id	sid	tid	token	lemma	pos
cord-320417-01l27d99	1	1	key	key	JJ
cord-320417-01l27d99	1	2	:	:	:
cord-320417-01l27d99	1	3	cord-320417	cord-320417	NNP
cord-320417-01l27d99	1	4	-	-	HYPH
cord-320417-01l27d99	1	5	01l27d99	01l27d99	CD
cord-320417-01l27d99	1	6	authors	author	NNS
cord-320417-01l27d99	1	7	:	:	:
cord-320417-01l27d99	1	8	Wang	Wang	NNP
cord-320417-01l27d99	1	9	,	,	,
cord-320417-01l27d99	1	10	Hai	Hai	NNP
cord-320417-01l27d99	1	11	-	-	HYPH
cord-320417-01l27d99	1	12	Long	Long	NNP
cord-320417-01l27d99	1	13	title	title	NN
cord-320417-01l27d99	1	14	:	:	:
cord-320417-01l27d99	1	15	The	the	DT
cord-320417-01l27d99	1	16	emergence	emergence	NN
cord-320417-01l27d99	1	17	of	of	IN
cord-320417-01l27d99	1	18	inter	inter	JJ
cord-320417-01l27d99	1	19	-	-	JJ
cord-320417-01l27d99	1	20	clade	clade	JJ
cord-320417-01l27d99	1	21	hybrid	hybrid	JJ
cord-320417-01l27d99	1	22	SARS	SARS	NNP
cord-320417-01l27d99	1	23	-	-	HYPH
cord-320417-01l27d99	1	24	CoV-2	CoV-2	NNP
cord-320417-01l27d99	1	25	lineages	lineage	NNS
cord-320417-01l27d99	1	26	revealed	reveal	VBN
cord-320417-01l27d99	1	27	by	by	IN
cord-320417-01l27d99	1	28	2D	2D	NNP
cord-320417-01l27d99	1	29	nucleotide	nucleotide	JJ
cord-320417-01l27d99	1	30	variation	variation	NN
cord-320417-01l27d99	1	31	mapping	mapping	NN
cord-320417-01l27d99	1	32	date	date	NN
cord-320417-01l27d99	1	33	:	:	:
cord-320417-01l27d99	1	34	2020	2020	CD
cord-320417-01l27d99	1	35	-	-	SYM
cord-320417-01l27d99	1	36	10	10	CD
cord-320417-01l27d99	1	37	-	-	SYM
cord-320417-01l27d99	1	38	14	14	CD
cord-320417-01l27d99	1	39	journal	journal	NN
cord-320417-01l27d99	1	40	:	:	:
cord-320417-01l27d99	2	1	bioRxiv	biorxiv	IN
cord-320417-01l27d99	2	2	DOI	DOI	NNP
cord-320417-01l27d99	2	3	:	:	:
cord-320417-01l27d99	3	1	10.1101/2020.10.13.338038	10.1101/2020.10.13.338038	DT
cord-320417-01l27d99	3	2	sha	sha	NNP
cord-320417-01l27d99	3	3	:	:	:
cord-320417-01l27d99	3	4	f4f4f766001b025838ab8d304228d717cb4bde91	f4f4f766001b025838ab8d304228d717cb4bde91	NNP
cord-320417-01l27d99	3	5	doc_id	doc_id	NNPS
cord-320417-01l27d99	3	6	:	:	:
cord-320417-01l27d99	3	7	320417	320417	CD
cord-320417-01l27d99	3	8	cord_uid	cord_uid	NNS
cord-320417-01l27d99	3	9	:	:	:
cord-320417-01l27d99	4	1	01l27d99	01l27d99	CD
cord-320417-01l27d99	5	1	I	-PRON-	PRP
cord-320417-01l27d99	5	2	performed	perform	VBD
cord-320417-01l27d99	5	3	whole	whole	JJ
cord-320417-01l27d99	5	4	-	-	HYPH
cord-320417-01l27d99	5	5	genome	genome	NN
cord-320417-01l27d99	5	6	sequencing	sequencing	NN
cord-320417-01l27d99	5	7	on	on	IN
cord-320417-01l27d99	5	8	SARS	SARS	NNP
cord-320417-01l27d99	5	9	-	-	HYPH
cord-320417-01l27d99	5	10	CoV-2	CoV-2	NNP
cord-320417-01l27d99	5	11	collected	collect	VBD
cord-320417-01l27d99	5	12	from	from	IN
cord-320417-01l27d99	5	13	COVID-19	covid-19	JJ
cord-320417-01l27d99	5	14	samples	sample	NNS
cord-320417-01l27d99	5	15	at	at	IN
cord-320417-01l27d99	5	16	Mayo	Mayo	NNP
cord-320417-01l27d99	5	17	Clinic	Clinic	NNP
cord-320417-01l27d99	5	18	Rochester	Rochester	NNP
cord-320417-01l27d99	5	19	in	in	IN
cord-320417-01l27d99	5	20	mid	mid	NNP
cord-320417-01l27d99	5	21	-	-	NNP
cord-320417-01l27d99	5	22	April	April	NNP
cord-320417-01l27d99	5	23	,	,	,
cord-320417-01l27d99	5	24	2020	2020	CD
cord-320417-01l27d99	5	25	,	,	,
cord-320417-01l27d99	5	26	generated	generate	VBN
cord-320417-01l27d99	5	27	85	85	CD
cord-320417-01l27d99	5	28	consensus	consensus	NN
cord-320417-01l27d99	5	29	genome	genome	NN
cord-320417-01l27d99	5	30	sequences	sequence	NNS
cord-320417-01l27d99	5	31	and	and	CC
cord-320417-01l27d99	5	32	compared	compare	VBD
cord-320417-01l27d99	5	33	them	-PRON-	PRP
cord-320417-01l27d99	5	34	to	to	IN
cord-320417-01l27d99	5	35	other	other	JJ
cord-320417-01l27d99	5	36	genome	genome	NN
cord-320417-01l27d99	5	37	sequences	sequence	NNS
cord-320417-01l27d99	5	38	collected	collect	VBN
cord-320417-01l27d99	5	39	worldwide	worldwide	RB
cord-320417-01l27d99	5	40	.	.	.
cord-320417-01l27d99	6	1	I	-PRON-	PRP
cord-320417-01l27d99	6	2	proposed	propose	VBD
cord-320417-01l27d99	6	3	a	a	DT
cord-320417-01l27d99	6	4	novel	novel	JJ
cord-320417-01l27d99	6	5	illustrating	illustrating	NN
cord-320417-01l27d99	6	6	method	method	NN
cord-320417-01l27d99	6	7	using	use	VBG
cord-320417-01l27d99	6	8	a	a	DT
cord-320417-01l27d99	6	9	2D	2d	JJ
cord-320417-01l27d99	6	10	map	map	NN
cord-320417-01l27d99	6	11	to	to	TO
cord-320417-01l27d99	6	12	display	display	VB
cord-320417-01l27d99	6	13	populations	population	NNS
cord-320417-01l27d99	6	14	of	of	IN
cord-320417-01l27d99	6	15	co	co	NN
cord-320417-01l27d99	6	16	-	-	JJ
cord-320417-01l27d99	6	17	occurring	occurring	JJ
cord-320417-01l27d99	6	18	nucleotide	nucleotide	JJ
cord-320417-01l27d99	6	19	variants	variant	NNS
cord-320417-01l27d99	6	20	for	for	IN
cord-320417-01l27d99	6	21	intra-	intra-	NN
cord-320417-01l27d99	7	1	and	and	CC
cord-320417-01l27d99	7	2	inter	inter	JJ
cord-320417-01l27d99	7	3	-	-	JJ
cord-320417-01l27d99	7	4	viral	viral	JJ
cord-320417-01l27d99	7	5	clades	clade	NNS
cord-320417-01l27d99	7	6	.	.	.
cord-320417-01l27d99	8	1	This	this	DT
cord-320417-01l27d99	8	2	method	method	NN
cord-320417-01l27d99	8	3	is	be	VBZ
cord-320417-01l27d99	8	4	highly	highly	RB
cord-320417-01l27d99	8	5	advantageous	advantageous	JJ
cord-320417-01l27d99	8	6	for	for	IN
cord-320417-01l27d99	8	7	the	the	DT
cord-320417-01l27d99	8	8	new	new	JJ
cord-320417-01l27d99	8	9	era	era	NN
cord-320417-01l27d99	8	10	of	of	IN
cord-320417-01l27d99	8	11	“	"	``
cord-320417-01l27d99	8	12	big	big	JJ
cord-320417-01l27d99	8	13	-	-	HYPH
cord-320417-01l27d99	8	14	data	datum	NNS
cord-320417-01l27d99	8	15	”	"	''
cord-320417-01l27d99	8	16	when	when	WRB
cord-320417-01l27d99	8	17	high	high	JJ
cord-320417-01l27d99	8	18	-	-	HYPH
cord-320417-01l27d99	8	19	throughput	throughput	NN
cord-320417-01l27d99	8	20	sequencing	sequencing	NN
cord-320417-01l27d99	8	21	is	be	VBZ
cord-320417-01l27d99	8	22	becoming	become	VBG
cord-320417-01l27d99	8	23	readily	readily	RB
cord-320417-01l27d99	8	24	available	available	JJ
cord-320417-01l27d99	8	25	.	.	.
cord-320417-01l27d99	9	1	Using	use	VBG
cord-320417-01l27d99	9	2	this	this	DT
cord-320417-01l27d99	9	3	method	method	NN
cord-320417-01l27d99	9	4	,	,	,
cord-320417-01l27d99	9	5	I	-PRON-	PRP
cord-320417-01l27d99	9	6	revealed	reveal	VBD
cord-320417-01l27d99	9	7	the	the	DT
cord-320417-01l27d99	9	8	emergence	emergence	NN
cord-320417-01l27d99	9	9	of	of	IN
cord-320417-01l27d99	9	10	inter	inter	JJ
cord-320417-01l27d99	9	11	-	-	JJ
cord-320417-01l27d99	9	12	clade	clade	JJ
cord-320417-01l27d99	9	13	hybrid	hybrid	JJ
cord-320417-01l27d99	9	14	SARS	SARS	NNP
cord-320417-01l27d99	9	15	-	-	HYPH
cord-320417-01l27d99	9	16	CoV-2	CoV-2	NNP
cord-320417-01l27d99	9	17	lineages	lineage	NNS
cord-320417-01l27d99	9	18	that	that	WDT
cord-320417-01l27d99	9	19	are	be	VBP
cord-320417-01l27d99	9	20	potentially	potentially	RB
cord-320417-01l27d99	9	21	caused	cause	VBN
cord-320417-01l27d99	9	22	by	by	IN
cord-320417-01l27d99	9	23	homologous	homologous	JJ
cord-320417-01l27d99	9	24	genetic	genetic	JJ
cord-320417-01l27d99	9	25	recombination	recombination	NN
cord-320417-01l27d99	9	26	.	.	.
cord-320417-01l27d99	10	1	The	the	DT
cord-320417-01l27d99	10	2	COVID-19	covid-19	CD
cord-320417-01l27d99	10	3	pandemic	pandemic	NN
cord-320417-01l27d99	10	4	caused	cause	VBD
cord-320417-01l27d99	10	5	unprecedented	unprecedented	JJ
cord-320417-01l27d99	10	6	disruption	disruption	NN
cord-320417-01l27d99	10	7	to	to	IN
cord-320417-01l27d99	10	8	populations	population	NNS
cord-320417-01l27d99	10	9	worldwide	worldwide	RB
cord-320417-01l27d99	10	10	.	.	.
cord-320417-01l27d99	11	1	The	the	DT
cord-320417-01l27d99	11	2	causative	causative	JJ
cord-320417-01l27d99	11	3	agent	agent	NN
cord-320417-01l27d99	11	4	is	be	VBZ
cord-320417-01l27d99	11	5	the	the	DT
cord-320417-01l27d99	11	6	SARS	SARS	NNP
cord-320417-01l27d99	11	7	-	-	HYPH
cord-320417-01l27d99	11	8	CoV-2	CoV-2	NNP
cord-320417-01l27d99	11	9	virus	virus	NN
cord-320417-01l27d99	11	10	,	,	,
cord-320417-01l27d99	11	11	a	a	DT
cord-320417-01l27d99	11	12	single	single	RB
cord-320417-01l27d99	11	13	-	-	HYPH
cord-320417-01l27d99	11	14	stranded	strand	VBN
cord-320417-01l27d99	11	15	positive	positive	JJ
cord-320417-01l27d99	11	16	-	-	HYPH
cord-320417-01l27d99	11	17	sense	sense	NN
cord-320417-01l27d99	11	18	RNA	RNA	NNP
cord-320417-01l27d99	11	19	virus	virus	NN
cord-320417-01l27d99	11	20	from	from	IN
cord-320417-01l27d99	11	21	the	the	DT
cord-320417-01l27d99	11	22	beta	beta	NN
cord-320417-01l27d99	11	23	-	-	HYPH
cord-320417-01l27d99	11	24	coronavirus	coronavirus	NN
cord-320417-01l27d99	11	25	genus	genus	NN
cord-320417-01l27d99	11	26	with	with	IN
cord-320417-01l27d99	11	27	~30	~30	CD
cord-320417-01l27d99	11	28	kb	kb	NNP
cord-320417-01l27d99	11	29	in	in	IN
cord-320417-01l27d99	11	30	genome	genome	NN
cord-320417-01l27d99	11	31	length	length	NN
cord-320417-01l27d99	11	32	1	1	CD
cord-320417-01l27d99	11	33	,	,	,
cord-320417-01l27d99	11	34	2	2	CD
cord-320417-01l27d99	11	35	.	.	.
cord-320417-01l27d99	12	1	Although	although	IN
cord-320417-01l27d99	12	2	general	general	JJ
cord-320417-01l27d99	12	3	testing	testing	NN
cord-320417-01l27d99	12	4	for	for	IN
cord-320417-01l27d99	12	5	this	this	DT
cord-320417-01l27d99	12	6	novel	novel	JJ
cord-320417-01l27d99	12	7	virus	virus	NN
cord-320417-01l27d99	12	8	is	be	VBZ
cord-320417-01l27d99	12	9	rapidly	rapidly	RB
cord-320417-01l27d99	12	10	expanding	expand	VBG
cord-320417-01l27d99	12	11	,	,	,
cord-320417-01l27d99	12	12	targeted	target	VBN
cord-320417-01l27d99	12	13	sequencing	sequencing	NN
cord-320417-01l27d99	12	14	approaches	approach	NNS
cord-320417-01l27d99	12	15	have	have	VBP
cord-320417-01l27d99	12	16	attracted	attract	VBN
cord-320417-01l27d99	12	17	more	more	JJR
cord-320417-01l27d99	12	18	attention	attention	NN
cord-320417-01l27d99	12	19	for	for	IN
cord-320417-01l27d99	12	20	the	the	DT
cord-320417-01l27d99	12	21	following	follow	VBG
cord-320417-01l27d99	12	22	reasons	reason	NNS
cord-320417-01l27d99	12	23	:	:	:
cord-320417-01l27d99	12	24	a	a	LS
cord-320417-01l27d99	12	25	)	)	-RRB-
cord-320417-01l27d99	13	1	The	the	DT
cord-320417-01l27d99	13	2	SARs	SARs	NNP
cord-320417-01l27d99	13	3	-	-	:
cord-320417-01l27d99	13	4	CoV-2	CoV-2	NNP
cord-320417-01l27d99	13	5	virus	virus	NN
cord-320417-01l27d99	13	6	has	have	VBZ
cord-320417-01l27d99	13	7	evolved	evolve	VBN
cord-320417-01l27d99	13	8	into	into	IN
cord-320417-01l27d99	13	9	mutant	mutant	JJ
cord-320417-01l27d99	13	10	strains	strain	NNS
cord-320417-01l27d99	13	11	with	with	IN
cord-320417-01l27d99	13	12	different	different	JJ
cord-320417-01l27d99	13	13	clinical	clinical	JJ
cord-320417-01l27d99	13	14	complications	complication	NNS
cord-320417-01l27d99	13	15	.	.	.
cord-320417-01l27d99	14	1	Monitoring	monitor	VBG
cord-320417-01l27d99	14	2	the	the	DT
cord-320417-01l27d99	14	3	spread	spread	NN
cord-320417-01l27d99	14	4	of	of	IN
cord-320417-01l27d99	14	5	specific	specific	JJ
cord-320417-01l27d99	14	6	strains	strain	NNS
cord-320417-01l27d99	14	7	during	during	IN
cord-320417-01l27d99	14	8	an	an	DT
cord-320417-01l27d99	14	9	outbreak	outbreak	NN
cord-320417-01l27d99	14	10	can	can	MD
cord-320417-01l27d99	14	11	help	help	VB
cord-320417-01l27d99	14	12	inform	inform	VB
cord-320417-01l27d99	14	13	intervention	intervention	NN
cord-320417-01l27d99	14	14	methods	method	NNS
cord-320417-01l27d99	14	15	and	and	CC
cord-320417-01l27d99	14	16	their	-PRON-	PRP$
cord-320417-01l27d99	14	17	impacts	impact	NNS
cord-320417-01l27d99	14	18	.	.	.
cord-320417-01l27d99	15	1	b	b	LS
cord-320417-01l27d99	15	2	)	)	-RRB-
cord-320417-01l27d99	16	1	Vaccine	vaccine	NN
cord-320417-01l27d99	16	2	efficacy	efficacy	NN
cord-320417-01l27d99	16	3	can	can	MD
cord-320417-01l27d99	16	4	be	be	VB
cord-320417-01l27d99	16	5	monitored	monitor	VBN
cord-320417-01l27d99	16	6	by	by	IN
cord-320417-01l27d99	16	7	tracking	track	VBG
cord-320417-01l27d99	16	8	the	the	DT
cord-320417-01l27d99	16	9	prevalence	prevalence	NN
cord-320417-01l27d99	16	10	and	and	CC
cord-320417-01l27d99	16	11	distribution	distribution	NN
cord-320417-01l27d99	16	12	of	of	IN
cord-320417-01l27d99	16	13	key	key	JJ
cord-320417-01l27d99	16	14	genes	gene	NNS
cord-320417-01l27d99	16	15	involved	involve	VBN
cord-320417-01l27d99	16	16	in	in	IN
cord-320417-01l27d99	16	17	vaccine	vaccine	NN
cord-320417-01l27d99	16	18	development	development	NN
cord-320417-01l27d99	16	19	and	and	CC
cord-320417-01l27d99	16	20	deployment	deployment	NN
cord-320417-01l27d99	16	21	,	,	,
cord-320417-01l27d99	16	22	and	and	CC
cord-320417-01l27d99	16	23	by	by	IN
cord-320417-01l27d99	16	24	determining	determine	VBG
cord-320417-01l27d99	16	25	the	the	DT
cord-320417-01l27d99	16	26	viral	viral	JJ
cord-320417-01l27d99	16	27	mutation	mutation	NN
cord-320417-01l27d99	16	28	rates	rate	NNS
cord-320417-01l27d99	16	29	to	to	TO
cord-320417-01l27d99	16	30	inform	inform	VB
cord-320417-01l27d99	16	31	a	a	DT
cord-320417-01l27d99	16	32	vaccine	vaccine	NN
cord-320417-01l27d99	16	33	's	's	POS
cord-320417-01l27d99	16	34	longevity	longevity	NN
cord-320417-01l27d99	16	35	and	and	CC
cord-320417-01l27d99	16	36	its	-PRON-	PRP$
cord-320417-01l27d99	16	37	interactions	interaction	NNS
cord-320417-01l27d99	16	38	with	with	IN
cord-320417-01l27d99	16	39	the	the	DT
cord-320417-01l27d99	16	40	human	human	JJ
cord-320417-01l27d99	16	41	immune	immune	NN
cord-320417-01l27d99	16	42	system	system	NN
cord-320417-01l27d99	16	43	[	[	-LRB-
cord-320417-01l27d99	16	44	3	3	CD
cord-320417-01l27d99	16	45	]	]	-RRB-
cord-320417-01l27d99	16	46	[	[	-LRB-
cord-320417-01l27d99	16	47	4	4	CD
cord-320417-01l27d99	16	48	]	]	-RRB-
cord-320417-01l27d99	16	49	[	[	-LRB-
cord-320417-01l27d99	16	50	5	5	CD
cord-320417-01l27d99	16	51	]	]	-RRB-
cord-320417-01l27d99	16	52	.	.	.
cord-320417-01l27d99	17	1	Today	today	NN
cord-320417-01l27d99	17	2	,	,	,
cord-320417-01l27d99	17	3	there	there	EX
cord-320417-01l27d99	17	4	are	be	VBP
cord-320417-01l27d99	17	5	over	over	IN
cord-320417-01l27d99	17	6	100,000	100,000	CD
cord-320417-01l27d99	17	7	genome	genome	NN
cord-320417-01l27d99	17	8	deposits	deposit	NNS
cord-320417-01l27d99	17	9	on	on	IN
cord-320417-01l27d99	17	10	GISAID	GISAID	NNP
cord-320417-01l27d99	17	11	(	(	-LRB-
cord-320417-01l27d99	17	12	the	the	DT
cord-320417-01l27d99	17	13	Global	Global	NNP
cord-320417-01l27d99	17	14	Initiative	Initiative	NNP
cord-320417-01l27d99	17	15	on	on	IN
cord-320417-01l27d99	17	16	Sharing	Sharing	NNP
cord-320417-01l27d99	17	17	All	all	DT
cord-320417-01l27d99	17	18	Influenza	Influenza	NNP
cord-320417-01l27d99	17	19	Data	Data	NNP
cord-320417-01l27d99	17	20	)	)	-RRB-
cord-320417-01l27d99	17	21	and	and	CC
cord-320417-01l27d99	17	22	over	over	IN
cord-320417-01l27d99	17	23	30,000	30,000	CD
cord-320417-01l27d99	17	24	on	on	IN
cord-320417-01l27d99	17	25	NCBI	NCBI	NNP
cord-320417-01l27d99	17	26	(	(	-LRB-
cord-320417-01l27d99	17	27	National	National	NNP
cord-320417-01l27d99	17	28	Center	Center	NNP
cord-320417-01l27d99	17	29	for	for	IN
cord-320417-01l27d99	17	30	Biotechnology	Biotechnology	NNP
cord-320417-01l27d99	17	31	Information	Information	NNP
cord-320417-01l27d99	17	32	)	)	-RRB-
cord-320417-01l27d99	17	33	,	,	,
cord-320417-01l27d99	17	34	reflecting	reflect	VBG
cord-320417-01l27d99	17	35	a	a	DT
cord-320417-01l27d99	17	36	worldwide	worldwide	JJ
cord-320417-01l27d99	17	37	effort	effort	NN
cord-320417-01l27d99	17	38	to	to	TO
cord-320417-01l27d99	17	39	fight	fight	VB
cord-320417-01l27d99	17	40	against	against	IN
cord-320417-01l27d99	17	41	the	the	DT
cord-320417-01l27d99	17	42	virulent	virulent	JJ
cord-320417-01l27d99	17	43	pathogen	pathogen	NN
cord-320417-01l27d99	17	44	.	.	.
cord-320417-01l27d99	18	1	The	the	DT
cord-320417-01l27d99	18	2	wealth	wealth	NN
cord-320417-01l27d99	18	3	of	of	IN
cord-320417-01l27d99	18	4	SARS	SARS	NNP
cord-320417-01l27d99	18	5	-	-	HYPH
cord-320417-01l27d99	18	6	CoV-2	CoV-2	NNP
cord-320417-01l27d99	18	7	genome	genome	NN
cord-320417-01l27d99	18	8	sequences	sequence	NNS
cord-320417-01l27d99	18	9	provides	provide	VBZ
cord-320417-01l27d99	18	10	a	a	DT
cord-320417-01l27d99	18	11	rare	rare	JJ
cord-320417-01l27d99	18	12	opportunity	opportunity	NN
cord-320417-01l27d99	18	13	for	for	IN
cord-320417-01l27d99	18	14	both	both	CC
cord-320417-01l27d99	18	15	clinical	clinical	JJ
cord-320417-01l27d99	18	16	and	and	CC
cord-320417-01l27d99	18	17	basic	basic	JJ
cord-320417-01l27d99	18	18	scientists	scientist	NNS
cord-320417-01l27d99	18	19	to	to	TO
cord-320417-01l27d99	18	20	investigate	investigate	VB
cord-320417-01l27d99	18	21	its	-PRON-	PRP$
cord-320417-01l27d99	18	22	evolution	evolution	NN
cord-320417-01l27d99	18	23	mechanism	mechanism	NN
cord-320417-01l27d99	18	24	.	.	.
cord-320417-01l27d99	19	1	On	on	IN
cord-320417-01l27d99	19	2	the	the	DT
cord-320417-01l27d99	19	3	other	other	JJ
cord-320417-01l27d99	19	4	hand	hand	NN
cord-320417-01l27d99	19	5	,	,	,
cord-320417-01l27d99	19	6	outsized	outsized	JJ
cord-320417-01l27d99	19	7	collections	collection	NNS
cord-320417-01l27d99	19	8	of	of	IN
cord-320417-01l27d99	19	9	genome	genome	NN
cord-320417-01l27d99	19	10	sequences	sequence	NNS
cord-320417-01l27d99	19	11	pose	pose	VBP
cord-320417-01l27d99	19	12	a	a	DT
cord-320417-01l27d99	19	13	computational	computational	JJ
cord-320417-01l27d99	19	14	challenge	challenge	NN
cord-320417-01l27d99	19	15	to	to	IN
cord-320417-01l27d99	19	16	bioinformatics	bioinformatics	NN
cord-320417-01l27d99	19	17	analysis	analysis	NN
cord-320417-01l27d99	19	18	.	.	.
cord-320417-01l27d99	20	1	Currently	currently	RB
cord-320417-01l27d99	20	2	,	,	,
cord-320417-01l27d99	20	3	the	the	DT
cord-320417-01l27d99	20	4	most	most	RBS
cord-320417-01l27d99	20	5	adopted	adopt	VBN
cord-320417-01l27d99	20	6	method	method	NN
cord-320417-01l27d99	20	7	for	for	IN
cord-320417-01l27d99	20	8	illustrating	illustrate	VBG
cord-320417-01l27d99	20	9	species	specie	NNS
cord-320417-01l27d99	20	10	evolution	evolution	NN
cord-320417-01l27d99	20	11	,	,	,
cord-320417-01l27d99	20	12	the	the	DT
cord-320417-01l27d99	20	13	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	20	14	analysis	analysis	NN
cord-320417-01l27d99	20	15	,	,	,
cord-320417-01l27d99	20	16	is	be	VBZ
cord-320417-01l27d99	20	17	inadequate	inadequate	JJ
cord-320417-01l27d99	20	18	for	for	IN
cord-320417-01l27d99	20	19	discerning	discern	VBG
cord-320417-01l27d99	20	20	fast	fast	RB
cord-320417-01l27d99	20	21	-	-	HYPH
cord-320417-01l27d99	20	22	evolving	evolve	VBG
cord-320417-01l27d99	20	23	mutations	mutation	NNS
cord-320417-01l27d99	20	24	and	and	CC
cord-320417-01l27d99	20	25	recombination	recombination	NN
cord-320417-01l27d99	20	26	.	.	.
cord-320417-01l27d99	21	1	New	new	JJ
cord-320417-01l27d99	21	2	methods	method	NNS
cord-320417-01l27d99	21	3	for	for	IN
cord-320417-01l27d99	21	4	mapping	mapping	NN
cord-320417-01l27d99	21	5	mutations	mutation	NNS
cord-320417-01l27d99	21	6	within	within	IN
cord-320417-01l27d99	21	7	the	the	DT
cord-320417-01l27d99	21	8	same	same	JJ
cord-320417-01l27d99	21	9	genome	genome	NN
cord-320417-01l27d99	21	10	are	be	VBP
cord-320417-01l27d99	21	11	needed	need	VBN
cord-320417-01l27d99	21	12	for	for	IN
cord-320417-01l27d99	21	13	the	the	DT
cord-320417-01l27d99	21	14	impending	impending	JJ
cord-320417-01l27d99	21	15	"	"	``
cord-320417-01l27d99	21	16	big	big	JJ
cord-320417-01l27d99	21	17	-	-	HYPH
cord-320417-01l27d99	21	18	data	datum	NNS
cord-320417-01l27d99	21	19	"	"	''
cord-320417-01l27d99	21	20	era	era	NN
cord-320417-01l27d99	21	21	.	.	.
cord-320417-01l27d99	22	1	I	-PRON-	PRP
cord-320417-01l27d99	22	2	propose	propose	VBP
cord-320417-01l27d99	22	3	a	a	DT
cord-320417-01l27d99	22	4	two	two	CD
cord-320417-01l27d99	22	5	-	-	HYPH
cord-320417-01l27d99	22	6	dimensional	dimensional	JJ
cord-320417-01l27d99	22	7	nucleotide	nucleotide	JJ
cord-320417-01l27d99	22	8	variant	variant	NN
cord-320417-01l27d99	22	9	mapping	mapping	NN
cord-320417-01l27d99	22	10	that	that	WDT
cord-320417-01l27d99	22	11	illustrates	illustrate	VBZ
cord-320417-01l27d99	22	12	populations	population	NNS
cord-320417-01l27d99	22	13	of	of	IN
cord-320417-01l27d99	22	14	cooccurring	cooccurring	NN
cord-320417-01l27d99	22	15	mutations	mutation	NNS
cord-320417-01l27d99	22	16	within	within	IN
cord-320417-01l27d99	22	17	the	the	DT
cord-320417-01l27d99	22	18	same	same	JJ
cord-320417-01l27d99	22	19	genome	genome	NN
cord-320417-01l27d99	22	20	.	.	.
cord-320417-01l27d99	23	1	This	this	DT
cord-320417-01l27d99	23	2	plotting	plotting	NN
cord-320417-01l27d99	23	3	method	method	NN
cord-320417-01l27d99	23	4	is	be	VBZ
cord-320417-01l27d99	23	5	not	not	RB
cord-320417-01l27d99	23	6	limited	limit	VBN
cord-320417-01l27d99	23	7	by	by	IN
cord-320417-01l27d99	23	8	the	the	DT
cord-320417-01l27d99	23	9	increasing	increase	VBG
cord-320417-01l27d99	23	10	number	number	NN
cord-320417-01l27d99	23	11	of	of	IN
cord-320417-01l27d99	23	12	examined	examine	VBN
cord-320417-01l27d99	23	13	sequences	sequence	NNS
cord-320417-01l27d99	23	14	.	.	.
cord-320417-01l27d99	24	1	Thus	thus	RB
cord-320417-01l27d99	24	2	,	,	,
cord-320417-01l27d99	24	3	it	-PRON-	PRP
cord-320417-01l27d99	24	4	allows	allow	VBZ
cord-320417-01l27d99	24	5	a	a	DT
cord-320417-01l27d99	24	6	direct	direct	JJ
cord-320417-01l27d99	24	7	comparison	comparison	NN
cord-320417-01l27d99	24	8	between	between	IN
cord-320417-01l27d99	24	9	genome	genome	NN
cord-320417-01l27d99	24	10	collections	collection	NNS
cord-320417-01l27d99	24	11	from	from	IN
cord-320417-01l27d99	24	12	different	different	JJ
cord-320417-01l27d99	24	13	geographic	geographic	JJ
cord-320417-01l27d99	24	14	regions	region	NNS
cord-320417-01l27d99	24	15	or	or	CC
cord-320417-01l27d99	24	16	the	the	DT
cord-320417-01l27d99	24	17	same	same	JJ
cord-320417-01l27d99	24	18	region	region	NN
cord-320417-01l27d99	24	19	but	but	CC
cord-320417-01l27d99	24	20	at	at	IN
cord-320417-01l27d99	24	21	a	a	DT
cord-320417-01l27d99	24	22	different	different	JJ
cord-320417-01l27d99	24	23	time	time	NN
cord-320417-01l27d99	24	24	.	.	.
cord-320417-01l27d99	25	1	Furthermore	furthermore	RB
cord-320417-01l27d99	25	2	,	,	,
cord-320417-01l27d99	25	3	it	-PRON-	PRP
cord-320417-01l27d99	25	4	reveals	reveal	VBZ
cord-320417-01l27d99	25	5	the	the	DT
cord-320417-01l27d99	25	6	emergence	emergence	NN
cord-320417-01l27d99	25	7	of	of	IN
cord-320417-01l27d99	25	8	inter	inter	JJ
cord-320417-01l27d99	25	9	-	-	JJ
cord-320417-01l27d99	25	10	clade	clade	JJ
cord-320417-01l27d99	25	11	hybrid	hybrid	JJ
cord-320417-01l27d99	25	12	lineages	lineage	NNS
cord-320417-01l27d99	25	13	.	.	.
cord-320417-01l27d99	26	1	As	as	IN
cord-320417-01l27d99	26	2	part	part	NN
cord-320417-01l27d99	26	3	of	of	IN
cord-320417-01l27d99	26	4	Mayo	Mayo	NNP
cord-320417-01l27d99	26	5	Clinic	Clinic	NNP
cord-320417-01l27d99	26	6	's	's	POS
cord-320417-01l27d99	26	7	efforts	effort	NNS
cord-320417-01l27d99	26	8	to	to	TO
cord-320417-01l27d99	26	9	fight	fight	VB
cord-320417-01l27d99	26	10	against	against	IN
cord-320417-01l27d99	26	11	COVID-19	COVID-19	NNP
cord-320417-01l27d99	26	12	,	,	,
cord-320417-01l27d99	26	13	I	-PRON-	PRP
cord-320417-01l27d99	26	14	performed	perform	VBD
cord-320417-01l27d99	26	15	viral	viral	JJ
cord-320417-01l27d99	26	16	genome	genome	NN
cord-320417-01l27d99	26	17	sequencing	sequencing	NN
cord-320417-01l27d99	26	18	using	use	VBG
cord-320417-01l27d99	26	19	the	the	DT
cord-320417-01l27d99	26	20	third	third	JJ
cord-320417-01l27d99	26	21	-	-	HYPH
cord-320417-01l27d99	26	22	generation	generation	NN
cord-320417-01l27d99	26	23	sequencing	sequencing	NN
cord-320417-01l27d99	26	24	techniques	technique	NNS
cord-320417-01l27d99	26	25	developed	develop	VBN
cord-320417-01l27d99	26	26	by	by	IN
cord-320417-01l27d99	26	27	Oxford	Oxford	NNP
cord-320417-01l27d99	26	28	Nanopore	Nanopore	NNP
cord-320417-01l27d99	26	29	Technology	Technology	NNP
cord-320417-01l27d99	26	30	(	(	-LRB-
cord-320417-01l27d99	26	31	ONT	ONT	NNP
cord-320417-01l27d99	26	32	)	)	-RRB-
cord-320417-01l27d99	26	33	.	.	.
cord-320417-01l27d99	27	1	I	-PRON-	PRP
cord-320417-01l27d99	27	2	received	receive	VBD
cord-320417-01l27d99	27	3	103	103	CD
cord-320417-01l27d99	27	4	positive	positive	JJ
cord-320417-01l27d99	27	5	COVID-19	COVID-19	NNP
cord-320417-01l27d99	27	6	samples	sample	NNS
cord-320417-01l27d99	27	7	of	of	IN
cord-320417-01l27d99	27	8	RNA	RNA	NNP
cord-320417-01l27d99	27	9	extracts	extract	NNS
cord-320417-01l27d99	27	10	collected	collect	VBN
cord-320417-01l27d99	27	11	by	by	IN
cord-320417-01l27d99	27	12	the	the	DT
cord-320417-01l27d99	27	13	Department	Department	NNP
cord-320417-01l27d99	27	14	of	of	IN
cord-320417-01l27d99	27	15	Laboratory	Laboratory	NNP
cord-320417-01l27d99	27	16	Medicine	Medicine	NNP
cord-320417-01l27d99	27	17	&	&	CC
cord-320417-01l27d99	27	18	Pathology	Pathology	NNP
cord-320417-01l27d99	27	19	at	at	IN
cord-320417-01l27d99	27	20	Mayo	Mayo	NNP
cord-320417-01l27d99	27	21	Clinic	Clinic	NNP
cord-320417-01l27d99	27	22	Rochester	Rochester	NNP
cord-320417-01l27d99	27	23	from	from	IN
cord-320417-01l27d99	27	24	April	April	NNP
cord-320417-01l27d99	27	25	20	20	CD
cord-320417-01l27d99	27	26	,	,	,
cord-320417-01l27d99	27	27	2020	2020	CD
cord-320417-01l27d99	27	28	through	through	IN
cord-320417-01l27d99	27	29	April	April	NNP
cord-320417-01l27d99	27	30	29	29	CD
cord-320417-01l27d99	27	31	,	,	,
cord-320417-01l27d99	27	32	2020	2020	CD
cord-320417-01l27d99	27	33	.	.	.
cord-320417-01l27d99	28	1	Following	follow	VBG
cord-320417-01l27d99	28	2	the	the	DT
cord-320417-01l27d99	28	3	ARTIC	ARTIC	NNP
cord-320417-01l27d99	28	4	network	network	NN
cord-320417-01l27d99	28	5	's	's	POS
cord-320417-01l27d99	28	6	amplicon	amplicon	NN
cord-320417-01l27d99	28	7	sequencing	sequencing	NN
cord-320417-01l27d99	28	8	protocol	protocol	NN
cord-320417-01l27d99	28	9	6	6	CD
cord-320417-01l27d99	28	10	(	(	-LRB-
cord-320417-01l27d99	28	11	see	see	VB
cord-320417-01l27d99	28	12	method	method	NN
cord-320417-01l27d99	28	13	for	for	IN
cord-320417-01l27d99	28	14	details	detail	NNS
cord-320417-01l27d99	28	15	)	)	-RRB-
cord-320417-01l27d99	28	16	,	,	,
cord-320417-01l27d99	28	17	I	-PRON-	PRP
cord-320417-01l27d99	28	18	succeeded	succeed	VBD
cord-320417-01l27d99	28	19	in	in	IN
cord-320417-01l27d99	28	20	collecting	collect	VBG
cord-320417-01l27d99	28	21	85	85	CD
cord-320417-01l27d99	28	22	genome	genome	NN
cord-320417-01l27d99	28	23	sequences	sequence	NNS
cord-320417-01l27d99	28	24	.	.	.
