xagh68jc 93 16 recent recent JJ cord-318057-xagh68jc 93 17 in in IN cord-318057-xagh68jc 93 18 - - HYPH cord-318057-xagh68jc 93 19 house house NN cord-318057-xagh68jc 93 20 audit audit NN cord-318057-xagh68jc 93 21 found find VBD cord-318057-xagh68jc 93 22 that that IN cord-318057-xagh68jc 93 23 inhibition inhibition NN cord-318057-xagh68jc 93 24 occurs occur VBZ cord-318057-xagh68jc 94 1 in~1 in~1 NNP cord-318057-xagh68jc 94 2 % % NN cord-318057-xagh68jc 94 3 of of IN cord-318057-xagh68jc 94 4 throat throat NN cord-318057-xagh68jc 94 5 and and CC cord-318057-xagh68jc 94 6 nasal nasal NN cord-318057-xagh68jc 94 7 swabs swab NNS cord-318057-xagh68jc 94 8 submitted submit VBN cord-318057-xagh68jc 94 9 to to IN cord-318057-xagh68jc 94 10 our -PRON- PRP$ cord-318057-xagh68jc 94 11 laboratory laboratory NN cord-318057-xagh68jc 94 12 . . . cord-318057-xagh68jc 95 1 Poor poor JJ cord-318057-xagh68jc 95 2 sampling sampling NN cord-318057-xagh68jc 95 3 may may MD cord-318057-xagh68jc 95 4 also also RB cord-318057-xagh68jc 95 5 have have VB cord-318057-xagh68jc 95 6 led lead VBN cord-318057-xagh68jc 95 7 to to IN cord-318057-xagh68jc 95 8 false false JJ cord-318057-xagh68jc 95 9 negative negative JJ cord-318057-xagh68jc 95 10 results result NNS cord-318057-xagh68jc 95 11 . . . cord-318057-xagh68jc 96 1 However however RB cord-318057-xagh68jc 96 2 , , , cord-318057-xagh68jc 96 3 as as IN cord-318057-xagh68jc 96 4 with with IN cord-318057-xagh68jc 96 5 the the DT cord-318057-xagh68jc 96 6 case case NN cord-318057-xagh68jc 96 7 of of IN cord-318057-xagh68jc 96 8 inhibition inhibition NN cord-318057-xagh68jc 96 9 , , , cord-318057-xagh68jc 96 10 the the DT cord-318057-xagh68jc 96 11 contribution contribution NN cord-318057-xagh68jc 96 12 of of IN cord-318057-xagh68jc 96 13 this this DT cord-318057-xagh68jc 96 14 factor factor NN cord-318057-xagh68jc 96 15 is be VBZ cord-318057-xagh68jc 96 16 likely likely JJ cord-318057-xagh68jc 96 17 to to TO cord-318057-xagh68jc 96 18 be be VB cord-318057-xagh68jc 96 19 minimal minimal JJ cord-318057-xagh68jc 96 20 . . . cord-318057-xagh68jc 97 1 We -PRON- PRP cord-318057-xagh68jc 97 2 can can MD cord-318057-xagh68jc 97 3 not not RB cord-318057-xagh68jc 97 4 rule rule VB cord-318057-xagh68jc 97 5 out out RP cord-318057-xagh68jc 97 6 that that IN cord-318057-xagh68jc 97 7 the the DT cord-318057-xagh68jc 97 8 possibility possibility NN cord-318057-xagh68jc 97 9 that that IN cord-318057-xagh68jc 97 10 these these DT cord-318057-xagh68jc 97 11 samples sample NNS cord-318057-xagh68jc 97 12 may may MD cord-318057-xagh68jc 97 13 have have VB cord-318057-xagh68jc 97 14 contained contain VBN cord-318057-xagh68jc 97 15 other other JJ cord-318057-xagh68jc 97 16 respiratory respiratory JJ cord-318057-xagh68jc 97 17 pathogens pathogen NNS cord-318057-xagh68jc 97 18 not not RB cord-318057-xagh68jc 97 19 currently currently RB cord-318057-xagh68jc 97 20 included include VBN cord-318057-xagh68jc 97 21 in in IN cord-318057-xagh68jc 97 22 the the DT cord-318057-xagh68jc 97 23 respiratory respiratory JJ cord-318057-xagh68jc 97 24 screen screen NN cord-318057-xagh68jc 97 25 ( ( -LRB- cord-318057-xagh68jc 97 26 e.g. e.g. IN cord-318057-xagh68jc 97 27 boca boca NNP cord-318057-xagh68jc 97 28 , , , cord-318057-xagh68jc 97 29 HKU1 HKU1 NNP cord-318057-xagh68jc 97 30 or or CC cord-318057-xagh68jc 97 31 bacterial bacterial JJ cord-318057-xagh68jc 97 32 respiratory respiratory JJ cord-318057-xagh68jc 97 33 pathogens pathogen NNS cord-318057-xagh68jc 97 34 ) ) -RRB- cord-318057-xagh68jc 97 35 . . . cord-318057-xagh68jc 98 1 In in IN cord-318057-xagh68jc 98 2 future future NN cord-318057-xagh68jc 98 3 , , , cord-318057-xagh68jc 98 4 the the DT cord-318057-xagh68jc 98 5 use use NN cord-318057-xagh68jc 98 6 of of IN cord-318057-xagh68jc 98 7 a a DT cord-318057-xagh68jc 98 8 larger large JJR cord-318057-xagh68jc 98 9 testing testing NN cord-318057-xagh68jc 98 10 panel panel NN cord-318057-xagh68jc 98 11 either either CC cord-318057-xagh68jc 98 12 by by IN cord-318057-xagh68jc 98 13 further further RB cord-318057-xagh68jc 98 14 developing develop VBG cord-318057-xagh68jc 98 15 the the DT cord-318057-xagh68jc 98 16 existing exist VBG cord-318057-xagh68jc 98 17 service service NN cord-318057-xagh68jc 98 18 or or CC cord-318057-xagh68jc 98 19 by by IN cord-318057-xagh68jc 98 20 using use VBG cord-318057-xagh68jc 98 21 an an DT cord-318057-xagh68jc 98 22 alternative alternative JJ cord-318057-xagh68jc 98 23 method method NN cord-318057-xagh68jc 98 24 ( ( -LRB- cord-318057-xagh68jc 98 25 e.g. e.g. IN cord-318057-xagh68jc 98 26 microarray microarray NN cord-318057-xagh68jc 98 27 ) ) -RRB- cord-318057-xagh68jc 98 28 would would MD cord-318057-xagh68jc 98 29 be be VB cord-318057-xagh68jc 98 30 useful useful JJ cord-318057-xagh68jc 98 31 to to TO cord-318057-xagh68jc 98 32 examine examine VB cord-318057-xagh68jc 98 33 negative negative JJ cord-318057-xagh68jc 98 34 samples sample NNS cord-318057-xagh68jc 98 35 . . . cord-318057-xagh68jc 99 1 Another another DT cord-318057-xagh68jc 99 2 possibility possibility NN cord-318057-xagh68jc 99 3 is be VBZ cord-318057-xagh68jc 99 4 that that IN cord-318057-xagh68jc 99 5 other other JJ cord-318057-xagh68jc 99 6 infective infective JJ cord-318057-xagh68jc 99 7 and and CC cord-318057-xagh68jc 99 8 non non JJ cord-318057-xagh68jc 99 9 - - JJ cord-318057-xagh68jc 99 10 infective infective JJ cord-318057-xagh68jc 99 11 agents agent NNS cord-318057-xagh68jc 99 12 could could MD cord-318057-xagh68jc 99 13 have have VB cord-318057-xagh68jc 99 14 been be VBN cord-318057-xagh68jc 99 15 present present JJ cord-318057-xagh68jc 99 16 . . . cord-318057-xagh68jc 100 1 For for IN cord-318057-xagh68jc 100 2 example example NN cord-318057-xagh68jc 100 3 , , , cord-318057-xagh68jc 100 4 the the DT cord-318057-xagh68jc 100 5 previously previously RB cord-318057-xagh68jc 100 6 - - HYPH cord-318057-xagh68jc 100 7 mentioned mention VBN cord-318057-xagh68jc 100 8 audit audit NN cord-318057-xagh68jc 100 9 of of IN cord-318057-xagh68jc 100 10 patients patient NNS cord-318057-xagh68jc 100 11 presenting present VBG cord-318057-xagh68jc 100 12 at at IN cord-318057-xagh68jc 100 13 infectious infectious JJ cord-318057-xagh68jc 100 14 disease disease NN cord-318057-xagh68jc 100 15 units unit NNS cord-318057-xagh68jc 100 16 found find VBD cord-318057-xagh68jc 100 17 an an DT cord-318057-xagh68jc 100 18 alternative alternative JJ cord-318057-xagh68jc 100 19 nonrespiratory nonrespiratory NN cord-318057-xagh68jc 100 20 diagnosis diagnosis NN cord-318057-xagh68jc 100 21 in~40 in~40 NNP cord-318057-xagh68jc 100 22 % % NN cord-318057-xagh68jc 100 23 of of IN cord-318057-xagh68jc 100 24 patients patient NNS cord-318057-xagh68jc 100 25 initially initially RB cord-318057-xagh68jc 100 26 clinically clinically RB cord-318057-xagh68jc 100 27 diagnosed diagnose VBN cord-318057-xagh68jc 100 28 as as IN cord-318057-xagh68jc 100 29 having have VBG cord-318057-xagh68jc 100 30 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 100 31 [ [ -LRB- cord-318057-xagh68jc 100 32 8 8 CD cord-318057-xagh68jc 100 33 ] ] -RRB- cord-318057-xagh68jc 100 34 . . . cord-318057-xagh68jc 101 1 Another another DT cord-318057-xagh68jc 101 2 explanation explanation NN cord-318057-xagh68jc 101 3 could could MD cord-318057-xagh68jc 101 4 be be VB cord-318057-xagh68jc 101 5 that that IN cord-318057-xagh68jc 101 6 a a DT cord-318057-xagh68jc 101 7 number number NN cord-318057-xagh68jc 101 8 of of IN cord-318057-xagh68jc 101 9 samples sample NNS cord-318057-xagh68jc 101 10 were be VBD cord-318057-xagh68jc 101 11 actually actually RB cord-318057-xagh68jc 101 12 from from IN cord-318057-xagh68jc 101 13 the the DT cord-318057-xagh68jc 101 14 worried worried JJ cord-318057-xagh68jc 101 15 well well RB cord-318057-xagh68jc 101 16 , , , cord-318057-xagh68jc 101 17 or or CC cord-318057-xagh68jc 101 18 from from IN cord-318057-xagh68jc 101 19 asymptomatic asymptomatic JJ cord-318057-xagh68jc 101 20 contacts contact NNS cord-318057-xagh68jc 101 21 of of IN cord-318057-xagh68jc 101 22 known know VBN cord-318057-xagh68jc 101 23 or or CC cord-318057-xagh68jc 101 24 suspected suspect VBN cord-318057-xagh68jc 101 25 cases case NNS cord-318057-xagh68jc 101 26 of of IN cord-318057-xagh68jc 101 27 H1N1/2009 h1n1/2009 NN cord-318057-xagh68jc 101 28 . . . cord-318057-xagh68jc 102 1 An an DT cord-318057-xagh68jc 102 2 audit audit NN cord-318057-xagh68jc 102 3 similar similar JJ cord-318057-xagh68jc 102 4 to to IN cord-318057-xagh68jc 102 5 the the DT cord-318057-xagh68jc 102 6 one one NN cord-318057-xagh68jc 102 7 outlined outline VBN cord-318057-xagh68jc 102 8 in in IN cord-318057-xagh68jc 102 9 the the DT cord-318057-xagh68jc 102 10 publication publication NN cord-318057-xagh68jc 102 11 above above IN cord-318057-xagh68jc 102 12 [ [ -LRB- cord-318057-xagh68jc 102 13 8 8 CD cord-318057-xagh68jc 102 14 ] ] -RRB- cord-318057-xagh68jc 102 15 would would MD cord-318057-xagh68jc 102 16 help help VB cord-318057-xagh68jc 102 17 to to TO cord-318057-xagh68jc 102 18 clarify clarify VB cord-318057-xagh68jc 102 19 this this DT cord-318057-xagh68jc 102 20 issue issue NN cord-318057-xagh68jc 102 21 . . . cord-318057-xagh68jc 103 1 It -PRON- PRP cord-318057-xagh68jc 103 2 should should MD cord-318057-xagh68jc 103 3 be be VB cord-318057-xagh68jc 103 4 noted note VBN cord-318057-xagh68jc 103 5 that that IN cord-318057-xagh68jc 103 6 the the DT cord-318057-xagh68jc 103 7 samples sample NNS cord-318057-xagh68jc 103 8 examined examine VBN cord-318057-xagh68jc 103 9 are be VBP cord-318057-xagh68jc 103 10 representative representative JJ cord-318057-xagh68jc 103 11 of of IN cord-318057-xagh68jc 103 12 our -PRON- PRP$ cord-318057-xagh68jc 103 13 coding code VBG cord-318057-xagh68jc 103 14 protocol protocol NN cord-318057-xagh68jc 103 15 and and CC cord-318057-xagh68jc 103 16 may may MD cord-318057-xagh68jc 103 17 not not RB cord-318057-xagh68jc 103 18 be be VB cord-318057-xagh68jc 103 19 representative representative JJ cord-318057-xagh68jc 103 20 of of IN cord-318057-xagh68jc 103 21 the the DT cord-318057-xagh68jc 103 22 population population NN cord-318057-xagh68jc 103 23 at at IN cord-318057-xagh68jc 103 24 large large JJ cord-318057-xagh68jc 103 25 . . . cord-318057-xagh68jc 104 1 Consequently consequently RB cord-318057-xagh68jc 104 2 , , , cord-318057-xagh68jc 104 3 certain certain JJ cord-318057-xagh68jc 104 4 patient patient JJ cord-318057-xagh68jc 