cord-320417-01l27d99	29	1	A	a	DT
cord-320417-01l27d99	29	2	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	29	3	tree	tree	NN
cord-320417-01l27d99	29	4	,	,	,
cord-320417-01l27d99	29	5	presented	present	VBN
cord-320417-01l27d99	29	6	in	in	IN
cord-320417-01l27d99	29	7	Figure	Figure	NNP
cord-320417-01l27d99	29	8	1	1	CD
cord-320417-01l27d99	29	9	,	,	,
cord-320417-01l27d99	29	10	compares	compare	VBZ
cord-320417-01l27d99	29	11	these	these	DT
cord-320417-01l27d99	29	12	genome	genome	NN
cord-320417-01l27d99	29	13	sequences	sequence	NNS
cord-320417-01l27d99	29	14	to	to	IN
cord-320417-01l27d99	29	15	a	a	DT
cord-320417-01l27d99	29	16	reference	reference	NN
cord-320417-01l27d99	29	17	genome	genome	NN
cord-320417-01l27d99	29	18	(	(	-LRB-
cord-320417-01l27d99	29	19	NC_045512.2	NC_045512.2	NNP
cord-320417-01l27d99	29	20	)	)	-RRB-
cord-320417-01l27d99	29	21	.	.	.
cord-320417-01l27d99	30	1	According	accord	VBG
cord-320417-01l27d99	30	2	to	to	IN
cord-320417-01l27d99	30	3	the	the	DT
cord-320417-01l27d99	30	4	latest	late	JJS
cord-320417-01l27d99	30	5	SARS	SARS	NNP
cord-320417-01l27d99	30	6	-	-	HYPH
cord-320417-01l27d99	30	7	CoV-2	CoV-2	NNP
cord-320417-01l27d99	30	8	classification	classification	NN
cord-320417-01l27d99	30	9	7	7	CD
cord-320417-01l27d99	30	10	,	,	,
cord-320417-01l27d99	30	11	there	there	EX
cord-320417-01l27d99	30	12	are	be	VBP
cord-320417-01l27d99	30	13	six	six	CD
cord-320417-01l27d99	30	14	major	major	JJ
cord-320417-01l27d99	30	15	viral	viral	JJ
cord-320417-01l27d99	30	16	clades	clade	NNS
cord-320417-01l27d99	30	17	(	(	-LRB-
cord-320417-01l27d99	30	18	named	name	VBN
cord-320417-01l27d99	30	19	L	L	NNP
cord-320417-01l27d99	30	20	,	,	,
cord-320417-01l27d99	30	21	S	S	NNP
cord-320417-01l27d99	30	22	,	,	,
cord-320417-01l27d99	30	23	V	v	NN
cord-320417-01l27d99	30	24	,	,	,
cord-320417-01l27d99	30	25	G	G	NNP
cord-320417-01l27d99	30	26	,	,	,
cord-320417-01l27d99	30	27	GH	GH	NNP
cord-320417-01l27d99	30	28	and	and	CC
cord-320417-01l27d99	30	29	GR	GR	NNP
cord-320417-01l27d99	30	30	,	,	,
cord-320417-01l27d99	30	31	respectively	respectively	RB
cord-320417-01l27d99	30	32	)	)	-RRB-
cord-320417-01l27d99	30	33	represented	represent	VBN
cord-320417-01l27d99	30	34	by	by	IN
cord-320417-01l27d99	30	35	their	-PRON-	PRP$
cord-320417-01l27d99	30	36	unique	unique	JJ
cord-320417-01l27d99	30	37	sets	set	NNS
cord-320417-01l27d99	30	38	of	of	IN
cord-320417-01l27d99	30	39	single	single	JJ
cord-320417-01l27d99	30	40	nucleotide	nucleotide	JJ
cord-320417-01l27d99	30	41	polymorphisms	polymorphism	NNS
cord-320417-01l27d99	30	42	(	(	-LRB-
cord-320417-01l27d99	30	43	SNPs	SNPs	NNP
cord-320417-01l27d99	30	44	)	)	-RRB-
cord-320417-01l27d99	30	45	.	.	.
cord-320417-01l27d99	31	1	Clade	clade	NN
cord-320417-01l27d99	31	2	"	"	``
cord-320417-01l27d99	31	3	L	L	NNP
cord-320417-01l27d99	31	4	"	"	''
cord-320417-01l27d99	31	5	is	be	VBZ
cord-320417-01l27d99	31	6	the	the	DT
cord-320417-01l27d99	31	7	reference	reference	NN
cord-320417-01l27d99	31	8	genome	genome	NN
cord-320417-01l27d99	31	9	(	(	-LRB-
cord-320417-01l27d99	31	10	NC_045512.2	NC_045512.2	NNP
cord-320417-01l27d99	31	11	)	)	-RRB-
cord-320417-01l27d99	31	12	found	find	VBN
cord-320417-01l27d99	31	13	in	in	IN
cord-320417-01l27d99	31	14	China	China	NNP
cord-320417-01l27d99	31	15	;	;	:
cord-320417-01l27d99	32	1	clade	clade	NN
cord-320417-01l27d99	32	2	"	"	``
cord-320417-01l27d99	32	3	S	S	NNP
cord-320417-01l27d99	32	4	"	"	''
cord-320417-01l27d99	32	5	is	be	VBZ
cord-320417-01l27d99	32	6	named	name	VBN
cord-320417-01l27d99	32	7	after	after	IN
cord-320417-01l27d99	32	8	the	the	DT
cord-320417-01l27d99	32	9	mutation	mutation	NN
cord-320417-01l27d99	32	10	in	in	IN
cord-320417-01l27d99	32	11	ORF8	ORF8	NNP
cord-320417-01l27d99	32	12	:	:	:
cord-320417-01l27d99	33	1	L84S	l84s	NN
cord-320417-01l27d99	33	2	(	(	-LRB-
cord-320417-01l27d99	33	3	with	with	IN
cord-320417-01l27d99	33	4	a	a	DT
cord-320417-01l27d99	33	5	transition	transition	NN
cord-320417-01l27d99	33	6	mutation	mutation	NN
cord-320417-01l27d99	33	7	of	of	IN
cord-320417-01l27d99	33	8	T28144C	T28144C	NNP
cord-320417-01l27d99	33	9	and	and	CC
cord-320417-01l27d99	33	10	co	co	NN
cord-320417-01l27d99	33	11	-	-	NN
cord-320417-01l27d99	33	12	occurring	occur	VBG
cord-320417-01l27d99	33	13	with	with	IN
cord-320417-01l27d99	33	14	another	another	DT
cord-320417-01l27d99	33	15	transition	transition	NN
cord-320417-01l27d99	33	16	mutation	mutation	NN
cord-320417-01l27d99	33	17	of	of	IN
cord-320417-01l27d99	33	18	C8782	C8782	NNP
cord-320417-01l27d99	33	19	T	T	NNP
cord-320417-01l27d99	33	20	)	)	-RRB-
cord-320417-01l27d99	33	21	;	;	:
cord-320417-01l27d99	33	22	clade	clade	NN
cord-320417-01l27d99	33	23	"	"	``
cord-320417-01l27d99	33	24	V	v	NN
cord-320417-01l27d99	33	25	"	"	''
cord-320417-01l27d99	33	26	is	be	VBZ
cord-320417-01l27d99	33	27	named	name	VBN
cord-320417-01l27d99	33	28	after	after	IN
cord-320417-01l27d99	33	29	the	the	DT
cord-320417-01l27d99	33	30	mutation	mutation	NN
cord-320417-01l27d99	33	31	in	in	IN
cord-320417-01l27d99	33	32	ORF3a	ORF3a	NNP
cord-320417-01l27d99	33	33	:	:	:
cord-320417-01l27d99	34	1	G251V	G251V	NNP
cord-320417-01l27d99	34	2	(	(	-LRB-
cord-320417-01l27d99	34	3	with	with	IN
cord-320417-01l27d99	34	4	a	a	DT
cord-320417-01l27d99	34	5	transversion	transversion	NN
cord-320417-01l27d99	34	6	mutation	mutation	NN
cord-320417-01l27d99	34	7	of	of	IN
cord-320417-01l27d99	34	8	G26144	G26144	NNP
cord-320417-01l27d99	34	9	T	T	NNP
cord-320417-01l27d99	34	10	and	and	CC
cord-320417-01l27d99	34	11	co	co	NN
cord-320417-01l27d99	34	12	-	-	NN
cord-320417-01l27d99	34	13	occurring	occur	VBG
cord-320417-01l27d99	34	14	with	with	IN
cord-320417-01l27d99	34	15	another	another	DT
cord-320417-01l27d99	34	16	transversion	transversion	NN
cord-320417-01l27d99	34	17	mutation	mutation	NN
cord-320417-01l27d99	34	18	of	of	IN
cord-320417-01l27d99	34	19	G11083	G11083	NNP
cord-320417-01l27d99	34	20	T	T	NNP
cord-320417-01l27d99	34	21	)	)	-RRB-
cord-320417-01l27d99	35	1	;	;	:
cord-320417-01l27d99	35	2	clade	clade	NN
cord-320417-01l27d99	35	3	"	"	``
cord-320417-01l27d99	35	4	G	g	NN
cord-320417-01l27d99	35	5	"	"	''
cord-320417-01l27d99	35	6	is	be	VBZ
cord-320417-01l27d99	35	7	named	name	VBN
cord-320417-01l27d99	35	8	after	after	IN
cord-320417-01l27d99	35	9	the	the	DT
cord-320417-01l27d99	35	10	D614	d614	NN
cord-320417-01l27d99	35	11	G	g	NN
cord-320417-01l27d99	35	12	mutation	mutation	NN
cord-320417-01l27d99	35	13	in	in	IN
cord-320417-01l27d99	35	14	the	the	DT
cord-320417-01l27d99	35	15	spike	spike	NN
cord-320417-01l27d99	35	16	protein	protein	NN
cord-320417-01l27d99	35	17	(	(	-LRB-
cord-320417-01l27d99	35	18	with	with	IN
cord-320417-01l27d99	35	19	a	a	DT
cord-320417-01l27d99	35	20	transition	transition	NN
cord-320417-01l27d99	35	21	mutation	mutation	NN
cord-320417-01l27d99	35	22	of	of	IN
cord-320417-01l27d99	35	23	A23403	A23403	NNP
cord-320417-01l27d99	35	24	G	G	NNP
cord-320417-01l27d99	35	25	and	and	CC
cord-320417-01l27d99	35	26	co	co	NN
cord-320417-01l27d99	35	27	-	-	NN
cord-320417-01l27d99	35	28	occurring	occur	VBG
cord-320417-01l27d99	35	29	with	with	IN
cord-320417-01l27d99	35	30	other	other	JJ
cord-320417-01l27d99	35	31	three	three	CD
cord-320417-01l27d99	35	32	transition	transition	NN
cord-320417-01l27d99	35	33	mutations	mutation	NNS
cord-320417-01l27d99	35	34	of	of	IN
cord-320417-01l27d99	35	35	C241	c241	CD
cord-320417-01l27d99	35	36	T	T	NNP
cord-320417-01l27d99	35	37	,	,	,
cord-320417-01l27d99	35	38	C3037	C3037	NNP
cord-320417-01l27d99	35	39	T	T	NNP
cord-320417-01l27d99	35	40	,	,	,
cord-320417-01l27d99	35	41	C14408	C14408	NNP
cord-320417-01l27d99	35	42	T	T	NNP
cord-320417-01l27d99	35	43	)	)	-RRB-
cord-320417-01l27d99	35	44	.	.	.
cord-320417-01l27d99	36	1	Two	two	CD
cord-320417-01l27d99	36	2	derivative	derivative	JJ
cord-320417-01l27d99	36	3	clades	clade	NNS
cord-320417-01l27d99	36	4	from	from	IN
cord-320417-01l27d99	36	5	the	the	DT
cord-320417-01l27d99	36	6	G	g	NN
cord-320417-01l27d99	36	7	clade	clade	NN
cord-320417-01l27d99	36	8	are	be	VBP
cord-320417-01l27d99	36	9	the	the	DT
cord-320417-01l27d99	36	10	"	"	``
cord-320417-01l27d99	36	11	GH	GH	NNP
cord-320417-01l27d99	36	12	"	"	''
cord-320417-01l27d99	36	13	clade	clade	NN
cord-320417-01l27d99	36	14	characterized	characterize	VBN
cord-320417-01l27d99	36	15	by	by	IN
cord-320417-01l27d99	36	16	a	a	DT
cord-320417-01l27d99	36	17	mutation	mutation	NN
cord-320417-01l27d99	36	18	ORF3a	orf3a	XX
cord-320417-01l27d99	36	19	:	:	:
cord-320417-01l27d99	36	20	Q57H	q57h	NN
cord-320417-01l27d99	36	21	(	(	-LRB-
cord-320417-01l27d99	36	22	G25563	G25563	NNP
cord-320417-01l27d99	36	23	T	T	NNP
cord-320417-01l27d99	36	24	)	)	-RRB-
cord-320417-01l27d99	36	25	,	,	,
cord-320417-01l27d99	36	26	and	and	CC
cord-320417-01l27d99	36	27	the	the	DT
cord-320417-01l27d99	36	28	"	"	``
cord-320417-01l27d99	36	29	GR	GR	NNP
cord-320417-01l27d99	36	30	"	"	''
cord-320417-01l27d99	36	31	clade	clade	NN
cord-320417-01l27d99	36	32	characterized	characterize	VBN
cord-320417-01l27d99	36	33	by	by	IN
cord-320417-01l27d99	36	34	the	the	DT
cord-320417-01l27d99	36	35	trinucleotide	trinucleotide	NNP
cord-320417-01l27d99	36	36	mutations	mutation	NNS
cord-320417-01l27d99	36	37	in	in	IN
cord-320417-01l27d99	36	38	the	the	DT
cord-320417-01l27d99	36	39	nucleocapsid	nucleocapsid	NNP
cord-320417-01l27d99	36	40	gene	gene	NN
cord-320417-01l27d99	36	41	,	,	,
cord-320417-01l27d99	36	42	inducing	induce	VBG
cord-320417-01l27d99	36	43	G28881A	G28881A	NNP
cord-320417-01l27d99	36	44	,	,	,
cord-320417-01l27d99	36	45	G28882A	G28882A	NNP
cord-320417-01l27d99	36	46	and	and	CC
cord-320417-01l27d99	36	47	G28883C.	g28883c.	NN
cord-320417-01l27d99	36	48	From	from	IN
cord-320417-01l27d99	36	49	these	these	DT
cord-320417-01l27d99	36	50	85	85	CD
cord-320417-01l27d99	36	51	genome	genome	NN
cord-320417-01l27d99	36	52	sequences	sequence	NNS
cord-320417-01l27d99	36	53	,	,	,
cord-320417-01l27d99	36	54	44	44	CD
cord-320417-01l27d99	36	55	belong	belong	VBP
cord-320417-01l27d99	36	56	to	to	IN
cord-320417-01l27d99	36	57	the	the	DT
cord-320417-01l27d99	36	58	S	S	NNP
cord-320417-01l27d99	36	59	clade	clade	NN
cord-320417-01l27d99	36	60	(	(	-LRB-
cord-320417-01l27d99	36	61	in	in	IN
cord-320417-01l27d99	36	62	magenta	magenta	NN
cord-320417-01l27d99	36	63	)	)	-RRB-
cord-320417-01l27d99	36	64	,	,	,
cord-320417-01l27d99	36	65	1	1	CD
cord-320417-01l27d99	36	66	to	to	IN
cord-320417-01l27d99	36	67	the	the	DT
cord-320417-01l27d99	36	68	V	v	NN
cord-320417-01l27d99	36	69	clade	clade	NN
cord-320417-01l27d99	36	70	(	(	-LRB-
cord-320417-01l27d99	36	71	in	in	IN
cord-320417-01l27d99	36	72	red	red	NNP
cord-320417-01l27d99	36	73	)	)	-RRB-
cord-320417-01l27d99	36	74	,	,	,
cord-320417-01l27d99	36	75	18	18	CD
cord-320417-01l27d99	36	76	to	to	IN
cord-320417-01l27d99	36	77	the	the	DT
cord-320417-01l27d99	36	78	G	g	NN
cord-320417-01l27d99	36	79	clade	clade	NN
cord-320417-01l27d99	36	80	(	(	-LRB-
cord-320417-01l27d99	36	81	in	in	IN
cord-320417-01l27d99	36	82	green	green	JJ
cord-320417-01l27d99	36	83	)	)	-RRB-
cord-320417-01l27d99	36	84	,	,	,
cord-320417-01l27d99	36	85	18	18	CD
cord-320417-01l27d99	36	86	again	again	RB
cord-320417-01l27d99	36	87	to	to	IN
cord-320417-01l27d99	36	88	the	the	DT
cord-320417-01l27d99	36	89	GH	GH	NNP
cord-320417-01l27d99	36	90	clade	clade	NN
cord-320417-01l27d99	36	91	(	(	-LRB-
cord-320417-01l27d99	36	92	in	in	IN
cord-320417-01l27d99	36	93	cyan	cyan	NNP
cord-320417-01l27d99	36	94	)	)	-RRB-
cord-320417-01l27d99	36	95	,	,	,
cord-320417-01l27d99	36	96	and	and	CC
cord-320417-01l27d99	36	97	4	4	CD
cord-320417-01l27d99	36	98	to	to	IN
cord-320417-01l27d99	36	99	the	the	DT
cord-320417-01l27d99	36	100	GR	GR	NNP
cord-320417-01l27d99	36	101	clade	clade	NN
cord-320417-01l27d99	36	102	(	(	-LRB-
cord-320417-01l27d99	36	103	in	in	IN
cord-320417-01l27d99	36	104	orange	orange	NN
cord-320417-01l27d99	36	105	)	)	-RRB-
cord-320417-01l27d99	36	106	.	.	.
cord-320417-01l27d99	37	1	The	the	DT
cord-320417-01l27d99	37	2	same	same	JJ
cord-320417-01l27d99	37	3	coloring	coloring	NN
cord-320417-01l27d99	37	4	scheme	scheme	NN
cord-320417-01l27d99	37	5	for	for	IN
cord-320417-01l27d99	37	6	distinct	distinct	JJ
cord-320417-01l27d99	37	7	clades	clade	NNS
cord-320417-01l27d99	37	8	will	will	MD
cord-320417-01l27d99	37	9	be	be	VB
cord-320417-01l27d99	37	10	used	use	VBN
cord-320417-01l27d99	37	11	throughout	throughout	IN
cord-320417-01l27d99	37	12	the	the	DT
cord-320417-01l27d99	37	13	paper	paper	NN
cord-320417-01l27d99	37	14	for	for	IN
cord-320417-01l27d99	37	15	convenience	convenience	NN
cord-320417-01l27d99	37	16	.	.	.
cord-320417-01l27d99	38	1	Profiling	profiling	NN
cord-320417-01l27d99	38	2	SNPs	SNPs	NNPS
cord-320417-01l27d99	38	3	is	be	VBZ
cord-320417-01l27d99	38	4	another	another	DT
cord-320417-01l27d99	38	5	way	way	NN
cord-320417-01l27d99	38	6	to	to	TO
cord-320417-01l27d99	38	7	show	show	VB
cord-320417-01l27d99	38	8	frequencies	frequency	NNS
cord-320417-01l27d99	38	9	of	of	IN
cord-320417-01l27d99	38	10	mutations	mutation	NNS
cord-320417-01l27d99	38	11	within	within	IN
cord-320417-01l27d99	38	12	a	a	DT
cord-320417-01l27d99	38	13	clade	clade	NN
cord-320417-01l27d99	38	14	.	.	.
cord-320417-01l27d99	39	1	Shown	show	VBN
cord-320417-01l27d99	39	2	in	in	IN
cord-320417-01l27d99	39	3	Figure	figure	NN
cord-320417-01l27d99	39	4	 	 	_SP
cord-320417-01l27d99	39	5	2	2	CD
cord-320417-01l27d99	39	6	are	be	VBP
cord-320417-01l27d99	39	7	profiles	profile	NNS
cord-320417-01l27d99	39	8	of	of	IN
cord-320417-01l27d99	39	9	two	two	CD
cord-320417-01l27d99	39	10	dominant	dominant	JJ
cord-320417-01l27d99	39	11	clades	clade	NNS
cord-320417-01l27d99	39	12	,	,	,
cord-320417-01l27d99	39	13	S	S	NNP
cord-320417-01l27d99	39	14	(	(	-LRB-
cord-320417-01l27d99	39	15	Fig	Fig	NNP
cord-320417-01l27d99	39	16	2A	2a	CD
cord-320417-01l27d99	39	17	)	)	-RRB-
cord-320417-01l27d99	39	18	and	and	CC
cord-320417-01l27d99	39	19	G	G	NNP
cord-320417-01l27d99	39	20	(	(	-LRB-
cord-320417-01l27d99	39	21	Fig	Fig	NNP
cord-320417-01l27d99	39	22	2B	2b	CD
cord-320417-01l27d99	39	23	)	)	-RRB-
cord-320417-01l27d99	39	24	.	.	.
cord-320417-01l27d99	40	1	High	high	JJ
cord-320417-01l27d99	40	2	-	-	HYPH
cord-320417-01l27d99	40	3	profile	profile	NN
cord-320417-01l27d99	40	4	SNPs	snp	NNS
cord-320417-01l27d99	40	5	are	be	VBP
cord-320417-01l27d99	40	6	those	those	DT
cord-320417-01l27d99	40	7	with	with	IN
cord-320417-01l27d99	40	8	top	top	JJ
cord-320417-01l27d99	40	9	heights	height	NNS
cord-320417-01l27d99	40	10	representing	represent	VBG
cord-320417-01l27d99	40	11	high	high	JJ
cord-320417-01l27d99	40	12	frequency	frequency	NN
cord-320417-01l27d99	40	13	at	at	IN
cord-320417-01l27d99	40	14	special	special	JJ
cord-320417-01l27d99	40	15	genome	genome	NN
cord-320417-01l27d99	40	16	loci	locus	NNS
cord-320417-01l27d99	40	17	.	.	.
cord-320417-01l27d99	41	1	Counts	count	NNS
cord-320417-01l27d99	41	2	of	of	IN
cord-320417-01l27d99	41	3	less	less	JJR
cord-320417-01l27d99	41	4	than	than	IN
cord-320417-01l27d99	41	5	two	two	CD
cord-320417-01l27d99	41	6	were	be	VBD
cord-320417-01l27d99	41	7	omitted	omit	VBN
cord-320417-01l27d99	41	8	to	to	TO
cord-320417-01l27d99	41	9	reduce	reduce	VB
cord-320417-01l27d99	41	10	the	the	DT
cord-320417-01l27d99	41	11	background	background	NN
cord-320417-01l27d99	41	12	noise	noise	NN
cord-320417-01l27d99	41	13	caused	cause	VBN
cord-320417-01l27d99	41	14	by	by	IN
cord-320417-01l27d99	41	15	low	low	JJ
cord-320417-01l27d99	41	16	-	-	HYPH
cord-320417-01l27d99	41	17	profile	profile	NN
cord-320417-01l27d99	41	18	de	de	FW
cord-320417-01l27d99	41	19	novo	novo	NNP
cord-320417-01l27d99	41	20	mutations	mutation	NNS
cord-320417-01l27d99	41	21	.	.	.
cord-320417-01l27d99	42	1	Being	be	VBG
cord-320417-01l27d99	42	2	unique	unique	JJ
cord-320417-01l27d99	42	3	to	to	IN
cord-320417-01l27d99	42	4	distinct	distinct	JJ
cord-320417-01l27d99	42	5	clades	clade	NNS
cord-320417-01l27d99	42	6	,	,	,
cord-320417-01l27d99	42	7	high	high	JJ
cord-320417-01l27d99	42	8	-	-	HYPH
cord-320417-01l27d99	42	9	profile	profile	NN
cord-320417-01l27d99	42	10	SNPs	snp	NNS
cord-320417-01l27d99	42	11	are	be	VBP
cord-320417-01l27d99	42	12	considered	consider	VBN
cord-320417-01l27d99	42	13	as	as	IN
cord-320417-01l27d99	42	14	clade	clade	NN
cord-320417-01l27d99	42	15	-	-	HYPH
cord-320417-01l27d99	42	16	defining	define	VBG
cord-320417-01l27d99	42	17	SNPs	snp	NNS
cord-320417-01l27d99	42	18	.	.	.
cord-320417-01l27d99	43	1	The	the	DT
cord-320417-01l27d99	43	2	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	43	3	analysis	analysis	NN
cord-320417-01l27d99	43	4	,	,	,
cord-320417-01l27d99	43	5	as	as	IN
cord-320417-01l27d99	43	6	commonly	commonly	RB
cord-320417-01l27d99	43	7	used	use	VBN
cord-320417-01l27d99	43	8	to	to	TO
cord-320417-01l27d99	43	9	display	display	VB
cord-320417-01l27d99	43	10	evolutionary	evolutionary	JJ
cord-320417-01l27d99	43	11	relationships	relationship	NNS
cord-320417-01l27d99	43	12	among	among	IN
cord-320417-01l27d99	43	13	species	specie	NNS
cord-320417-01l27d99	43	14	,	,	,
cord-320417-01l27d99	43	15	employs	employ	VBZ
cord-320417-01l27d99	43	16	algorithms	algorithm	NNS
cord-320417-01l27d99	43	17	to	to	TO
cord-320417-01l27d99	43	18	calculate	calculate	VB
cord-320417-01l27d99	43	19	the	the	DT
cord-320417-01l27d99	43	20	evolutionary	evolutionary	JJ
cord-320417-01l27d99	43	21	difference	difference	NN
cord-320417-01l27d99	43	22	between	between	IN
cord-320417-01l27d99	43	23	two	two	CD
cord-320417-01l27d99	43	24	species	specie	NNS
cord-320417-01l27d99	43	25	and	and	CC
cord-320417-01l27d99	43	26	uses	use	VBZ
cord-320417-01l27d99	43	27	estimated	estimate	VBN
cord-320417-01l27d99	43	28	distances	distance	NNS
cord-320417-01l27d99	43	29	to	to	TO
cord-320417-01l27d99	43	30	draw	draw	VB
cord-320417-01l27d99	43	31	branching	branch	VBG
cord-320417-01l27d99	43	32	patterns	pattern	NNS
cord-320417-01l27d99	43	33	that	that	WDT
cord-320417-01l27d99	43	34	display	display	VBP
cord-320417-01l27d99	43	35	how	how	WRB
cord-320417-01l27d99	43	36	the	the	DT
cord-320417-01l27d99	43	37	species	specie	NNS
cord-320417-01l27d99	43	38	evolved	evolve	VBD
cord-320417-01l27d99	43	39	from	from	IN
cord-320417-01l27d99	43	40	a	a	DT
cord-320417-01l27d99	43	41	common	common	JJ
cord-320417-01l27d99	43	42	ancestor	ancestor	NN
cord-320417-01l27d99	43	43	.	.	.
cord-320417-01l27d99	44	1	Although	although	IN
cord-320417-01l27d99	44	2	a	a	DT
cord-320417-01l27d99	44	3	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	44	4	tree	tree	NN
cord-320417-01l27d99	44	5	is	be	VBZ
cord-320417-01l27d99	44	6	appealing	appeal	VBG
cord-320417-01l27d99	44	7	,	,	,
cord-320417-01l27d99	44	8	it	-PRON-	PRP
cord-320417-01l27d99	44	9	traditionally	traditionally	RB
cord-320417-01l27d99	44	10	ignores	ignore	VBZ
cord-320417-01l27d99	44	11	the	the	DT
cord-320417-01l27d99	44	12	recombination	recombination	NN
cord-320417-01l27d99	44	13	event	event	NN
cord-320417-01l27d99	44	14	that	that	WDT
cord-320417-01l27d99	44	15	is	be	VBZ
cord-320417-01l27d99	44	16	another	another	DT
cord-320417-01l27d99	44	17	major	major	JJ
cord-320417-01l27d99	44	18	driving	drive	VBG
cord-320417-01l27d99	44	19	force	force	NN
cord-320417-01l27d99	44	20	in	in	IN
cord-320417-01l27d99	44	21	evolution	evolution	NN
cord-320417-01l27d99	44	22	and	and	CC
cord-320417-01l27d99	44	23	causes	cause	NNS
cord-320417-01l27d99	44	24	closely	closely	RB
cord-320417-01l27d99	44	25	related	relate	VBN
cord-320417-01l27d99	44	26	species	specie	NNS
cord-320417-01l27d99	44	27	to	to	TO
cord-320417-01l27d99	44	28	have	have	VB
cord-320417-01l27d99	44	29	different	different	JJ
cord-320417-01l27d99	44	30	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	44	31	histories	history	NNS
cord-320417-01l27d99	44	32	.	.	.
cord-320417-01l27d99	45	1	SARS	SARS	NNP
cord-320417-01l27d99	45	2	-	-	HYPH
cord-320417-01l27d99	45	3	CoV-2	CoV-2	NNP
cord-320417-01l27d99	45	4	is	be	VBZ
cord-320417-01l27d99	45	5	an	an	DT
cord-320417-01l27d99	45	6	RNA	RNA	NNP
cord-320417-01l27d99	45	7	virus	virus	NN
cord-320417-01l27d99	45	8	with	with	IN
cord-320417-01l27d99	45	9	limited	limited	JJ
cord-320417-01l27d99	45	10	genome	genome	NN
cord-320417-01l27d99	45	11	length	length	NN
cord-320417-01l27d99	45	12	,	,	,
cord-320417-01l27d99	45	13	but	but	CC
cord-320417-01l27d99	45	14	its	-PRON-	PRP$
cord-320417-01l27d99	45	15	high	high	JJ
cord-320417-01l27d99	45	16	mutation	mutation	NN
cord-320417-01l27d99	45	17	rate	rate	NN
cord-320417-01l27d99	45	18	and	and	CC
cord-320417-01l27d99	45	19	homologous	homologous	JJ
cord-320417-01l27d99	45	20	genetic	genetic	JJ
cord-320417-01l27d99	45	21	recombination	recombination	NN
cord-320417-01l27d99	45	22	nonetheless	nonetheless	RB
cord-320417-01l27d99	45	23	gave	give	VBD
cord-320417-01l27d99	45	24	rise	rise	NN
cord-320417-01l27d99	45	25	to	to	IN
cord-320417-01l27d99	45	26	exponentially	exponentially	RB
cord-320417-01l27d99	45	27	increased	increase	VBN
cord-320417-01l27d99	45	28	variants	variant	NNS
cord-320417-01l27d99	45	29	.	.	.
cord-320417-01l27d99	46	1	Classical	classical	JJ
cord-320417-01l27d99	46	2	studies	study	NNS
cord-320417-01l27d99	46	3	based	base	VBN
cord-320417-01l27d99	46	4	on	on	IN
cord-320417-01l27d99	46	5	consensus	consensus	NN
cord-320417-01l27d99	46	6	sequences	sequence	NNS
cord-320417-01l27d99	46	7	become	become	VBP
cord-320417-01l27d99	46	8	insufficient	insufficient	JJ
cord-320417-01l27d99	46	9	to	to	TO
cord-320417-01l27d99	46	10	interpret	interpret	VB
cord-320417-01l27d99	46	11	its	-PRON-	PRP$
cord-320417-01l27d99	46	12	adaptive	adaptive	JJ
cord-320417-01l27d99	46	13	potential	potential	NN
cord-320417-01l27d99	46	14	.	.	.
cord-320417-01l27d99	47	1	Besides	besides	RB
cord-320417-01l27d99	47	2	,	,	,
cord-320417-01l27d99	47	3	drawing	draw	VBG
cord-320417-01l27d99	47	4	a	a	DT
cord-320417-01l27d99	47	5	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	47	6	tree	tree	NN
cord-320417-01l27d99	47	7	for	for	IN
cord-320417-01l27d99	47	8	many	many	JJ
cord-320417-01l27d99	47	9	species	specie	NNS
cord-320417-01l27d99	47	10	becomes	become	VBZ
cord-320417-01l27d99	47	11	impractical	impractical	JJ
cord-320417-01l27d99	47	12	due	due	IN
cord-320417-01l27d99	47	13	to	to	IN
cord-320417-01l27d99	47	14	constraints	constraint	NNS
cord-320417-01l27d99	47	15	in	in	IN
cord-320417-01l27d99	47	16	the	the	DT
cord-320417-01l27d99	47	17	drawing	drawing	NN
cord-320417-01l27d99	47	18	space	space	NN
cord-320417-01l27d99	47	19	(	(	-LRB-
cord-320417-01l27d99	47	20	e.g.	e.g.	RB
cord-320417-01l27d99	47	21	it	-PRON-	PRP
cord-320417-01l27d99	47	22	was	be	VBD
cord-320417-01l27d99	47	23	difficult	difficult	JJ
cord-320417-01l27d99	47	24	to	to	TO
cord-320417-01l27d99	47	25	layout	layout	VB
cord-320417-01l27d99	47	26	merely	merely	RB
cord-320417-01l27d99	47	27	85	85	CD
cord-320417-01l27d99	47	28	sequences	sequence	NNS
cord-320417-01l27d99	47	29	in	in	IN
cord-320417-01l27d99	47	30	Figure	figure	NN
cord-320417-01l27d99	47	31	1	1	CD
cord-320417-01l27d99	47	32	)	)	-RRB-
cord-320417-01l27d99	47	33	.	.	.
cord-320417-01l27d99	48	1	An	an	DT
cord-320417-01l27d99	48	2	alternative	alternative	JJ
cord-320417-01l27d99	48	3	method	method	NN
cord-320417-01l27d99	48	4	is	be	VBZ
cord-320417-01l27d99	48	5	needed	need	VBN
cord-320417-01l27d99	48	6	for	for	IN
cord-320417-01l27d99	48	7	the	the	DT
cord-320417-01l27d99	48	8	impending	impending	JJ
cord-320417-01l27d99	48	9	era	era	NN
cord-320417-01l27d99	48	10	of	of	IN
cord-320417-01l27d99	48	11	"	"	``
cord-320417-01l27d99	48	12	big	big	JJ
cord-320417-01l27d99	48	13	-	-	HYPH
cord-320417-01l27d99	48	14	data	datum	NNS
cord-320417-01l27d99	48	15	"	"	''
cord-320417-01l27d99	48	16	,	,	,
cord-320417-01l27d99	48	17	when	when	WRB
cord-320417-01l27d99	48	18	the	the	DT
cord-320417-01l27d99	48	19	full	full	JJ
cord-320417-01l27d99	48	20	wealth	wealth	NN
cord-320417-01l27d99	48	21	of	of	IN
cord-320417-01l27d99	48	22	sequencing	sequencing	NN
cord-320417-01l27d99	48	23	collections	collection	NNS
cord-320417-01l27d99	48	24	is	be	VBZ
cord-320417-01l27d99	48	25	becoming	become	VBG
cord-320417-01l27d99	48	26	available	available	JJ
cord-320417-01l27d99	48	27	.	.	.
cord-320417-01l27d99	49	1	This	this	DT
cord-320417-01l27d99	49	2	new	new	JJ
cord-320417-01l27d99	49	3	method	method	NN
cord-320417-01l27d99	49	4	should	should	MD
cord-320417-01l27d99	49	5	also	also	RB
cord-320417-01l27d99	49	6	demonstrate	demonstrate	VB
cord-320417-01l27d99	49	7	the	the	DT
cord-320417-01l27d99	49	8	links	link	NNS
cord-320417-01l27d99	49	9	between	between	IN
cord-320417-01l27d99	49	10	nucleotide	nucleotide	JJ
cord-320417-01l27d99	49	11	variations	variation	NNS
cord-320417-01l27d99	49	12	on	on	IN
cord-320417-01l27d99	49	13	the	the	DT
cord-320417-01l27d99	49	14	same	same	JJ
cord-320417-01l27d99	49	15	genome	genome	NN
cord-320417-01l27d99	49	16	.	.	.
cord-320417-01l27d99	50	1	Here	here	RB
cord-320417-01l27d99	50	2	,	,	,
cord-320417-01l27d99	50	3	I	-PRON-	PRP
cord-320417-01l27d99	50	4	propose	propose	VBP
cord-320417-01l27d99	50	5	a	a	DT
cord-320417-01l27d99	50	6	2D	2d	JJ
cord-320417-01l27d99	50	7	mapping	mapping	NN
cord-320417-01l27d99	50	8	for	for	IN
cord-320417-01l27d99	50	9	co	co	NN
cord-320417-01l27d99	50	10	-	-	JJ
cord-320417-01l27d99	50	11	occurring	occur	VBG
cord-320417-01l27d99	50	12	SNP	SNP	NNP
cord-320417-01l27d99	50	13	pairs	pair	NNS
cord-320417-01l27d99	50	14	.	.	.