104 5 groups group NNS cord-318057-xagh68jc 104 6 either either CC cord-318057-xagh68jc 104 7 with with IN cord-318057-xagh68jc 104 8 or or CC cord-318057-xagh68jc 104 9 at at IN cord-318057-xagh68jc 104 10 risk risk NN cord-318057-xagh68jc 104 11 of of IN cord-318057-xagh68jc 104 12 severe severe JJ cord-318057-xagh68jc 104 13 infection infection NN cord-318057-xagh68jc 104 14 may may MD cord-318057-xagh68jc 104 15 be be VB cord-318057-xagh68jc 104 16 over over RB cord-318057-xagh68jc 104 17 - - HYPH cord-318057-xagh68jc 104 18 represented represent VBN cord-318057-xagh68jc 104 19 in in IN cord-318057-xagh68jc 104 20 the the DT cord-318057-xagh68jc 104 21 final final JJ cord-318057-xagh68jc 104 22 data datum NNS cord-318057-xagh68jc 104 23 . . . cord-318057-xagh68jc 105 1 Whether whether IN cord-318057-xagh68jc 105 2 or or CC cord-318057-xagh68jc 105 3 not not RB cord-318057-xagh68jc 105 4 this this DT cord-318057-xagh68jc 105 5 is be VBZ cord-318057-xagh68jc 105 6 the the DT cord-318057-xagh68jc 105 7 case case NN cord-318057-xagh68jc 105 8 , , , cord-318057-xagh68jc 105 9 the the DT cord-318057-xagh68jc 105 10 present present JJ cord-318057-xagh68jc 105 11 study study NN cord-318057-xagh68jc 105 12 shows show VBZ cord-318057-xagh68jc 105 13 that that IN cord-318057-xagh68jc 105 14 numerous numerous JJ cord-318057-xagh68jc 105 15 respiratory respiratory JJ cord-318057-xagh68jc 105 16 pathogens pathogen NNS cord-318057-xagh68jc 105 17 were be VBD cord-318057-xagh68jc 105 18 being be VBG cord-318057-xagh68jc 105 19 misdiagnosed misdiagnose VBN cord-318057-xagh68jc 105 20 as as IN cord-318057-xagh68jc 105 21 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 105 22 . . . cord-318057-xagh68jc 106 1 The the DT cord-318057-xagh68jc 106 2 misdiagnosis misdiagnosis NN cord-318057-xagh68jc 106 3 of of IN cord-318057-xagh68jc 106 4 H1N1/ H1N1/ NNP cord-318057-xagh68jc 106 5 2009 2009 CD cord-318057-xagh68jc 106 6 would would MD cord-318057-xagh68jc 106 7 have have VB cord-318057-xagh68jc 106 8 had have VBN cord-318057-xagh68jc 106 9 many many JJ cord-318057-xagh68jc 106 10 undesirable undesirable JJ cord-318057-xagh68jc 106 11 consequences consequence NNS cord-318057-xagh68jc 106 12 . . . cord-318057-xagh68jc 107 1 For for IN cord-318057-xagh68jc 107 2 example example NN cord-318057-xagh68jc 107 3 , , , cord-318057-xagh68jc 107 4 potentially potentially RB cord-318057-xagh68jc 107 5 serious serious JJ cord-318057-xagh68jc 107 6 conditions condition NNS cord-318057-xagh68jc 107 7 may may MD cord-318057-xagh68jc 107 8 have have VB cord-318057-xagh68jc 107 9 been be VBN cord-318057-xagh68jc 107 10 wrongly wrongly RB cord-318057-xagh68jc 107 11 diagnosed diagnose VBN cord-318057-xagh68jc 107 12 as as IN cord-318057-xagh68jc 107 13 H1N1/2009 H1N1/2009 NNP cord-318057-xagh68jc 107 14 [ [ -LRB- cord-318057-xagh68jc 107 15 8 8 CD cord-318057-xagh68jc 107 16 ] ] -RRB- cord-318057-xagh68jc 107 17 . . . cord-318057-xagh68jc 108 1 In in IN cord-318057-xagh68jc 108 2 addition addition NN cord-318057-xagh68jc 108 3 a a DT cord-318057-xagh68jc 108 4 large large JJ cord-318057-xagh68jc 108 5 number number NN cord-318057-xagh68jc 108 6 of of IN cord-318057-xagh68jc 108 7 individuals individual NNS cord-318057-xagh68jc 108 8 are be VBP cord-318057-xagh68jc 108 9 likely likely JJ cord-318057-xagh68jc 108 10 to to TO cord-318057-xagh68jc 108 11 have have VB cord-318057-xagh68jc 108 12 been be VBN cord-318057-xagh68jc 108 13 unnecessarily unnecessarily RB cord-318057-xagh68jc 108 14 treated treat VBN cord-318057-xagh68jc 108 15 with with IN cord-318057-xagh68jc 108 16 oseltamivir oseltamivir NNS cord-318057-xagh68jc 108 17 [ [ -LRB- cord-318057-xagh68jc 108 18 10 10 CD cord-318057-xagh68jc 108 19 ] ] -RRB- cord-318057-xagh68jc 108 20 . . . cord-318057-xagh68jc 109 1 This this DT cord-318057-xagh68jc 109 2 involves involve VBZ cord-318057-xagh68jc 109 3 unnecessary unnecessary JJ cord-318057-xagh68jc 109 4 cost cost NN cord-318057-xagh68jc 109 5 , , , cord-318057-xagh68jc 109 6 and and CC cord-318057-xagh68jc 109 7 would would MD cord-318057-xagh68jc 109 8 also also RB cord-318057-xagh68jc 109 9 have have VB cord-318057-xagh68jc 109 10 exposed expose VBN cord-318057-xagh68jc 109 11 individuals individual NNS cord-318057-xagh68jc 109 12 to to IN cord-318057-xagh68jc 109 13 the the DT cord-318057-xagh68jc 109 14 side side JJ cord-318057-xagh68jc 109 15 effects effect NNS cord-318057-xagh68jc 109 16 of of IN cord-318057-xagh68jc 109 17 oseltamivir oseltamivir NNS cord-318057-xagh68jc 109 18 [ [ -LRB- cord-318057-xagh68jc 109 19 11 11 CD cord-318057-xagh68jc 109 20 ] ] -RRB- cord-318057-xagh68jc 109 21 . . . cord-318057-xagh68jc 110 1 It -PRON- PRP cord-318057-xagh68jc 110 2 should should MD cord-318057-xagh68jc 110 3 further further RB cord-318057-xagh68jc 110 4 be be VB cord-318057-xagh68jc 110 5 noted note VBN cord-318057-xagh68jc 110 6 that that IN cord-318057-xagh68jc 110 7 there there EX cord-318057-xagh68jc 110 8 could could MD cord-318057-xagh68jc 110 9 well well RB cord-318057-xagh68jc 110 10 have have VB cord-318057-xagh68jc 110 11 been be VBN cord-318057-xagh68jc 110 12 emotional emotional JJ cord-318057-xagh68jc 110 13 costs cost NNS cord-318057-xagh68jc 110 14 in in IN cord-318057-xagh68jc 110 15 being be VBG cord-318057-xagh68jc 110 16 wrongly wrongly RB cord-318057-xagh68jc 110 17 labelled label VBN cord-318057-xagh68jc 110 18 as as IN cord-318057-xagh68jc 110 19 having have VBG cord-318057-xagh68jc 110 20 " " `` cord-318057-xagh68jc 110 21 swine swine NN cord-318057-xagh68jc 110 22 flu flu NN cord-318057-xagh68jc 110 23 " " '' cord-318057-xagh68jc 110 24 , , , cord-318057-xagh68jc 110 25 especially especially RB cord-318057-xagh68jc 110 26 at at IN cord-318057-xagh68jc 110 27 the the DT cord-318057-xagh68jc 110 28 early early JJ cord-318057-xagh68jc 110 29 stage stage NN cord-318057-xagh68jc 110 30 of of IN cord-318057-xagh68jc 110 31 the the DT cord-318057-xagh68jc 110 32 pandemic pandemic NN cord-318057-xagh68jc 110 33 , , , cord-318057-xagh68jc 110 34 when when WRB cord-318057-xagh68jc 110 35 the the DT cord-318057-xagh68jc 110 36 severity severity NN cord-318057-xagh68jc 110 37 and and CC cord-318057-xagh68jc 110 38 outcome outcome NN cord-318057-xagh68jc 110 39 of of IN cord-318057-xagh68jc 110 40 the the DT cord-318057-xagh68jc 110 41 illness illness NN cord-318057-xagh68jc 110 42 was be VBD cord-318057-xagh68jc 110 43 still still RB cord-318057-xagh68jc 110 44 largely largely RB cord-318057-xagh68jc 110 45 unknown unknown JJ cord-318057-xagh68jc 110 46 . . . cord-318057-xagh68jc 111 1 In in IN cord-318057-xagh68jc 111 2 hospitalised hospitalise VBN cord-318057-xagh68jc 111 3 patients patient NNS cord-318057-xagh68jc 111 4 , , , cord-318057-xagh68jc 111 5 unnecessary unnecessary JJ cord-318057-xagh68jc 111 6 infection infection NN cord-318057-xagh68jc 111 7 control control NN cord-318057-xagh68jc 111 8 procedures procedure NNS cord-318057-xagh68jc 111 9 may may MD cord-318057-xagh68jc 111 10 have have VB cord-318057-xagh68jc 111 11 been be VBN cord-318057-xagh68jc 111 12 implemented implement VBN cord-318057-xagh68jc 111 13 [ [ -LRB- cord-318057-xagh68jc 111 14 10 10 CD cord-318057-xagh68jc 111 15 ] ] -RRB- cord-318057-xagh68jc 112 1 [ [ -LRB- cord-318057-xagh68jc 112 2 11 11 CD cord-318057-xagh68jc 112 3 ] ] -RRB- cord-318057-xagh68jc 112 4 [ [ -LRB- cord-318057-xagh68jc 112 5 12 12 CD cord-318057-xagh68jc 112 6 ] ] -RRB- cord-318057-xagh68jc 112 7 . . . cord-318057-xagh68jc 113 1 Disease disease NN cord-318057-xagh68jc 113 2 surveillance surveillance NN cord-318057-xagh68jc 113 3 may may MD cord-318057-xagh68jc 113 4 also also RB cord-318057-xagh68jc 113 5 have have VB cord-318057-xagh68jc 113 6 been be VBN cord-318057-xagh68jc 113 7 inaccurate inaccurate JJ cord-318057-xagh68jc 113 8 , , , cord-318057-xagh68jc 113 9 affecting affect VBG cord-318057-xagh68jc 113 10 public public JJ cord-318057-xagh68jc 113 11 health health NN cord-318057-xagh68jc 113 12 measures measure NNS cord-318057-xagh68jc 113 13 and and CC cord-318057-xagh68jc 113 14 leading lead VBG cord-318057-xagh68jc 113 15 to to IN cord-318057-xagh68jc 113 16 increased increase VBN cord-318057-xagh68jc 113 17 panic panic NN cord-318057-xagh68jc 113 18 / / SYM cord-318057-xagh68jc 113 19 concern concern NN cord-318057-xagh68jc 113 20 in in IN cord-318057-xagh68jc 113 21 the the DT cord-318057-xagh68jc 113 22 general general JJ cord-318057-xagh68jc 113 23 public public NN cord-318057-xagh68jc 113 24 . . . cord-318057-xagh68jc 114 1 One one CD cord-318057-xagh68jc 114 2 way way NN cord-318057-xagh68jc 114 3 to to TO cord-318057-xagh68jc 114 4 overcome overcome VB cord-318057-xagh68jc 114 5 these these DT cord-318057-xagh68jc 114 6 issues issue NNS cord-318057-xagh68jc 114 7 would would MD cord-318057-xagh68jc 114 8 be be VB cord-318057-xagh68jc 114 9 to to TO cord-318057-xagh68jc 114 10 incorporate incorporate VB cord-318057-xagh68jc 114 11 a a DT cord-318057-xagh68jc 114 12 near near JJ cord-318057-xagh68jc 114 13 - - HYPH cord-318057-xagh68jc 114 14 patient patient NN cord-318057-xagh68jc 114 15 testing testing NN cord-318057-xagh68jc 114 16 component component NN cord-318057-xagh68jc 114 17 into into IN cord-318057-xagh68jc 114 18 the the DT cord-318057-xagh68jc 114 19 algorithm algorithm NN cord-318057-xagh68jc 114 20 outlined outline VBN cord-318057-xagh68jc 114 21 above above RB cord-318057-xagh68jc 114 22 . . . cord-318057-xagh68jc 115 1 This this DT cord-318057-xagh68jc 115 2 would would MD cord-318057-xagh68jc 115 3 no no RB cord-318057-xagh68jc 115 4 doubt doubt RB cord-318057-xagh68jc 115 5 reduce reduce VB cord-318057-xagh68jc 115 6 the the DT cord-318057-xagh68jc 115 7 amount amount NN cord-318057-xagh68jc 115 8 of of IN cord-318057-xagh68jc 115 9 unnecessary unnecessary JJ cord-318057-xagh68jc 115 10 treatment treatment NN cord-318057-xagh68jc 115 11 and and CC cord-318057-xagh68jc 115 12 isolation isolation NN cord-318057-xagh68jc 115 13 , , , cord-318057-xagh68jc 115 14 and and CC cord-318057-xagh68jc 115 15 would would MD cord-318057-xagh68jc 115 16 ensure ensure VB cord-318057-xagh68jc 115 17 that that IN cord-318057-xagh68jc 115 18 surveillance surveillance NN cord-318057-xagh68jc 115 19 data datum NNS cord-318057-xagh68jc 115 20 was be VBD cord-318057-xagh68jc 115 21 more more RBR cord-318057-xagh68jc 115 22 accurate accurate JJ cord-318057-xagh68jc 115 23 . . . cord-318057-xagh68jc 