cord-320417-01l27d99	51	1	In	in	IN
cord-320417-01l27d99	51	2	brief	brief	NN
cord-320417-01l27d99	51	3	,	,	,
cord-320417-01l27d99	51	4	a	a	DT
cord-320417-01l27d99	51	5	matrix	matrix	NN
cord-320417-01l27d99	51	6	(	(	-LRB-
cord-320417-01l27d99	51	7	n	n	NN
cord-320417-01l27d99	51	8	x	x	NNP
cord-320417-01l27d99	51	9	n	n	NNP
cord-320417-01l27d99	51	10	)	)	-RRB-
cord-320417-01l27d99	51	11	is	be	VBZ
cord-320417-01l27d99	51	12	created	create	VBN
cord-320417-01l27d99	51	13	in	in	IN
cord-320417-01l27d99	51	14	which	which	WDT
cord-320417-01l27d99	51	15	"	"	``
cord-320417-01l27d99	51	16	n	n	NNP
cord-320417-01l27d99	51	17	"	"	''
cord-320417-01l27d99	51	18	is	be	VBZ
cord-320417-01l27d99	51	19	the	the	DT
cord-320417-01l27d99	51	20	genome	genome	NN
cord-320417-01l27d99	51	21	length	length	NN
cord-320417-01l27d99	51	22	.	.	.
cord-320417-01l27d99	52	1	From	from	IN
cord-320417-01l27d99	52	2	each	each	DT
cord-320417-01l27d99	52	3	genome	genome	NN
cord-320417-01l27d99	52	4	sequence	sequence	NN
cord-320417-01l27d99	52	5	,	,	,
cord-320417-01l27d99	52	6	any	any	DT
cord-320417-01l27d99	52	7	detected	detect	VBN
cord-320417-01l27d99	52	8	co	co	NN
cord-320417-01l27d99	52	9	-	-	JJ
cord-320417-01l27d99	52	10	occurring	occur	VBG
cord-320417-01l27d99	52	11	SNP	SNP	NNP
cord-320417-01l27d99	52	12	pair	pair	NN
cord-320417-01l27d99	52	13	will	will	MD
cord-320417-01l27d99	52	14	be	be	VB
cord-320417-01l27d99	52	15	used	use	VBN
cord-320417-01l27d99	52	16	to	to	TO
cord-320417-01l27d99	52	17	increase	increase	VB
cord-320417-01l27d99	52	18	the	the	DT
cord-320417-01l27d99	52	19	value	value	NN
cord-320417-01l27d99	52	20	of	of	IN
cord-320417-01l27d99	52	21	M	M	NNP
cord-320417-01l27d99	52	22	ij	ij	NN
cord-320417-01l27d99	52	23	by	by	IN
cord-320417-01l27d99	52	24	1	1	CD
cord-320417-01l27d99	52	25	,	,	,
cord-320417-01l27d99	52	26	where	where	WRB
cord-320417-01l27d99	52	27	"	"	``
cord-320417-01l27d99	52	28	i	i	PRP
cord-320417-01l27d99	52	29	"	"	''
cord-320417-01l27d99	52	30	and	and	CC
cord-320417-01l27d99	52	31	"	"	``
cord-320417-01l27d99	52	32	j	j	NNP
cord-320417-01l27d99	52	33	"	"	''
cord-320417-01l27d99	52	34	are	be	VBP
cord-320417-01l27d99	52	35	the	the	DT
cord-320417-01l27d99	52	36	two	two	CD
cord-320417-01l27d99	52	37	positions	position	NNS
cord-320417-01l27d99	52	38	(	(	-LRB-
cord-320417-01l27d99	52	39	loci	locus	NNS
cord-320417-01l27d99	52	40	)	)	-RRB-
cord-320417-01l27d99	52	41	of	of	IN
cord-320417-01l27d99	52	42	nucleotides	nucleotide	NNS
cord-320417-01l27d99	52	43	from	from	IN
cord-320417-01l27d99	52	44	that	that	DT
cord-320417-01l27d99	52	45	SNP	SNP	NNP
cord-320417-01l27d99	52	46	pair	pair	NN
cord-320417-01l27d99	52	47	.	.	.
cord-320417-01l27d99	53	1	The	the	DT
cord-320417-01l27d99	53	2	final	final	JJ
cord-320417-01l27d99	53	3	matrix	matrix	NN
cord-320417-01l27d99	53	4	is	be	VBZ
cord-320417-01l27d99	53	5	then	then	RB
cord-320417-01l27d99	53	6	normalized	normalize	VBN
cord-320417-01l27d99	53	7	by	by	IN
cord-320417-01l27d99	53	8	dividing	divide	VBG
cord-320417-01l27d99	53	9	each	each	DT
cord-320417-01l27d99	53	10	element	element	NN
cord-320417-01l27d99	53	11	by	by	IN
cord-320417-01l27d99	53	12	the	the	DT
cord-320417-01l27d99	53	13	total	total	JJ
cord-320417-01l27d99	53	14	number	number	NN
cord-320417-01l27d99	53	15	of	of	IN
cord-320417-01l27d99	53	16	genome	genome	NN
cord-320417-01l27d99	53	17	sequences	sequence	NNS
cord-320417-01l27d99	53	18	.	.	.
cord-320417-01l27d99	54	1	Directly	directly	RB
cord-320417-01l27d99	54	2	plotting	plot	VBG
cord-320417-01l27d99	54	3	of	of	IN
cord-320417-01l27d99	54	4	this	this	DT
cord-320417-01l27d99	54	5	matrix	matrix	NN
cord-320417-01l27d99	54	6	into	into	IN
cord-320417-01l27d99	54	7	a	a	DT
cord-320417-01l27d99	54	8	2D	2d	JJ
cord-320417-01l27d99	54	9	scaled	scale	VBN
cord-320417-01l27d99	54	10	map	map	NN
cord-320417-01l27d99	54	11	will	will	MD
cord-320417-01l27d99	54	12	generate	generate	VB
cord-320417-01l27d99	54	13	a	a	DT
cord-320417-01l27d99	54	14	diagonally	diagonally	RB
cord-320417-01l27d99	54	15	symmetric	symmetric	JJ
cord-320417-01l27d99	54	16	pattern	pattern	NN
cord-320417-01l27d99	54	17	that	that	WDT
cord-320417-01l27d99	54	18	displays	display	VBZ
cord-320417-01l27d99	54	19	the	the	DT
cord-320417-01l27d99	54	20	distribution	distribution	NN
cord-320417-01l27d99	54	21	of	of	IN
cord-320417-01l27d99	54	22	population	population	NN
cord-320417-01l27d99	54	23	percentages	percentage	NNS
cord-320417-01l27d99	54	24	for	for	IN
cord-320417-01l27d99	54	25	every	every	DT
cord-320417-01l27d99	54	26	co	co	NN
cord-320417-01l27d99	54	27	-	-	JJ
cord-320417-01l27d99	54	28	occurring	occur	VBG
cord-320417-01l27d99	54	29	SNP	SNP	NNP
cord-320417-01l27d99	54	30	pairs	pair	NNS
cord-320417-01l27d99	54	31	in	in	IN
cord-320417-01l27d99	54	32	the	the	DT
cord-320417-01l27d99	54	33	whole	whole	JJ
cord-320417-01l27d99	54	34	genome	genome	NN
cord-320417-01l27d99	54	35	set	set	NN
cord-320417-01l27d99	54	36	.	.	.
cord-320417-01l27d99	55	1	However	however	RB
cord-320417-01l27d99	55	2	,	,	,
cord-320417-01l27d99	55	3	including	include	VBG
cord-320417-01l27d99	55	4	all	all	DT
cord-320417-01l27d99	55	5	~30,000	~30,000	CD
cord-320417-01l27d99	55	6	nucleotides	nucleotide	NNS
cord-320417-01l27d99	55	7	in	in	IN
cord-320417-01l27d99	55	8	a	a	DT
cord-320417-01l27d99	55	9	full	full	JJ
cord-320417-01l27d99	55	10	-	-	HYPH
cord-320417-01l27d99	55	11	scale	scale	NN
cord-320417-01l27d99	55	12	image	image	NN
cord-320417-01l27d99	55	13	is	be	VBZ
cord-320417-01l27d99	55	14	overwhelming	overwhelming	JJ
cord-320417-01l27d99	55	15	for	for	IN
cord-320417-01l27d99	55	16	normal	normal	JJ
cord-320417-01l27d99	55	17	human	human	JJ
cord-320417-01l27d99	55	18	eyes	eye	NNS
cord-320417-01l27d99	55	19	to	to	TO
cord-320417-01l27d99	55	20	process	process	VB
cord-320417-01l27d99	55	21	.	.	.
cord-320417-01l27d99	56	1	A	a	DT
cord-320417-01l27d99	56	2	simpler	simple	JJR
cord-320417-01l27d99	56	3	format	format	NN
cord-320417-01l27d99	56	4	including	include	VBG
cord-320417-01l27d99	56	5	only	only	RB
cord-320417-01l27d99	56	6	a	a	DT
cord-320417-01l27d99	56	7	selected	select	VBN
cord-320417-01l27d99	56	8	set	set	NN
cord-320417-01l27d99	56	9	of	of	IN
cord-320417-01l27d99	56	10	loci	locus	NNS
cord-320417-01l27d99	56	11	would	would	MD
cord-320417-01l27d99	56	12	be	be	VB
cord-320417-01l27d99	56	13	a	a	DT
cord-320417-01l27d99	56	14	better	well	JJR
cord-320417-01l27d99	56	15	way	way	NN
cord-320417-01l27d99	56	16	to	to	TO
cord-320417-01l27d99	56	17	demonstrate	demonstrate	VB
cord-320417-01l27d99	56	18	the	the	DT
cord-320417-01l27d99	56	19	concept	concept	NN
cord-320417-01l27d99	56	20	.	.	.
cord-320417-01l27d99	57	1	I	-PRON-	PRP
cord-320417-01l27d99	57	2	plotted	plot	VBD
cord-320417-01l27d99	57	3	a	a	DT
cord-320417-01l27d99	57	4	bubble	bubble	NN
cord-320417-01l27d99	57	5	map	map	NN
cord-320417-01l27d99	57	6	with	with	IN
cord-320417-01l27d99	57	7	those	those	DT
cord-320417-01l27d99	57	8	12	12	CD
cord-320417-01l27d99	57	9	clade	clade	NN
cord-320417-01l27d99	57	10	-	-	HYPH
cord-320417-01l27d99	57	11	defining	define	VBG
cord-320417-01l27d99	57	12	SNPs	SNPs	NNPS
cord-320417-01l27d99	57	13	(	(	-LRB-
cord-320417-01l27d99	57	14	including	include	VBG
cord-320417-01l27d99	57	15	241	241	CD
cord-320417-01l27d99	57	16	,	,	,
cord-320417-01l27d99	57	17	3037	3037	CD
cord-320417-01l27d99	57	18	,	,	,
cord-320417-01l27d99	57	19	8782	8782	CD
cord-320417-01l27d99	57	20	,	,	,
cord-320417-01l27d99	57	21	11083	11083	CD
cord-320417-01l27d99	57	22	,	,	,
cord-320417-01l27d99	57	23	14408	14408	CD
cord-320417-01l27d99	57	24	,	,	,
cord-320417-01l27d99	57	25	23403	23403	CD
cord-320417-01l27d99	57	26	,	,	,
cord-320417-01l27d99	57	27	25563	25563	CD
cord-320417-01l27d99	57	28	,	,	,
cord-320417-01l27d99	57	29	26144	26144	CD
cord-320417-01l27d99	57	30	,	,	,
cord-320417-01l27d99	57	31	28144	28144	CD
cord-320417-01l27d99	57	32	,	,	,
cord-320417-01l27d99	57	33	28881	28881	CD
cord-320417-01l27d99	57	34	,	,	,
cord-320417-01l27d99	57	35	28882	28882	CD
cord-320417-01l27d99	57	36	,	,	,
cord-320417-01l27d99	57	37	and	and	CC
cord-320417-01l27d99	57	38	28883	28883	CD
cord-320417-01l27d99	57	39	in	in	IN
cord-320417-01l27d99	57	40	the	the	DT
cord-320417-01l27d99	57	41	order	order	NN
cord-320417-01l27d99	57	42	of	of	IN
cord-320417-01l27d99	57	43	their	-PRON-	PRP$
cord-320417-01l27d99	57	44	nucleotide	nucleotide	JJ
cord-320417-01l27d99	57	45	position	position	NN
cord-320417-01l27d99	57	46	in	in	IN
cord-320417-01l27d99	57	47	the	the	DT
cord-320417-01l27d99	57	48	genome	genome	NN
cord-320417-01l27d99	57	49	and	and	CC
cord-320417-01l27d99	57	50	colored	color	VBN
cord-320417-01l27d99	57	51	according	accord	VBG
cord-320417-01l27d99	57	52	to	to	IN
cord-320417-01l27d99	57	53	their	-PRON-	PRP$
cord-320417-01l27d99	57	54	representing	represent	VBG
cord-320417-01l27d99	57	55	clades	clade	NNS
cord-320417-01l27d99	57	56	)	)	-RRB-
cord-320417-01l27d99	57	57	.	.	.
cord-320417-01l27d99	58	1	The	the	DT
cord-320417-01l27d99	58	2	radius	radius	NN
cord-320417-01l27d99	58	3	of	of	IN
cord-320417-01l27d99	58	4	each	each	DT
cord-320417-01l27d99	58	5	bubble	bubble	NN
cord-320417-01l27d99	58	6	is	be	VBZ
cord-320417-01l27d99	58	7	proportional	proportional	JJ
cord-320417-01l27d99	58	8	to	to	IN
cord-320417-01l27d99	58	9	the	the	DT
cord-320417-01l27d99	58	10	corresponding	correspond	VBG
cord-320417-01l27d99	58	11	population	population	NN
cord-320417-01l27d99	58	12	percentage	percentage	NN
cord-320417-01l27d99	58	13	(	(	-LRB-
cord-320417-01l27d99	58	14	see	see	VB
cord-320417-01l27d99	58	15	Figure	figure	NN
cord-320417-01l27d99	58	16	3	3	CD
cord-320417-01l27d99	58	17	)	)	-RRB-
cord-320417-01l27d99	58	18	.	.	.
cord-320417-01l27d99	59	1	In	in	IN
cord-320417-01l27d99	59	2	this	this	DT
cord-320417-01l27d99	59	3	kind	kind	NN
cord-320417-01l27d99	59	4	of	of	IN
cord-320417-01l27d99	59	5	2D	2D	NNP
cord-320417-01l27d99	59	6	map	map	NNP
cord-320417-01l27d99	59	7	,	,	,
cord-320417-01l27d99	59	8	a	a	DT
cord-320417-01l27d99	59	9	colored	colored	JJ
cord-320417-01l27d99	59	10	bubble	bubble	NN
cord-320417-01l27d99	59	11	at	at	IN
cord-320417-01l27d99	59	12	an	an	DT
cord-320417-01l27d99	59	13	intra	intra	JJ
cord-320417-01l27d99	59	14	-	-	JJ
cord-320417-01l27d99	59	15	clade	clade	JJ
cord-320417-01l27d99	59	16	intersection	intersection	NN
cord-320417-01l27d99	59	17	represents	represent	VBZ
cord-320417-01l27d99	59	18	a	a	DT
cord-320417-01l27d99	59	19	population	population	NN
cord-320417-01l27d99	59	20	of	of	IN
cord-320417-01l27d99	59	21	the	the	DT
cord-320417-01l27d99	59	22	representing	represent	VBG
cord-320417-01l27d99	59	23	clade	clade	NN
cord-320417-01l27d99	59	24	;	;	:
cord-320417-01l27d99	59	25	while	while	IN
cord-320417-01l27d99	59	26	regions	region	NNS
cord-320417-01l27d99	59	27	at	at	IN
cord-320417-01l27d99	59	28	inter	inter	JJ
cord-320417-01l27d99	59	29	-	-	JJ
cord-320417-01l27d99	59	30	clade	clade	JJ
cord-320417-01l27d99	59	31	intersections	intersection	NNS
cord-320417-01l27d99	59	32	are	be	VBP
cord-320417-01l27d99	59	33	normally	normally	RB
cord-320417-01l27d99	59	34	empty	empty	JJ
cord-320417-01l27d99	59	35	,	,	,
cord-320417-01l27d99	59	36	indicating	indicate	VBG
cord-320417-01l27d99	59	37	no	no	DT
cord-320417-01l27d99	59	38	crossover	crossover	NN
cord-320417-01l27d99	59	39	between	between	IN
cord-320417-01l27d99	59	40	distinct	distinct	JJ
cord-320417-01l27d99	59	41	clades	clade	NNS
cord-320417-01l27d99	59	42	.	.	.
cord-320417-01l27d99	60	1	In	in	IN
cord-320417-01l27d99	60	2	Figure	figure	NN
cord-320417-01l27d99	60	3	3	3	CD
cord-320417-01l27d99	60	4	,	,	,
cord-320417-01l27d99	60	5	however	however	RB
cord-320417-01l27d99	60	6	,	,	,
cord-320417-01l27d99	60	7	there	there	EX
cord-320417-01l27d99	60	8	are	be	VBP
cord-320417-01l27d99	60	9	two	two	CD
cord-320417-01l27d99	60	10	(	(	-LRB-
cord-320417-01l27d99	60	11	or	or	CC
cord-320417-01l27d99	60	12	four	four	CD
cord-320417-01l27d99	60	13	,	,	,
cord-320417-01l27d99	60	14	if	if	IN
cord-320417-01l27d99	60	15	accounting	account	VBG
cord-320417-01l27d99	60	16	for	for	IN
cord-320417-01l27d99	60	17	the	the	DT
cord-320417-01l27d99	60	18	diagonal	diagonal	JJ
cord-320417-01l27d99	60	19	symmetry	symmetry	NN
cord-320417-01l27d99	60	20	)	)	-RRB-
cord-320417-01l27d99	60	21	regions	region	NNS
cord-320417-01l27d99	60	22	belonging	belong	VBG
cord-320417-01l27d99	60	23	to	to	IN
cord-320417-01l27d99	60	24	two	two	CD
cord-320417-01l27d99	60	25	pairs	pair	NNS
cord-320417-01l27d99	60	26	of	of	IN
cord-320417-01l27d99	60	27	nucleotides	nucleotide	NNS
cord-320417-01l27d99	60	28	at	at	IN
cord-320417-01l27d99	60	29	(	(	-LRB-
cord-320417-01l27d99	60	30	3037	3037	CD
cord-320417-01l27d99	60	31	,	,	,
cord-320417-01l27d99	60	32	8782	8782	CD
cord-320417-01l27d99	60	33	)	)	-RRB-
cord-320417-01l27d99	60	34	and	and	CC
cord-320417-01l27d99	60	35	(	(	-LRB-
cord-320417-01l27d99	60	36	3037	3037	CD
cord-320417-01l27d99	60	37	,	,	,
cord-320417-01l27d99	60	38	28144	28144	CD
cord-320417-01l27d99	60	39	)	)	-RRB-
cord-320417-01l27d99	60	40	that	that	WDT
cord-320417-01l27d99	60	41	are	be	VBP
cord-320417-01l27d99	60	42	not	not	RB
cord-320417-01l27d99	60	43	empty	empty	JJ
cord-320417-01l27d99	60	44	but	but	CC
cord-320417-01l27d99	60	45	have	have	VBP
cord-320417-01l27d99	60	46	small	small	JJ
cord-320417-01l27d99	60	47	black	black	JJ
cord-320417-01l27d99	60	48	dots	dot	NNS
cord-320417-01l27d99	60	49	.	.	.
cord-320417-01l27d99	61	1	The	the	DT
cord-320417-01l27d99	61	2	locus	locus	NN
cord-320417-01l27d99	61	3	of	of	IN
cord-320417-01l27d99	61	4	3037	3037	CD
cord-320417-01l27d99	61	5	belongs	belong	VBZ
cord-320417-01l27d99	61	6	to	to	IN
cord-320417-01l27d99	61	7	the	the	DT
cord-320417-01l27d99	61	8	G	g	NN
cord-320417-01l27d99	61	9	clade	clade	NN
cord-320417-01l27d99	61	10	and	and	CC
cord-320417-01l27d99	61	11	both	both	DT
cord-320417-01l27d99	61	12	loci	locus	NNS
cord-320417-01l27d99	61	13	of	of	IN
cord-320417-01l27d99	61	14	8782	8782	CD
cord-320417-01l27d99	61	15	and	and	CC
cord-320417-01l27d99	61	16	28144	28144	CD
cord-320417-01l27d99	61	17	belong	belong	VBP
cord-320417-01l27d99	61	18	to	to	IN
cord-320417-01l27d99	61	19	the	the	DT
cord-320417-01l27d99	61	20	S	S	NNP
cord-320417-01l27d99	61	21	clade	clade	NN
cord-320417-01l27d99	61	22	.	.	.
cord-320417-01l27d99	62	1	These	these	DT
cord-320417-01l27d99	62	2	inter	inter	JJ
cord-320417-01l27d99	62	3	-	-	JJ
cord-320417-01l27d99	62	4	clade	clade	JJ
cord-320417-01l27d99	62	5	co	co	NN
cord-320417-01l27d99	62	6	-	-	JJ
cord-320417-01l27d99	62	7	occurring	occur	VBG
cord-320417-01l27d99	62	8	SNP	SNP	NNP
cord-320417-01l27d99	62	9	pairs	pair	NNS
cord-320417-01l27d99	62	10	are	be	VBP
cord-320417-01l27d99	62	11	found	find	VBN
cord-320417-01l27d99	62	12	in	in	IN
cord-320417-01l27d99	62	13	two	two	CD
cord-320417-01l27d99	62	14	lineages	lineage	NNS
cord-320417-01l27d99	62	15	(	(	-LRB-
cord-320417-01l27d99	62	16	MC2254592	MC2254592	NNP
cord-320417-01l27d99	62	17	and	and	CC
cord-320417-01l27d99	62	18	MC2258576	MC2258576	NNP
cord-320417-01l27d99	62	19	)	)	-RRB-
cord-320417-01l27d99	62	20	that	that	WDT
cord-320417-01l27d99	62	21	were	be	VBD
cord-320417-01l27d99	62	22	previously	previously	RB
cord-320417-01l27d99	62	23	highlighted	highlight	VBN
cord-320417-01l27d99	62	24	in	in	IN
cord-320417-01l27d99	62	25	the	the	DT
cord-320417-01l27d99	62	26	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	62	27	tree	tree	NN
cord-320417-01l27d99	62	28	of	of	IN
cord-320417-01l27d99	62	29	Figure	figure	NN
cord-320417-01l27d99	62	30	1	1	CD
cord-320417-01l27d99	62	31	.	.	.
cord-320417-01l27d99	63	1	There	there	EX
cord-320417-01l27d99	63	2	are	be	VBP
cord-320417-01l27d99	63	3	two	two	CD
cord-320417-01l27d99	63	4	possibilities	possibility	NNS
cord-320417-01l27d99	63	5	for	for	IN
cord-320417-01l27d99	63	6	inter	inter	JJ
cord-320417-01l27d99	63	7	-	-	JJ
cord-320417-01l27d99	63	8	clade	clade	JJ
cord-320417-01l27d99	63	9	crossover	crossover	NN
cord-320417-01l27d99	63	10	events	event	NNS
cord-320417-01l27d99	63	11	:	:	:
cord-320417-01l27d99	63	12	1	1	LS
cord-320417-01l27d99	63	13	)	)	-RRB-
cord-320417-01l27d99	63	14	a	a	FW
cord-320417-01l27d99	63	15	de	de	FW
cord-320417-01l27d99	63	16	novo	novo	NNP
cord-320417-01l27d99	63	17	mutation	mutation	NN
cord-320417-01l27d99	63	18	;	;	:
cord-320417-01l27d99	63	19	2	2	LS
cord-320417-01l27d99	63	20	)	)	-RRB-
cord-320417-01l27d99	63	21	homologous	homologous	JJ
cord-320417-01l27d99	63	22	genetic	genetic	JJ
cord-320417-01l27d99	63	23	recombination	recombination	NN
cord-320417-01l27d99	63	24	.	.	.
cord-320417-01l27d99	64	1	These	these	DT
cord-320417-01l27d99	64	2	two	two	CD
cord-320417-01l27d99	64	3	lineages	lineage	NNS
cord-320417-01l27d99	64	4	both	both	DT
cord-320417-01l27d99	64	5	have	have	VBP
cord-320417-01l27d99	64	6	a	a	DT
cord-320417-01l27d99	64	7	total	total	NN
cord-320417-01l27d99	64	8	of	of	IN
cord-320417-01l27d99	64	9	eight	eight	CD
cord-320417-01l27d99	64	10	SNPs	snp	NNS
cord-320417-01l27d99	64	11	(	(	-LRB-
cord-320417-01l27d99	64	12	for	for	IN
cord-320417-01l27d99	64	13	MC2254592	mc2254592	NN
cord-320417-01l27d99	64	14	:	:	:
cord-320417-01l27d99	64	15	2078	2078	CD
cord-320417-01l27d99	64	16	,	,	,
cord-320417-01l27d99	64	17	3037	3037	CD
cord-320417-01l27d99	64	18	,	,	,
cord-320417-01l27d99	64	19	8782	8782	CD
cord-320417-01l27d99	64	20	,	,	,
cord-320417-01l27d99	64	21	19684	19684	CD
cord-320417-01l27d99	64	22	,	,	,
cord-320417-01l27d99	64	23	24043	24043	CD
cord-320417-01l27d99	64	24	,	,	,
cord-320417-01l27d99	64	25	28077	28077	CD
cord-320417-01l27d99	64	26	,	,	,
cord-320417-01l27d99	64	27	28144	28144	CD
cord-320417-01l27d99	64	28	,	,	,
cord-320417-01l27d99	64	29	28849	28849	CD
cord-320417-01l27d99	64	30	;	;	:
cord-320417-01l27d99	64	31	for	for	IN
cord-320417-01l27d99	64	32	MC2258576	MC2258576	NNP
cord-320417-01l27d99	64	33	:	:	:
cord-320417-01l27d99	64	34	3037	3037	CD
cord-320417-01l27d99	64	35	,	,	,
cord-320417-01l27d99	64	36	3177	3177	CD
cord-320417-01l27d99	64	37	,	,	,
cord-320417-01l27d99	64	38	8782	8782	CD
cord-320417-01l27d99	64	39	,	,	,
cord-320417-01l27d99	64	40	11897	11897	CD
cord-320417-01l27d99	64	41	,	,	,
cord-320417-01l27d99	64	42	19684	19684	CD
cord-320417-01l27d99	64	43	,	,	,
cord-320417-01l27d99	64	44	24034	24034	CD
cord-320417-01l27d99	64	45	,	,	,
cord-320417-01l27d99	64	46	25505	25505	CD
cord-320417-01l27d99	64	47	,	,	,
cord-320417-01l27d99	64	48	28144	28144	CD
cord-320417-01l27d99	64	49	,	,	,
cord-320417-01l27d99	64	50	colored	color	VBN
cord-320417-01l27d99	64	51	according	accord	VBG
cord-320417-01l27d99	64	52	to	to	IN
cord-320417-01l27d99	64	53	their	-PRON-	PRP$
cord-320417-01l27d99	64	54	representative	representative	JJ
cord-320417-01l27d99	64	55	clades	clade	NNS
cord-320417-01l27d99	64	56	)	)	-RRB-
cord-320417-01l27d99	64	57	.	.	.
cord-320417-01l27d99	65	1	According	accord	VBG
cord-320417-01l27d99	65	2	to	to	IN
cord-320417-01l27d99	65	3	the	the	DT
cord-320417-01l27d99	65	4	SNP	SNP	NNP
cord-320417-01l27d99	65	5	profile	profile	NN
cord-320417-01l27d99	65	6	of	of	IN
cord-320417-01l27d99	65	7	the	the	DT
cord-320417-01l27d99	65	8	S	S	NNP
cord-320417-01l27d99	65	9	clade	clade	NN
cord-320417-01l27d99	65	10	shown	show	VBN
cord-320417-01l27d99	65	11	in	in	IN
cord-320417-01l27d99	65	12	Figure	Figure	NNP
cord-320417-01l27d99	65	13	2A	2a	CD
cord-320417-01l27d99	65	14	,	,	,
cord-320417-01l27d99	65	15	the	the	DT
cord-320417-01l27d99	65	16	lineage	lineage	NN
cord-320417-01l27d99	65	17	MC2254592	mc2254592	NN
cord-320417-01l27d99	65	18	has	have	VBZ
cord-320417-01l27d99	65	19	six	six	CD
cord-320417-01l27d99	65	20	high	high	JJ
cord-320417-01l27d99	65	21	-	-	HYPH
cord-320417-01l27d99	65	22	profile	profile	NN
cord-320417-01l27d99	65	23	SNPs	snp	NNS
cord-320417-01l27d99	65	24	characteristic	characteristic	JJ
cord-320417-01l27d99	65	25	to	to	IN
cord-320417-01l27d99	65	26	the	the	DT
cord-320417-01l27d99	65	27	S	S	NNP
cord-320417-01l27d99	65	28	clade	clade	NN
cord-320417-01l27d99	65	29	,	,	.
cord-320417-01l27d99	66	1	while	while	IN
cord-320417-01l27d99	66	2	MC2258576	MC2258576	NNP
cord-320417-01l27d99	66	3	has	have	VBZ
cord-320417-01l27d99	66	4	five	five	CD
cord-320417-01l27d99	66	5	,	,	,
cord-320417-01l27d99	66	6	which	which	WDT
cord-320417-01l27d99	66	7	might	may	MD
cord-320417-01l27d99	66	8	be	be	VB
cord-320417-01l27d99	66	9	the	the	DT
cord-320417-01l27d99	66	10	reason	reason	NN
cord-320417-01l27d99	66	11	why	why	WRB
cord-320417-01l27d99	66	12	the	the	DT
cord-320417-01l27d99	66	13	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	66	14	tree	tree	NN
cord-320417-01l27d99	66	15	includes	include	VBZ
cord-320417-01l27d99	66	16	them	-PRON-	PRP
cord-320417-01l27d99	66	17	both	both	DT
cord-320417-01l27d99	66	18	in	in	IN
cord-320417-01l27d99	66	19	the	the	DT
cord-320417-01l27d99	66	20	S	S	NNP
cord-320417-01l27d99	66	21	clade	clade	NN
cord-320417-01l27d99	66	22	.	.	.
cord-320417-01l27d99	67	1	Other	other	JJ
cord-320417-01l27d99	67	2	than	than	IN
cord-320417-01l27d99	67	3	the	the	DT
cord-320417-01l27d99	67	4	high	high	JJ
cord-320417-01l27d99	67	5	-	-	HYPH
cord-320417-01l27d99	67	6	profile	profile	NN
cord-320417-01l27d99	67	7	SNP	SNP	NNP
cord-320417-01l27d99	67	8	at	at	IN
cord-320417-01l27d99	67	9	3037	3037	CD
cord-320417-01l27d99	67	10	representing	represent	VBG
cord-320417-01l27d99	67	11	the	the	DT
cord-320417-01l27d99	67	12	G	g	NN
cord-320417-01l27d99	67	13	clade	clade	NN
cord-320417-01l27d99	67	14	,	,	,
cord-320417-01l27d99	67	15	there	there	EX
cord-320417-01l27d99	67	16	is	be	VBZ
cord-320417-01l27d99	67	17	only	only	RB
cord-320417-01l27d99	67	18	one	one	CD
cord-320417-01l27d99	67	19	low	low	JJ
cord-320417-01l27d99	67	20	-	-	HYPH
cord-320417-01l27d99	67	21	profile	profile	NN
cord-320417-01l27d99	67	22	mutation	mutation	NN
cord-320417-01l27d99	67	23	in	in	IN
cord-320417-01l27d99	67	24	MC2254592	mc2254592	NN
cord-320417-01l27d99	67	25	and	and	CC
cord-320417-01l27d99	67	26	two	two	CD
cord-320417-01l27d99	67	27	in	in	IN
cord-320417-01l27d99	67	28	MC2258576	MC2258576	NNP
cord-320417-01l27d99	67	29	.	.	.
cord-320417-01l27d99	68	1	The	the	DT
cord-320417-01l27d99	68	2	small	small	JJ
cord-320417-01l27d99	68	3	number	number	NN
cord-320417-01l27d99	68	4	of	of	IN
cord-320417-01l27d99	68	5	low	low	JJ
cord-320417-01l27d99	68	6	-	-	HYPH
cord-320417-01l27d99	68	7	profile	profile	NN
cord-320417-01l27d99	68	8	SNPs	snp	NNS
cord-320417-01l27d99	68	9	found	find	VBN
cord-320417-01l27d99	68	10	in	in	IN
cord-320417-01l27d99	68	11	both	both	DT
cord-320417-01l27d99	68	12	lineages	lineage	NNS
cord-320417-01l27d99	68	13	suggests	suggest	VBZ
cord-320417-01l27d99	68	14	that	that	IN
cord-320417-01l27d99	68	15	the	the	DT
cord-320417-01l27d99	68	16	possibility	possibility	NN
cord-320417-01l27d99	68	17	of	of	IN
cord-320417-01l27d99	68	18	a	a	DT
cord-320417-01l27d99	68	19	de	de	FW
cord-320417-01l27d99	68	20	novo	novo	NNP
cord-320417-01l27d99	68	21	mutation	mutation	NN
cord-320417-01l27d99	68	22	causing	cause	VBG
cord-320417-01l27d99	68	23	the	the	DT
cord-320417-01l27d99	68	24	high	high	JJ
cord-320417-01l27d99	68	25	-	-	HYPH
cord-320417-01l27d99	68	26	profile	profile	NN
cord-320417-01l27d99	68	27	SNP	SNP	NNP
cord-320417-01l27d99	68	28	at	at	IN
cord-320417-01l27d99	68	29	3037	3037	CD
cord-320417-01l27d99	68	30	to	to	TO
cord-320417-01l27d99	68	31	occur	occur	VB
cord-320417-01l27d99	68	32	in	in	IN
cord-320417-01l27d99	68	33	an	an	DT
cord-320417-01l27d99	68	34	S	s	NN
cord-320417-01l27d99	68	35	-	-	HYPH
cord-320417-01l27d99	68	36	clade	clade	NN
cord-320417-01l27d99	68	37	lineage	lineage	NN
cord-320417-01l27d99	68	38	is	be	VBZ
cord-320417-01l27d99	68	39	very	very	RB
cord-320417-01l27d99	68	40	low	low	JJ
cord-320417-01l27d99	68	41	.	.	.
cord-320417-01l27d99	69	1	Homologous	homologous	JJ
cord-320417-01l27d99	69	2	genetic	genetic	JJ
cord-320417-01l27d99	69	3	recombination	recombination	NN
cord-320417-01l27d99	69	4	,	,	,
cord-320417-01l27d99	69	5	on	on	IN
cord-320417-01l27d99	69	6	the	the	DT
cord-320417-01l27d99	69	7	other	other	JJ
cord-320417-01l27d99	69	8	hand	hand	NN
cord-320417-01l27d99	69	9	,	,	,
cord-320417-01l27d99	69	10	is	be	VBZ
cord-320417-01l27d99	69	11	a	a	DT
cord-320417-01l27d99	69	12	major	major	JJ
cord-320417-01l27d99	69	13	evolutionary	evolutionary	JJ
cord-320417-01l27d99	69	14	driving	driving	NN
cord-320417-01l27d99	69	15	forces	force	NNS
cord-320417-01l27d99	69	16	found	find	VBN
cord-320417-01l27d99	69	17	in	in	IN
cord-320417-01l27d99	69	18	all	all	DT
cord-320417-01l27d99	69	19	kingdoms	kingdom	NNS
cord-320417-01l27d99	69	20	of	of	IN
cord-320417-01l27d99	69	21	living	live	VBG
cord-320417-01l27d99	69	22	organisms	organism	NNS
cord-320417-01l27d99	69	23	.	.	.
cord-320417-01l27d99	70	1	Viral	viral	JJ
cord-320417-01l27d99	70	2	homologous	homologous	JJ
cord-320417-01l27d99	70	3	recombination	recombination	NN
cord-320417-01l27d99	70	4	,	,	,
cord-320417-01l27d99	70	5	discovered	discover	VBN
cord-320417-01l27d99	70	6	in	in	IN
cord-320417-01l27d99	70	7	several	several	JJ
cord-320417-01l27d99	70	8	other	other	JJ
cord-320417-01l27d99	70	9	RNA	RNA	NNP
cord-320417-01l27d99	70	10	viruses	virus	NNS
cord-320417-01l27d99	70	11	,	,	,
cord-320417-01l27d99	70	12	has	have	VBZ
cord-320417-01l27d99	70	13	the	the	DT
cord-320417-01l27d99	70	14	potential	potential	NN
cord-320417-01l27d99	70	15	to	to	TO
cord-320417-01l27d99	70	16	create	create	VB
cord-320417-01l27d99	70	17	a	a	DT
cord-320417-01l27d99	70	18	novel	novel	JJ
cord-320417-01l27d99	70	19	strain	strain	NN
cord-320417-01l27d99	70	20	with	with	IN
cord-320417-01l27d99	70	21	enhanced	enhanced	JJ
cord-320417-01l27d99	70	22	virulence	virulence	NN
cord-320417-01l27d99	70	23	[	[	-LRB-
cord-320417-01l27d99	70	24	8	8	CD
cord-320417-01l27d99	70	25	]	]	-RRB-
cord-320417-01l27d99	70	26	[	[	-LRB-
cord-320417-01l27d99	70	27	9	9	CD
cord-320417-01l27d99	70	28	]	]	-RRB-
cord-320417-01l27d99	70	29	[	[	-LRB-
cord-320417-01l27d99	70	30	10	10	CD
cord-320417-01l27d99	70	31	]	]	-RRB-
cord-320417-01l27d99	70	32	[	[	-LRB-
cord-320417-01l27d99	70	33	11	11	CD
cord-320417-01l27d99	70	34	]	]	-RRB-
cord-320417-01l27d99	70	35	.	.	.