116 1 Such such JJ cord-318057-xagh68jc 116 2 a a DT cord-318057-xagh68jc 116 3 test test NN cord-318057-xagh68jc 116 4 would would MD cord-318057-xagh68jc 116 5 need need VB cord-318057-xagh68jc 116 6 to to TO cord-318057-xagh68jc 116 7 be be VB cord-318057-xagh68jc 116 8 very very RB cord-318057-xagh68jc 116 9 rapid rapid JJ cord-318057-xagh68jc 116 10 , , , cord-318057-xagh68jc 116 11 sensitive sensitive JJ cord-318057-xagh68jc 116 12 , , , cord-318057-xagh68jc 116 13 and and CC cord-318057-xagh68jc 116 14 specific specific JJ cord-318057-xagh68jc 116 15 . . . cord-318057-xagh68jc 117 1 Although although IN cord-318057-xagh68jc 117 2 a a DT cord-318057-xagh68jc 117 3 number number NN cord-318057-xagh68jc 117 4 of of IN cord-318057-xagh68jc 117 5 methods method NNS cord-318057-xagh68jc 117 6 have have VBP cord-318057-xagh68jc 117 7 been be VBN cord-318057-xagh68jc 117 8 described describe VBN cord-318057-xagh68jc 117 9 , , , cord-318057-xagh68jc 117 10 these these DT cord-318057-xagh68jc 117 11 can can MD cord-318057-xagh68jc 117 12 be be VB cord-318057-xagh68jc 117 13 expensive expensive JJ cord-318057-xagh68jc 117 14 and and CC cord-318057-xagh68jc 117 15 -in -in IN cord-318057-xagh68jc 117 16 comparison comparison NN cord-318057-xagh68jc 117 17 to to IN cord-318057-xagh68jc 117 18 PCR PCR NNP cord-318057-xagh68jc 117 19 - - HYPH cord-318057-xagh68jc 117 20 based base VBN cord-318057-xagh68jc 117 21 methods method NNS cord-318057-xagh68jc 117 22 -can -can -LRB- cord-318057-xagh68jc 117 23 be be VB cord-318057-xagh68jc 117 24 insensitive insensitive JJ cord-318057-xagh68jc 117 25 and and CC cord-318057-xagh68jc 117 26 non non JJ cord-318057-xagh68jc 117 27 - - JJ cord-318057-xagh68jc 117 28 specific specific JJ cord-318057-xagh68jc 117 29 [ [ -LRB- cord-318057-xagh68jc 117 30 13 13 CD cord-318057-xagh68jc 117 31 ] ] -RRB- cord-318057-xagh68jc 117 32 . . . cord-318057-xagh68jc 118 1 As as IN cord-318057-xagh68jc 118 2 a a DT cord-318057-xagh68jc 118 3 result result NN cord-318057-xagh68jc 118 4 , , , cord-318057-xagh68jc 118 5 PCR PCR NNP cord-318057-xagh68jc 118 6 methods method NNS cord-318057-xagh68jc 118 7 may may MD cord-318057-xagh68jc 118 8 be be VB cord-318057-xagh68jc 118 9 required require VBN cord-318057-xagh68jc 118 10 to to TO cord-318057-xagh68jc 118 11 investigate investigate VB cord-318057-xagh68jc 118 12 influenza influenza NN cord-318057-xagh68jc 118 13 negative negative JJ cord-318057-xagh68jc 118 14 samples sample NNS cord-318057-xagh68jc 118 15 and and CC cord-318057-xagh68jc 118 16 in in IN cord-318057-xagh68jc 118 17 low low JJ cord-318057-xagh68jc 118 18 prevalence prevalence NN cord-318057-xagh68jc 118 19 periods period NNS cord-318057-xagh68jc 118 20 , , , cord-318057-xagh68jc 118 21 such such JJ cord-318057-xagh68jc 118 22 as as IN cord-318057-xagh68jc 118 23 the the DT cord-318057-xagh68jc 118 24 time time NN cord-318057-xagh68jc 118 25 period period NN cord-318057-xagh68jc 118 26 examined examine VBN cord-318057-xagh68jc 118 27 in in IN cord-318057-xagh68jc 118 28 this this DT cord-318057-xagh68jc 118 29 study study NN cord-318057-xagh68jc 118 30 , , , cord-318057-xagh68jc 118 31 PCR PCR NNP cord-318057-xagh68jc 118 32 may may MD cord-318057-xagh68jc 118 33 also also RB cord-318057-xagh68jc 118 34 be be VB cord-318057-xagh68jc 118 35 required require VBN cord-318057-xagh68jc 118 36 to to TO cord-318057-xagh68jc 118 37 confirm confirm VB cord-318057-xagh68jc 118 38 positive positive JJ cord-318057-xagh68jc 118 39 results result NNS cord-318057-xagh68jc 118 40 . . . cord-318057-xagh68jc 119 1 CDC CDC NNP cord-318057-xagh68jc 119 2 : : : cord-318057-xagh68jc 119 3 Update update NN cord-318057-xagh68jc 119 4 : : : cord-318057-xagh68jc 119 5 infections infection NNS cord-318057-xagh68jc 119 6 with with IN cord-318057-xagh68jc 119 7 a a DT cord-318057-xagh68jc 119 8 swine swine NN cord-318057-xagh68jc 119 9 - - HYPH cord-318057-xagh68jc 119 10 origin origin NN cord-318057-xagh68jc 119 11 influenza influenza NN cord-318057-xagh68jc 119 12 A A NNP cord-318057-xagh68jc 119 13 ( ( -LRB- cord-318057-xagh68jc 119 14 H1N1 H1N1 NNP cord-318057-xagh68jc 119 15 ) ) -RRB- cord-318057-xagh68jc 119 16 virus virus NN cord-318057-xagh68jc 119 17 - - : cord-318057-xagh68jc 119 18 United United NNP cord-318057-xagh68jc 119 19 States States NNP cord-318057-xagh68jc 119 20 and and CC cord-318057-xagh68jc 119 21 other other JJ cord-318057-xagh68jc 119 22 countries country NNS cord-318057-xagh68jc 120 1 Novel Novel NNP cord-318057-xagh68jc 120 2 Swine Swine NNP cord-318057-xagh68jc 120 3 - - HYPH cord-318057-xagh68jc 120 4 Origin Origin NNP cord-318057-xagh68jc 120 5 Influenza Influenza NNP cord-318057-xagh68jc 120 6 A A NNP cord-318057-xagh68jc 120 7 ( ( -LRB- cord-318057-xagh68jc 120 8 H1N1 H1N1 NNP cord-318057-xagh68jc 120 9 ) ) -RRB- cord-318057-xagh68jc 120 10 Virus Virus NNP cord-318057-xagh68jc 120 11 Investigation Investigation NNP cord-318057-xagh68jc 120 12 Team Team NNP cord-318057-xagh68jc 120 13 : : : cord-318057-xagh68jc 120 14 Emergence emergence NN cord-318057-xagh68jc 120 15 of of IN cord-318057-xagh68jc 120 16 a a DT cord-318057-xagh68jc 120 17 Novel Novel NNP cord-318057-xagh68jc 120 18 Swine Swine NNP