cord-320417-01l27d99	71	1	For	for	IN
cord-320417-01l27d99	71	2	the	the	DT
cord-320417-01l27d99	71	3	SARS	SARS	NNP
cord-320417-01l27d99	71	4	-	-	HYPH
cord-320417-01l27d99	71	5	CoV-2	CoV-2	NNP
cord-320417-01l27d99	71	6	virus	virus	NN
cord-320417-01l27d99	71	7	,	,	,
cord-320417-01l27d99	71	8	several	several	JJ
cord-320417-01l27d99	71	9	accounts	account	NNS
cord-320417-01l27d99	71	10	of	of	IN
cord-320417-01l27d99	71	11	recombination	recombination	NN
cord-320417-01l27d99	71	12	events	event	NNS
cord-320417-01l27d99	71	13	have	have	VBP
cord-320417-01l27d99	71	14	been	be	VBN
cord-320417-01l27d99	71	15	reported	report	VBN
cord-320417-01l27d99	71	16	12	12	CD
cord-320417-01l27d99	71	17	-	-	SYM
cord-320417-01l27d99	71	18	14	14	CD
cord-320417-01l27d99	71	19	.	.	.
cord-320417-01l27d99	72	1	There	there	EX
cord-320417-01l27d99	72	2	are	be	VBP
cord-320417-01l27d99	72	3	several	several	JJ
cord-320417-01l27d99	72	4	tools	tool	NNS
cord-320417-01l27d99	72	5	,	,	,
cord-320417-01l27d99	72	6	including	include	VBG
cord-320417-01l27d99	72	7	Simplot	Simplot	NNP
cord-320417-01l27d99	72	8	15	15	CD
cord-320417-01l27d99	72	9	,	,	,
cord-320417-01l27d99	72	10	RDP4	RDP4	NNP
cord-320417-01l27d99	72	11	16	16	CD
cord-320417-01l27d99	72	12	,	,	,
cord-320417-01l27d99	72	13	and	and	CC
cord-320417-01l27d99	72	14	PhiPack	PhiPack	NNP
cord-320417-01l27d99	72	15	17	17	CD
cord-320417-01l27d99	72	16	,	,	,
cord-320417-01l27d99	72	17	that	that	WDT
cord-320417-01l27d99	72	18	are	be	VBP
cord-320417-01l27d99	72	19	specifically	specifically	RB
cord-320417-01l27d99	72	20	designed	design	VBN
cord-320417-01l27d99	72	21	for	for	IN
cord-320417-01l27d99	72	22	detecting	detect	VBG
cord-320417-01l27d99	72	23	homologous	homologous	JJ
cord-320417-01l27d99	72	24	recombination	recombination	NN
cord-320417-01l27d99	72	25	.	.	.
cord-320417-01l27d99	73	1	But	but	CC
cord-320417-01l27d99	73	2	none	none	NN
cord-320417-01l27d99	73	3	of	of	IN
cord-320417-01l27d99	73	4	these	these	DT
cord-320417-01l27d99	73	5	tools	tool	NNS
cord-320417-01l27d99	73	6	can	can	MD
cord-320417-01l27d99	73	7	detect	detect	VB
cord-320417-01l27d99	73	8	any	any	DT
cord-320417-01l27d99	73	9	possible	possible	JJ
cord-320417-01l27d99	73	10	recombination	recombination	NN
cord-320417-01l27d99	73	11	events	event	NNS
cord-320417-01l27d99	73	12	among	among	IN
cord-320417-01l27d99	73	13	85	85	CD
cord-320417-01l27d99	73	14	genome	genome	NN
cord-320417-01l27d99	73	15	sequences	sequence	NNS
cord-320417-01l27d99	73	16	,	,	,
cord-320417-01l27d99	73	17	possibly	possibly	RB
cord-320417-01l27d99	73	18	due	due	JJ
cord-320417-01l27d99	73	19	to	to	IN
cord-320417-01l27d99	73	20	low	low	JJ
cord-320417-01l27d99	73	21	-	-	HYPH
cord-320417-01l27d99	73	22	frequency	frequency	NN
cord-320417-01l27d99	73	23	events	event	NNS
cord-320417-01l27d99	73	24	with	with	IN
cord-320417-01l27d99	73	25	few	few	JJ
cord-320417-01l27d99	73	26	SNPs	snp	NNS
cord-320417-01l27d99	73	27	.	.	.
cord-320417-01l27d99	74	1	For	for	IN
cord-320417-01l27d99	74	2	example	example	NN
cord-320417-01l27d99	74	3	,	,	,
cord-320417-01l27d99	74	4	the	the	DT
cord-320417-01l27d99	74	5	PhiPack	PhiPack	NNP
cord-320417-01l27d99	74	6	was	be	VBD
cord-320417-01l27d99	74	7	designed	design	VBN
cord-320417-01l27d99	74	8	to	to	TO
cord-320417-01l27d99	74	9	work	work	VB
cord-320417-01l27d99	74	10	for	for	IN
cord-320417-01l27d99	74	11	low	low	JJ
cord-320417-01l27d99	74	12	-	-	HYPH
cord-320417-01l27d99	74	13	divergence	divergence	NN
cord-320417-01l27d99	74	14	genomes	genome	NNS
cord-320417-01l27d99	74	15	,	,	,
cord-320417-01l27d99	74	16	it	-PRON-	PRP
cord-320417-01l27d99	74	17	still	still	RB
cord-320417-01l27d99	74	18	requires	require	VBZ
cord-320417-01l27d99	74	19	1~5	1~5	CD
cord-320417-01l27d99	74	20	%	%	NN
cord-320417-01l27d99	74	21	of	of	IN
cord-320417-01l27d99	74	22	variants	variant	NNS
cord-320417-01l27d99	74	23	to	to	TO
cord-320417-01l27d99	74	24	perform	perform	VB
cord-320417-01l27d99	74	25	statistical	statistical	JJ
cord-320417-01l27d99	74	26	analysis	analysis	NN
cord-320417-01l27d99	74	27	.	.	.
cord-320417-01l27d99	75	1	Because	because	IN
cord-320417-01l27d99	75	2	of	of	IN
cord-320417-01l27d99	75	3	the	the	DT
cord-320417-01l27d99	75	4	relatively	relatively	RB
cord-320417-01l27d99	75	5	short	short	JJ
cord-320417-01l27d99	75	6	period	period	NN
cord-320417-01l27d99	75	7	into	into	IN
cord-320417-01l27d99	75	8	COVID-19	covid-19	JJ
cord-320417-01l27d99	75	9	pandemic	pandemic	NN
cord-320417-01l27d99	75	10	,	,	,
cord-320417-01l27d99	75	11	most	most	JJS
cord-320417-01l27d99	75	12	viral	viral	JJ
cord-320417-01l27d99	75	13	lineages	lineage	NNS
cord-320417-01l27d99	75	14	have	have	VBP
cord-320417-01l27d99	75	15	less	less	JJR
cord-320417-01l27d99	75	16	than	than	IN
cord-320417-01l27d99	75	17	20	20	CD
cord-320417-01l27d99	75	18	SNPs	snp	NNS
cord-320417-01l27d99	75	19	,	,	,
cord-320417-01l27d99	75	20	which	which	WDT
cord-320417-01l27d99	75	21	is	be	VBZ
cord-320417-01l27d99	75	22	at	at	IN
cord-320417-01l27d99	75	23	only	only	RB
cord-320417-01l27d99	75	24	0.067	0.067	CD
cord-320417-01l27d99	75	25	%	%	NN
cord-320417-01l27d99	75	26	of	of	IN
cord-320417-01l27d99	75	27	variant	variant	JJ
cord-320417-01l27d99	75	28	percentage	percentage	NN
cord-320417-01l27d99	75	29	.	.	.
cord-320417-01l27d99	76	1	This	this	DT
cord-320417-01l27d99	76	2	is	be	VBZ
cord-320417-01l27d99	76	3	why	why	WRB
cord-320417-01l27d99	76	4	all	all	DT
cord-320417-01l27d99	76	5	previously	previously	RB
cord-320417-01l27d99	76	6	reported	report	VBN
cord-320417-01l27d99	76	7	recombination	recombination	NN
cord-320417-01l27d99	76	8	events	event	NNS
cord-320417-01l27d99	76	9	of	of	IN
cord-320417-01l27d99	76	10	SARS	SARS	NNP
cord-320417-01l27d99	76	11	-	-	HYPH
cord-320417-01l27d99	76	12	Cov-2	Cov-2	NNP
cord-320417-01l27d99	76	13	have	have	VBP
cord-320417-01l27d99	76	14	relied	rely	VBN
cord-320417-01l27d99	76	15	on	on	IN
cord-320417-01l27d99	76	16	clade	clade	NN
cord-320417-01l27d99	76	17	-	-	HYPH
cord-320417-01l27d99	76	18	defining	define	VBG
cord-320417-01l27d99	76	19	SNPs	snp	NNS
cord-320417-01l27d99	76	20	.	.	.
cord-320417-01l27d99	77	1	The	the	DT
cord-320417-01l27d99	77	2	2D	2d	NN
cord-320417-01l27d99	77	3	co	co	NN
cord-320417-01l27d99	77	4	-	-	JJ
cord-320417-01l27d99	77	5	occurring	occurring	JJ
cord-320417-01l27d99	77	6	variant	variant	NN
cord-320417-01l27d99	77	7	mapping	mapping	NN
cord-320417-01l27d99	77	8	is	be	VBZ
cord-320417-01l27d99	77	9	a	a	DT
cord-320417-01l27d99	77	10	simple	simple	JJ
cord-320417-01l27d99	77	11	way	way	NN
cord-320417-01l27d99	77	12	to	to	TO
cord-320417-01l27d99	77	13	display	display	VB
cord-320417-01l27d99	77	14	inter	inter	JJ
cord-320417-01l27d99	77	15	-	-	JJ
cord-320417-01l27d99	77	16	clade	clade	JJ
cord-320417-01l27d99	77	17	hybrid	hybrid	JJ
cord-320417-01l27d99	77	18	lineages	lineage	NNS
cord-320417-01l27d99	77	19	,	,	,
cord-320417-01l27d99	77	20	and	and	CC
cord-320417-01l27d99	77	21	it	-PRON-	PRP
cord-320417-01l27d99	77	22	can	can	MD
cord-320417-01l27d99	77	23	be	be	VB
cord-320417-01l27d99	77	24	used	use	VBN
cord-320417-01l27d99	77	25	to	to	TO
cord-320417-01l27d99	77	26	directly	directly	RB
cord-320417-01l27d99	77	27	compare	compare	VB
cord-320417-01l27d99	77	28	distributions	distribution	NNS
cord-320417-01l27d99	77	29	of	of	IN
cord-320417-01l27d99	77	30	populations	population	NNS
cord-320417-01l27d99	77	31	for	for	IN
cord-320417-01l27d99	77	32	intra	intra	NNP
cord-320417-01l27d99	77	33	-	-	:
cord-320417-01l27d99	77	34	and	and	CC
cord-320417-01l27d99	77	35	inter	inter	JJ
cord-320417-01l27d99	77	36	-	-	NN
cord-320417-01l27d99	77	37	clade	clade	NN
cord-320417-01l27d99	77	38	from	from	IN
cord-320417-01l27d99	77	39	different	different	JJ
cord-320417-01l27d99	77	40	geographic	geographic	JJ
cord-320417-01l27d99	77	41	locations	location	NNS
cord-320417-01l27d99	77	42	or	or	CC
cord-320417-01l27d99	77	43	the	the	DT
cord-320417-01l27d99	77	44	same	same	JJ
cord-320417-01l27d99	77	45	location	location	NN
cord-320417-01l27d99	77	46	but	but	CC
cord-320417-01l27d99	77	47	at	at	IN
cord-320417-01l27d99	77	48	a	a	DT
cord-320417-01l27d99	77	49	different	different	JJ
cord-320417-01l27d99	77	50	time	time	NN
cord-320417-01l27d99	77	51	point	point	NN
cord-320417-01l27d99	77	52	.	.	.
cord-320417-01l27d99	78	1	Therefore	therefore	RB
cord-320417-01l27d99	78	2	,	,	,
cord-320417-01l27d99	78	3	it	-PRON-	PRP
cord-320417-01l27d99	78	4	is	be	VBZ
cord-320417-01l27d99	78	5	worth	worth	JJ
cord-320417-01l27d99	78	6	to	to	TO
cord-320417-01l27d99	78	7	examine	examine	VB
cord-320417-01l27d99	78	8	genome	genome	NN
cord-320417-01l27d99	78	9	sequences	sequence	NNS
cord-320417-01l27d99	78	10	from	from	IN
cord-320417-01l27d99	78	11	around	around	IN
cord-320417-01l27d99	78	12	the	the	DT
cord-320417-01l27d99	78	13	world	world	NN
cord-320417-01l27d99	78	14	that	that	WDT
cord-320417-01l27d99	78	15	have	have	VBP
cord-320417-01l27d99	78	16	been	be	VBN
cord-320417-01l27d99	78	17	deposited	deposit	VBN
cord-320417-01l27d99	78	18	into	into	IN
cord-320417-01l27d99	78	19	public	public	JJ
cord-320417-01l27d99	78	20	domains	domain	NNS
cord-320417-01l27d99	78	21	.	.	.
cord-320417-01l27d99	79	1	3	3	LS
cord-320417-01l27d99	79	2	.	.	.
cord-320417-01l27d99	80	1	The	the	DT
cord-320417-01l27d99	80	2	big	big	JJ
cord-320417-01l27d99	80	3	picture	picture	NN
cord-320417-01l27d99	80	4	of	of	IN
cord-320417-01l27d99	80	5	homologous	homologous	JJ
cord-320417-01l27d99	80	6	recombination	recombination	NN
cord-320417-01l27d99	80	7	.	.	.
cord-320417-01l27d99	81	1	I	-PRON-	PRP
cord-320417-01l27d99	81	2	downloaded	download	VBD
cord-320417-01l27d99	81	3	~18,000	~18,000	NNP
cord-320417-01l27d99	81	4	SARS	SARS	NNP
cord-320417-01l27d99	81	5	-	-	HYPH
cord-320417-01l27d99	81	6	CoV-2	CoV-2	NNP
cord-320417-01l27d99	81	7	genome	genome	NN
cord-320417-01l27d99	81	8	sequences	sequence	NNS
cord-320417-01l27d99	81	9	from	from	IN
cord-320417-01l27d99	81	10	NCBI	NCBI	NNP
cord-320417-01l27d99	81	11	(	(	-LRB-
cord-320417-01l27d99	81	12	on	on	IN
cord-320417-01l27d99	81	13	September	September	NNP
cord-320417-01l27d99	81	14	2	2	CD
cord-320417-01l27d99	81	15	nd	nd	NNP
cord-320417-01l27d99	81	16	)	)	-RRB-
cord-320417-01l27d99	81	17	and	and	CC
cord-320417-01l27d99	81	18	used	use	VBD
cord-320417-01l27d99	81	19	the	the	DT
cord-320417-01l27d99	81	20	same	same	JJ
cord-320417-01l27d99	81	21	criterion	criterion	NN
cord-320417-01l27d99	81	22	as	as	IN
cord-320417-01l27d99	81	23	before	before	RB
cord-320417-01l27d99	81	24	to	to	TO
cord-320417-01l27d99	81	25	search	search	VB
cord-320417-01l27d99	81	26	for	for	IN
cord-320417-01l27d99	81	27	inter	inter	JJ
cord-320417-01l27d99	81	28	-	-	JJ
cord-320417-01l27d99	81	29	clade	clade	JJ
cord-320417-01l27d99	81	30	co	co	NN
cord-320417-01l27d99	81	31	-	-	JJ
cord-320417-01l27d99	81	32	occurring	occur	VBG
cord-320417-01l27d99	81	33	SNP	SNP	NNP
cord-320417-01l27d99	81	34	pairs	pair	NNS
cord-320417-01l27d99	81	35	(	(	-LRB-
cord-320417-01l27d99	81	36	see	see	VB
cord-320417-01l27d99	81	37	method	method	NN
cord-320417-01l27d99	81	38	for	for	IN
cord-320417-01l27d99	81	39	details	detail	NNS
cord-320417-01l27d99	81	40	)	)	-RRB-
cord-320417-01l27d99	81	41	.	.	.
cord-320417-01l27d99	82	1	I	-PRON-	PRP
cord-320417-01l27d99	82	2	first	first	RB
cord-320417-01l27d99	82	3	looked	look	VBD
cord-320417-01l27d99	82	4	at	at	IN
cord-320417-01l27d99	82	5	domestic	domestic	JJ
cord-320417-01l27d99	82	6	regions	region	NNS
cord-320417-01l27d99	82	7	in	in	IN
cord-320417-01l27d99	82	8	the	the	DT
cord-320417-01l27d99	82	9	US	US	NNP
cord-320417-01l27d99	82	10	and	and	CC
cord-320417-01l27d99	82	11	focused	focus	VBD
cord-320417-01l27d99	82	12	on	on	IN
cord-320417-01l27d99	82	13	four	four	CD
cord-320417-01l27d99	82	14	states	state	NNS
cord-320417-01l27d99	82	15	,	,	,
cord-320417-01l27d99	82	16	including	include	VBG
cord-320417-01l27d99	82	17	New	New	NNP
cord-320417-01l27d99	82	18	York	York	NNP
cord-320417-01l27d99	82	19	,	,	,
cord-320417-01l27d99	82	20	Minnesota	Minnesota	NNP
cord-320417-01l27d99	82	21	,	,	,
cord-320417-01l27d99	82	22	California	California	NNP
cord-320417-01l27d99	82	23	,	,	,
cord-320417-01l27d99	82	24	and	and	CC
cord-320417-01l27d99	82	25	Washington	Washington	NNP
cord-320417-01l27d99	82	26	,	,	,
cord-320417-01l27d99	82	27	that	that	WDT
cord-320417-01l27d99	82	28	represent	represent	VBP
cord-320417-01l27d99	82	29	different	different	JJ
cord-320417-01l27d99	82	30	geographic	geographic	JJ
cord-320417-01l27d99	82	31	regions	region	NNS
cord-320417-01l27d99	82	32	(	(	-LRB-
cord-320417-01l27d99	82	33	see	see	VB
cord-320417-01l27d99	82	34	Figure	Figure	NNP
cord-320417-01l27d99	82	35	4	4	CD
cord-320417-01l27d99	82	36	)	)	-RRB-
cord-320417-01l27d99	82	37	.	.	.
cord-320417-01l27d99	83	1	The	the	DT
cord-320417-01l27d99	83	2	Minnesota	Minnesota	NNP
cord-320417-01l27d99	83	3	genome	genome	NN
cord-320417-01l27d99	83	4	collection	collection	NN
cord-320417-01l27d99	83	5	had	have	VBD
cord-320417-01l27d99	83	6	124	124	CD
cord-320417-01l27d99	83	7	sequences	sequence	NNS
cord-320417-01l27d99	83	8	at	at	IN
cord-320417-01l27d99	83	9	the	the	DT
cord-320417-01l27d99	83	10	time	time	NN
cord-320417-01l27d99	83	11	of	of	IN
cord-320417-01l27d99	83	12	this	this	DT
cord-320417-01l27d99	83	13	study	study	NN
cord-320417-01l27d99	83	14	.	.	.
cord-320417-01l27d99	84	1	Its	-PRON-	PRP$
cord-320417-01l27d99	84	2	2D	2d	JJ
cord-320417-01l27d99	84	3	plot	plot	NN
cord-320417-01l27d99	84	4	shows	show	VBZ
cord-320417-01l27d99	84	5	a	a	DT
cord-320417-01l27d99	84	6	pattern	pattern	NN
cord-320417-01l27d99	84	7	similar	similar	JJ
cord-320417-01l27d99	84	8	to	to	IN
cord-320417-01l27d99	84	9	that	that	DT
cord-320417-01l27d99	84	10	in	in	IN
cord-320417-01l27d99	84	11	Figure	figure	NN
cord-320417-01l27d99	84	12	3	3	CD
cord-320417-01l27d99	84	13	(	(	-LRB-
cord-320417-01l27d99	84	14	no	no	RB
cord-320417-01l27d99	84	15	doubt	doubt	RB
cord-320417-01l27d99	84	16	given	give	VBN
cord-320417-01l27d99	84	17	that	that	IN
cord-320417-01l27d99	84	18	Mayo	Mayo	NNP
cord-320417-01l27d99	84	19	Clinic	Clinic	NNP
cord-320417-01l27d99	84	20	Rochester	Rochester	NNP
cord-320417-01l27d99	84	21	is	be	VBZ
cord-320417-01l27d99	84	22	located	locate	VBN
cord-320417-01l27d99	84	23	in	in	IN
cord-320417-01l27d99	84	24	Minnesota	Minnesota	NNP
cord-320417-01l27d99	84	25	)	)	-RRB-
cord-320417-01l27d99	84	26	,	,	,
cord-320417-01l27d99	84	27	which	which	WDT
cord-320417-01l27d99	84	28	is	be	VBZ
cord-320417-01l27d99	84	29	dominated	dominate	VBN
cord-320417-01l27d99	84	30	by	by	IN
cord-320417-01l27d99	84	31	the	the	DT
cord-320417-01l27d99	84	32	S	S	NNP
cord-320417-01l27d99	84	33	and	and	CC
cord-320417-01l27d99	84	34	the	the	DT
cord-320417-01l27d99	84	35	G	g	NN
cord-320417-01l27d99	84	36	clade	clade	NN
cord-320417-01l27d99	84	37	,	,	,
cord-320417-01l27d99	84	38	followed	follow	VBN
cord-320417-01l27d99	84	39	by	by	IN
cord-320417-01l27d99	84	40	a	a	DT
cord-320417-01l27d99	84	41	smaller	small	JJR
cord-320417-01l27d99	84	42	population	population	NN
cord-320417-01l27d99	84	43	of	of	IN
cord-320417-01l27d99	84	44	the	the	DT
cord-320417-01l27d99	84	45	GH	GH	NNP
cord-320417-01l27d99	84	46	clade	clade	NN
cord-320417-01l27d99	84	47	and	and	CC
cord-320417-01l27d99	84	48	an	an	DT
cord-320417-01l27d99	84	49	even	even	RB
cord-320417-01l27d99	84	50	less	less	RBR
cord-320417-01l27d99	84	51	-	-	HYPH
cord-320417-01l27d99	84	52	populous	populous	JJ
cord-320417-01l27d99	84	53	GR	GR	NNP
cord-320417-01l27d99	84	54	clade	clade	NN
cord-320417-01l27d99	84	55	,	,	,
cord-320417-01l27d99	84	56	with	with	IN
cord-320417-01l27d99	84	57	the	the	DT
cord-320417-01l27d99	84	58	V	v	NN
cord-320417-01l27d99	84	59	clade	clade	NN
cord-320417-01l27d99	84	60	as	as	IN
cord-320417-01l27d99	84	61	the	the	DT
cord-320417-01l27d99	84	62	least	least	JJS
cord-320417-01l27d99	84	63	populous	populous	JJ
cord-320417-01l27d99	84	64	.	.	.
cord-320417-01l27d99	85	1	There	there	EX
cord-320417-01l27d99	85	2	are	be	VBP
cord-320417-01l27d99	85	3	also	also	RB
cord-320417-01l27d99	85	4	two	two	CD
cord-320417-01l27d99	85	5	inter	inter	JJ
cord-320417-01l27d99	85	6	-	-	JJ
cord-320417-01l27d99	85	7	clade	clade	JJ
cord-320417-01l27d99	85	8	co	co	NN
cord-320417-01l27d99	85	9	-	-	JJ
cord-320417-01l27d99	85	10	occurring	occur	VBG
cord-320417-01l27d99	85	11	SNP	SNP	NNP
cord-320417-01l27d99	85	12	pairs	pair	NNS
cord-320417-01l27d99	85	13	at	at	IN
cord-320417-01l27d99	85	14	(	(	-LRB-
cord-320417-01l27d99	85	15	8782	8782	CD
cord-320417-01l27d99	85	16	,	,	,
cord-320417-01l27d99	85	17	23403	23403	CD
cord-320417-01l27d99	85	18	)	)	-RRB-
cord-320417-01l27d99	85	19	and	and	CC
cord-320417-01l27d99	85	20	(	(	-LRB-
cord-320417-01l27d99	85	21	28144	28144	CD
cord-320417-01l27d99	85	22	,	,	,
cord-320417-01l27d99	85	23	23403	23403	CD
cord-320417-01l27d99	85	24	)	)	-RRB-
cord-320417-01l27d99	85	25	between	between	IN
cord-320417-01l27d99	85	26	the	the	DT
cord-320417-01l27d99	85	27	S	S	NNP
cord-320417-01l27d99	85	28	and	and	CC
cord-320417-01l27d99	85	29	the	the	DT
cord-320417-01l27d99	85	30	G	g	NN
cord-320417-01l27d99	85	31	clade	clade	NN
cord-320417-01l27d99	85	32	.	.	.
cord-320417-01l27d99	86	1	Both	both	DT
cord-320417-01l27d99	86	2	co	co	NN
cord-320417-01l27d99	86	3	-	-	JJ
cord-320417-01l27d99	86	4	occurring	occur	VBG
cord-320417-01l27d99	86	5	SNP	SNP	NNP
cord-320417-01l27d99	86	6	pairs	pair	NNS
cord-320417-01l27d99	86	7	were	be	VBD
cord-320417-01l27d99	86	8	identified	identify	VBN
cord-320417-01l27d99	86	9	in	in	IN
cord-320417-01l27d99	86	10	the	the	DT
cord-320417-01l27d99	86	11	same	same	JJ
cord-320417-01l27d99	86	12	lineage	lineage	NN
cord-320417-01l27d99	86	13	(	(	-LRB-
cord-320417-01l27d99	86	14	NCBI	NCBI	NNP
cord-320417-01l27d99	86	15	access	access	NN
cord-320417-01l27d99	86	16	ID	ID	NNP
cord-320417-01l27d99	86	17	:	:	:
cord-320417-01l27d99	86	18	MT920018	mt920018	NN
cord-320417-01l27d99	86	19	)	)	-RRB-
cord-320417-01l27d99	86	20	.	.	.
cord-320417-01l27d99	87	1	The	the	DT
cord-320417-01l27d99	87	2	New	New	NNP
cord-320417-01l27d99	87	3	York	York	NNP
cord-320417-01l27d99	87	4	genome	genome	NN
cord-320417-01l27d99	87	5	collection	collection	NN
cord-320417-01l27d99	87	6	had	have	VBD
cord-320417-01l27d99	87	7	285	285	CD
cord-320417-01l27d99	87	8	sequences	sequence	NNS
cord-320417-01l27d99	87	9	,	,	,
cord-320417-01l27d99	87	10	and	and	CC
cord-320417-01l27d99	87	11	its	-PRON-	PRP$
cord-320417-01l27d99	87	12	2D	2d	JJ
cord-320417-01l27d99	87	13	plot	plot	NN
cord-320417-01l27d99	87	14	shows	show	VBZ
cord-320417-01l27d99	87	15	two	two	CD
cord-320417-01l27d99	87	16	equally	equally	RB
cord-320417-01l27d99	87	17	dominant	dominant	JJ
cord-320417-01l27d99	87	18	G	g	NN
cord-320417-01l27d99	87	19	and	and	CC
cord-320417-01l27d99	87	20	GH	GH	NNP
cord-320417-01l27d99	87	21	clades	clade	NNS
cord-320417-01l27d99	87	22	,	,	,
cord-320417-01l27d99	87	23	followed	follow	VBN
cord-320417-01l27d99	87	24	by	by	IN
cord-320417-01l27d99	87	25	V	V	NNP
cord-320417-01l27d99	87	26	,	,	,
cord-320417-01l27d99	87	27	S	S	NNP
cord-320417-01l27d99	87	28	,	,	,
cord-320417-01l27d99	87	29	and	and	CC
cord-320417-01l27d99	87	30	GR	GR	NNP
cord-320417-01l27d99	87	31	clades	clade	NNS
cord-320417-01l27d99	87	32	.	.	.
cord-320417-01l27d99	88	1	Inter	Inter	NNP
cord-320417-01l27d99	88	2	-	-	HYPH
cord-320417-01l27d99	88	3	clade	clade	JJ
cord-320417-01l27d99	88	4	co	co	NN
cord-320417-01l27d99	88	5	-	-	JJ
cord-320417-01l27d99	88	6	occurring	occur	VBG
cord-320417-01l27d99	88	7	SNP	SNP	NNP
cord-320417-01l27d99	88	8	pairs	pair	NNS
cord-320417-01l27d99	88	9	are	be	VBP
cord-320417-01l27d99	88	10	found	find	VBN
cord-320417-01l27d99	88	11	between	between	IN
cord-320417-01l27d99	88	12	the	the	DT
cord-320417-01l27d99	88	13	locus	locus	NN
cord-320417-01l27d99	88	14	at	at	IN
cord-320417-01l27d99	88	15	11083	11083	CD
cord-320417-01l27d99	88	16	of	of	IN
cord-320417-01l27d99	88	17	the	the	DT
cord-320417-01l27d99	88	18	V	v	NN
cord-320417-01l27d99	88	19	clade	clade	NN
cord-320417-01l27d99	88	20	and	and	CC
cord-320417-01l27d99	88	21	all	all	DT
cord-320417-01l27d99	88	22	other	other	JJ
cord-320417-01l27d99	88	23	representative	representative	JJ
cord-320417-01l27d99	88	24	loci	locus	NNS
cord-320417-01l27d99	88	25	of	of	IN
cord-320417-01l27d99	88	26	the	the	DT
cord-320417-01l27d99	88	27	G	G	NNP
cord-320417-01l27d99	88	28	and	and	CC
cord-320417-01l27d99	88	29	GH	GH	NNP
cord-320417-01l27d99	88	30	clades	clade	NNS
cord-320417-01l27d99	88	31	.	.	.
cord-320417-01l27d99	89	1	These	these	DT
cord-320417-01l27d99	89	2	co	co	JJ
cord-320417-01l27d99	89	3	-	-	JJ
cord-320417-01l27d99	89	4	occurring	occurring	JJ
cord-320417-01l27d99	89	5	SNP	SNP	NNP
cord-320417-01l27d99	89	6	pairs	pair	NNS
cord-320417-01l27d99	89	7	were	be	VBD
cord-320417-01l27d99	89	8	identified	identify	VBN
cord-320417-01l27d99	89	9	in	in	IN
cord-320417-01l27d99	89	10	two	two	CD
cord-320417-01l27d99	89	11	lineages	lineage	NNS
cord-320417-01l27d99	89	12	(	(	-LRB-
cord-320417-01l27d99	89	13	NCBI	NCBI	NNP
cord-320417-01l27d99	89	14	access	access	NN
cord-320417-01l27d99	89	15	ID	ID	NNP
cord-320417-01l27d99	89	16	:	:	:
cord-320417-01l27d99	89	17	MT370869	mt370869	XX
cord-320417-01l27d99	89	18	,	,	,
cord-320417-01l27d99	89	19	MT370986	MT370986	NNP
cord-320417-01l27d99	89	20	)	)	-RRB-
cord-320417-01l27d99	89	21	.	.	.
cord-320417-01l27d99	90	1	The	the	DT
cord-320417-01l27d99	90	2	California	California	NNP
cord-320417-01l27d99	90	3	genome	genome	NN
cord-320417-01l27d99	90	4	collection	collection	NN
cord-320417-01l27d99	90	5	had	have	VBD
cord-320417-01l27d99	90	6	916	916	CD
cord-320417-01l27d99	90	7	sequences	sequence	NNS
cord-320417-01l27d99	90	8	,	,	,
cord-320417-01l27d99	90	9	and	and	CC
cord-320417-01l27d99	90	10	its	-PRON-	PRP$
cord-320417-01l27d99	90	11	2D	2d	JJ
cord-320417-01l27d99	90	12	plot	plot	NN
cord-320417-01l27d99	90	13	shows	show	VBZ
cord-320417-01l27d99	90	14	increased	increase	VBN
cord-320417-01l27d99	90	15	differences	difference	NNS
cord-320417-01l27d99	90	16	when	when	WRB
cord-320417-01l27d99	90	17	compared	compare	VBN
cord-320417-01l27d99	90	18	with	with	IN
cord-320417-01l27d99	90	19	that	that	DT
cord-320417-01l27d99	90	20	of	of	IN
cord-320417-01l27d99	90	21	New	New	NNP
cord-320417-01l27d99	90	22	York	York	NNP
cord-320417-01l27d99	90	23	.	.	.
cord-320417-01l27d99	91	1	In	in	IN
cord-320417-01l27d99	91	2	California	California	NNP
cord-320417-01l27d99	91	3	,	,	,
cord-320417-01l27d99	91	4	the	the	DT
cord-320417-01l27d99	91	5	largest	large	JJS
cord-320417-01l27d99	91	6	cluster	cluster	NN
cord-320417-01l27d99	91	7	still	still	RB
cord-320417-01l27d99	91	8	belongs	belong	VBZ
cord-320417-01l27d99	91	9	to	to	IN
cord-320417-01l27d99	91	10	the	the	DT
cord-320417-01l27d99	91	11	G	g	NN
cord-320417-01l27d99	91	12	clade	clade	NN
cord-320417-01l27d99	91	13	.	.	.
cord-320417-01l27d99	92	1	Yet	yet	CC
cord-320417-01l27d99	92	2	,	,	,
cord-320417-01l27d99	92	3	both	both	CC
cord-320417-01l27d99	92	4	the	the	DT
cord-320417-01l27d99	92	5	S	S	NNP
cord-320417-01l27d99	92	6	and	and	CC
cord-320417-01l27d99	92	7	GR	GR	NNP
cord-320417-01l27d99	92	8	clades	clade	NNS
cord-320417-01l27d99	92	9	are	be	VBP
cord-320417-01l27d99	92	10	significantly	significantly	RB
cord-320417-01l27d99	92	11	bigger	big	JJR
cord-320417-01l27d99	92	12	than	than	IN
cord-320417-01l27d99	92	13	those	those	DT
cord-320417-01l27d99	92	14	found	find	VBN
cord-320417-01l27d99	92	15	in	in	IN
cord-320417-01l27d99	92	16	New	New	NNP
cord-320417-01l27d99	92	17	York	York	NNP
cord-320417-01l27d99	92	18	.	.	.
cord-320417-01l27d99	93	1	The	the	DT
cord-320417-01l27d99	93	2	V	v	NN
cord-320417-01l27d99	93	3	clade	clade	NN
cord-320417-01l27d99	93	4	is	be	VBZ
cord-320417-01l27d99	93	5	the	the	DT
cord-320417-01l27d99	93	6	least	least	RBS
cord-320417-01l27d99	93	7	-	-	HYPH
cord-320417-01l27d99	93	8	populous	populous	JJ
cord-320417-01l27d99	93	9	.	.	.
cord-320417-01l27d99	94	1	Again	again	RB
cord-320417-01l27d99	94	2	,	,	,
cord-320417-01l27d99	94	3	inter	inter	JJ
cord-320417-01l27d99	94	4	-	-	JJ
cord-320417-01l27d99	94	5	clade	clade	JJ
cord-320417-01l27d99	94	6	co	co	NN
cord-320417-01l27d99	94	7	-	-	JJ
cord-320417-01l27d99	94	8	occurring	occur	VBG
cord-320417-01l27d99	94	9	SNP	SNP	NNP
cord-320417-01l27d99	94	10	pairs	pair	NNS
cord-320417-01l27d99	94	11	are	be	VBP
cord-320417-01l27d99	94	12	found	find	VBN
cord-320417-01l27d99	94	13	between	between	IN
cord-320417-01l27d99	94	14	the	the	DT
cord-320417-01l27d99	94	15	11083	11083	CD
cord-320417-01l27d99	94	16	of	of	IN
cord-320417-01l27d99	94	17	the	the	DT
cord-320417-01l27d99	94	18	V	v	NN
cord-320417-01l27d99	94	19	clade	clade	NN
cord-320417-01l27d99	94	20	and	and	CC
cord-320417-01l27d99	94	21	all	all	DT
cord-320417-01l27d99	94	22	other	other	JJ
cord-320417-01l27d99	94	23	representative	representative	JJ
cord-320417-01l27d99	94	24	loci	locus	NNS
cord-320417-01l27d99	94	25	of	of	IN
cord-320417-01l27d99	94	26	the	the	DT
cord-320417-01l27d99	94	27	G	g	NN
cord-320417-01l27d99	94	28	clade	clade	NN
cord-320417-01l27d99	94	29	and	and	CC
cord-320417-01l27d99	94	30	GH	GH	NNP
cord-320417-01l27d99	94	31	clade	clade	NN
cord-320417-01l27d99	94	32	that	that	WDT
cord-320417-01l27d99	94	33	correspond	correspond	VBP
cord-320417-01l27d99	94	34	to	to	IN
cord-320417-01l27d99	94	35	six	six	CD
cord-320417-01l27d99	94	36	lineages	lineage	NNS
cord-320417-01l27d99	94	37	(	(	-LRB-
cord-320417-01l27d99	94	38	NCBI	NCBI	NNP
cord-320417-01l27d99	94	39	access	access	NN
cord-320417-01l27d99	94	40	ID	ID	NNP
cord-320417-01l27d99	94	41	:	:	:
cord-320417-01l27d99	94	42	MT628091	mt628091	NN
cord-320417-01l27d99	94	43	,	,	,
cord-320417-01l27d99	94	44	MT628092	mt628092	NN
cord-320417-01l27d99	94	45	,	,	,
cord-320417-01l27d99	94	46	MT628093	mt628093	NN
cord-320417-01l27d99	94	47	,	,	,
cord-320417-01l27d99	94	48	MT750350	MT750350	NNP
cord-320417-01l27d99	94	49	,	,	,
cord-320417-01l27d99	94	50	MT750445	MT750445	NNP
cord-320417-01l27d99	94	51	,	,	,
cord-320417-01l27d99	94	52	and	and	CC
cord-320417-01l27d99	94	53	MT806758	MT806758	NNP
cord-320417-01l27d99	94	54	)	)	-RRB-
cord-320417-01l27d99	94	55	.	.	.