cord-318057-xagh68jc 120 19 - - HYPH cord-318057-xagh68jc 120 20 Origin Origin NNP cord-318057-xagh68jc 120 21 Influenza Influenza NNP cord-318057-xagh68jc 120 22 A A NNP cord-318057-xagh68jc 120 23 ( ( -LRB- cord-318057-xagh68jc 120 24 H1N1 H1N1 NNP cord-318057-xagh68jc 120 25 ) ) -RRB- cord-318057-xagh68jc 120 26 Virus virus NN cord-318057-xagh68jc 120 27 in in IN cord-318057-xagh68jc 120 28 Humans Humans NNP cord-318057-xagh68jc 120 29 Swine Swine NNP cord-318057-xagh68jc 120 30 flu flu NN cord-318057-xagh68jc 120 31 . . . cord-318057-xagh68jc 121 1 After after IN cord-318057-xagh68jc 121 2 delays delay NNS cord-318057-xagh68jc 121 3 , , , cord-318057-xagh68jc 121 4 WHO who WP cord-318057-xagh68jc 121 5 agrees agree VBZ cord-318057-xagh68jc 121 6 : : : cord-318057-xagh68jc 121 7 the the DT cord-318057-xagh68jc 121 8 2009 2009 CD cord-318057-xagh68jc 121 9 pandemic pandemic NN cord-318057-xagh68jc 121 10 has have VBZ cord-318057-xagh68jc 121 11 begun begin VBN cord-318057-xagh68jc 121 12 Health Health NNP cord-318057-xagh68jc 121 13 Protection Protection NNP cord-318057-xagh68jc 121 14 Agency Agency NNP cord-318057-xagh68jc 121 15 ; ; : cord-318057-xagh68jc 121 16 Health Health NNP cord-318057-xagh68jc 121 17 Protection Protection NNP cord-318057-xagh68jc 121 18 Scotland Scotland NNP cord-318057-xagh68jc 121 19 ; ; : cord-318057-xagh68jc 121 20 National National NNP cord-318057-xagh68jc 121 21 Public Public NNP cord-318057-xagh68jc 121 22 Health Health NNP cord-318057-xagh68jc 121 23 Service Service NNP cord-318057-xagh68jc 121 24 for for IN cord-318057-xagh68jc 121 25 Wales Wales NNP cord-318057-xagh68jc 121 26 ; ; : cord-318057-xagh68jc 121 27 HPA HPA NNP cord-318057-xagh68jc 121 28 Northern Northern NNP cord-318057-xagh68jc 121 29 Ireland Ireland NNP cord-318057-xagh68jc 121 30 Swine Swine NNP cord-318057-xagh68jc 121 31 influenza influenza NN cord-318057-xagh68jc 121 32 investigation investigation NN cord-318057-xagh68jc 121 33 teams team NNS cord-318057-xagh68jc 121 34 : : : cord-318057-xagh68jc 122 1 Epidemiology epidemiology NN cord-318057-xagh68jc 122 2 of of IN cord-318057-xagh68jc 123 1 new new JJ cord-318057-xagh68jc 123 2 influenza influenza NN cord-318057-xagh68jc 123 3 A A NNP cord-318057-xagh68jc 123 4 ( ( -LRB- cord-318057-xagh68jc 123 5 H1N1 H1N1 NNP cord-318057-xagh68jc 123 6 ) ) -RRB- cord-318057-xagh68jc 123 7 virus virus NN cord-318057-xagh68jc 123 8 infection infection NN cord-318057-xagh68jc 123 9 A a NN cord-318057-xagh68jc 123 10 : : : cord-318057-xagh68jc 123 11 Confirmation confirmation NN cord-318057-xagh68jc 123 12 of of IN cord-318057-xagh68jc 123 13 first first JJ cord-318057-xagh68jc 123 14 person person NN cord-318057-xagh68jc 123 15 to to IN cord-318057-xagh68jc 123 16 person person NN cord-318057-xagh68jc 123 17 transmission transmission NN cord-318057-xagh68jc 123 18 of of IN cord-318057-xagh68jc 123 19 swine swine NN cord-318057-xagh68jc 123 20 flu flu NN cord-318057-xagh68jc 123 21 in in IN cord-318057-xagh68jc 123 22 UK UK NNP cord-318057-xagh68jc 123 23 expected expect VBD cord-318057-xagh68jc 123 24 soon soon RB cord-318057-xagh68jc 123 25 How how WRB cord-318057-xagh68jc 123 26 well well RB cord-318057-xagh68jc 123 27 are be VBP cord-318057-xagh68jc 123 28 we -PRON- PRP cord-318057-xagh68jc 123 29 managing manage VBG cord-318057-xagh68jc 123 30 the the DT cord-318057-xagh68jc 123 31 influenza influenza NN cord-318057-xagh68jc 123 32 A A NNP cord-318057-xagh68jc 123 33 / / SYM cord-318057-xagh68jc 123 34 H1N1 H1N1 NNP cord-318057-xagh68jc 123 35 pandemic pandemic NN cord-318057-xagh68jc 123 36 in in IN cord-318057-xagh68jc 123 37 the the DT cord-318057-xagh68jc 123 38 UK UK NNP cord-318057-xagh68jc 123 39 ? ? . cord-318057-xagh68jc 124 1 Development development NN cord-318057-xagh68jc 124 2 of of IN cord-318057-xagh68jc 124 3 a a DT cord-318057-xagh68jc 124 4 real real JJ cord-318057-xagh68jc 124 5 - - HYPH cord-318057-xagh68jc 124 6 time time NN cord-318057-xagh68jc 124 7 RT rt NN cord-318057-xagh68jc 124 8 - - HYPH cord-318057-xagh68jc 124 9 PCR PCR NNP cord-318057-xagh68jc 124 10 for for IN cord-318057-xagh68jc 124 11 the the DT cord-318057-xagh68jc 124 12 detection detection NN cord-318057-xagh68jc 124 13 of of IN cord-318057-xagh68jc 124 14 swine swine NN cord-318057-xagh68jc 124 15 - - HYPH cord-318057-xagh68jc 124 16 lineage lineage NN cord-318057-xagh68jc 124 17 influenza influenza NN cord-318057-xagh68jc 124 18 A a NN cord-318057-xagh68jc 124 19 ( ( -LRB- cord-318057-xagh68jc 124 20 H1N1 H1N1 NNP cord-318057-xagh68jc 124 21 ) ) -RRB- cord-318057-xagh68jc 124 22 virus virus NN cord-318057-xagh68jc 124 23 infections infection NNS cord-318057-xagh68jc 125 1 Hospitalised hospitalised JJ cord-318057-xagh68jc 125 2 adult adult NN cord-318057-xagh68jc 125 3 patients patient NNS cord-318057-xagh68jc 125 4 with with IN cord-318057-xagh68jc 125 5 Suspected suspect VBN cord-318057-xagh68jc 125 6 2009 2009 CD cord-318057-xagh68jc 125 7 H1N1 H1N1 NNP cord-318057-xagh68jc 125 8 Infection Infection NNP cord-318057-xagh68jc 125 9 at at IN cord-318057-xagh68jc 125 10 Regional Regional NNP cord-318057-xagh68jc 125 11 Infectious Infectious NNP cord-318057-xagh68jc 125 12 Diseases Diseases NNPS