cord-320417-01l27d99	95	1	The	the	DT
cord-320417-01l27d99	95	2	Washington	Washington	NNP
cord-320417-01l27d99	95	3	genome	genome	NN
cord-320417-01l27d99	95	4	collection	collection	NN
cord-320417-01l27d99	95	5	had	have	VBD
cord-320417-01l27d99	95	6	3,572	3,572	CD
cord-320417-01l27d99	95	7	sequences	sequence	NNS
cord-320417-01l27d99	95	8	,	,	,
cord-320417-01l27d99	95	9	and	and	CC
cord-320417-01l27d99	95	10	its	-PRON-	PRP$
cord-320417-01l27d99	95	11	2D	2d	JJ
cord-320417-01l27d99	95	12	plot	plot	NN
cord-320417-01l27d99	95	13	shows	show	VBZ
cord-320417-01l27d99	95	14	significantly	significantly	RB
cord-320417-01l27d99	95	15	increased	increase	VBN
cord-320417-01l27d99	95	16	populations	population	NNS
cord-320417-01l27d99	95	17	in	in	IN
cord-320417-01l27d99	95	18	the	the	DT
cord-320417-01l27d99	95	19	S	S	NNP
cord-320417-01l27d99	95	20	and	and	CC
cord-320417-01l27d99	95	21	the	the	DT
cord-320417-01l27d99	95	22	GR	GR	NNP
cord-320417-01l27d99	95	23	clades	clade	NNS
cord-320417-01l27d99	95	24	.	.	.
cord-320417-01l27d99	96	1	Three	three	CD
cord-320417-01l27d99	96	2	groups	group	NNS
cord-320417-01l27d99	96	3	of	of	IN
cord-320417-01l27d99	96	4	inter	inter	JJ
cord-320417-01l27d99	96	5	-	-	JJ
cord-320417-01l27d99	96	6	clade	clade	JJ
cord-320417-01l27d99	96	7	co	co	NN
cord-320417-01l27d99	96	8	-	-	JJ
cord-320417-01l27d99	96	9	occurring	occur	VBG
cord-320417-01l27d99	96	10	SNP	SNP	NNP
cord-320417-01l27d99	96	11	pairs	pair	NNS
cord-320417-01l27d99	96	12	are	be	VBP
cord-320417-01l27d99	96	13	revealed	reveal	VBN
cord-320417-01l27d99	96	14	.	.	.
cord-320417-01l27d99	97	1	The	the	DT
cord-320417-01l27d99	97	2	first	first	JJ
cord-320417-01l27d99	97	3	one	one	NN
cord-320417-01l27d99	97	4	is	be	VBZ
cord-320417-01l27d99	97	5	between	between	IN
cord-320417-01l27d99	97	6	the	the	DT
cord-320417-01l27d99	97	7	locus	locus	NN
cord-320417-01l27d99	97	8	at	at	IN
cord-320417-01l27d99	97	9	11083	11083	CD
cord-320417-01l27d99	97	10	from	from	IN
cord-320417-01l27d99	97	11	the	the	DT
cord-320417-01l27d99	97	12	V	v	NN
cord-320417-01l27d99	97	13	clade	clade	NN
cord-320417-01l27d99	97	14	and	and	CC
cord-320417-01l27d99	97	15	all	all	DT
cord-320417-01l27d99	97	16	other	other	JJ
cord-320417-01l27d99	97	17	major	major	JJ
cord-320417-01l27d99	97	18	clades	clade	NNS
cord-320417-01l27d99	97	19	;	;	:
cord-320417-01l27d99	97	20	the	the	DT
cord-320417-01l27d99	97	21	second	second	JJ
cord-320417-01l27d99	97	22	one	one	NN
cord-320417-01l27d99	97	23	is	be	VBZ
cord-320417-01l27d99	97	24	found	find	VBN
cord-320417-01l27d99	97	25	between	between	IN
cord-320417-01l27d99	97	26	the	the	DT
cord-320417-01l27d99	97	27	S	S	NNP
cord-320417-01l27d99	97	28	and	and	CC
cord-320417-01l27d99	97	29	the	the	DT
cord-320417-01l27d99	97	30	G	g	NN
cord-320417-01l27d99	97	31	clades	clade	NNS
cord-320417-01l27d99	97	32	,	,	,
cord-320417-01l27d99	97	33	involving	involve	VBG
cord-320417-01l27d99	97	34	both	both	DT
cord-320417-01l27d99	97	35	representative	representative	JJ
cord-320417-01l27d99	97	36	loci	locus	NNS
cord-320417-01l27d99	97	37	(	(	-LRB-
cord-320417-01l27d99	97	38	8782	8782	CD
cord-320417-01l27d99	97	39	and	and	CC
cord-320417-01l27d99	97	40	28144	28144	CD
cord-320417-01l27d99	97	41	)	)	-RRB-
cord-320417-01l27d99	97	42	of	of	IN
cord-320417-01l27d99	97	43	the	the	DT
cord-320417-01l27d99	97	44	S	S	NNP
cord-320417-01l27d99	97	45	clade	clade	NN
cord-320417-01l27d99	97	46	;	;	:
cord-320417-01l27d99	97	47	the	the	DT
cord-320417-01l27d99	97	48	third	third	JJ
cord-320417-01l27d99	97	49	one	one	NN
cord-320417-01l27d99	97	50	is	be	VBZ
cord-320417-01l27d99	97	51	at	at	IN
cord-320417-01l27d99	97	52	(	(	-LRB-
cord-320417-01l27d99	97	53	25563	25563	CD
cord-320417-01l27d99	97	54	,	,	,
cord-320417-01l27d99	97	55	28881/2/3	28881/2/3	CD
cord-320417-01l27d99	97	56	)	)	-RRB-
cord-320417-01l27d99	97	57	between	between	IN
cord-320417-01l27d99	97	58	the	the	DT
cord-320417-01l27d99	97	59	GH	GH	NNP
cord-320417-01l27d99	97	60	and	and	CC
cord-320417-01l27d99	97	61	the	the	DT
cord-320417-01l27d99	97	62	GR	GR	NNP
cord-320417-01l27d99	97	63	clades	clade	NNS
cord-320417-01l27d99	97	64	.	.	.
cord-320417-01l27d99	98	1	The	the	DT
cord-320417-01l27d99	98	2	long	long	JJ
cord-320417-01l27d99	98	3	list	list	NN
cord-320417-01l27d99	98	4	of	of	IN
cord-320417-01l27d99	98	5	corresponding	correspond	VBG
cord-320417-01l27d99	98	6	lineages	lineage	NNS
cord-320417-01l27d99	98	7	can	can	MD
cord-320417-01l27d99	98	8	be	be	VB
cord-320417-01l27d99	98	9	found	find	VBN
cord-320417-01l27d99	98	10	in	in	IN
cord-320417-01l27d99	98	11	supplemental	supplemental	JJ
cord-320417-01l27d99	98	12	Table	table	NN
cord-320417-01l27d99	98	13	s1	s1	NN
cord-320417-01l27d99	98	14	.	.	.
cord-320417-01l27d99	99	1	Here	here	RB
cord-320417-01l27d99	99	2	,	,	,
cord-320417-01l27d99	99	3	I	-PRON-	PRP
cord-320417-01l27d99	99	4	paid	pay	VBD
cord-320417-01l27d99	99	5	my	-PRON-	PRP$
cord-320417-01l27d99	99	6	attention	attention	NN
cord-320417-01l27d99	99	7	to	to	IN
cord-320417-01l27d99	99	8	the	the	DT
cord-320417-01l27d99	99	9	second	second	JJ
cord-320417-01l27d99	99	10	group	group	NN
cord-320417-01l27d99	99	11	,	,	,
cord-320417-01l27d99	99	12	in	in	IN
cord-320417-01l27d99	99	13	which	which	WDT
cord-320417-01l27d99	99	14	two	two	CD
cord-320417-01l27d99	99	15	representative	representative	JJ
cord-320417-01l27d99	99	16	loci	locus	NNS
cord-320417-01l27d99	99	17	simultaneously	simultaneously	RB
cord-320417-01l27d99	99	18	crossing	cross	VBG
cord-320417-01l27d99	99	19	over	over	RP
cord-320417-01l27d99	99	20	into	into	IN
cord-320417-01l27d99	99	21	a	a	DT
cord-320417-01l27d99	99	22	distinct	distinct	JJ
cord-320417-01l27d99	99	23	clade	clade	NN
cord-320417-01l27d99	99	24	,	,	,
cord-320417-01l27d99	99	25	which	which	WDT
cord-320417-01l27d99	99	26	would	would	MD
cord-320417-01l27d99	99	27	be	be	VB
cord-320417-01l27d99	99	28	stronger	strong	JJR
cord-320417-01l27d99	99	29	evidence	evidence	NN
cord-320417-01l27d99	99	30	for	for	IN
cord-320417-01l27d99	99	31	homologous	homologous	JJ
cord-320417-01l27d99	99	32	genetic	genetic	JJ
cord-320417-01l27d99	99	33	recombination	recombination	NN
cord-320417-01l27d99	99	34	.	.	.
cord-320417-01l27d99	100	1	Three	three	CD
cord-320417-01l27d99	100	2	candidate	candidate	NN
cord-320417-01l27d99	100	3	lineages	lineage	NNS
cord-320417-01l27d99	100	4	were	be	VBD
cord-320417-01l27d99	100	5	identified	identify	VBN
cord-320417-01l27d99	100	6	(	(	-LRB-
cord-320417-01l27d99	100	7	also	also	RB
cord-320417-01l27d99	100	8	labeled	label	VBN
cord-320417-01l27d99	100	9	with	with	IN
cord-320417-01l27d99	100	10	an	an	DT
cord-320417-01l27d99	100	11	underline	underline	NN
cord-320417-01l27d99	100	12	in	in	IN
cord-320417-01l27d99	100	13	Table	Table	NNP
cord-320417-01l27d99	100	14	S1	S1	NNP
cord-320417-01l27d99	100	15	.	.	.
cord-320417-01l27d99	101	1	NCBI	NCBI	NNP
cord-320417-01l27d99	101	2	access	access	NN
cord-320417-01l27d99	101	3	ID	ID	NNP
cord-320417-01l27d99	102	1	:	:	:
cord-320417-01l27d99	102	2	MT834063	MT834063	NNP
cord-320417-01l27d99	102	3	,	,	,
cord-320417-01l27d99	102	4	MT821583	MT821583	NNP
cord-320417-01l27d99	102	5	,	,	,
cord-320417-01l27d99	102	6	MT834220	MT834220	NNP
cord-320417-01l27d99	102	7	)	)	-RRB-
cord-320417-01l27d99	102	8	.	.	.
cord-320417-01l27d99	103	1	The	the	DT
cord-320417-01l27d99	103	2	lineage	lineage	NN
cord-320417-01l27d99	103	3	MT834063	mt834063	NN
cord-320417-01l27d99	103	4	has	have	VBZ
cord-320417-01l27d99	103	5	11	11	CD
cord-320417-01l27d99	103	6	loci	locus	NNS
cord-320417-01l27d99	103	7	(	(	-LRB-
cord-320417-01l27d99	103	8	316	316	CD
cord-320417-01l27d99	103	9	,	,	,
cord-320417-01l27d99	103	10	1526	1526	CD
cord-320417-01l27d99	103	11	,	,	,
cord-320417-01l27d99	103	12	5622	5622	CD
cord-320417-01l27d99	103	13	,	,	,
cord-320417-01l27d99	103	14	8782	8782	CD
cord-320417-01l27d99	103	15	,	,	,
cord-320417-01l27d99	103	16	14408	14408	CD
cord-320417-01l27d99	103	17	,	,	,
cord-320417-01l27d99	103	18	17561	17561	CD
cord-320417-01l27d99	103	19	,	,	,
cord-320417-01l27d99	103	20	17747	17747	CD
cord-320417-01l27d99	103	21	,	,	,
cord-320417-01l27d99	103	22	19839	19839	CD
cord-320417-01l27d99	103	23	,	,	,
cord-320417-01l27d99	103	24	23043	23043	CD
cord-320417-01l27d99	103	25	,	,	,
cord-320417-01l27d99	103	26	28144	28144	CD
cord-320417-01l27d99	103	27	and	and	CC
cord-320417-01l27d99	103	28	29784	29784	CD
cord-320417-01l27d99	103	29	)	)	-RRB-
cord-320417-01l27d99	103	30	,	,	,
cord-320417-01l27d99	103	31	whereas	whereas	IN
cord-320417-01l27d99	103	32	the	the	DT
cord-320417-01l27d99	103	33	other	other	JJ
cord-320417-01l27d99	103	34	lineage	lineage	NN
cord-320417-01l27d99	103	35	MT834220	mt834220	RB
cord-320417-01l27d99	103	36	has	have	VBZ
cord-320417-01l27d99	103	37	9	9	CD
cord-320417-01l27d99	103	38	loci	locus	NNS
cord-320417-01l27d99	103	39	(	(	-LRB-
cord-320417-01l27d99	103	40	241	241	CD
cord-320417-01l27d99	103	41	,	,	,
cord-320417-01l27d99	103	42	3037	3037	CD
cord-320417-01l27d99	103	43	,	,	,
cord-320417-01l27d99	103	44	8782	8782	CD
cord-320417-01l27d99	103	45	,	,	,
cord-320417-01l27d99	103	46	17747	17747	CD
cord-320417-01l27d99	103	47	,	,	,
cord-320417-01l27d99	103	48	17858	17858	CD
cord-320417-01l27d99	103	49	,	,	,
cord-320417-01l27d99	103	50	28144	28144	CD
cord-320417-01l27d99	103	51	,	,	,
cord-320417-01l27d99	103	52	28881	28881	CD
cord-320417-01l27d99	103	53	,	,	,
cord-320417-01l27d99	103	54	28882	28882	CD
cord-320417-01l27d99	103	55	and	and	CC
cord-320417-01l27d99	103	56	28883	28883	CD
cord-320417-01l27d99	103	57	)	)	-RRB-
cord-320417-01l27d99	103	58	,	,	,
cord-320417-01l27d99	103	59	all	all	DT
cord-320417-01l27d99	103	60	colored	color	VBN
cord-320417-01l27d99	103	61	according	accord	VBG
cord-320417-01l27d99	103	62	to	to	IN
cord-320417-01l27d99	103	63	distinct	distinct	JJ
cord-320417-01l27d99	103	64	clades	clade	NNS
cord-320417-01l27d99	103	65	.	.	.
cord-320417-01l27d99	104	1	In	in	IN
cord-320417-01l27d99	104	2	the	the	DT
cord-320417-01l27d99	104	3	case	case	NN
cord-320417-01l27d99	104	4	of	of	IN
cord-320417-01l27d99	104	5	MT834063	mt834063	NN
cord-320417-01l27d99	104	6	,	,	,
cord-320417-01l27d99	104	7	it	-PRON-	PRP
cord-320417-01l27d99	104	8	is	be	VBZ
cord-320417-01l27d99	104	9	expected	expect	VBN
cord-320417-01l27d99	104	10	that	that	IN
cord-320417-01l27d99	104	11	the	the	DT
cord-320417-01l27d99	104	12	genome	genome	NN
cord-320417-01l27d99	104	13	region	region	NN
cord-320417-01l27d99	104	14	between	between	IN
cord-320417-01l27d99	104	15	14408	14408	CD
cord-320417-01l27d99	104	16	and	and	CC
cord-320417-01l27d99	104	17	23403	23403	CD
cord-320417-01l27d99	104	18	of	of	IN
cord-320417-01l27d99	104	19	the	the	DT
cord-320417-01l27d99	104	20	G	g	NN
cord-320417-01l27d99	104	21	-	-	HYPH
cord-320417-01l27d99	104	22	clade	clade	NN
cord-320417-01l27d99	104	23	strain	strain	NN
cord-320417-01l27d99	104	24	was	be	VBD
cord-320417-01l27d99	104	25	swapped	swap	VBN
cord-320417-01l27d99	104	26	with	with	IN
cord-320417-01l27d99	104	27	the	the	DT
cord-320417-01l27d99	104	28	same	same	JJ
cord-320417-01l27d99	104	29	region	region	NN
cord-320417-01l27d99	104	30	in	in	IN
cord-320417-01l27d99	104	31	an	an	DT
cord-320417-01l27d99	104	32	S	s	NN
cord-320417-01l27d99	104	33	-	-	HYPH
cord-320417-01l27d99	104	34	clade	clade	NN
cord-320417-01l27d99	104	35	strain	strain	NN
cord-320417-01l27d99	104	36	.	.	.
cord-320417-01l27d99	105	1	In	in	IN
cord-320417-01l27d99	105	2	the	the	DT
cord-320417-01l27d99	105	3	case	case	NN
cord-320417-01l27d99	105	4	of	of	IN
cord-320417-01l27d99	105	5	MT834220	mt834220	RB
cord-320417-01l27d99	105	6	,	,	,
cord-320417-01l27d99	105	7	however	however	RB
cord-320417-01l27d99	105	8	,	,	,
cord-320417-01l27d99	105	9	it	-PRON-	PRP
cord-320417-01l27d99	105	10	is	be	VBZ
cord-320417-01l27d99	105	11	expected	expect	VBN
cord-320417-01l27d99	105	12	that	that	IN
cord-320417-01l27d99	105	13	the	the	DT
cord-320417-01l27d99	105	14	region	region	NN
cord-320417-01l27d99	105	15	between	between	IN
cord-320417-01l27d99	105	16	8782	8782	CD
cord-320417-01l27d99	105	17	and	and	CC
cord-320417-01l27d99	105	18	28144	28144	CD
cord-320417-01l27d99	105	19	of	of	IN
cord-320417-01l27d99	105	20	the	the	DT
cord-320417-01l27d99	105	21	S	S	NNP
cord-320417-01l27d99	105	22	-	-	HYPH
cord-320417-01l27d99	105	23	clade	clade	NN
cord-320417-01l27d99	105	24	strain	strain	NN
cord-320417-01l27d99	105	25	was	be	VBD
cord-320417-01l27d99	105	26	swapped	swap	VBN
cord-320417-01l27d99	105	27	with	with	IN
cord-320417-01l27d99	105	28	the	the	DT
cord-320417-01l27d99	105	29	same	same	JJ
cord-320417-01l27d99	105	30	region	region	NN
cord-320417-01l27d99	105	31	in	in	IN
cord-320417-01l27d99	105	32	a	a	DT
cord-320417-01l27d99	105	33	GR	GR	NNP
cord-320417-01l27d99	105	34	-	-	HYPH
cord-320417-01l27d99	105	35	clade	clade	NN
cord-320417-01l27d99	105	36	strain	strain	NN
cord-320417-01l27d99	105	37	.	.	.
cord-320417-01l27d99	106	1	Also	also	RB
cord-320417-01l27d99	106	2	,	,	,
cord-320417-01l27d99	106	3	the	the	DT
cord-320417-01l27d99	106	4	absence	absence	NN
cord-320417-01l27d99	106	5	of	of	IN
cord-320417-01l27d99	106	6	the	the	DT
cord-320417-01l27d99	106	7	locus	locus	NN
cord-320417-01l27d99	106	8	at	at	IN
cord-320417-01l27d99	106	9	23043	23043	CD
cord-320417-01l27d99	106	10	in	in	IN
cord-320417-01l27d99	106	11	MT834220	MT834220	NNP
cord-320417-01l27d99	106	12	,	,	,
cord-320417-01l27d99	106	13	a	a	DT
cord-320417-01l27d99	106	14	signature	signature	NN
cord-320417-01l27d99	106	15	SNP	SNP	NNP
cord-320417-01l27d99	106	16	of	of	IN
cord-320417-01l27d99	106	17	all	all	DT
cord-320417-01l27d99	106	18	G-(GH	G-(GH	NNP
cord-320417-01l27d99	106	19	and	and	CC
cord-320417-01l27d99	106	20	GR	GR	NNP
cord-320417-01l27d99	106	21	)	)	-RRB-
cord-320417-01l27d99	106	22	clade	clade	NN
cord-320417-01l27d99	106	23	lineages	lineage	NNS
cord-320417-01l27d99	106	24	,	,	,
cord-320417-01l27d99	106	25	is	be	VBZ
cord-320417-01l27d99	106	26	another	another	DT
cord-320417-01l27d99	106	27	strong	strong	JJ
cord-320417-01l27d99	106	28	piece	piece	NN
cord-320417-01l27d99	106	29	of	of	IN
cord-320417-01l27d99	106	30	evidence	evidence	NN
cord-320417-01l27d99	106	31	for	for	IN
cord-320417-01l27d99	106	32	homologous	homologous	JJ
cord-320417-01l27d99	106	33	genetic	genetic	JJ
cord-320417-01l27d99	106	34	recombination	recombination	NN
cord-320417-01l27d99	106	35	.	.	.
cord-320417-01l27d99	107	1	The	the	DT
cord-320417-01l27d99	107	2	third	third	JJ
cord-320417-01l27d99	107	3	lineage	lineage	NN
cord-320417-01l27d99	107	4	of	of	IN
cord-320417-01l27d99	107	5	MT821583	MT821583	NNP
cord-320417-01l27d99	107	6	is	be	VBZ
cord-320417-01l27d99	107	7	similar	similar	JJ
cord-320417-01l27d99	107	8	to	to	IN
cord-320417-01l27d99	107	9	MT834220	mt834220	RB
cord-320417-01l27d99	107	10	but	but	CC
cord-320417-01l27d99	107	11	has	have	VBZ
cord-320417-01l27d99	107	12	additional	additional	JJ
cord-320417-01l27d99	107	13	low	low	JJ
cord-320417-01l27d99	107	14	-	-	HYPH
cord-320417-01l27d99	107	15	profile	profile	NN
cord-320417-01l27d99	107	16	SNPs	snp	NNS
cord-320417-01l27d99	107	17	.	.	.
cord-320417-01l27d99	108	1	So	so	RB
cord-320417-01l27d99	108	2	far	far	RB
cord-320417-01l27d99	108	3	,	,	,
cord-320417-01l27d99	108	4	I	-PRON-	PRP
cord-320417-01l27d99	108	5	have	have	VBP
cord-320417-01l27d99	108	6	demonstrated	demonstrate	VBN
cord-320417-01l27d99	108	7	the	the	DT
cord-320417-01l27d99	108	8	usage	usage	NN
cord-320417-01l27d99	108	9	of	of	IN
cord-320417-01l27d99	108	10	2D	2D	NNP
cord-320417-01l27d99	108	11	co	co	NN
cord-320417-01l27d99	108	12	-	-	NN
cord-320417-01l27d99	108	13	occurring	occur	VBG
cord-320417-01l27d99	108	14	SNP	SNP	NNP
cord-320417-01l27d99	108	15	mapping	mapping	NN
cord-320417-01l27d99	108	16	for	for	IN
cord-320417-01l27d99	108	17	detecting	detect	VBG
cord-320417-01l27d99	108	18	inter	inter	JJ
cord-320417-01l27d99	108	19	-	-	JJ
cord-320417-01l27d99	108	20	clade	clade	JJ
cord-320417-01l27d99	108	21	hybrid	hybrid	JJ
cord-320417-01l27d99	108	22	lineages	lineage	NNS
cord-320417-01l27d99	108	23	of	of	IN
cord-320417-01l27d99	108	24	the	the	DT
cord-320417-01l27d99	108	25	SARS	SARS	NNP
cord-320417-01l27d99	108	26	-	-	HYPH
cord-320417-01l27d99	108	27	CoV-2	CoV-2	NNP
cord-320417-01l27d99	108	28	virus	virus	NN
cord-320417-01l27d99	108	29	.	.	.
cord-320417-01l27d99	109	1	Next	next	RB
cord-320417-01l27d99	109	2	,	,	,
cord-320417-01l27d99	109	3	I	-PRON-	PRP
cord-320417-01l27d99	109	4	also	also	RB
cord-320417-01l27d99	109	5	examined	examine	VBD
cord-320417-01l27d99	109	6	genome	genome	NN
cord-320417-01l27d99	109	7	collections	collection	NNS
cord-320417-01l27d99	109	8	from	from	IN
cord-320417-01l27d99	109	9	international	international	JJ
cord-320417-01l27d99	109	10	regions	region	NNS
cord-320417-01l27d99	109	11	and	and	CC
cord-320417-01l27d99	109	12	focused	focus	VBD
cord-320417-01l27d99	109	13	on	on	IN
cord-320417-01l27d99	109	14	the	the	DT
cord-320417-01l27d99	109	15	following	follow	VBG
cord-320417-01l27d99	109	16	four	four	CD
cord-320417-01l27d99	109	17	countries	country	NNS
cord-320417-01l27d99	109	18	:	:	:
cord-320417-01l27d99	109	19	China	China	NNP
cord-320417-01l27d99	109	20	,	,	,
cord-320417-01l27d99	109	21	Japan	Japan	NNP
cord-320417-01l27d99	109	22	,	,	,
cord-320417-01l27d99	109	23	Italy	Italy	NNP
cord-320417-01l27d99	109	24	,	,	,
cord-320417-01l27d99	109	25	and	and	CC
cord-320417-01l27d99	109	26	Spain	Spain	NNP
cord-320417-01l27d99	109	27	,	,	,
cord-320417-01l27d99	109	28	where	where	WRB
cord-320417-01l27d99	109	29	early	early	JJ
cord-320417-01l27d99	109	30	COVID-19	covid-19	JJ
cord-320417-01l27d99	109	31	outbreaks	outbreak	NNS
cord-320417-01l27d99	109	32	were	be	VBD
cord-320417-01l27d99	109	33	detected	detect	VBN
cord-320417-01l27d99	109	34	(	(	-LRB-
cord-320417-01l27d99	109	35	see	see	VB
cord-320417-01l27d99	109	36	Figure	figure	NN
cord-320417-01l27d99	109	37	5	5	CD
cord-320417-01l27d99	109	38	)	)	-RRB-
cord-320417-01l27d99	109	39	.	.	.
cord-320417-01l27d99	110	1	2D	2D	NNP
cord-320417-01l27d99	110	2	plots	plot	NNS
cord-320417-01l27d99	110	3	of	of	IN
cord-320417-01l27d99	110	4	these	these	DT
cord-320417-01l27d99	110	5	four	four	CD
cord-320417-01l27d99	110	6	regions	region	NNS
cord-320417-01l27d99	110	7	are	be	VBP
cord-320417-01l27d99	110	8	very	very	RB
cord-320417-01l27d99	110	9	different	different	JJ
cord-320417-01l27d99	110	10	.	.	.
cord-320417-01l27d99	111	1	The	the	DT
cord-320417-01l27d99	111	2	genome	genome	NN
cord-320417-01l27d99	111	3	collection	collection	NN
cord-320417-01l27d99	111	4	from	from	IN
cord-320417-01l27d99	111	5	China	China	NNP
cord-320417-01l27d99	111	6	had	have	VBD
cord-320417-01l27d99	111	7	79	79	CD
cord-320417-01l27d99	111	8	sequences	sequence	NNS
cord-320417-01l27d99	111	9	with	with	IN
cord-320417-01l27d99	111	10	the	the	DT
cord-320417-01l27d99	111	11	S	S	NNP
cord-320417-01l27d99	111	12	clade	clade	NN
cord-320417-01l27d99	111	13	being	be	VBG
cord-320417-01l27d99	111	14	the	the	DT
cord-320417-01l27d99	111	15	most	most	RBS
cord-320417-01l27d99	111	16	dominant	dominant	JJ
cord-320417-01l27d99	111	17	clade	clade	NN
cord-320417-01l27d99	111	18	.	.	.
cord-320417-01l27d99	112	1	It	-PRON-	PRP
cord-320417-01l27d99	112	2	is	be	VBZ
cord-320417-01l27d99	112	3	followed	follow	VBN
cord-320417-01l27d99	112	4	by	by	IN
cord-320417-01l27d99	112	5	the	the	DT
cord-320417-01l27d99	112	6	V	v	NN
cord-320417-01l27d99	112	7	,	,	,
cord-320417-01l27d99	112	8	G	G	NNP
cord-320417-01l27d99	112	9	,	,	,
cord-320417-01l27d99	112	10	and	and	CC
cord-320417-01l27d99	112	11	GR	GR	NNP
cord-320417-01l27d99	112	12	clades	clade	NNS
cord-320417-01l27d99	112	13	based	base	VBN
cord-320417-01l27d99	112	14	on	on	IN
cord-320417-01l27d99	112	15	the	the	DT
cord-320417-01l27d99	112	16	population	population	NN
cord-320417-01l27d99	112	17	size	size	NN
cord-320417-01l27d99	112	18	.	.	.
cord-320417-01l27d99	113	1	No	no	DT
cord-320417-01l27d99	113	2	GH	GH	NNP
cord-320417-01l27d99	113	3	clade	clade	NN
cord-320417-01l27d99	113	4	was	be	VBD
cord-320417-01l27d99	113	5	detected	detect	VBN
cord-320417-01l27d99	113	6	.	.	.
cord-320417-01l27d99	114	1	Two	two	CD
cord-320417-01l27d99	114	2	inter	inter	JJ
cord-320417-01l27d99	114	3	-	-	JJ
cord-320417-01l27d99	114	4	clade	clade	JJ
cord-320417-01l27d99	114	5	co	co	NN
cord-320417-01l27d99	114	6	-	-	JJ
cord-320417-01l27d99	114	7	occurring	occur	VBG
cord-320417-01l27d99	114	8	SNP	SNP	NNP
cord-320417-01l27d99	114	9	pairs	pair	NNS
cord-320417-01l27d99	114	10	were	be	VBD
cord-320417-01l27d99	114	11	found	find	VBN
cord-320417-01l27d99	114	12	at	at	IN
cord-320417-01l27d99	114	13	(	(	-LRB-
cord-320417-01l27d99	114	14	8287	8287	CD
cord-320417-01l27d99	114	15	,	,	,
cord-320417-01l27d99	114	16	11083	11083	CD
cord-320417-01l27d99	114	17	)	)	-RRB-
cord-320417-01l27d99	114	18	and	and	CC
cord-320417-01l27d99	114	19	(	(	-LRB-
cord-320417-01l27d99	114	20	28144	28144	CD
cord-320417-01l27d99	114	21	,	,	,
cord-320417-01l27d99	114	22	11083	11083	CD
cord-320417-01l27d99	114	23	)	)	-RRB-
cord-320417-01l27d99	114	24	,	,	,
cord-320417-01l27d99	114	25	both	both	DT
cord-320417-01l27d99	114	26	are	be	VBP
cord-320417-01l27d99	114	27	between	between	IN
cord-320417-01l27d99	114	28	the	the	DT
cord-320417-01l27d99	114	29	S	S	NNP
cord-320417-01l27d99	114	30	and	and	CC
cord-320417-01l27d99	114	31	the	the	DT
cord-320417-01l27d99	114	32	V	v	NN
cord-320417-01l27d99	114	33	clades	clade	NNS
cord-320417-01l27d99	114	34	,	,	,
cord-320417-01l27d99	114	35	corresponding	correspond	VBG
cord-320417-01l27d99	114	36	to	to	IN
cord-320417-01l27d99	114	37	two	two	CD
cord-320417-01l27d99	114	38	lineages	lineage	NNS
cord-320417-01l27d99	114	39	(	(	-LRB-
cord-320417-01l27d99	114	40	NCBI	NCBI	NNP
cord-320417-01l27d99	114	41	access	access	NN
cord-320417-01l27d99	114	42	ID	ID	NNP
cord-320417-01l27d99	114	43	:	:	:
cord-320417-01l27d99	114	44	MT049951	MT049951	NNP
cord-320417-01l27d99	114	45	and	and	CC
cord-320417-01l27d99	114	46	MT226610	MT226610	NNP
cord-320417-01l27d99	114	47	)	)	-RRB-
cord-320417-01l27d99	114	48	.	.	.
cord-320417-01l27d99	115	1	The	the	DT
cord-320417-01l27d99	115	2	genome	genome	NN
cord-320417-01l27d99	115	3	collection	collection	NN
cord-320417-01l27d99	115	4	from	from	IN
cord-320417-01l27d99	115	5	Japan	Japan	NNP
cord-320417-01l27d99	115	6	had	have	VBD
cord-320417-01l27d99	115	7	84	84	CD
cord-320417-01l27d99	115	8	sequences	sequence	NNS
cord-320417-01l27d99	115	9	with	with	IN
cord-320417-01l27d99	115	10	the	the	DT
cord-320417-01l27d99	115	11	GR	GR	NNP
cord-320417-01l27d99	115	12	clade	clade	NN
cord-320417-01l27d99	115	13	as	as	IN
cord-320417-01l27d99	115	14	the	the	DT
cord-320417-01l27d99	115	15	largest	large	JJS
cord-320417-01l27d99	115	16	cluster	cluster	NN
cord-320417-01l27d99	115	17	,	,	,
cord-320417-01l27d99	115	18	followed	follow	VBN
cord-320417-01l27d99	115	19	by	by	IN
cord-320417-01l27d99	115	20	a	a	DT
cord-320417-01l27d99	115	21	smaller	small	JJR
cord-320417-01l27d99	115	22	GH	GH	NNP
cord-320417-01l27d99	115	23	clade	clade	NN
cord-320417-01l27d99	115	24	.	.	.
cord-320417-01l27d99	116	1	The	the	DT
cord-320417-01l27d99	116	2	S	s	NN
cord-320417-01l27d99	116	3	-	-	HYPH
cord-320417-01l27d99	116	4	clade	clade	NN
cord-320417-01l27d99	116	5	is	be	VBZ
cord-320417-01l27d99	116	6	the	the	DT
cord-320417-01l27d99	116	7	least	least	RBS
cord-320417-01l27d99	116	8	-	-	HYPH
cord-320417-01l27d99	116	9	populous	populous	JJ
cord-320417-01l27d99	116	10	.	.	.
cord-320417-01l27d99	117	1	No	no	DT
cord-320417-01l27d99	117	2	viral	viral	JJ
cord-320417-01l27d99	117	3	lineage	lineage	NN
cord-320417-01l27d99	117	4	of	of	IN
cord-320417-01l27d99	117	5	the	the	DT
cord-320417-01l27d99	117	6	V	v	NN
cord-320417-01l27d99	117	7	clade	clade	NN
cord-320417-01l27d99	117	8	was	be	VBD
cord-320417-01l27d99	117	9	detected	detect	VBN
cord-320417-01l27d99	117	10	.	.	.
cord-320417-01l27d99	118	1	Two	two	CD
cord-320417-01l27d99	118	2	inter	inter	JJ
cord-320417-01l27d99	118	3	-	-	JJ
cord-320417-01l27d99	118	4	clade	clade	JJ
cord-320417-01l27d99	118	5	co	co	NN
cord-320417-01l27d99	118	6	-	-	JJ
cord-320417-01l27d99	118	7	occurring	occur	VBG
cord-320417-01l27d99	118	8	SNP	SNP	NNP
cord-320417-01l27d99	118	9	pairs	pair	NNS
cord-320417-01l27d99	118	10	were	be	VBD
cord-320417-01l27d99	118	11	found	find	VBN
cord-320417-01l27d99	118	12	,	,	,
cord-320417-01l27d99	118	13	one	one	CD
cord-320417-01l27d99	118	14	at	at	IN
cord-320417-01l27d99	118	15	(	(	-LRB-
cord-320417-01l27d99	118	16	11083	11083	CD
cord-320417-01l27d99	118	17	,	,	,
cord-320417-01l27d99	118	18	14408	14408	CD
cord-320417-01l27d99	118	19	)	)	-RRB-
cord-320417-01l27d99	118	20	between	between	IN
cord-320417-01l27d99	118	21	the	the	DT
cord-320417-01l27d99	118	22	V	v	NN
cord-320417-01l27d99	118	23	and	and	CC
cord-320417-01l27d99	118	24	the	the	DT
cord-320417-01l27d99	118	25	G	g	NN
cord-320417-01l27d99	118	26	clades	clade	NNS
cord-320417-01l27d99	118	27	(	(	-LRB-
cord-320417-01l27d99	118	28	NCBI	NCBI	NNP
cord-320417-01l27d99	118	29	access	access	NN
cord-320417-01l27d99	118	30	ID	ID	NNP
cord-320417-01l27d99	118	31	:	:	:
cord-320417-01l27d99	118	32	LC542809	LC542809	NNP
cord-320417-01l27d99	118	33	)	)	-RRB-
cord-320417-01l27d99	118	34	,	,	,
cord-320417-01l27d99	118	35	and	and	CC
cord-320417-01l27d99	118	36	the	the	DT
cord-320417-01l27d99	118	37	other	other	JJ
cord-320417-01l27d99	118	38	one	one	CD
cord-320417-01l27d99	118	39	at	at	IN
cord-320417-01l27d99	118	40	(	(	-LRB-
cord-320417-01l27d99	118	41	25563	25563	CD
cord-320417-01l27d99	118	42	,	,	,
cord-320417-01l27d99	118	43	28881/2/3	28881/2/3	CD
cord-320417-01l27d99	118	44	)	)	-RRB-
cord-320417-01l27d99	118	45	between	between	IN
cord-320417-01l27d99	118	46	the	the	DT
cord-320417-01l27d99	118	47	GH	GH	NNP
cord-320417-01l27d99	118	48	and	and	CC
cord-320417-01l27d99	118	49	the	the	DT
cord-320417-01l27d99	118	50	GR	GR	NNP
cord-320417-01l27d99	118	51	clades	clade	NNS
cord-320417-01l27d99	119	1	(	(	-LRB-
cord-320417-01l27d99	119	2	NCBI	NCBI	NNP
cord-320417-01l27d99	119	3	access	access	NN
cord-320417-01l27d99	119	4	ID	ID	NNP
cord-320417-01l27d99	119	5	:	:	:
cord-320417-01l27d99	119	6	LC556322	lc556322	NN
cord-320417-01l27d99	119	7	)	)	-RRB-
cord-320417-01l27d99	119	8	.	.	.
cord-320417-01l27d99	120	1	The	the	DT
cord-320417-01l27d99	120	2	genome	genome	NN
cord-320417-01l27d99	120	3	collection	collection	NN
cord-320417-01l27d99	120	4	from	from	IN
cord-320417-01l27d99	120	5	Spain	Spain	NNP
cord-320417-01l27d99	120	6	had	have	VBD
cord-320417-01l27d99	120	7	37	37	CD
cord-320417-01l27d99	120	8	sequences	sequence	NNS
cord-320417-01l27d99	120	9	.	.	.
cord-320417-01l27d99	121	1	Two	two	CD
cord-320417-01l27d99	121	2	dominant	dominant	JJ
cord-320417-01l27d99	121	3	clusters	cluster	NNS
cord-320417-01l27d99	121	4	are	be	VBP
cord-320417-01l27d99	121	5	the	the	DT
cord-320417-01l27d99	121	6	S	S	NNP
cord-320417-01l27d99	121	7	and	and	CC
cord-320417-01l27d99	121	8	G	g	NN
cord-320417-01l27d99	121	9	clades	clade	NNS
cord-320417-01l27d99	121	10	,	,	,
cord-320417-01l27d99	121	11	followed	follow	VBN
cord-320417-01l27d99	121	12	by	by	IN
cord-320417-01l27d99	121	13	the	the	DT
cord-320417-01l27d99	121	14	GR	GR	NNP
cord-320417-01l27d99	121	15	and	and	CC
cord-320417-01l27d99	121	16	the	the	DT
cord-320417-01l27d99	121	17	V	v	NN
cord-320417-01l27d99	121	18	clades	clade	NNS
cord-320417-01l27d99	121	19	.	.	.
cord-320417-01l27d99	122	1	No	no	DT
cord-320417-01l27d99	122	2	GH	GH	NNP
cord-320417-01l27d99	122	3	clade	clade	NN
cord-320417-01l27d99	122	4	was	be	VBD
cord-320417-01l27d99	122	5	detected	detect	VBN
cord-320417-01l27d99	122	6	.	.	.
cord-320417-01l27d99	123	1	The	the	DT
cord-320417-01l27d99	123	2	genome	genome	NN
cord-320417-01l27d99	123	3	collection	collection	NN
cord-320417-01l27d99	123	4	from	from	IN
cord-320417-01l27d99	123	5	Italy	Italy	NNP
cord-320417-01l27d99	123	6	had	have	VBD
cord-320417-01l27d99	123	7	24	24	CD
cord-320417-01l27d99	123	8	sequences	sequence	NNS
cord-320417-01l27d99	123	9	with	with	IN
cord-320417-01l27d99	123	10	the	the	DT
cord-320417-01l27d99	123	11	G	g	NN
cord-320417-01l27d99	123	12	clade	clade	NN
cord-320417-01l27d99	123	13	as	as	IN
cord-320417-01l27d99	123	14	the	the	DT
cord-320417-01l27d99	123	15	largest	large	JJS
cord-320417-01l27d99	123	16	cluster	cluster	NN
cord-320417-01l27d99	123	17	,	,	,
cord-320417-01l27d99	123	18	followed	follow	VBN
cord-320417-01l27d99	123	19	by	by	IN
cord-320417-01l27d99	123	20	the	the	DT
cord-320417-01l27d99	123	21	GR	GR	NNP
cord-320417-01l27d99	123	22	and	and	CC
cord-320417-01l27d99	123	23	V	v	NN
cord-320417-01l27d99	123	24	clades	clade	NNS
cord-320417-01l27d99	123	25	.	.	.
cord-320417-01l27d99	124	1	No	no	DT
cord-320417-01l27d99	124	2	GH	GH	NNP
cord-320417-01l27d99	124	3	or	or	CC
cord-320417-01l27d99	124	4	S	S	NNP
cord-320417-01l27d99	124	5	clade	clade	NN
cord-320417-01l27d99	124	6	was	be	VBD
cord-320417-01l27d99	124	7	detected	detect	VBN
cord-320417-01l27d99	124	8	.	.	.
cord-320417-01l27d99	125	1	No	no	DT
cord-320417-01l27d99	125	2	inter	inter	JJ
cord-320417-01l27d99	125	3	-	-	JJ
cord-320417-01l27d99	125	4	clade	clade	JJ
cord-320417-01l27d99	125	5	co	co	NN
cord-320417-01l27d99	125	6	-	-	JJ
cord-320417-01l27d99	125	7	occurring	occur	VBG
cord-320417-01l27d99	125	8	SNP	SNP	NNP
cord-320417-01l27d99	125	9	pairs	pair	NNS
cord-320417-01l27d99	125	10	were	be	VBD
cord-320417-01l27d99	125	11	detected	detect	VBN
cord-320417-01l27d99	125	12	in	in	IN
cord-320417-01l27d99	125	13	genome	genome	NN
cord-320417-01l27d99	125	14	collections	collection	NNS
cord-320417-01l27d99	125	15	from	from	IN
cord-320417-01l27d99	125	16	these	these	DT
cord-320417-01l27d99	125	17	two	two	CD
cord-320417-01l27d99	125	18	countries	country	NNS
cord-320417-01l27d99	125	19	deposited	deposit	VBN
cord-320417-01l27d99	125	20	to	to	IN
cord-320417-01l27d99	125	21	NCBI	NCBI	NNP
cord-320417-01l27d99	125	22	on	on	IN
cord-320417-01l27d99	125	23	September	September	NNP
cord-320417-01l27d99	125	24	2	2	CD
cord-320417-01l27d99	125	25	nd	nd	NNP
cord-320417-01l27d99	125	26	.	.	.
cord-320417-01l27d99	126	1	The	the	DT
cord-320417-01l27d99	126	2	COVID-19	covid-19	CD
cord-320417-01l27d99	126	3	pandemic	pandemic	NN
cord-320417-01l27d99	126	4	caused	cause	VBD
cord-320417-01l27d99	126	5	unprecedented	unprecedented	JJ
cord-320417-01l27d99	126	6	disruption	disruption	NN
cord-320417-01l27d99	126	7	to	to	IN
cord-320417-01l27d99	126	8	populations	population	NNS
cord-320417-01l27d99	126	9	worldwide	worldwide	RB
cord-320417-01l27d99	126	10	.	.	.
cord-320417-01l27d99	127	1	Fighting	fight	VBG
cord-320417-01l27d99	127	2	the	the	DT
cord-320417-01l27d99	127	3	causative	causative	JJ
cord-320417-01l27d99	127	4	agent	agent	NN
cord-320417-01l27d99	127	5	is	be	VBZ
cord-320417-01l27d99	127	6	the	the	DT
cord-320417-01l27d99	127	7	indisputable	indisputable	JJ
cord-320417-01l27d99	127	8	duty	duty	NN
cord-320417-01l27d99	127	9	of	of	IN
cord-320417-01l27d99	127	10	everyone	everyone	NN
cord-320417-01l27d99	127	11	who	who	WP
cord-320417-01l27d99	127	12	has	have	VBZ
cord-320417-01l27d99	127	13	the	the	DT
cord-320417-01l27d99	127	14	relevant	relevant	JJ
cord-320417-01l27d99	127	15	knowledge	knowledge	NN
cord-320417-01l27d99	127	16	and	and	CC
cord-320417-01l27d99	127	17	skills	skill	NNS
cord-320417-01l27d99	127	18	.	.	.
cord-320417-01l27d99	128	1	Sequencing	sequence	VBG
cord-320417-01l27d99	128	2	the	the	DT
cord-320417-01l27d99	128	3	viral	viral	JJ
cord-320417-01l27d99	128	4	genome	genome	NN
cord-320417-01l27d99	128	5	can	can	MD
cord-320417-01l27d99	128	6	help	help	VB
cord-320417-01l27d99	128	7	characterize	characterize	VB
cord-320417-01l27d99	128	8	the	the	DT
cord-320417-01l27d99	128	9	evolutional	evolutional	JJ
cord-320417-01l27d99	128	10	changes	change	NNS
cord-320417-01l27d99	128	11	of	of	IN
cord-320417-01l27d99	128	12	the	the	DT
cord-320417-01l27d99	128	13	virus	virus	NN
cord-320417-01l27d99	128	14	and	and	CC
cord-320417-01l27d99	128	15	help	help	VB
cord-320417-01l27d99	128	16	public	public	JJ
cord-320417-01l27d99	128	17	health	health	NN
cord-320417-01l27d99	128	18	authorities	authority	NNS
cord-320417-01l27d99	128	19	understand	understand	VBP
cord-320417-01l27d99	128	20	the	the	DT
cord-320417-01l27d99	128	21	identity	identity	NN
cord-320417-01l27d99	128	22	,	,	,
cord-320417-01l27d99	128	23	whether	whether	IN
cord-320417-01l27d99	128	24	it	-PRON-	PRP
cord-320417-01l27d99	128	25	is	be	VBZ
cord-320417-01l27d99	128	26	changing	change	VBG
cord-320417-01l27d99	128	27	,	,	,
cord-320417-01l27d99	128	28	and	and	CC
cord-320417-01l27d99	128	29	how	how	WRB
cord-320417-01l27d99	128	30	it	-PRON-	PRP
cord-320417-01l27d99	128	31	is	be	VBZ
cord-320417-01l27d99	128	32	being	be	VBG
cord-320417-01l27d99	128	33	transmitted	transmit	VBN
cord-320417-01l27d99	128	34	.	.	.
cord-320417-01l27d99	129	1	I	-PRON-	PRP
cord-320417-01l27d99	129	2	procured	procure	VBD
cord-320417-01l27d99	129	3	a	a	DT
cord-320417-01l27d99	129	4	MinION	minion	NN
cord-320417-01l27d99	129	5	device	device	NN
cord-320417-01l27d99	129	6	in	in	IN
cord-320417-01l27d99	129	7	January	January	NNP
cord-320417-01l27d99	129	8	originally	originally	RB
cord-320417-01l27d99	129	9	for	for	IN
cord-320417-01l27d99	129	10	another	another	DT
cord-320417-01l27d99	129	11	sequencing	sequencing	NN
cord-320417-01l27d99	129	12	project	project	NN
cord-320417-01l27d99	129	13	.	.	.
cord-320417-01l27d99	130	1	My	-PRON-	PRP$
cord-320417-01l27d99	130	2	experiences	experience	NNS
cord-320417-01l27d99	130	3	learned	learn	VBD
cord-320417-01l27d99	130	4	during	during	IN
cord-320417-01l27d99	130	5	this	this	DT
cord-320417-01l27d99	130	6	project	project	NN
cord-320417-01l27d99	130	7	are	be	VBP
cord-320417-01l27d99	130	8	worth	worth	JJ
cord-320417-01l27d99	130	9	further	further	JJ
cord-320417-01l27d99	130	10	discussions	discussion	NNS
cord-320417-01l27d99	130	11	.	.	.
cord-320417-01l27d99	131	1	I	-PRON-	PRP
cord-320417-01l27d99	131	2	will	will	MD
cord-320417-01l27d99	131	3	mainly	mainly	RB
cord-320417-01l27d99	131	4	focus	focus	VB
cord-320417-01l27d99	131	5	on	on	IN
cord-320417-01l27d99	131	6	the	the	DT
cord-320417-01l27d99	131	7	following	following	JJ
cord-320417-01l27d99	131	8	four	four	CD
cord-320417-01l27d99	131	9	topics	topic	NNS
cord-320417-01l27d99	131	10	:	:	:
cord-320417-01l27d99	131	11	the	the	DT
cord-320417-01l27d99	131	12	use	use	NN
cord-320417-01l27d99	131	13	of	of	IN
cord-320417-01l27d99	131	14	nanopore	nanopore	NNP
cord-320417-01l27d99	131	15	sequencing	sequencing	NN
cord-320417-01l27d99	131	16	technology	technology	NN
cord-320417-01l27d99	131	17	,	,	,
cord-320417-01l27d99	131	18	pros	pro	NNS
cord-320417-01l27d99	131	19	and	and	CC
cord-320417-01l27d99	131	20	cons	con	NNS
cord-320417-01l27d99	131	21	of	of	IN
cord-320417-01l27d99	131	22	the	the	DT
cord-320417-01l27d99	131	23	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	131	24	analysis	analysis	NN
cord-320417-01l27d99	131	25	,	,	,
cord-320417-01l27d99	131	26	homologous	homologous	JJ
cord-320417-01l27d99	131	27	genetic	genetic	JJ
cord-320417-01l27d99	131	28	recombination	recombination	NN
cord-320417-01l27d99	131	29	,	,	,
cord-320417-01l27d99	131	30	and	and	CC
cord-320417-01l27d99	131	31	the	the	DT
cord-320417-01l27d99	131	32	quasispecies	quasispecies	NNP
cord-320417-01l27d99	131	33	model	model	NN
cord-320417-01l27d99	131	34	of	of	IN
cord-320417-01l27d99	131	35	RNA	RNA	NNP
cord-320417-01l27d99	131	36	viruses	virus	NNS
cord-320417-01l27d99	131	37	.	.	.
cord-320417-01l27d99	132	1	Oxford	Oxford	NNP
cord-320417-01l27d99	132	2	Nanopore	Nanopore	NNP
cord-320417-01l27d99	132	3	Technology	Technology	NNP
cord-320417-01l27d99	132	4	gained	gain	VBD
cord-320417-01l27d99	132	5	attention	attention	NN
cord-320417-01l27d99	132	6	for	for	IN
cord-320417-01l27d99	132	7	its	-PRON-	PRP$
cord-320417-01l27d99	132	8	long	long	JJ
cord-320417-01l27d99	132	9	-	-	HYPH
cord-320417-01l27d99	132	10	reading	read	VBG
cord-320417-01l27d99	132	11	sequencing	sequencing	NN
cord-320417-01l27d99	132	12	technology	technology	NN
cord-320417-01l27d99	132	13	,	,	,
cord-320417-01l27d99	132	14	low	low	JJ
cord-320417-01l27d99	132	15	cost	cost	NN
cord-320417-01l27d99	132	16	,	,	,
cord-320417-01l27d99	132	17	and	and	CC
cord-320417-01l27d99	132	18	portable	portable	JJ
cord-320417-01l27d99	132	19	capability	capability	NN
cord-320417-01l27d99	132	20	.	.	.
cord-320417-01l27d99	133	1	Many	many	JJ
cord-320417-01l27d99	133	2	researchers	researcher	NNS
cord-320417-01l27d99	133	3	are	be	VBP
cord-320417-01l27d99	133	4	using	use	VBG
cord-320417-01l27d99	133	5	the	the	DT
cord-320417-01l27d99	133	6	MinION	minion	NN
cord-320417-01l27d99	133	7	device	device	NN
cord-320417-01l27d99	133	8	(	(	-LRB-
cord-320417-01l27d99	133	9	costing	cost	VBG
cord-320417-01l27d99	133	10	$	$	$
cord-320417-01l27d99	133	11	1,000	1,000	CD
cord-320417-01l27d99	133	12	)	)	-RRB-
cord-320417-01l27d99	133	13	as	as	IN
cord-320417-01l27d99	133	14	basic	basic	JJ
cord-320417-01l27d99	133	15	laboratory	laboratory	NN
cord-320417-01l27d99	133	16	equipment	equipment	NN
cord-320417-01l27d99	133	17	for	for	IN
cord-320417-01l27d99	133	18	high	high	JJ
cord-320417-01l27d99	133	19	-	-	HYPH
cord-320417-01l27d99	133	20	throughput	throughput	NN
cord-320417-01l27d99	133	21	sequencing	sequencing	NN
cord-320417-01l27d99	133	22	needs	need	NNS
cord-320417-01l27d99	133	23	.	.	.
cord-320417-01l27d99	134	1	The	the	DT
cord-320417-01l27d99	134	2	system	system	NN
cord-320417-01l27d99	134	3	has	have	VBZ
cord-320417-01l27d99	134	4	been	be	VBN
cord-320417-01l27d99	134	5	previously	previously	RB
cord-320417-01l27d99	134	6	used	use	VBN
cord-320417-01l27d99	134	7	in	in	IN
cord-320417-01l27d99	134	8	other	other	JJ
cord-320417-01l27d99	134	9	outbreak	outbreak	NN
cord-320417-01l27d99	134	10	situations	situation	NNS
cord-320417-01l27d99	134	11	,	,	,
cord-320417-01l27d99	134	12	such	such	JJ
cord-320417-01l27d99	134	13	as	as	IN
cord-320417-01l27d99	134	14	EBOV	EBOV	NNP
cord-320417-01l27d99	134	15	18	18	CD
cord-320417-01l27d99	134	16	and	and	CC
cord-320417-01l27d99	134	17	ZIKV	ZIKV	NNP
cord-320417-01l27d99	134	18	19	19	CD
cord-320417-01l27d99	134	19	.	.	.
cord-320417-01l27d99	135	1	Early	early	RB
cord-320417-01l27d99	135	2	in	in	IN
cord-320417-01l27d99	135	3	March	March	NNP
cord-320417-01l27d99	135	4	,	,	,
cord-320417-01l27d99	135	5	the	the	DT
cord-320417-01l27d99	135	6	ARTIC	ARTIC	NNP
cord-320417-01l27d99	135	7	network	network	NN
cord-320417-01l27d99	135	8	opened	open	VBD
cord-320417-01l27d99	135	9	a	a	DT
cord-320417-01l27d99	135	10	specific	specific	JJ
cord-320417-01l27d99	135	11	sequencing	sequencing	NN
cord-320417-01l27d99	135	12	protocol	protocol	NN
cord-320417-01l27d99	135	13	for	for	IN
cord-320417-01l27d99	135	14	COVID-19	COVID-19	NNP
cord-320417-01l27d99	135	15	,	,	,
cord-320417-01l27d99	135	16	including	include	VBG
cord-320417-01l27d99	135	17	a	a	DT
cord-320417-01l27d99	135	18	set	set	NN
cord-320417-01l27d99	135	19	of	of	IN
cord-320417-01l27d99	135	20	primers	primer	NNS
cord-320417-01l27d99	135	21	,	,	,
cord-320417-01l27d99	135	22	laboratory	laboratory	NN
cord-320417-01l27d99	135	23	materials	material	NNS
cord-320417-01l27d99	135	24	,	,	,
cord-320417-01l27d99	135	25	and	and	CC
cord-320417-01l27d99	135	26	related	related	JJ
cord-320417-01l27d99	135	27	tools	tool	NNS
cord-320417-01l27d99	135	28	for	for	IN
cord-320417-01l27d99	135	29	bioinformatics	bioinformatics	NN
cord-320417-01l27d99	135	30	analyses	analysis	NNS
cord-320417-01l27d99	135	31	.	.	.
cord-320417-01l27d99	136	1	The	the	DT
cord-320417-01l27d99	136	2	protocol	protocol	NN
cord-320417-01l27d99	136	3	relies	rely	VBZ
cord-320417-01l27d99	136	4	on	on	IN
cord-320417-01l27d99	136	5	direct	direct	JJ
cord-320417-01l27d99	136	6	amplification	amplification	NN
cord-320417-01l27d99	136	7	of	of	IN
cord-320417-01l27d99	136	8	the	the	DT
cord-320417-01l27d99	136	9	virus	virus	NN
cord-320417-01l27d99	136	10	using	use	VBG
cord-320417-01l27d99	136	11	tiled	tile	VBN
cord-320417-01l27d99	136	12	and	and	CC
cord-320417-01l27d99	136	13	multiplexed	multiplexed	JJ
cord-320417-01l27d99	136	14	primers	primer	NNS
cord-320417-01l27d99	136	15	,	,	,
cord-320417-01l27d99	136	16	and	and	CC
cord-320417-01l27d99	136	17	it	-PRON-	PRP
cord-320417-01l27d99	136	18	has	have	VBZ
cord-320417-01l27d99	136	19	been	be	VBN
cord-320417-01l27d99	136	20	widely	widely	RB
cord-320417-01l27d99	136	21	adopted	adopt	VBN
cord-320417-01l27d99	136	22	by	by	IN
cord-320417-01l27d99	136	23	many	many	JJ
cord-320417-01l27d99	136	24	groups	group	NNS
cord-320417-01l27d99	136	25	around	around	IN
cord-320417-01l27d99	136	26	the	the	DT
cord-320417-01l27d99	136	27	world	world	NN
cord-320417-01l27d99	136	28	20,21	20,21	CD
cord-320417-01l27d99	136	29	.	.	.
cord-320417-01l27d99	137	1	The	the	DT
cord-320417-01l27d99	137	2	cost	cost	NN
cord-320417-01l27d99	137	3	of	of	IN
cord-320417-01l27d99	137	4	two	two	CD
cord-320417-01l27d99	137	5	flowcells	flowcell	NNS
cord-320417-01l27d99	137	6	(	(	-LRB-
cord-320417-01l27d99	137	7	>	>	NFP
cord-320417-01l27d99	137	8	$	$	$
cord-320417-01l27d99	137	9	500	500	CD
cord-320417-01l27d99	137	10	/	/	SYM
cord-320417-01l27d99	137	11	each	each	DT
cord-320417-01l27d99	137	12	)	)	-RRB-
cord-320417-01l27d99	137	13	and	and	CC
cord-320417-01l27d99	137	14	other	other	JJ
cord-320417-01l27d99	137	15	reagents	reagent	NNS
cord-320417-01l27d99	137	16	is	be	VBZ
cord-320417-01l27d99	137	17	about	about	IN
cord-320417-01l27d99	137	18	$	$	$
cord-320417-01l27d99	137	19	2,000	2,000	CD
cord-320417-01l27d99	137	20	.	.	.
cord-320417-01l27d99	138	1	A	a	DT
cord-320417-01l27d99	138	2	rough	rough	JJ
cord-320417-01l27d99	138	3	estimation	estimation	NN
cord-320417-01l27d99	138	4	of	of	IN
cord-320417-01l27d99	138	5	the	the	DT
cord-320417-01l27d99	138	6	material	material	NN
cord-320417-01l27d99	138	7	cost	cost	NN
cord-320417-01l27d99	138	8	per	per	IN
cord-320417-01l27d99	138	9	sample	sample	NN
cord-320417-01l27d99	138	10	is	be	VBZ
cord-320417-01l27d99	138	11	about	about	IN
cord-320417-01l27d99	138	12	$	$	$
cord-320417-01l27d99	138	13	20~$30	20~$30	CD
cord-320417-01l27d99	138	14	.	.	.
cord-320417-01l27d99	139	1	The	the	DT
cord-320417-01l27d99	139	2	bottleneck	bottleneck	NN
cord-320417-01l27d99	139	3	for	for	IN
cord-320417-01l27d99	139	4	the	the	DT
cord-320417-01l27d99	139	5	study	study	NN
cord-320417-01l27d99	139	6	is	be	VBZ
cord-320417-01l27d99	139	7	preparing	prepare	VBG
cord-320417-01l27d99	139	8	the	the	DT
cord-320417-01l27d99	139	9	library	library	NN
cord-320417-01l27d99	139	10	before	before	IN
cord-320417-01l27d99	139	11	sequencing	sequence	VBG
cord-320417-01l27d99	139	12	.	.	.
cord-320417-01l27d99	140	1	It	-PRON-	PRP
cord-320417-01l27d99	140	2	took	take	VBD
cord-320417-01l27d99	140	3	me	-PRON-	PRP
cord-320417-01l27d99	140	4	a	a	DT
cord-320417-01l27d99	140	5	whole	whole	JJ
cord-320417-01l27d99	140	6	week	week	NN
cord-320417-01l27d99	140	7	to	to	TO
cord-320417-01l27d99	140	8	prepare	prepare	VB
cord-320417-01l27d99	140	9	103	103	CD
cord-320417-01l27d99	140	10	samples	sample	NNS
cord-320417-01l27d99	140	11	,	,	,
cord-320417-01l27d99	140	12	which	which	WDT
cord-320417-01l27d99	140	13	were	be	VBD
cord-320417-01l27d99	140	14	all	all	DT
cord-320417-01l27d99	140	15	processed	process	VBN
cord-320417-01l27d99	140	16	manually	manually	RB
cord-320417-01l27d99	140	17	.	.	.
cord-320417-01l27d99	141	1	I	-PRON-	PRP
cord-320417-01l27d99	141	2	made	make	VBD
cord-320417-01l27d99	141	3	some	some	DT
cord-320417-01l27d99	141	4	mistakes	mistake	NNS
cord-320417-01l27d99	141	5	due	due	IN
cord-320417-01l27d99	141	6	to	to	IN
cord-320417-01l27d99	141	7	a	a	DT
cord-320417-01l27d99	141	8	lack	lack	NN
cord-320417-01l27d99	141	9	of	of	IN
cord-320417-01l27d99	141	10	experience	experience	NN
cord-320417-01l27d99	141	11	,	,	,
cord-320417-01l27d99	141	12	so	so	RB
cord-320417-01l27d99	141	13	only	only	RB
cord-320417-01l27d99	141	14	85	85	CD
cord-320417-01l27d99	141	15	consensus	consensus	NN
cord-320417-01l27d99	141	16	sequences	sequence	NNS
cord-320417-01l27d99	141	17	were	be	VBD
cord-320417-01l27d99	141	18	finally	finally	RB
cord-320417-01l27d99	141	19	achieved	achieve	VBN
cord-320417-01l27d99	141	20	.	.	.
cord-320417-01l27d99	142	1	The	the	DT
cord-320417-01l27d99	142	2	library	library	NN
cord-320417-01l27d99	142	3	preparation	preparation	NN
cord-320417-01l27d99	142	4	process	process	NN
cord-320417-01l27d99	142	5	can	can	MD
cord-320417-01l27d99	142	6	be	be	VB
cord-320417-01l27d99	142	7	easily	easily	RB
cord-320417-01l27d99	142	8	scaled	scale	VBN
cord-320417-01l27d99	142	9	up	up	RP
cord-320417-01l27d99	142	10	with	with	IN
cord-320417-01l27d99	142	11	a	a	DT
cord-320417-01l27d99	142	12	liquid	liquid	JJ
cord-320417-01l27d99	142	13	handling	handling	NN
cord-320417-01l27d99	142	14	robot	robot	NN
cord-320417-01l27d99	142	15	.	.	.
cord-320417-01l27d99	143	1	With	with	IN
cord-320417-01l27d99	143	2	1~2	1~2	CD
cord-320417-01l27d99	143	3	hours	hour	NNS
cord-320417-01l27d99	143	4	of	of	IN
cord-320417-01l27d99	143	5	data	datum	NNS
cord-320417-01l27d99	143	6	acquisition	acquisition	NN
cord-320417-01l27d99	143	7	,	,	,
cord-320417-01l27d99	143	8	the	the	DT
cord-320417-01l27d99	143	9	MinION	minion	NN
cord-320417-01l27d99	143	10	device	device	NN
cord-320417-01l27d99	143	11	usually	usually	RB
cord-320417-01l27d99	143	12	generates	generate	VBZ
cord-320417-01l27d99	143	13	one	one	CD
cord-320417-01l27d99	143	14	million	million	CD
cord-320417-01l27d99	143	15	reads	read	NNS
cord-320417-01l27d99	143	16	,	,	,
cord-320417-01l27d99	143	17	enough	enough	JJ
cord-320417-01l27d99	143	18	to	to	TO
cord-320417-01l27d99	143	19	provide	provide	VB
cord-320417-01l27d99	143	20	results	result	NNS
cord-320417-01l27d99	143	21	for	for	IN
cord-320417-01l27d99	143	22	collecting	collect	VBG
cord-320417-01l27d99	143	23	final	final	JJ
cord-320417-01l27d99	143	24	consensus	consensus	NN
cord-320417-01l27d99	143	25	sequences	sequence	NNS
cord-320417-01l27d99	143	26	.	.	.
cord-320417-01l27d99	144	1	The	the	DT
cord-320417-01l27d99	144	2	feature	feature	NN
cord-320417-01l27d99	144	3	of	of	IN
cord-320417-01l27d99	144	4	live	live	NN
cord-320417-01l27d99	144	5	-	-	HYPH
cord-320417-01l27d99	144	6	basecalling	basecalling	NN
cord-320417-01l27d99	144	7	is	be	VBZ
cord-320417-01l27d99	144	8	necessary	necessary	JJ
cord-320417-01l27d99	144	9	when	when	WRB
cord-320417-01l27d99	144	10	using	use	VBG
cord-320417-01l27d99	144	11	the	the	DT
cord-320417-01l27d99	144	12	RAMPART	RAMPART	NNP
cord-320417-01l27d99	144	13	tool	tool	NN
cord-320417-01l27d99	144	14	22	22	CD
cord-320417-01l27d99	144	15	to	to	TO
cord-320417-01l27d99	144	16	monitor	monitor	VB
cord-320417-01l27d99	144	17	the	the	DT
cord-320417-01l27d99	144	18	on	on	RB
cord-320417-01l27d99	144	19	-	-	HYPH
cord-320417-01l27d99	144	20	going	go	VBG
cord-320417-01l27d99	144	21	progress	progress	NN
cord-320417-01l27d99	144	22	during	during	IN
cord-320417-01l27d99	144	23	sampling	sampling	NN
cord-320417-01l27d99	144	24	and	and	CC
cord-320417-01l27d99	144	25	to	to	TO
cord-320417-01l27d99	144	26	check	check	VB
cord-320417-01l27d99	144	27	whether	whether	IN
cord-320417-01l27d99	144	28	all	all	DT
cord-320417-01l27d99	144	29	amplicons	amplicon	NNS
cord-320417-01l27d99	144	30	have	have	VBP
cord-320417-01l27d99	144	31	been	be	VBN
cord-320417-01l27d99	144	32	sampled	sample	VBN
cord-320417-01l27d99	144	33	.	.	.
cord-320417-01l27d99	145	1	The	the	DT
cord-320417-01l27d99	145	2	final	final	JJ
cord-320417-01l27d99	145	3	stage	stage	NN
cord-320417-01l27d99	145	4	for	for	IN
cord-320417-01l27d99	145	5	bioinformatics	bioinformatics	NN
cord-320417-01l27d99	145	6	analysis	analysis	NN
cord-320417-01l27d99	145	7	was	be	VBD
cord-320417-01l27d99	145	8	handled	handle	VBN
cord-320417-01l27d99	145	9	by	by	IN
cord-320417-01l27d99	145	10	the	the	DT
cord-320417-01l27d99	145	11	nextflow	nextflow	NN
cord-320417-01l27d99	146	1	COVID-19	COVID-19	NNP
cord-320417-01l27d99	146	2	workflow	workflow	NN
cord-320417-01l27d99	146	3	that	that	WDT
cord-320417-01l27d99	146	4	includes	include	VBZ
cord-320417-01l27d99	146	5	read	read	NN
cord-320417-01l27d99	146	6	-	-	HYPH
cord-320417-01l27d99	146	7	quality	quality	NN
cord-320417-01l27d99	146	8	score	score	NN
cord-320417-01l27d99	146	9	filtering	filtering	NN
cord-320417-01l27d99	146	10	,	,	,
cord-320417-01l27d99	146	11	reference	reference	NN
cord-320417-01l27d99	146	12	alignment	alignment	NN
cord-320417-01l27d99	146	13	,	,	,
cord-320417-01l27d99	146	14	and	and	CC
cord-320417-01l27d99	146	15	consensus	consensus	NN
cord-320417-01l27d99	146	16	sequence	sequence	NN
cord-320417-01l27d99	146	17	generation	generation	NN
cord-320417-01l27d99	146	18	,	,	,
cord-320417-01l27d99	146	19	which	which	WDT
cord-320417-01l27d99	146	20	only	only	RB
cord-320417-01l27d99	146	21	takes	take	VBZ
cord-320417-01l27d99	146	22	about	about	RB
cord-320417-01l27d99	146	23	twenty	twenty	CD
cord-320417-01l27d99	146	24	minutes	minute	NNS
cord-320417-01l27d99	146	25	.	.	.
cord-320417-01l27d99	147	1	This	this	DT
cord-320417-01l27d99	147	2	low	low	JJ
cord-320417-01l27d99	147	3	cost	cost	NN
cord-320417-01l27d99	147	4	,	,	,
cord-320417-01l27d99	147	5	decentralized	decentralized	JJ
cord-320417-01l27d99	147	6	sequencing	sequencing	NN
cord-320417-01l27d99	147	7	can	can	MD
cord-320417-01l27d99	147	8	be	be	VB
cord-320417-01l27d99	147	9	set	set	VBN
cord-320417-01l27d99	147	10	up	up	RP
cord-320417-01l27d99	147	11	quickly	quickly	RB
cord-320417-01l27d99	147	12	for	for	IN
cord-320417-01l27d99	147	13	flexible	flexible	JJ
cord-320417-01l27d99	147	14	,	,	,
cord-320417-01l27d99	147	15	portable	portable	JJ
cord-320417-01l27d99	147	16	,	,	,
cord-320417-01l27d99	147	17	and	and	CC
cord-320417-01l27d99	147	18	scalable	scalable	JJ
cord-320417-01l27d99	147	19	applications	application	NNS
cord-320417-01l27d99	147	20	.	.	.
cord-320417-01l27d99	148	1	A	a	DT
cord-320417-01l27d99	148	2	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	148	3	tree	tree	NN
cord-320417-01l27d99	148	4	is	be	VBZ
cord-320417-01l27d99	148	5	a	a	DT
cord-320417-01l27d99	148	6	diagram	diagram	NN
cord-320417-01l27d99	148	7	used	use	VBN
cord-320417-01l27d99	148	8	to	to	TO
cord-320417-01l27d99	148	9	illustrate	illustrate	VB
cord-320417-01l27d99	148	10	phylogeny	phylogeny	NN
cord-320417-01l27d99	148	11	,	,	,
cord-320417-01l27d99	148	12	the	the	DT
cord-320417-01l27d99	148	13	history	history	NN
cord-320417-01l27d99	148	14	of	of	IN
cord-320417-01l27d99	148	15	evolution	evolution	NN
cord-320417-01l27d99	148	16	,	,	,
cord-320417-01l27d99	148	17	in	in	IN
cord-320417-01l27d99	148	18	reference	reference	NN
cord-320417-01l27d99	148	19	to	to	IN
cord-320417-01l27d99	148	20	lines	line	NNS
cord-320417-01l27d99	148	21	of	of	IN
cord-320417-01l27d99	148	22	descent	descent	NN
cord-320417-01l27d99	148	23	and	and	CC
cord-320417-01l27d99	148	24	relationships	relationship	NNS
cord-320417-01l27d99	148	25	among	among	IN
cord-320417-01l27d99	148	26	broad	broad	JJ
cord-320417-01l27d99	148	27	groups	group	NNS
cord-320417-01l27d99	148	28	of	of	IN
cord-320417-01l27d99	148	29	organisms	organism	NNS
cord-320417-01l27d99	148	30	.	.	.
cord-320417-01l27d99	149	1	The	the	DT
cord-320417-01l27d99	149	2	branching	branch	VBG
cord-320417-01l27d99	149	3	patterns	pattern	NNS
cord-320417-01l27d99	149	4	in	in	IN
cord-320417-01l27d99	149	5	a	a	DT
cord-320417-01l27d99	149	6	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	149	7	tree	tree	NN
cord-320417-01l27d99	149	8	reflect	reflect	VBP
cord-320417-01l27d99	149	9	how	how	WRB
cord-320417-01l27d99	149	10	species	specie	NNS
cord-320417-01l27d99	149	11	or	or	CC
cord-320417-01l27d99	149	12	other	other	JJ
cord-320417-01l27d99	149	13	groups	group	NNS
cord-320417-01l27d99	149	14	evolved	evolve	VBD
cord-320417-01l27d99	149	15	from	from	IN
cord-320417-01l27d99	149	16	a	a	DT
cord-320417-01l27d99	149	17	common	common	JJ
cord-320417-01l27d99	149	18	ancestor	ancestor	NN
cord-320417-01l27d99	149	19	.	.	.