cord-318057-xagh68jc 125 13 Units Units NNPS cord-318057-xagh68jc 125 14 in in IN cord-318057-xagh68jc 125 15 Scotland Scotland NNP cord-318057-xagh68jc 126 1 -Most -most NN cord-318057-xagh68jc 126 2 had have VBD cord-318057-xagh68jc 126 3 alternative alternative JJ cord-318057-xagh68jc 126 4 final final JJ cord-318057-xagh68jc 126 5 diagnoses diagnosis NNS cord-318057-xagh68jc 126 6 Newly newly RB cord-318057-xagh68jc 126 7 identified identify VBD cord-318057-xagh68jc 126 8 human human JJ cord-318057-xagh68jc 126 9 rhinoviruses rhinovirus NNS cord-318057-xagh68jc 126 10 : : : cord-318057-xagh68jc 127 1 molecular molecular JJ cord-318057-xagh68jc 127 2 methods method NNS cord-318057-xagh68jc 127 3 heat heat VBP cord-318057-xagh68jc 127 4 up up RP cord-318057-xagh68jc 127 5 the the DT cord-318057-xagh68jc 127 6 cold cold JJ cord-318057-xagh68jc 127 7 viruses virus NNS cord-318057-xagh68jc 127 8 How how WRB cord-318057-xagh68jc 127 9 well well RB cord-318057-xagh68jc 127 10 are be VBP cord-318057-xagh68jc 127 11 we -PRON- PRP cord-318057-xagh68jc 127 12 actually actually RB cord-318057-xagh68jc 127 13 managing manage VBG cord-318057-xagh68jc 127 14 the the DT cord-318057-xagh68jc 127 15 influenza influenza NN cord-318057-xagh68jc 127 16 pandemic pandemic NN cord-318057-xagh68jc 127 17 ? ? . cord-318057-xagh68jc 128 1 Perhaps perhaps RB cord-318057-xagh68jc 128 2 not not RB cord-318057-xagh68jc 128 3 so so RB cord-318057-xagh68jc 128 4 well well RB cord-318057-xagh68jc 128 5 Possible possible JJ cord-318057-xagh68jc 128 6 harms harm NNS cord-318057-xagh68jc 128 7 of of IN cord-318057-xagh68jc 128 8 oseltamivir oseltamivir NN cord-318057-xagh68jc 128 9 - - : cord-318057-xagh68jc 128 10 a a DT cord-318057-xagh68jc 128 11 call call NN cord-318057-xagh68jc 128 12 for for IN cord-318057-xagh68jc 128 13 urgent urgent JJ cord-318057-xagh68jc 128 14 action action NN cord-318057-xagh68jc 128 15 Clinical clinical JJ cord-318057-xagh68jc 128 16 diagnostic diagnostic JJ cord-318057-xagh68jc 128 17 criteria criterion NNS cord-318057-xagh68jc 128 18 for for IN cord-318057-xagh68jc 128 19 isolating isolate VBG cord-318057-xagh68jc 128 20 patients patient NNS cord-318057-xagh68jc 128 21 admitted admit VBN cord-318057-xagh68jc 128 22 to to IN cord-318057-xagh68jc 128 23 hospital hospital NN cord-318057-xagh68jc 128 24 with with IN cord-318057-xagh68jc 128 25 suspected suspect VBN cord-318057-xagh68jc 128 26 pandemic pandemic NN cord-318057-xagh68jc 128 27 influenza influenza NN cord-318057-xagh68jc 128 28 Performance performance NN cord-318057-xagh68jc 128 29 of of IN cord-318057-xagh68jc 128 30 influenza influenza NN cord-318057-xagh68jc 128 31 rapid rapid JJ cord-318057-xagh68jc 128 32 point point NN cord-318057-xagh68jc 128 33 - - HYPH cord-318057-xagh68jc 128 34 of of IN cord-318057-xagh68jc 128 35 - - HYPH cord-318057-xagh68jc 128 36 care care NN cord-318057-xagh68jc 128 37 tests test NNS cord-318057-xagh68jc 128 38 in in IN cord-318057-xagh68jc 128 39 the the DT cord-318057-xagh68jc 128 40 detection detection NN cord-318057-xagh68jc 128 41 of of IN cord-318057-xagh68jc 128 42 swine swine NN cord-318057-xagh68jc 128 43 lineage lineage NN cord-318057-xagh68jc 128 44 A A NNP cord-318057-xagh68jc 128 45 ( ( -LRB- cord-318057-xagh68jc 128 46 H1N1 H1N1 NNP cord-318057-xagh68jc 128 47 ) ) -RRB- cord-318057-xagh68jc 128 48 influenza influenza NN cord-318057-xagh68jc 128 49 viruses virus NNS cord-318057-xagh68jc 128 50 Pre pre JJ cord-318057-xagh68jc 128 51 - - JJ cord-318057-xagh68jc 128 52 publication publication JJ cord-318057-xagh68jc 128 53 history history NN cord-318057-xagh68jc 129 1 The the DT cord-318057-xagh68jc 129 2 pre pre JJ cord-318057-xagh68jc 129 3 - - JJ cord-318057-xagh68jc 129 4 publication publication JJ cord-318057-xagh68jc 129 5 history history NN cord-318057-xagh68jc 129 6 for for IN cord-318057-xagh68jc 129 7 this this DT cord-318057-xagh68jc 129 8 paper paper NN cord-318057-xagh68jc 129 9 can can MD cord-318057-xagh68jc 129 10 be be VB cord-318057-xagh68jc 129 11 accessed access VBN cord-318057-xagh68jc 129 12 here here RB cord-318057-xagh68jc 129 13 Cite cite NN cord-318057-xagh68jc 129 14 this this DT cord-318057-xagh68jc 129 15 article article NN cord-318057-xagh68jc 129 16 as as IN cord-318057-xagh68jc 129 17 : : : cord-318057-xagh68jc 129 18 Gunson Gunson NNP cord-318057-xagh68jc 129 19 and and CC cord-318057-xagh68jc 129 20 Carman Carman NNP cord-318057-xagh68jc 129 21 : : : cord-318057-xagh68jc 130 1 During during IN cord-318057-xagh68jc 130 2 the the DT cord-318057-xagh68jc 130 3 summer summer NN cord-318057-xagh68jc 130 4 2009 2009 CD cord-318057-xagh68jc 130 5 outbreak outbreak NN cord-318057-xagh68jc 130 6 of of IN cord-318057-xagh68jc 130 7 " " `` cord-318057-xagh68jc 130 8 swine swine NN cord-318057-xagh68jc 130 9 flu flu NN cord-318057-xagh68jc 131 1 The the DT cord-318057-xagh68jc 131 2 authors author NNS cord-318057-xagh68jc 131 3 would would MD cord-318057-xagh68jc 131 4 like like VB cord-318057-xagh68jc 131 5 to to TO cord-318057-xagh68jc 131 6 acknowledge acknowledge VB cord-318057-xagh68jc 131 7 the the DT cord-318057-xagh68jc 131 8 following follow VBG cord-318057-xagh68jc 131 9 individuals individual NNS