cord-320417-01l27d99	150	1	The	the	DT
cord-320417-01l27d99	150	2	methodology	methodology	NN
cord-320417-01l27d99	150	3	has	have	VBZ
cord-320417-01l27d99	150	4	been	be	VBN
cord-320417-01l27d99	150	5	used	use	VBN
cord-320417-01l27d99	150	6	increasingly	increasingly	RB
cord-320417-01l27d99	150	7	in	in	IN
cord-320417-01l27d99	150	8	diverse	diverse	JJ
cord-320417-01l27d99	150	9	areas	area	NNS
cord-320417-01l27d99	150	10	of	of	IN
cord-320417-01l27d99	150	11	biological	biological	JJ
cord-320417-01l27d99	150	12	science	science	NN
cord-320417-01l27d99	150	13	,	,	,
cord-320417-01l27d99	150	14	especially	especially	RB
cord-320417-01l27d99	150	15	for	for	IN
cord-320417-01l27d99	150	16	tracing	trace	VBG
cord-320417-01l27d99	150	17	viral	viral	JJ
cord-320417-01l27d99	150	18	evolution	evolution	NN
cord-320417-01l27d99	150	19	at	at	IN
cord-320417-01l27d99	150	20	the	the	DT
cord-320417-01l27d99	150	21	early	early	JJ
cord-320417-01l27d99	150	22	stages	stage	NNS
cord-320417-01l27d99	150	23	of	of	IN
cord-320417-01l27d99	150	24	the	the	DT
cord-320417-01l27d99	150	25	outbreak	outbreak	NN
cord-320417-01l27d99	150	26	in	in	IN
cord-320417-01l27d99	150	27	an	an	DT
cord-320417-01l27d99	150	28	epidemic	epidemic	NN
cord-320417-01l27d99	150	29	like	like	IN
cord-320417-01l27d99	150	30	COVID-19	COVID-19	NNP
cord-320417-01l27d99	150	31	3,21,23,24	3,21,23,24	CD
cord-320417-01l27d99	150	32	.	.	.
cord-320417-01l27d99	151	1	However	however	RB
cord-320417-01l27d99	151	2	,	,	,
cord-320417-01l27d99	151	3	there	there	EX
cord-320417-01l27d99	151	4	are	be	VBP
cord-320417-01l27d99	151	5	inherent	inherent	JJ
cord-320417-01l27d99	151	6	limitations	limitation	NNS
cord-320417-01l27d99	151	7	to	to	IN
cord-320417-01l27d99	151	8	a	a	DT
cord-320417-01l27d99	151	9	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	151	10	tree	tree	NN
cord-320417-01l27d99	151	11	.	.	.
cord-320417-01l27d99	152	1	First	first	RB
cord-320417-01l27d99	152	2	,	,	,
cord-320417-01l27d99	152	3	traditional	traditional	JJ
cord-320417-01l27d99	152	4	methods	method	NNS
cord-320417-01l27d99	152	5	of	of	IN
cord-320417-01l27d99	152	6	phylogeny	phylogeny	NN
cord-320417-01l27d99	152	7	estimation	estimation	NN
cord-320417-01l27d99	152	8	,	,	,
cord-320417-01l27d99	152	9	such	such	JJ
cord-320417-01l27d99	152	10	as	as	IN
cord-320417-01l27d99	152	11	maximum	maximum	JJ
cord-320417-01l27d99	152	12	parsimony	parsimony	NN
cord-320417-01l27d99	152	13	,	,	,
cord-320417-01l27d99	152	14	minimum	minimum	JJ
cord-320417-01l27d99	152	15	evolution	evolution	NN
cord-320417-01l27d99	152	16	,	,	,
cord-320417-01l27d99	152	17	or	or	CC
cord-320417-01l27d99	152	18	maximum	maximum	JJ
cord-320417-01l27d99	152	19	likelihood	likelihood	NN
cord-320417-01l27d99	152	20	,	,	,
cord-320417-01l27d99	152	21	all	all	DT
cord-320417-01l27d99	152	22	assume	assume	VBP
cord-320417-01l27d99	152	23	that	that	IN
cord-320417-01l27d99	152	24	a	a	DT
cord-320417-01l27d99	152	25	single	single	JJ
cord-320417-01l27d99	152	26	evolutionary	evolutionary	JJ
cord-320417-01l27d99	152	27	history	history	NN
cord-320417-01l27d99	152	28	underlies	underlie	VBZ
cord-320417-01l27d99	152	29	the	the	DT
cord-320417-01l27d99	152	30	sequences	sequence	NNS
cord-320417-01l27d99	152	31	.	.	.
cord-320417-01l27d99	153	1	Second	second	RB
cord-320417-01l27d99	153	2	,	,	,
cord-320417-01l27d99	153	3	the	the	DT
cord-320417-01l27d99	153	4	viral	viral	JJ
cord-320417-01l27d99	153	5	network	network	NN
cord-320417-01l27d99	153	6	presented	present	VBN
cord-320417-01l27d99	153	7	in	in	IN
cord-320417-01l27d99	153	8	the	the	DT
cord-320417-01l27d99	153	9	tree	tree	NN
cord-320417-01l27d99	153	10	diagram	diagram	NN
cord-320417-01l27d99	153	11	is	be	VBZ
cord-320417-01l27d99	153	12	merely	merely	RB
cord-320417-01l27d99	153	13	a	a	DT
cord-320417-01l27d99	153	14	snapshot	snapshot	NN
cord-320417-01l27d99	153	15	of	of	IN
cord-320417-01l27d99	153	16	the	the	DT
cord-320417-01l27d99	153	17	early	early	JJ
cord-320417-01l27d99	153	18	stage	stage	NN
cord-320417-01l27d99	153	19	of	of	IN
cord-320417-01l27d99	153	20	the	the	DT
cord-320417-01l27d99	153	21	viral	viral	JJ
cord-320417-01l27d99	153	22	spreading	spread	VBG
cord-320417-01l27d99	153	23	before	before	IN
cord-320417-01l27d99	153	24	the	the	DT
cord-320417-01l27d99	153	25	phylogeny	phylogeny	NN
cord-320417-01l27d99	153	26	becomes	become	VBZ
cord-320417-01l27d99	153	27	obscured	obscure	VBN
cord-320417-01l27d99	153	28	by	by	IN
cord-320417-01l27d99	153	29	subsequent	subsequent	JJ
cord-320417-01l27d99	153	30	migration	migration	NN
cord-320417-01l27d99	153	31	and	and	CC
cord-320417-01l27d99	153	32	mutation	mutation	NN
cord-320417-01l27d99	153	33	.	.	.
cord-320417-01l27d99	154	1	When	when	WRB
cord-320417-01l27d99	154	2	the	the	DT
cord-320417-01l27d99	154	3	number	number	NN
cord-320417-01l27d99	154	4	of	of	IN
cord-320417-01l27d99	154	5	species	specie	NNS
cord-320417-01l27d99	154	6	in	in	IN
cord-320417-01l27d99	154	7	the	the	DT
cord-320417-01l27d99	154	8	group	group	NN
cord-320417-01l27d99	154	9	increases	increase	NNS
cord-320417-01l27d99	154	10	,	,	,
cord-320417-01l27d99	154	11	drawing	draw	VBG
cord-320417-01l27d99	154	12	a	a	DT
cord-320417-01l27d99	154	13	tree	tree	NN
cord-320417-01l27d99	154	14	diagram	diagram	NN
cord-320417-01l27d99	154	15	becomes	become	VBZ
cord-320417-01l27d99	154	16	impractical	impractical	JJ
cord-320417-01l27d99	154	17	.	.	.
cord-320417-01l27d99	155	1	Third	third	RB
cord-320417-01l27d99	155	2	,	,	,
cord-320417-01l27d99	155	3	commonly	commonly	RB
cord-320417-01l27d99	155	4	used	use	VBN
cord-320417-01l27d99	155	5	methods	method	NNS
cord-320417-01l27d99	155	6	in	in	IN
cord-320417-01l27d99	155	7	phylogeny	phylogeny	NN
cord-320417-01l27d99	155	8	,	,	,
cord-320417-01l27d99	155	9	such	such	JJ
cord-320417-01l27d99	155	10	as	as	IN
cord-320417-01l27d99	155	11	the	the	DT
cord-320417-01l27d99	155	12	pairwise	pairwise	JJ
cord-320417-01l27d99	155	13	distance	distance	NN
cord-320417-01l27d99	155	14	method	method	NN
cord-320417-01l27d99	155	15	,	,	,
cord-320417-01l27d99	155	16	do	do	VBP
cord-320417-01l27d99	155	17	not	not	RB
cord-320417-01l27d99	155	18	capture	capture	VB
cord-320417-01l27d99	155	19	the	the	DT
cord-320417-01l27d99	155	20	effects	effect	NNS
cord-320417-01l27d99	155	21	of	of	IN
cord-320417-01l27d99	155	22	homologous	homologous	JJ
cord-320417-01l27d99	155	23	recombination	recombination	NN
cord-320417-01l27d99	155	24	that	that	WDT
cord-320417-01l27d99	155	25	imply	imply	VBP
cord-320417-01l27d99	155	26	how	how	WRB
cord-320417-01l27d99	155	27	different	different	JJ
cord-320417-01l27d99	155	28	parts	part	NNS
cord-320417-01l27d99	155	29	of	of	IN
cord-320417-01l27d99	155	30	the	the	DT
cord-320417-01l27d99	155	31	sequence	sequence	NN
cord-320417-01l27d99	155	32	could	could	MD
cord-320417-01l27d99	155	33	have	have	VB
cord-320417-01l27d99	155	34	separate	separate	JJ
cord-320417-01l27d99	155	35	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	155	36	histories	history	NNS
cord-320417-01l27d99	155	37	and	and	CC
cord-320417-01l27d99	155	38	are	be	VBP
cord-320417-01l27d99	155	39	not	not	RB
cord-320417-01l27d99	155	40	related	relate	VBN
cord-320417-01l27d99	155	41	by	by	IN
cord-320417-01l27d99	155	42	a	a	DT
cord-320417-01l27d99	155	43	single	single	JJ
cord-320417-01l27d99	155	44	phylogenetic	phylogenetic	NN
cord-320417-01l27d99	155	45	tree	tree	NN
cord-320417-01l27d99	155	46	25	25	CD
cord-320417-01l27d99	155	47	.	.	.
cord-320417-01l27d99	156	1	Though	though	IN
cord-320417-01l27d99	156	2	the	the	DT
cord-320417-01l27d99	156	3	ability	ability	NN
cord-320417-01l27d99	156	4	to	to	TO
cord-320417-01l27d99	156	5	detect	detect	VB
cord-320417-01l27d99	156	6	recombination	recombination	NN
cord-320417-01l27d99	156	7	is	be	VBZ
cord-320417-01l27d99	156	8	limited	limit	VBN
cord-320417-01l27d99	156	9	,	,	,
cord-320417-01l27d99	156	10	ignoring	ignore	VBG
cord-320417-01l27d99	156	11	recombination	recombination	NN
cord-320417-01l27d99	156	12	in	in	IN
cord-320417-01l27d99	156	13	tree	tree	NN
cord-320417-01l27d99	156	14	-	-	HYPH
cord-320417-01l27d99	156	15	based	base	VBN
cord-320417-01l27d99	156	16	analysis	analysis	NN
cord-320417-01l27d99	156	17	could	could	MD
cord-320417-01l27d99	156	18	lead	lead	VB
cord-320417-01l27d99	156	19	to	to	IN
cord-320417-01l27d99	156	20	artifacts	artifact	NNS
cord-320417-01l27d99	156	21	26	26	CD
cord-320417-01l27d99	156	22	,	,	,
cord-320417-01l27d99	156	23	27	27	CD
cord-320417-01l27d99	156	24	.	.	.
cord-320417-01l27d99	157	1	In	in	IN
cord-320417-01l27d99	157	2	the	the	DT
cord-320417-01l27d99	157	3	nature	nature	NN
cord-320417-01l27d99	157	4	of	of	IN
cord-320417-01l27d99	157	5	evolution	evolution	NN
cord-320417-01l27d99	157	6	,	,	,
cord-320417-01l27d99	157	7	viruses	virus	NNS
cord-320417-01l27d99	157	8	are	be	VBP
cord-320417-01l27d99	157	9	continuously	continuously	RB
cord-320417-01l27d99	157	10	changing	change	VBG
cord-320417-01l27d99	157	11	as	as	IN
cord-320417-01l27d99	157	12	a	a	DT
cord-320417-01l27d99	157	13	result	result	NN
cord-320417-01l27d99	157	14	of	of	IN
cord-320417-01l27d99	157	15	genetic	genetic	JJ
cord-320417-01l27d99	157	16	selection	selection	NN
cord-320417-01l27d99	157	17	through	through	IN
cord-320417-01l27d99	157	18	two	two	CD
cord-320417-01l27d99	157	19	principal	principal	JJ
cord-320417-01l27d99	157	20	mechanisms	mechanism	NNS
cord-320417-01l27d99	157	21	:	:	:
cord-320417-01l27d99	157	22	1	1	LS
cord-320417-01l27d99	157	23	)	)	-RRB-
cord-320417-01l27d99	157	24	de	de	FW
cord-320417-01l27d99	157	25	novo	novo	NNP
cord-320417-01l27d99	157	26	mutation	mutation	NN
cord-320417-01l27d99	157	27	that	that	WDT
cord-320417-01l27d99	157	28	occurs	occur	VBZ
cord-320417-01l27d99	157	29	when	when	WRB
cord-320417-01l27d99	157	30	an	an	DT
cord-320417-01l27d99	157	31	error	error	NN
cord-320417-01l27d99	157	32	is	be	VBZ
cord-320417-01l27d99	157	33	incorporated	incorporate	VBN
cord-320417-01l27d99	157	34	in	in	IN
cord-320417-01l27d99	157	35	the	the	DT
cord-320417-01l27d99	157	36	genome	genome	NN
cord-320417-01l27d99	157	37	and	and	CC
cord-320417-01l27d99	157	38	causes	cause	VBZ
cord-320417-01l27d99	157	39	subtle	subtle	JJ
cord-320417-01l27d99	157	40	genetic	genetic	JJ
cord-320417-01l27d99	157	41	changes	change	NNS
cord-320417-01l27d99	157	42	;	;	:
cord-320417-01l27d99	157	43	2	2	LS
cord-320417-01l27d99	157	44	)	)	-RRB-
cord-320417-01l27d99	157	45	recombination	recombination	NN
cord-320417-01l27d99	157	46	that	that	WDT
cord-320417-01l27d99	157	47	happens	happen	VBZ
cord-320417-01l27d99	157	48	when	when	WRB
cord-320417-01l27d99	157	49	co	co	NN
cord-320417-01l27d99	157	50	-	-	JJ
cord-320417-01l27d99	157	51	infecting	infect	VBG
cord-320417-01l27d99	157	52	viruses	virus	NNS
cord-320417-01l27d99	157	53	swap	swap	VBP
cord-320417-01l27d99	157	54	genetic	genetic	JJ
cord-320417-01l27d99	157	55	information	information	NN
cord-320417-01l27d99	157	56	and	and	CC
cord-320417-01l27d99	157	57	cause	cause	VB
cord-320417-01l27d99	157	58	major	major	JJ
cord-320417-01l27d99	157	59	genetic	genetic	JJ
cord-320417-01l27d99	157	60	changes	change	NNS
cord-320417-01l27d99	157	61	28	28	CD
cord-320417-01l27d99	157	62	.	.	.
cord-320417-01l27d99	158	1	There	there	EX
cord-320417-01l27d99	158	2	are	be	VBP
cord-320417-01l27d99	158	3	two	two	CD
cord-320417-01l27d99	158	4	mechanisms	mechanism	NNS
cord-320417-01l27d99	158	5	of	of	IN
cord-320417-01l27d99	158	6	viral	viral	JJ
cord-320417-01l27d99	158	7	recombination	recombination	NN
cord-320417-01l27d99	158	8	:	:	:
cord-320417-01l27d99	158	9	1	1	LS
cord-320417-01l27d99	158	10	)	)	-RRB-
cord-320417-01l27d99	158	11	the	the	DT
cord-320417-01l27d99	158	12	independent	independent	JJ
cord-320417-01l27d99	158	13	assortment	assortment	NN
cord-320417-01l27d99	158	14	,	,	,
cord-320417-01l27d99	158	15	where	where	WRB
cord-320417-01l27d99	158	16	viruses	virus	NNS
cord-320417-01l27d99	158	17	with	with	IN
cord-320417-01l27d99	158	18	multipartite	multipartite	NNP
cord-320417-01l27d99	158	19	genomes	genome	NNS
cord-320417-01l27d99	158	20	trade	trade	VBP
cord-320417-01l27d99	158	21	unlinked	unlinked	JJ
cord-320417-01l27d99	158	22	,	,	,
cord-320417-01l27d99	158	23	and	and	CC
cord-320417-01l27d99	158	24	assorted	assorted	JJ
cord-320417-01l27d99	158	25	random	random	JJ
cord-320417-01l27d99	158	26	segments	segment	NNS
cord-320417-01l27d99	158	27	during	during	IN
cord-320417-01l27d99	158	28	replication	replication	NN
cord-320417-01l27d99	158	29	;	;	:
cord-320417-01l27d99	158	30	2	2	LS
cord-320417-01l27d99	158	31	)	)	-RRB-
cord-320417-01l27d99	158	32	the	the	DT
cord-320417-01l27d99	158	33	incompletely	incompletely	RB
cord-320417-01l27d99	158	34	linked	link	VBN
cord-320417-01l27d99	158	35	gene	gene	NN
cord-320417-01l27d99	158	36	,	,	,
cord-320417-01l27d99	158	37	where	where	WRB
cord-320417-01l27d99	158	38	viruses	virus	NNS
cord-320417-01l27d99	158	39	trade	trade	VBP
cord-320417-01l27d99	158	40	linked	link	VBN
cord-320417-01l27d99	158	41	genes	gene	NNS
cord-320417-01l27d99	158	42	residing	reside	VBG
cord-320417-01l27d99	158	43	on	on	IN
cord-320417-01l27d99	158	44	the	the	DT
cord-320417-01l27d99	158	45	same	same	JJ
cord-320417-01l27d99	158	46	piece	piece	NN
cord-320417-01l27d99	158	47	of	of	IN
cord-320417-01l27d99	158	48	nucleic	nucleic	JJ
cord-320417-01l27d99	158	49	acid	acid	NN
cord-320417-01l27d99	158	50	.	.	.
cord-320417-01l27d99	159	1	Either	either	DT
cord-320417-01l27d99	159	2	mechanism	mechanism	NN
cord-320417-01l27d99	159	3	can	can	MD
cord-320417-01l27d99	159	4	produce	produce	VB
cord-320417-01l27d99	159	5	new	new	JJ
cord-320417-01l27d99	159	6	viral	viral	JJ
cord-320417-01l27d99	159	7	serotypes	serotype	NNS
cord-320417-01l27d99	159	8	with	with	IN
cord-320417-01l27d99	159	9	altered	alter	VBN
cord-320417-01l27d99	159	10	virulence	virulence	NN
cord-320417-01l27d99	159	11	8	8	CD
cord-320417-01l27d99	159	12	.	.	.
cord-320417-01l27d99	160	1	Recombination	recombination	NN
cord-320417-01l27d99	160	2	has	have	VBZ
cord-320417-01l27d99	160	3	been	be	VBN
cord-320417-01l27d99	160	4	shown	show	VBN
cord-320417-01l27d99	160	5	to	to	TO
cord-320417-01l27d99	160	6	occur	occur	VB
cord-320417-01l27d99	160	7	in	in	IN
cord-320417-01l27d99	160	8	several	several	JJ
cord-320417-01l27d99	160	9	positive	positive	JJ
cord-320417-01l27d99	160	10	-	-	HYPH
cord-320417-01l27d99	160	11	sense	sense	NN
cord-320417-01l27d99	160	12	single	single	JJ
cord-320417-01l27d99	160	13	-	-	HYPH
cord-320417-01l27d99	160	14	stranded	strand	VBN
cord-320417-01l27d99	160	15	RNA	RNA	NNP
cord-320417-01l27d99	160	16	virus	virus	NN
cord-320417-01l27d99	160	17	groups	group	NNS
cord-320417-01l27d99	160	18	,	,	,
cord-320417-01l27d99	160	19	such	such	JJ
cord-320417-01l27d99	160	20	as	as	IN
cord-320417-01l27d99	160	21	retroviruses	retrovirus	NNS
cord-320417-01l27d99	160	22	,	,	,
cord-320417-01l27d99	160	23	picornaviruses	picornavirus	NNS
cord-320417-01l27d99	160	24	,	,	,
cord-320417-01l27d99	160	25	and	and	CC
cord-320417-01l27d99	160	26	coronaviruses	coronaviruse	NNS
cord-320417-01l27d99	160	27	.	.	.
cord-320417-01l27d99	161	1	It	-PRON-	PRP
cord-320417-01l27d99	161	2	is	be	VBZ
cord-320417-01l27d99	161	3	currently	currently	RB
cord-320417-01l27d99	161	4	believed	believe	VBN
cord-320417-01l27d99	161	5	that	that	IN
cord-320417-01l27d99	161	6	recombination	recombination	NN
cord-320417-01l27d99	161	7	in	in	IN
cord-320417-01l27d99	161	8	coronaviruses	coronaviruse	NNS
cord-320417-01l27d99	161	9	occurs	occur	VBZ
cord-320417-01l27d99	161	10	by	by	IN
cord-320417-01l27d99	161	11	a	a	DT
cord-320417-01l27d99	161	12	copy	copy	NN
cord-320417-01l27d99	161	13	-	-	HYPH
cord-320417-01l27d99	161	14	choice	choice	NN
cord-320417-01l27d99	161	15	mechanism	mechanism	NN
cord-320417-01l27d99	161	16	28	28	CD
cord-320417-01l27d99	161	17	,	,	,
cord-320417-01l27d99	161	18	in	in	IN
cord-320417-01l27d99	161	19	which	which	WDT
cord-320417-01l27d99	161	20	the	the	DT
cord-320417-01l27d99	161	21	viral	viral	JJ
cord-320417-01l27d99	161	22	RNA	RNA	NNP
cord-320417-01l27d99	161	23	polymerase	polymerase	NN
cord-320417-01l27d99	161	24	binds	bind	VBZ
cord-320417-01l27d99	161	25	to	to	IN
cord-320417-01l27d99	161	26	only	only	RB
cord-320417-01l27d99	161	27	a	a	DT
cord-320417-01l27d99	161	28	few	few	JJ
cord-320417-01l27d99	161	29	bases	basis	NNS
cord-320417-01l27d99	161	30	of	of	IN
cord-320417-01l27d99	161	31	the	the	DT
cord-320417-01l27d99	161	32	template	template	NN
cord-320417-01l27d99	161	33	RNA	RNA	NNP
cord-320417-01l27d99	161	34	.	.	.
cord-320417-01l27d99	162	1	The	the	DT
cord-320417-01l27d99	162	2	weak	weak	JJ
cord-320417-01l27d99	162	3	interaction	interaction	NN
cord-320417-01l27d99	162	4	permits	permit	VBZ
cord-320417-01l27d99	162	5	the	the	DT
cord-320417-01l27d99	162	6	polymerase	polymerase	NN
cord-320417-01l27d99	162	7	to	to	TO
cord-320417-01l27d99	162	8	disassociate	disassociate	VB
cord-320417-01l27d99	162	9	from	from	IN
cord-320417-01l27d99	162	10	the	the	DT
cord-320417-01l27d99	162	11	original	original	JJ
cord-320417-01l27d99	162	12	template	template	NN
cord-320417-01l27d99	162	13	and	and	CC
cord-320417-01l27d99	162	14	then	then	RB
cord-320417-01l27d99	162	15	associate	associate	VB
cord-320417-01l27d99	162	16	with	with	IN
cord-320417-01l27d99	162	17	a	a	DT
cord-320417-01l27d99	162	18	new	new	JJ
cord-320417-01l27d99	162	19	template	template	NN
cord-320417-01l27d99	162	20	RNA	RNA	NNP
cord-320417-01l27d99	162	21	strand	strand	NN
cord-320417-01l27d99	162	22	.	.	.
cord-320417-01l27d99	163	1	The	the	DT
cord-320417-01l27d99	163	2	efficiency	efficiency	NN
cord-320417-01l27d99	163	3	of	of	IN
cord-320417-01l27d99	163	4	this	this	DT
cord-320417-01l27d99	163	5	mechanism	mechanism	NN
cord-320417-01l27d99	163	6	of	of	IN
cord-320417-01l27d99	163	7	recombination	recombination	NN
cord-320417-01l27d99	163	8	is	be	VBZ
cord-320417-01l27d99	163	9	relatively	relatively	RB
cord-320417-01l27d99	163	10	low	low	JJ
cord-320417-01l27d99	163	11	.	.	.
cord-320417-01l27d99	164	1	Viral	viral	JJ
cord-320417-01l27d99	164	2	recombination	recombination	NN
cord-320417-01l27d99	164	3	generates	generate	VBZ
cord-320417-01l27d99	164	4	novel	novel	JJ
cord-320417-01l27d99	164	5	progeny	progeny	NN
cord-320417-01l27d99	164	6	viruses	virus	NNS
cord-320417-01l27d99	164	7	that	that	WDT
cord-320417-01l27d99	164	8	express	express	VBP
cord-320417-01l27d99	164	9	new	new	JJ
cord-320417-01l27d99	164	10	antigenic	antigenic	JJ
cord-320417-01l27d99	164	11	characteristics	characteristic	NNS
cord-320417-01l27d99	164	12	,	,	,
cord-320417-01l27d99	164	13	with	with	IN
cord-320417-01l27d99	164	14	new	new	JJ
cord-320417-01l27d99	164	15	surface	surface	NN
cord-320417-01l27d99	164	16	proteins	protein	NNS
cord-320417-01l27d99	164	17	to	to	TO
cord-320417-01l27d99	164	18	infect	infect	VB
cord-320417-01l27d99	164	19	previously	previously	RB
cord-320417-01l27d99	164	20	resistant	resistant	JJ
cord-320417-01l27d99	164	21	individuals	individual	NNS
cord-320417-01l27d99	164	22	,	,	,
cord-320417-01l27d99	164	23	or	or	CC
cord-320417-01l27d99	164	24	with	with	IN
cord-320417-01l27d99	164	25	novel	novel	JJ
cord-320417-01l27d99	164	26	combinations	combination	NNS
cord-320417-01l27d99	164	27	of	of	IN
cord-320417-01l27d99	164	28	proteins	protein	NNS
cord-320417-01l27d99	164	29	to	to	TO
cord-320417-01l27d99	164	30	infect	infect	VB
cord-320417-01l27d99	164	31	new	new	JJ
cord-320417-01l27d99	164	32	cells	cell	NNS
cord-320417-01l27d99	164	33	in	in	IN
cord-320417-01l27d99	164	34	the	the	DT
cord-320417-01l27d99	164	35	original	original	JJ
cord-320417-01l27d99	164	36	host	host	NN
cord-320417-01l27d99	164	37	.	.	.
cord-320417-01l27d99	165	1	On	on	IN
cord-320417-01l27d99	165	2	the	the	DT
cord-320417-01l27d99	165	3	other	other	JJ
cord-320417-01l27d99	165	4	side	side	NN
cord-320417-01l27d99	165	5	,	,	,
cord-320417-01l27d99	165	6	viral	viral	JJ
cord-320417-01l27d99	165	7	recombination	recombination	NN
cord-320417-01l27d99	165	8	has	have	VBZ
cord-320417-01l27d99	165	9	also	also	RB
cord-320417-01l27d99	165	10	been	be	VBN
cord-320417-01l27d99	165	11	used	use	VBN
cord-320417-01l27d99	165	12	to	to	TO
cord-320417-01l27d99	165	13	create	create	VB
cord-320417-01l27d99	165	14	new	new	JJ
cord-320417-01l27d99	165	15	vaccines	vaccine	NNS
cord-320417-01l27d99	165	16	.	.	.
cord-320417-01l27d99	166	1	Vaccinia	vaccinia	NN
cord-320417-01l27d99	166	2	virus	virus	NN
cord-320417-01l27d99	166	3	strains	strain	VBZ
cord-320417-01l27d99	166	4	carrying	carry	VBG
cord-320417-01l27d99	166	5	genes	gene	NNS
cord-320417-01l27d99	166	6	coding	code	VBG
cord-320417-01l27d99	166	7	for	for	IN
cord-320417-01l27d99	166	8	viral	viral	JJ
cord-320417-01l27d99	166	9	antigens	antigen	NNS
cord-320417-01l27d99	166	10	but	but	CC
cord-320417-01l27d99	166	11	low	low	JJ
cord-320417-01l27d99	166	12	virulence	virulence	NN
cord-320417-01l27d99	166	13	has	have	VBZ
cord-320417-01l27d99	166	14	been	be	VBN
cord-320417-01l27d99	166	15	produced	produce	VBN
cord-320417-01l27d99	166	16	to	to	TO
cord-320417-01l27d99	166	17	stimulate	stimulate	VB
cord-320417-01l27d99	166	18	specific	specific	JJ
cord-320417-01l27d99	166	19	antibody	antibody	NN
cord-320417-01l27d99	166	20	production	production	NN
cord-320417-01l27d99	166	21	by	by	IN
cord-320417-01l27d99	166	22	the	the	DT
cord-320417-01l27d99	166	23	host	host	NN
cord-320417-01l27d99	166	24	,	,	,
cord-320417-01l27d99	166	25	resulting	result	VBG
cord-320417-01l27d99	166	26	in	in	IN
cord-320417-01l27d99	166	27	the	the	DT
cord-320417-01l27d99	166	28	protection	protection	NN
cord-320417-01l27d99	166	29	of	of	IN
cord-320417-01l27d99	166	30	the	the	DT
cord-320417-01l27d99	166	31	host	host	NN
cord-320417-01l27d99	166	32	from	from	IN
cord-320417-01l27d99	166	33	the	the	DT
cord-320417-01l27d99	166	34	immunogen	immunogen	NN
cord-320417-01l27d99	166	35	.	.	.
cord-320417-01l27d99	167	1	Therefore	therefore	RB
cord-320417-01l27d99	167	2	,	,	,
cord-320417-01l27d99	167	3	characterizing	characterize	VBG
cord-320417-01l27d99	167	4	viral	viral	JJ
cord-320417-01l27d99	167	5	recombination	recombination	NN
cord-320417-01l27d99	167	6	will	will	MD
cord-320417-01l27d99	167	7	not	not	RB
cord-320417-01l27d99	167	8	only	only	RB
cord-320417-01l27d99	167	9	help	help	VB
cord-320417-01l27d99	167	10	health	health	NN
cord-320417-01l27d99	167	11	management	management	NN
cord-320417-01l27d99	167	12	teams	team	NNS
cord-320417-01l27d99	167	13	effectively	effectively	RB
cord-320417-01l27d99	167	14	contain	contain	VBP
cord-320417-01l27d99	167	15	emerging	emerge	VBG
cord-320417-01l27d99	167	16	viruses	virus	NNS
cord-320417-01l27d99	167	17	with	with	IN
cord-320417-01l27d99	167	18	enhanced	enhance	VBN
cord-320417-01l27d99	167	19	virulence	virulence	NN
cord-320417-01l27d99	167	20	,	,	,
cord-320417-01l27d99	167	21	but	but	CC
cord-320417-01l27d99	167	22	also	also	RB
cord-320417-01l27d99	167	23	support	support	VBP
cord-320417-01l27d99	167	24	virologists	virologist	NNS
cord-320417-01l27d99	167	25	in	in	IN
cord-320417-01l27d99	167	26	creating	create	VBG
cord-320417-01l27d99	167	27	new	new	JJ
cord-320417-01l27d99	167	28	vaccines	vaccine	NNS
cord-320417-01l27d99	167	29	.	.	.
cord-320417-01l27d99	168	1	Due	due	IN
cord-320417-01l27d99	168	2	to	to	IN
cord-320417-01l27d99	168	3	their	-PRON-	PRP$
cord-320417-01l27d99	168	4	limited	limited	JJ
cord-320417-01l27d99	168	5	genome	genome	NN
cord-320417-01l27d99	168	6	length	length	NN
cord-320417-01l27d99	168	7	and	and	CC
cord-320417-01l27d99	168	8	higher	high	JJR
cord-320417-01l27d99	168	9	mutation	mutation	NN
cord-320417-01l27d99	168	10	rate	rate	NN
cord-320417-01l27d99	168	11	,	,	,
cord-320417-01l27d99	168	12	many	many	JJ
cord-320417-01l27d99	168	13	RNA	RNA	NNP
cord-320417-01l27d99	168	14	viruses	virus	NNS
cord-320417-01l27d99	168	15	have	have	VBP
cord-320417-01l27d99	168	16	genetically	genetically	RB
cord-320417-01l27d99	168	17	diverse	diverse	JJ
cord-320417-01l27d99	168	18	populations	population	NNS
cord-320417-01l27d99	168	19	known	know	VBN
cord-320417-01l27d99	168	20	as	as	IN
cord-320417-01l27d99	168	21	quasispecies	quasispecies	NNP
cord-320417-01l27d99	168	22	29	29	CD
cord-320417-01l27d99	168	23	,	,	,
cord-320417-01l27d99	168	24	meaning	mean	VBG
cord-320417-01l27d99	168	25	a	a	DT
cord-320417-01l27d99	168	26	highly	highly	RB
cord-320417-01l27d99	168	27	diverse	diverse	JJ
cord-320417-01l27d99	168	28	replicating	replicate	VBG
cord-320417-01l27d99	168	29	population	population	NN
cord-320417-01l27d99	168	30	reaching	reach	VBG
cord-320417-01l27d99	168	31	equilibrium	equilibrium	NN
cord-320417-01l27d99	168	32	in	in	IN
cord-320417-01l27d99	168	33	the	the	DT
cord-320417-01l27d99	168	34	level	level	NN
cord-320417-01l27d99	168	35	of	of	IN
cord-320417-01l27d99	168	36	diversity	diversity	NN
cord-320417-01l27d99	168	37	.	.	.
cord-320417-01l27d99	169	1	In	in	IN
cord-320417-01l27d99	169	2	traditional	traditional	JJ
cord-320417-01l27d99	169	3	population	population	NN
cord-320417-01l27d99	169	4	genetics	genetic	NNS
cord-320417-01l27d99	169	5	,	,	,
cord-320417-01l27d99	169	6	a	a	DT
cord-320417-01l27d99	169	7	given	give	VBN
cord-320417-01l27d99	169	8	variant	variant	NN
cord-320417-01l27d99	169	9	in	in	IN
cord-320417-01l27d99	169	10	a	a	DT
cord-320417-01l27d99	169	11	population	population	NN
cord-320417-01l27d99	169	12	is	be	VBZ
cord-320417-01l27d99	169	13	approximated	approximate	VBN
cord-320417-01l27d99	169	14	by	by	IN
cord-320417-01l27d99	169	15	its	-PRON-	PRP$
cord-320417-01l27d99	169	16	fitness	fitness	NN
cord-320417-01l27d99	169	17	.	.	.
cord-320417-01l27d99	170	1	However	however	RB
cord-320417-01l27d99	170	2	,	,	,
cord-320417-01l27d99	170	3	the	the	DT
cord-320417-01l27d99	170	4	quasispecies	quasispecies	NNP
cord-320417-01l27d99	170	5	model	model	NN
cord-320417-01l27d99	170	6	suggests	suggest	VBZ
cord-320417-01l27d99	170	7	that	that	IN
cord-320417-01l27d99	170	8	variants	variant	NNS
cord-320417-01l27d99	170	9	are	be	VBP
cord-320417-01l27d99	170	10	"	"	``
cord-320417-01l27d99	170	11	coupled	couple	VBN
cord-320417-01l27d99	170	12	"	"	''
cord-320417-01l27d99	170	13	in	in	IN
cord-320417-01l27d99	170	14	sequence	sequence	NN
cord-320417-01l27d99	170	15	space	space	NN
cord-320417-01l27d99	170	16	.	.	.
cord-320417-01l27d99	171	1	A	a	DT
cord-320417-01l27d99	171	2	low	low	JJ
cord-320417-01l27d99	171	3	fitness	fitness	NN
cord-320417-01l27d99	171	4	variant	variant	NN
cord-320417-01l27d99	171	5	can	can	MD
cord-320417-01l27d99	171	6	thereby	thereby	RB
cord-320417-01l27d99	171	7	be	be	VB
cord-320417-01l27d99	171	8	maintained	maintain	VBN
cord-320417-01l27d99	171	9	at	at	IN
cord-320417-01l27d99	171	10	a	a	DT
cord-320417-01l27d99	171	11	higher	high	JJR
cord-320417-01l27d99	171	12	than	than	IN
cord-320417-01l27d99	171	13	expected	expect	VBN
cord-320417-01l27d99	171	14	frequency	frequency	NN
cord-320417-01l27d99	171	15	because	because	IN
cord-320417-01l27d99	171	16	it	-PRON-	PRP
cord-320417-01l27d99	171	17	is	be	VBZ
cord-320417-01l27d99	171	18	coupled	couple	VBN
cord-320417-01l27d99	171	19	to	to	IN
cord-320417-01l27d99	171	20	a	a	DT
cord-320417-01l27d99	171	21	well	well	RB
cord-320417-01l27d99	171	22	-	-	HYPH
cord-320417-01l27d99	171	23	represented	represent	VBN
cord-320417-01l27d99	171	24	,	,	,
cord-320417-01l27d99	171	25	higher	high	JJR
cord-320417-01l27d99	171	26	fitness	fitness	NN
cord-320417-01l27d99	171	27	genotype	genotype	NN
cord-320417-01l27d99	171	28	in	in	IN
cord-320417-01l27d99	171	29	sequence	sequence	NN
cord-320417-01l27d99	171	30	space	space	NN
cord-320417-01l27d99	171	31	30	30	CD
cord-320417-01l27d99	171	32	.	.	.