cord-318057-xagh68jc 131 10 . . . cord-318057-xagh68jc 132 1 Dr Dr NNP cord-318057-xagh68jc 132 2 Tony Tony NNP cord-318057-xagh68jc 132 3 Speekenbrink Speekenbrink NNP cord-318057-xagh68jc 132 4 for for IN cord-318057-xagh68jc 132 5 advice advice NN cord-318057-xagh68jc 132 6 on on IN cord-318057-xagh68jc 132 7 statistics statistic NNS cord-318057-xagh68jc 132 8 . . . cord-318057-xagh68jc 133 1 Rhona Rhona NNP cord-318057-xagh68jc 133 2 Miller Miller NNP cord-318057-xagh68jc 133 3 , , , cord-318057-xagh68jc 133 4 Walt Walt NNP cord-318057-xagh68jc 133 5 Adamson Adamson NNP cord-318057-xagh68jc 133 6 , , , cord-318057-xagh68jc 133 7 Alasdair Alasdair NNP cord-318057-xagh68jc 133 8 Maclean Maclean NNP cord-318057-xagh68jc 133 9 and and CC cord-318057-xagh68jc 133 10 Susan Susan NNP cord-318057-xagh68jc 133 11 Bennett Bennett NNP cord-318057-xagh68jc 133 12 for for IN cord-318057-xagh68jc 133 13 advice advice NN cord-318057-xagh68jc 133 14 and and CC cord-318057-xagh68jc 133 15 comments comment NNS cord-318057-xagh68jc 133 16 relating relate VBG cord-318057-xagh68jc 133 17 to to IN cord-318057-xagh68jc 133 18 the the DT cord-318057-xagh68jc 133 19 paper paper NN cord-318057-xagh68jc 133 20 . . . cord-318057-xagh68jc 134 1 Finally finally RB cord-318057-xagh68jc 134 2 the the DT cord-318057-xagh68jc 134 3 authors author NNS cord-318057-xagh68jc 134 4 would would MD cord-318057-xagh68jc 134 5 like like VB cord-318057-xagh68jc 134 6 to to TO cord-318057-xagh68jc 134 7 thank thank VB cord-318057-xagh68jc 134 8 the the DT cord-318057-xagh68jc 134 9 Scottish scottish JJ cord-318057-xagh68jc 134 10 poet poet NN cord-318057-xagh68jc 134 11 and and CC cord-318057-xagh68jc 134 12 English english JJ cord-318057-xagh68jc 134 13 teacher teacher NN cord-318057-xagh68jc 134 14 Donald Donald NNP cord-318057-xagh68jc 134 15 Adamson Adamson NNP cord-318057-xagh68jc 134 16 for for IN cord-318057-xagh68jc 134 17 proofreading proofread VBG cord-318057-xagh68jc 134 18 the the DT cord-318057-xagh68jc 134 19 various various JJ cord-318057-xagh68jc 134 20 versions version NNS cord-318057-xagh68jc 134 21 of of IN cord-318057-xagh68jc 134 22 this this DT cord-318057-xagh68jc 134 23 paper paper NN cord-318057-xagh68jc 134 24 . . . cord-318057-xagh68jc 135 1 The the DT cord-318057-xagh68jc 135 2 Corresponding Corresponding NNP cord-318057-xagh68jc 135 3 Author author NN cord-318057-xagh68jc 135 4 has have VBZ cord-318057-xagh68jc 135 5 the the DT cord-318057-xagh68jc 135 6 right right NN cord-318057-xagh68jc 135 7 to to TO cord-318057-xagh68jc 135 8 grant grant VB cord-318057-xagh68jc 135 9 on on IN cord-318057-xagh68jc 135 10 behalf behalf NN cord-318057-xagh68jc 135 11 of of IN cord-318057-xagh68jc 135 12 all all DT cord-318057-xagh68jc 135 13 authors author NNS cord-318057-xagh68jc 135 14 and and CC cord-318057-xagh68jc 135 15 does do VBZ cord-318057-xagh68jc 135 16 grant grant VB cord-318057-xagh68jc 135 17 on on IN cord-318057-xagh68jc 135 18 behalf behalf NN cord-318057-xagh68jc 135 19 of of IN cord-318057-xagh68jc 135 20 all all DT cord-318057-xagh68jc 135 21 authors author NNS cord-318057-xagh68jc 135 22 , , , cord-318057-xagh68jc 135 23 an an DT cord-318057-xagh68jc 135 24 exclusive exclusive JJ cord-318057-xagh68jc 135 25 licence licence NN cord-318057-xagh68jc 135 26 ( ( -LRB- cord-318057-xagh68jc 135 27 or or CC cord-318057-xagh68jc 135 28 non non JJ cord-318057-xagh68jc 135 29 exclusive exclusive JJ cord-318057-xagh68jc 135 30 for for IN cord-318057-xagh68jc 135 31 government government NN cord-318057-xagh68jc 135 32 employees employee NNS cord-318057-xagh68jc 135 33 ) ) -RRB- cord-318057-xagh68jc 135 34 . . . cord-318057-xagh68jc 136 1 Authors author NNS cord-318057-xagh68jc 136 2 ' ' POS cord-318057-xagh68jc 136 3 contributions contribution NNS cord-318057-xagh68jc 136 4 WFC WFC NNP cord-318057-xagh68jc 136 5 conceived conceive VBD cord-318057-xagh68jc 136 6 of of IN cord-318057-xagh68jc 136 7 the the DT cord-318057-xagh68jc 136 8 study study NN cord-318057-xagh68jc 136 9 . . . cord-318057-xagh68jc 137 1 RG RG NNP cord-318057-xagh68jc 137 2 examined examine VBD cord-318057-xagh68jc 137 3 the the DT cord-318057-xagh68jc 137 4 data datum NNS cord-318057-xagh68jc 137 5 and and CC cord-318057-xagh68jc 137 6 wrote write VBD cord-318057-xagh68jc 137 7 the the DT cord-318057-xagh68jc 137 8 manuscript manuscript NN cord-318057-xagh68jc 137 9 . . . cord-318057-xagh68jc 138 1 All all DT cord-318057-xagh68jc 138 2 authors author NNS cord-318057-xagh68jc 138 3 read read VBP cord-318057-xagh68jc 138 4 and and CC cord-318057-xagh68jc 138 5 approved approve VBD cord-318057-xagh68jc 138 6 the the DT cord-318057-xagh68jc 138 7 final final JJ cord-318057-xagh68jc 138 8 manuscript manuscript NN cord-318057-xagh68jc 138 9 . . . cord-318057-xagh68jc 139 1 The the DT cord-318057-xagh68jc 139 2 authors author NNS cord-318057-xagh68jc 139 3 declare declare VBP cord-318057-xagh68jc 139 4 that that IN cord-318057-xagh68jc 139 5 they -PRON- PRP cord-318057-xagh68jc 139 6 have have VBP cord-318057-xagh68jc 139 7 no no DT cord-318057-xagh68jc 139 8 competing compete VBG cord-318057-xagh68jc 139 9 interests interest NNS cord-318057-xagh68jc 139 10 . . . cord-318057-xagh68jc 139 11 _SP