cord-320417-01l27d99	172	1	Instead	instead	RB
cord-320417-01l27d99	172	2	of	of	IN
cord-320417-01l27d99	172	3	focusing	focus	VBG
cord-320417-01l27d99	172	4	on	on	IN
cord-320417-01l27d99	172	5	ancestor	ancestor	NN
cord-320417-01l27d99	172	6	-	-	HYPH
cord-320417-01l27d99	172	7	descendant	descendant	NN
cord-320417-01l27d99	172	8	relationships	relationship	NNS
cord-320417-01l27d99	172	9	,	,	,
cord-320417-01l27d99	172	10	the	the	DT
cord-320417-01l27d99	172	11	quasispecies	quasispecies	NNP
cord-320417-01l27d99	172	12	model	model	NN
cord-320417-01l27d99	172	13	puts	put	VBZ
cord-320417-01l27d99	172	14	more	more	JJR
cord-320417-01l27d99	172	15	weight	weight	NN
cord-320417-01l27d99	172	16	on	on	IN
cord-320417-01l27d99	172	17	co	co	NN
cord-320417-01l27d99	172	18	-	-	JJ
cord-320417-01l27d99	172	19	occurring	occurring	JJ
cord-320417-01l27d99	172	20	variants	variant	NNS
cord-320417-01l27d99	172	21	within	within	IN
cord-320417-01l27d99	172	22	the	the	DT
cord-320417-01l27d99	172	23	same	same	JJ
cord-320417-01l27d99	172	24	genome	genome	NN
cord-320417-01l27d99	172	25	and	and	CC
cord-320417-01l27d99	172	26	their	-PRON-	PRP$
cord-320417-01l27d99	172	27	corresponding	corresponding	JJ
cord-320417-01l27d99	172	28	populations	population	NNS
cord-320417-01l27d99	172	29	,	,	,
cord-320417-01l27d99	172	30	which	which	WDT
cord-320417-01l27d99	172	31	is	be	VBZ
cord-320417-01l27d99	172	32	exactly	exactly	RB
cord-320417-01l27d99	172	33	the	the	DT
cord-320417-01l27d99	172	34	purpose	purpose	NN
cord-320417-01l27d99	172	35	of	of	IN
cord-320417-01l27d99	172	36	this	this	DT
cord-320417-01l27d99	172	37	2D	2d	NN
cord-320417-01l27d99	172	38	mapping	mapping	NN
cord-320417-01l27d99	172	39	for	for	IN
cord-320417-01l27d99	172	40	co	co	NN
cord-320417-01l27d99	172	41	-	-	JJ
cord-320417-01l27d99	172	42	occurring	occurring	JJ
cord-320417-01l27d99	172	43	variants	variant	NNS
cord-320417-01l27d99	172	44	.	.	.
cord-320417-01l27d99	173	1	The	the	DT
cord-320417-01l27d99	173	2	emergence	emergence	NN
cord-320417-01l27d99	173	3	of	of	IN
cord-320417-01l27d99	173	4	inter	inter	JJ
cord-320417-01l27d99	173	5	-	-	JJ
cord-320417-01l27d99	173	6	clade	clade	JJ
cord-320417-01l27d99	173	7	hybrid	hybrid	JJ
cord-320417-01l27d99	173	8	SARS	SARS	NNP
cord-320417-01l27d99	173	9	-	-	HYPH
cord-320417-01l27d99	173	10	CoV-2	CoV-2	NNP
cord-320417-01l27d99	173	11	lineages	lineage	NNS
cord-320417-01l27d99	173	12	indicated	indicate	VBD
cord-320417-01l27d99	173	13	that	that	IN
cord-320417-01l27d99	173	14	the	the	DT
cord-320417-01l27d99	173	15	causative	causative	JJ
cord-320417-01l27d99	173	16	agent	agent	NN
cord-320417-01l27d99	173	17	of	of	IN
cord-320417-01l27d99	173	18	COVID-19	COVID-19	NNP
cord-320417-01l27d99	173	19	has	have	VBZ
cord-320417-01l27d99	173	20	entered	enter	VBN
cord-320417-01l27d99	173	21	a	a	DT
cord-320417-01l27d99	173	22	phase	phase	NN
cord-320417-01l27d99	173	23	of	of	IN
cord-320417-01l27d99	173	24	quasispecies	quasispecie	NNS
cord-320417-01l27d99	173	25	.	.	.
cord-320417-01l27d99	174	1	While	while	IN
cord-320417-01l27d99	174	2	tracing	trace	VBG
cord-320417-01l27d99	174	3	the	the	DT
cord-320417-01l27d99	174	4	path	path	NN
cord-320417-01l27d99	174	5	of	of	IN
cord-320417-01l27d99	174	6	viral	viral	JJ
cord-320417-01l27d99	174	7	infection	infection	NN
cord-320417-01l27d99	174	8	is	be	VBZ
cord-320417-01l27d99	174	9	still	still	RB
cord-320417-01l27d99	174	10	important	important	JJ
cord-320417-01l27d99	174	11	,	,	,
cord-320417-01l27d99	174	12	estimating	estimate	VBG
cord-320417-01l27d99	174	13	the	the	DT
cord-320417-01l27d99	174	14	level	level	NN
cord-320417-01l27d99	174	15	of	of	IN
cord-320417-01l27d99	174	16	viral	viral	JJ
cord-320417-01l27d99	174	17	diversity	diversity	NN
cord-320417-01l27d99	174	18	is	be	VBZ
cord-320417-01l27d99	174	19	also	also	RB
cord-320417-01l27d99	174	20	urgently	urgently	RB
cord-320417-01l27d99	174	21	needed	need	VBN
cord-320417-01l27d99	174	22	.	.	.
cord-320417-01l27d99	175	1	In	in	IN
cord-320417-01l27d99	175	2	order	order	NN
cord-320417-01l27d99	175	3	to	to	TO
cord-320417-01l27d99	175	4	survive	survive	VB
cord-320417-01l27d99	175	5	,	,	,
cord-320417-01l27d99	175	6	a	a	DT
cord-320417-01l27d99	175	7	virus	virus	NN
cord-320417-01l27d99	175	8	must	must	MD
cord-320417-01l27d99	175	9	be	be	VB
cord-320417-01l27d99	175	10	diverse	diverse	JJ
cord-320417-01l27d99	175	11	enough	enough	RB
cord-320417-01l27d99	175	12	to	to	TO
cord-320417-01l27d99	175	13	rapidly	rapidly	RB
cord-320417-01l27d99	175	14	adapt	adapt	VB
cord-320417-01l27d99	175	15	to	to	IN
cord-320417-01l27d99	175	16	changing	change	VBG
cord-320417-01l27d99	175	17	environments	environment	NNS
cord-320417-01l27d99	175	18	without	without	IN
cord-320417-01l27d99	175	19	losing	lose	VBG
cord-320417-01l27d99	175	20	fitness	fitness	NN
cord-320417-01l27d99	175	21	during	during	IN
cord-320417-01l27d99	175	22	the	the	DT
cord-320417-01l27d99	175	23	passage	passage	NN
cord-320417-01l27d99	175	24	from	from	IN
cord-320417-01l27d99	175	25	host	host	NN
cord-320417-01l27d99	175	26	to	to	IN
cord-320417-01l27d99	175	27	host	host	VB
cord-320417-01l27d99	175	28	.	.	.
cord-320417-01l27d99	176	1	The	the	DT
cord-320417-01l27d99	176	2	level	level	NN
cord-320417-01l27d99	176	3	of	of	IN
cord-320417-01l27d99	176	4	diversity	diversity	NN
cord-320417-01l27d99	176	5	varies	vary	VBZ
cord-320417-01l27d99	176	6	depending	depend	VBG
cord-320417-01l27d99	176	7	on	on	IN
cord-320417-01l27d99	176	8	the	the	DT
cord-320417-01l27d99	176	9	host	host	NN
cord-320417-01l27d99	176	10	environment	environment	NN
cord-320417-01l27d99	176	11	and	and	CC
cord-320417-01l27d99	176	12	is	be	VBZ
cord-320417-01l27d99	176	13	specific	specific	JJ
cord-320417-01l27d99	176	14	to	to	IN
cord-320417-01l27d99	176	15	the	the	DT
cord-320417-01l27d99	176	16	virus	virus	NN
cord-320417-01l27d99	176	17	-	-	HYPH
cord-320417-01l27d99	176	18	host	host	NN
cord-320417-01l27d99	176	19	combination	combination	NN
cord-320417-01l27d99	176	20	.	.	.
cord-320417-01l27d99	177	1	The	the	DT
cord-320417-01l27d99	177	2	differences	difference	NNS
cord-320417-01l27d99	177	3	in	in	IN
cord-320417-01l27d99	177	4	viral	viral	JJ
cord-320417-01l27d99	177	5	clade	clade	NN
cord-320417-01l27d99	177	6	populations	population	NNS
cord-320417-01l27d99	177	7	from	from	IN
cord-320417-01l27d99	177	8	separate	separate	JJ
cord-320417-01l27d99	177	9	regions	region	NNS
cord-320417-01l27d99	177	10	are	be	VBP
cord-320417-01l27d99	177	11	clearly	clearly	RB
cord-320417-01l27d99	177	12	displayed	display	VBN
cord-320417-01l27d99	177	13	in	in	IN
cord-320417-01l27d99	177	14	Figures	figure	NNS
cord-320417-01l27d99	177	15	 	 	_SP
cord-320417-01l27d99	177	16	4	4	CD
cord-320417-01l27d99	177	17	and	and	CC
cord-320417-01l27d99	177	18	5	5	CD
cord-320417-01l27d99	177	19	.	.	.
cord-320417-01l27d99	178	1	Predictions	prediction	NNS
cord-320417-01l27d99	178	2	from	from	IN
cord-320417-01l27d99	178	3	the	the	DT
cord-320417-01l27d99	178	4	quasispecies	quasispecie	NNS
cord-320417-01l27d99	178	5	theory	theory	NN
cord-320417-01l27d99	178	6	have	have	VBP
cord-320417-01l27d99	178	7	profound	profound	JJ
cord-320417-01l27d99	178	8	implications	implication	NNS
cord-320417-01l27d99	178	9	for	for	IN
cord-320417-01l27d99	178	10	the	the	DT
cord-320417-01l27d99	178	11	understanding	understanding	NN
cord-320417-01l27d99	178	12	of	of	IN
cord-320417-01l27d99	178	13	the	the	DT
cord-320417-01l27d99	178	14	viral	viral	JJ
cord-320417-01l27d99	178	15	disease	disease	NN
cord-320417-01l27d99	178	16	.	.	.
cord-320417-01l27d99	179	1	The	the	DT
cord-320417-01l27d99	179	2	2D	2d	NN
cord-320417-01l27d99	179	3	plotting	plotting	NN
cord-320417-01l27d99	179	4	method	method	NN
cord-320417-01l27d99	179	5	for	for	IN
cord-320417-01l27d99	179	6	co	co	NN
cord-320417-01l27d99	179	7	-	-	JJ
cord-320417-01l27d99	179	8	occurring	occurring	JJ
cord-320417-01l27d99	179	9	variants	variant	NNS
cord-320417-01l27d99	179	10	is	be	VBZ
cord-320417-01l27d99	179	11	a	a	DT
cord-320417-01l27d99	179	12	useful	useful	JJ
cord-320417-01l27d99	179	13	tool	tool	NN
cord-320417-01l27d99	179	14	for	for	IN
cord-320417-01l27d99	179	15	a	a	DT
cord-320417-01l27d99	179	16	longitudinal	longitudinal	JJ
cord-320417-01l27d99	179	17	study	study	NN
cord-320417-01l27d99	179	18	to	to	TO
cord-320417-01l27d99	179	19	monitor	monitor	VB
cord-320417-01l27d99	179	20	the	the	DT
cord-320417-01l27d99	179	21	level	level	NN
cord-320417-01l27d99	179	22	of	of	IN
cord-320417-01l27d99	179	23	diversity	diversity	NN
cord-320417-01l27d99	179	24	from	from	IN
cord-320417-01l27d99	179	25	a	a	DT
cord-320417-01l27d99	179	26	region	region	NN
cord-320417-01l27d99	179	27	with	with	IN
cord-320417-01l27d99	179	28	certain	certain	JJ
cord-320417-01l27d99	179	29	environments	environment	NNS
cord-320417-01l27d99	179	30	,	,	,
cord-320417-01l27d99	179	31	include	include	VBP
cord-320417-01l27d99	179	32	the	the	DT
cord-320417-01l27d99	179	33	ethnogenesis	ethnogenesis	NN
cord-320417-01l27d99	179	34	population	population	NN
cord-320417-01l27d99	179	35	,	,	,
cord-320417-01l27d99	179	36	the	the	DT
cord-320417-01l27d99	179	37	policies	policy	NNS
cord-320417-01l27d99	179	38	enforced	enforce	VBN
cord-320417-01l27d99	179	39	by	by	IN
cord-320417-01l27d99	179	40	local	local	JJ
cord-320417-01l27d99	179	41	health	health	NN
cord-320417-01l27d99	179	42	authorities	authority	NNS
cord-320417-01l27d99	179	43	,	,	,
cord-320417-01l27d99	179	44	and	and	CC
cord-320417-01l27d99	179	45	viral	viral	JJ
cord-320417-01l27d99	179	46	immunity	immunity	NN
cord-320417-01l27d99	179	47	in	in	IN
cord-320417-01l27d99	179	48	the	the	DT
cord-320417-01l27d99	179	49	area	area	NN
cord-320417-01l27d99	179	50	.	.	.
cord-320417-01l27d99	180	1	In	in	IN
cord-320417-01l27d99	180	2	summary	summary	NN
cord-320417-01l27d99	180	3	,	,	,
cord-320417-01l27d99	180	4	I	-PRON-	PRP
cord-320417-01l27d99	180	5	performed	perform	VBD
cord-320417-01l27d99	180	6	whole	whole	JJ
cord-320417-01l27d99	180	7	-	-	HYPH
cord-320417-01l27d99	180	8	genome	genome	NN
cord-320417-01l27d99	180	9	sequencing	sequencing	NN
cord-320417-01l27d99	180	10	of	of	IN
cord-320417-01l27d99	180	11	the	the	DT
cord-320417-01l27d99	180	12	SARS	SARS	NNP
cord-320417-01l27d99	180	13	-	-	HYPH
cord-320417-01l27d99	180	14	CoV-2	CoV-2	NNP
cord-320417-01l27d99	180	15	virus	virus	NN
cord-320417-01l27d99	180	16	and	and	CC
cord-320417-01l27d99	180	17	compared	compare	VBD
cord-320417-01l27d99	180	18	those	those	DT
cord-320417-01l27d99	180	19	genome	genome	NN
cord-320417-01l27d99	180	20	sequences	sequence	NNS
cord-320417-01l27d99	180	21	with	with	IN
cord-320417-01l27d99	180	22	other	other	JJ
cord-320417-01l27d99	180	23	samples	sample	NNS
cord-320417-01l27d99	180	24	collected	collect	VBN
cord-320417-01l27d99	180	25	worldwide	worldwide	RB
cord-320417-01l27d99	180	26	.	.	.
cord-320417-01l27d99	181	1	I	-PRON-	PRP
cord-320417-01l27d99	181	2	proposed	propose	VBD
cord-320417-01l27d99	181	3	a	a	DT
cord-320417-01l27d99	181	4	2D	2d	NN
cord-320417-01l27d99	181	5	plotting	plotting	NN
cord-320417-01l27d99	181	6	method	method	NN
cord-320417-01l27d99	181	7	to	to	TO
cord-320417-01l27d99	181	8	illustrate	illustrate	VB
cord-320417-01l27d99	181	9	co	co	JJ
cord-320417-01l27d99	181	10	-	-	JJ
cord-320417-01l27d99	181	11	occurring	occurring	JJ
cord-320417-01l27d99	181	12	variants	variant	NNS
cord-320417-01l27d99	181	13	,	,	,
cord-320417-01l27d99	182	1	as	as	IN
cord-320417-01l27d99	182	2	it	-PRON-	PRP
cord-320417-01l27d99	182	3	has	have	VBZ
cord-320417-01l27d99	182	4	several	several	JJ
cord-320417-01l27d99	182	5	advantages	advantage	NNS
cord-320417-01l27d99	182	6	:	:	:
cord-320417-01l27d99	182	7	1	1	LS
cord-320417-01l27d99	182	8	)	)	-RRB-
cord-320417-01l27d99	182	9	it	-PRON-	PRP
cord-320417-01l27d99	182	10	directly	directly	RB
cord-320417-01l27d99	182	11	shows	show	VBZ
cord-320417-01l27d99	182	12	the	the	DT
cord-320417-01l27d99	182	13	population	population	NN
cord-320417-01l27d99	182	14	of	of	IN
cord-320417-01l27d99	182	15	coupled	coupled	JJ
cord-320417-01l27d99	182	16	mutations	mutation	NNS
cord-320417-01l27d99	182	17	without	without	IN
cord-320417-01l27d99	182	18	any	any	DT
cord-320417-01l27d99	182	19	statistical	statistical	JJ
cord-320417-01l27d99	182	20	manipulation	manipulation	NN
cord-320417-01l27d99	182	21	.	.	.
cord-320417-01l27d99	183	1	2	2	LS
cord-320417-01l27d99	183	2	)	)	-RRB-
cord-320417-01l27d99	183	3	it	-PRON-	PRP
cord-320417-01l27d99	183	4	is	be	VBZ
cord-320417-01l27d99	183	5	suitable	suitable	JJ
cord-320417-01l27d99	183	6	to	to	TO
cord-320417-01l27d99	183	7	display	display	VB
cord-320417-01l27d99	183	8	big	big	JJ
cord-320417-01l27d99	183	9	data	datum	NNS
cord-320417-01l27d99	183	10	with	with	IN
cord-320417-01l27d99	183	11	no	no	DT
cord-320417-01l27d99	183	12	limit	limit	NN
cord-320417-01l27d99	183	13	on	on	IN
cord-320417-01l27d99	183	14	the	the	DT
cord-320417-01l27d99	183	15	size	size	NN
cord-320417-01l27d99	183	16	of	of	IN
cord-320417-01l27d99	183	17	the	the	DT
cord-320417-01l27d99	183	18	genome	genome	NN
cord-320417-01l27d99	183	19	collection	collection	NN
cord-320417-01l27d99	183	20	(	(	-LRB-
cord-320417-01l27d99	183	21	actually	actually	RB
cord-320417-01l27d99	183	22	the	the	DT
cord-320417-01l27d99	183	23	more	more	RBR
cord-320417-01l27d99	183	24	the	the	DT
cord-320417-01l27d99	183	25	better	well	JJR
cord-320417-01l27d99	183	26	)	)	-RRB-
cord-320417-01l27d99	183	27	;	;	:
cord-320417-01l27d99	183	28	3	3	LS
cord-320417-01l27d99	183	29	)	)	-RRB-
cord-320417-01l27d99	183	30	it	-PRON-	PRP
cord-320417-01l27d99	183	31	is	be	VBZ
cord-320417-01l27d99	183	32	flexible	flexible	JJ
cord-320417-01l27d99	183	33	in	in	IN
cord-320417-01l27d99	183	34	regards	regard	NNS
cord-320417-01l27d99	183	35	to	to	IN
cord-320417-01l27d99	183	36	the	the	DT
cord-320417-01l27d99	183	37	plotting	plotting	NN
cord-320417-01l27d99	183	38	technique	technique	NN
cord-320417-01l27d99	183	39	.	.	.
cord-320417-01l27d99	184	1	Even	even	RB
cord-320417-01l27d99	184	2	though	though	IN
cord-320417-01l27d99	184	3	the	the	DT
cord-320417-01l27d99	184	4	full	full	JJ
cord-320417-01l27d99	184	5	picture	picture	NN
cord-320417-01l27d99	184	6	with	with	IN
cord-320417-01l27d99	184	7	the	the	DT
cord-320417-01l27d99	184	8	whole	whole	JJ
cord-320417-01l27d99	184	9	range	range	NN
cord-320417-01l27d99	184	10	of	of	IN
cord-320417-01l27d99	184	11	genome	genome	NN
cord-320417-01l27d99	184	12	length	length	NN
cord-320417-01l27d99	184	13	contains	contain	VBZ
cord-320417-01l27d99	184	14	an	an	DT
cord-320417-01l27d99	184	15	overwhelming	overwhelming	JJ
cord-320417-01l27d99	184	16	amount	amount	NN
cord-320417-01l27d99	184	17	of	of	IN
cord-320417-01l27d99	184	18	information	information	NN
cord-320417-01l27d99	184	19	,	,	,
cord-320417-01l27d99	184	20	a	a	DT
cord-320417-01l27d99	184	21	simplified	simplified	JJ
cord-320417-01l27d99	184	22	snapshot	snapshot	NN
cord-320417-01l27d99	184	23	could	could	MD
cord-320417-01l27d99	184	24	be	be	VB
cord-320417-01l27d99	184	25	generated	generate	VBN
cord-320417-01l27d99	184	26	from	from	IN
cord-320417-01l27d99	184	27	a	a	DT
cord-320417-01l27d99	184	28	subset	subset	NN
cord-320417-01l27d99	184	29	of	of	IN
cord-320417-01l27d99	184	30	the	the	DT
cord-320417-01l27d99	184	31	sequence	sequence	NN
cord-320417-01l27d99	184	32	space	space	NN
cord-320417-01l27d99	184	33	;	;	:
cord-320417-01l27d99	184	34	4	4	LS
cord-320417-01l27d99	184	35	)	)	-RRB-
cord-320417-01l27d99	184	36	it	-PRON-	PRP
cord-320417-01l27d99	184	37	helps	help	VBZ
cord-320417-01l27d99	184	38	identify	identify	VB
cord-320417-01l27d99	184	39	the	the	DT
cord-320417-01l27d99	184	40	emergence	emergence	NN
cord-320417-01l27d99	184	41	of	of	IN
cord-320417-01l27d99	184	42	inter	inter	JJ
cord-320417-01l27d99	184	43	-	-	JJ
cord-320417-01l27d99	184	44	clade	clade	JJ
cord-320417-01l27d99	184	45	hybrid	hybrid	JJ
cord-320417-01l27d99	184	46	viral	viral	JJ
cord-320417-01l27d99	184	47	strains	strain	NNS
cord-320417-01l27d99	184	48	that	that	WDT
cord-320417-01l27d99	184	49	have	have	VBP
cord-320417-01l27d99	184	50	both	both	DT
cord-320417-01l27d99	184	51	positive	positive	JJ
cord-320417-01l27d99	184	52	and	and	CC
cord-320417-01l27d99	184	53	negative	negative	JJ
cord-320417-01l27d99	184	54	potential	potential	JJ
cord-320417-01l27d99	184	55	impacts	impact	NNS
cord-320417-01l27d99	184	56	on	on	IN
cord-320417-01l27d99	184	57	all	all	DT
cord-320417-01l27d99	184	58	of	of	IN
cord-320417-01l27d99	184	59	us	-PRON-	PRP
cord-320417-01l27d99	184	60	.	.	.
cord-320417-01l27d99	185	1	Specimen	specimen	JJ
cord-320417-01l27d99	185	2	collection	collection	NN
cord-320417-01l27d99	185	3	and	and	CC
cord-320417-01l27d99	185	4	testing	testing	NN
cord-320417-01l27d99	185	5	of	of	IN
cord-320417-01l27d99	185	6	individuals	individual	NNS
cord-320417-01l27d99	185	7	with	with	IN
cord-320417-01l27d99	185	8	suspected	suspect	VBN
cord-320417-01l27d99	185	9	COVID-19	covid-19	NN
cord-320417-01l27d99	185	10	at	at	IN
cord-320417-01l27d99	185	11	Mayo	Mayo	NNP
cord-320417-01l27d99	185	12	Clinic	Clinic	NNP
cord-320417-01l27d99	185	13	Rochester	Rochester	NNP
cord-320417-01l27d99	185	14	were	be	VBD
cord-320417-01l27d99	185	15	screened	screen	VBN
cord-320417-01l27d99	185	16	for	for	IN
cord-320417-01l27d99	185	17	SARS	SARS	NNP
cord-320417-01l27d99	185	18	-	-	HYPH
cord-320417-01l27d99	185	19	CoV-2	CoV-2	NNP
cord-320417-01l27d99	185	20	infections	infection	NNS
cord-320417-01l27d99	185	21	as	as	IN
cord-320417-01l27d99	185	22	per	per	IN
cord-320417-01l27d99	185	23	the	the	DT
cord-320417-01l27d99	185	24	CDC	CDC	NNP
cord-320417-01l27d99	185	25	protocol	protocol	NN
cord-320417-01l27d99	185	26	.	.	.
cord-320417-01l27d99	186	1	103	103	CD
cord-320417-01l27d99	186	2	samples	sample	NNS
cord-320417-01l27d99	186	3	of	of	IN
cord-320417-01l27d99	186	4	COVID-19	covid-19	JJ
cord-320417-01l27d99	186	5	positive	positive	JJ
cord-320417-01l27d99	186	6	RNA	RNA	NNP
cord-320417-01l27d99	186	7	extracts	extract	NNS
cord-320417-01l27d99	186	8	collected	collect	VBN
cord-320417-01l27d99	186	9	between	between	IN
cord-320417-01l27d99	186	10	April	April	NNP
cord-320417-01l27d99	186	11	20	20	CD
cord-320417-01l27d99	186	12	,	,	,
cord-320417-01l27d99	186	13	2020	2020	CD
cord-320417-01l27d99	186	14	and	and	CC
cord-320417-01l27d99	186	15	April	April	NNP
cord-320417-01l27d99	186	16	29	29	CD
cord-320417-01l27d99	186	17	,	,	,
cord-320417-01l27d99	186	18	2020	2020	CD
cord-320417-01l27d99	186	19	were	be	VBD
cord-320417-01l27d99	186	20	provided	provide	VBN
cord-320417-01l27d99	186	21	by	by	IN
cord-320417-01l27d99	186	22	the	the	DT
cord-320417-01l27d99	186	23	Department	Department	NNP
cord-320417-01l27d99	186	24	of	of	IN
cord-320417-01l27d99	186	25	Laboratory	Laboratory	NNP
cord-320417-01l27d99	186	26	Medicine	Medicine	NNP
cord-320417-01l27d99	186	27	&	&	CC
cord-320417-01l27d99	186	28	Pathology	Pathology	NNP
cord-320417-01l27d99	186	29	under	under	IN
cord-320417-01l27d99	186	30	Mayo	Mayo	NNP
cord-320417-01l27d99	186	31	Clinic	Clinic	NNP
cord-320417-01l27d99	186	32	's	's	POS
cord-320417-01l27d99	186	33	approved	approve	VBN
cord-320417-01l27d99	186	34	protocol	protocol	NN
cord-320417-01l27d99	186	35	for	for	IN
cord-320417-01l27d99	186	36	COVID-19	COVID-19	NNP
cord-320417-01l27d99	186	37	study	study	NN
cord-320417-01l27d99	186	38	.	.	.
cord-320417-01l27d99	187	1	Detailed	detailed	JJ
cord-320417-01l27d99	187	2	whole	whole	JJ
cord-320417-01l27d99	187	3	genome	genome	NN
cord-320417-01l27d99	187	4	sequencing	sequencing	NN
cord-320417-01l27d99	187	5	and	and	CC
cord-320417-01l27d99	187	6	analysis	analysis	NN
cord-320417-01l27d99	187	7	methodologies	methodology	NNS
cord-320417-01l27d99	187	8	came	come	VBD
cord-320417-01l27d99	187	9	from	from	IN
cord-320417-01l27d99	187	10	the	the	DT
cord-320417-01l27d99	187	11	ARTIC	ARTIC	NNP
cord-320417-01l27d99	187	12	network	network	NN
cord-320417-01l27d99	187	13	6	6	CD
cord-320417-01l27d99	187	14	.	.	.
cord-320417-01l27d99	188	1	Briefly	briefly	RB
cord-320417-01l27d99	188	2	,	,	,
cord-320417-01l27d99	188	3	cDNA	cdna	NN
cord-320417-01l27d99	188	4	synthesis	synthesis	NN
cord-320417-01l27d99	188	5	was	be	VBD
cord-320417-01l27d99	188	6	performed	perform	VBN
cord-320417-01l27d99	188	7	with	with	IN
cord-320417-01l27d99	188	8	a	a	DT
cord-320417-01l27d99	188	9	SuperScript	SuperScript	NNP
cord-320417-01l27d99	188	10	IV	IV	NNP
cord-320417-01l27d99	188	11	First	First	NNP
cord-320417-01l27d99	188	12	Strand	Strand	NNP
cord-320417-01l27d99	188	13	Synthesis	Synthesis	NNP
cord-320417-01l27d99	188	14	Kit	kit	NN
cord-320417-01l27d99	188	15	(	(	-LRB-
cord-320417-01l27d99	188	16	Thermo	Thermo	NNP
cord-320417-01l27d99	188	17	)	)	-RRB-
cord-320417-01l27d99	188	18	according	accord	VBG
cord-320417-01l27d99	188	19	to	to	IN
cord-320417-01l27d99	188	20	manufacturer	manufacturer	NN
cord-320417-01l27d99	188	21	specifications	specification	NNS
cord-320417-01l27d99	188	22	.	.	.
cord-320417-01l27d99	189	1	Direct	direct	JJ
cord-320417-01l27d99	189	2	amplification	amplification	NN
cord-320417-01l27d99	189	3	of	of	IN
cord-320417-01l27d99	189	4	the	the	DT
cord-320417-01l27d99	189	5	viral	viral	JJ
cord-320417-01l27d99	189	6	genome	genome	NN
cord-320417-01l27d99	189	7	cDNA	cdna	NN
cord-320417-01l27d99	189	8	was	be	VBD
cord-320417-01l27d99	189	9	performed	perform	VBN
cord-320417-01l27d99	189	10	using	use	VBG
cord-320417-01l27d99	189	11	multiplexed	multiplexed	JJ
cord-320417-01l27d99	189	12	primer	primer	NN
cord-320417-01l27d99	189	13	pools	pool	NNS
cord-320417-01l27d99	189	14	per	per	IN
cord-320417-01l27d99	189	15	protocols	protocol	NNS
cord-320417-01l27d99	189	16	provided	provide	VBN
cord-320417-01l27d99	189	17	by	by	IN
cord-320417-01l27d99	189	18	the	the	DT
cord-320417-01l27d99	189	19	ARTIC	ARTIC	NNP
cord-320417-01l27d99	189	20	Network	Network	NNP
cord-320417-01l27d99	189	21	(	(	-LRB-
cord-320417-01l27d99	189	22	V3	V3	NNP
cord-320417-01l27d99	189	23	)	)	-RRB-
cord-320417-01l27d99	189	24	.	.	.
cord-320417-01l27d99	190	1	The	the	DT
cord-320417-01l27d99	190	2	sequencing	sequencing	NN
cord-320417-01l27d99	190	3	library	library	NN
cord-320417-01l27d99	190	4	preparation	preparation	NN
cord-320417-01l27d99	190	5	protocol	protocol	NN
cord-320417-01l27d99	190	6	was	be	VBD
cord-320417-01l27d99	190	7	adapted	adapt	VBN
cord-320417-01l27d99	190	8	from	from	IN
cord-320417-01l27d99	190	9	the	the	DT
cord-320417-01l27d99	190	10	ARTIC	ARTIC	NNP
cord-320417-01l27d99	190	11	Network	Network	NNP
cord-320417-01l27d99	190	12	's	's	POS
cord-320417-01l27d99	190	13	protocol	protocol	NN
cord-320417-01l27d99	190	14	for	for	IN
cord-320417-01l27d99	190	15	ONT	ONT	NNP
cord-320417-01l27d99	190	16	"	"	``
cord-320417-01l27d99	190	17	PCR	PCR	NNP
cord-320417-01l27d99	190	18	tiling	tiling	NN
cord-320417-01l27d99	190	19	of	of	IN
cord-320417-01l27d99	190	20	COVID-19	COVID-19	NNP
cord-320417-01l27d99	190	21	virus	virus	NN
cord-320417-01l27d99	190	22	"	"	''
cord-320417-01l27d99	190	23	.	.	.
cord-320417-01l27d99	191	1	Adapter	adapter	NN
cord-320417-01l27d99	191	2	ligation	ligation	NN
cord-320417-01l27d99	191	3	and	and	CC
cord-320417-01l27d99	191	4	cleanup	cleanup	NN
cord-320417-01l27d99	191	5	were	be	VBD
cord-320417-01l27d99	191	6	performed	perform	VBN
cord-320417-01l27d99	191	7	using	use	VBG
cord-320417-01l27d99	191	8	the	the	DT
cord-320417-01l27d99	191	9	ONT	ONT	NNP
cord-320417-01l27d99	191	10	's	's	POS
cord-320417-01l27d99	191	11	Ligation	Ligation	NNP
cord-320417-01l27d99	191	12	Sequencing	Sequencing	NNP
cord-320417-01l27d99	191	13	kit	kit	NN
cord-320417-01l27d99	191	14	(	(	-LRB-
cord-320417-01l27d99	191	15	SQK	SQK	NNP
cord-320417-01l27d99	191	16	-	-	HYPH
cord-320417-01l27d99	191	17	LSK109	LSK109	NNP
cord-320417-01l27d99	191	18	)	)	-RRB-
cord-320417-01l27d99	191	19	according	accord	VBG
cord-320417-01l27d99	191	20	to	to	IN
cord-320417-01l27d99	191	21	manufacturer	manufacturer	NN
cord-320417-01l27d99	191	22	specifications	specification	NNS
cord-320417-01l27d99	191	23	.	.	.
cord-320417-01l27d99	192	1	Libraries	library	NNS
cord-320417-01l27d99	192	2	were	be	VBD
cord-320417-01l27d99	192	3	sequenced	sequence	VBN
cord-320417-01l27d99	192	4	on	on	IN
cord-320417-01l27d99	192	5	ONT	ONT	NNP
cord-320417-01l27d99	192	6	's	's	POS
cord-320417-01l27d99	192	7	MinION	minion	NN
cord-320417-01l27d99	192	8	device	device	NN
cord-320417-01l27d99	192	9	using	use	VBG
cord-320417-01l27d99	192	10	Type	Type	NNP
cord-320417-01l27d99	192	11	R9.4.1	R9.4.1	NNP
cord-320417-01l27d99	192	12	flow	flow	NN
cord-320417-01l27d99	192	13	cells	cell	NNS
cord-320417-01l27d99	192	14	(	(	-LRB-
cord-320417-01l27d99	192	15	FLO	FLO	NNP
cord-320417-01l27d99	192	16	-	-	HYPH
cord-320417-01l27d99	192	17	MIN106D	MIN106D	NNP
cord-320417-01l27d99	192	18	)	)	-RRB-
cord-320417-01l27d99	192	19	.	.	.
cord-320417-01l27d99	193	1	Raw	raw	JJ
cord-320417-01l27d99	193	2	sequencing	sequencing	NN
cord-320417-01l27d99	193	3	data	datum	NNS
cord-320417-01l27d99	193	4	were	be	VBD
cord-320417-01l27d99	193	5	acquired	acquire	VBN
cord-320417-01l27d99	193	6	using	use	VBG
cord-320417-01l27d99	193	7	ONT	ONT	NNP
cord-320417-01l27d99	193	8	's	's	POS
cord-320417-01l27d99	193	9	MinKnow	MinKnow	NNP
cord-320417-01l27d99	193	10	software	software	NN
cord-320417-01l27d99	193	11	(	(	-LRB-
cord-320417-01l27d99	193	12	3.6.5	3.6.5	NNS
cord-320417-01l27d99	193	13	)	)	-RRB-
cord-320417-01l27d99	193	14	running	run	VBG
cord-320417-01l27d99	193	15	on	on	IN
cord-320417-01l27d99	193	16	a	a	DT
cord-320417-01l27d99	193	17	custom	custom	NN
cord-320417-01l27d99	193	18	-	-	HYPH
cord-320417-01l27d99	193	19	built	build	VBN
cord-320417-01l27d99	193	20	Dell	Dell	NNP
cord-320417-01l27d99	193	21	Precision	Precision	NNP
cord-320417-01l27d99	193	22	T5600	T5600	NNP
cord-320417-01l27d99	193	23	desktop	desktop	NN
cord-320417-01l27d99	193	24	computer	computer	NN
cord-320417-01l27d99	193	25	equipped	equip	VBN
cord-320417-01l27d99	193	26	with	with	IN
cord-320417-01l27d99	193	27	an	an	DT
cord-320417-01l27d99	193	28	NVIDIA	NVIDIA	NNP
cord-320417-01l27d99	193	29	RTX	RTX	NNP
cord-320417-01l27d99	193	30	2080Ti	2080Ti	NNP
cord-320417-01l27d99	193	31	graphic	graphic	NN
cord-320417-01l27d99	193	32	processing	processing	NN
cord-320417-01l27d99	193	33	unit	unit	NN
cord-320417-01l27d99	193	34	.	.	.
cord-320417-01l27d99	194	1	Fast	fast	JJ
cord-320417-01l27d99	194	2	live	live	RB
cord-320417-01l27d99	194	3	-	-	HYPH
cord-320417-01l27d99	194	4	basecalling	basecalling	NN
cord-320417-01l27d99	194	5	was	be	VBD
cord-320417-01l27d99	194	6	enabled	enable	VBN
cord-320417-01l27d99	194	7	for	for	IN
cord-320417-01l27d99	194	8	barcode	barcode	NN
cord-320417-01l27d99	194	9	detections	detection	NNS
cord-320417-01l27d99	194	10	.	.	.
cord-320417-01l27d99	195	1	High	high	JJ
cord-320417-01l27d99	195	2	-	-	HYPH
cord-320417-01l27d99	195	3	accuracy	accuracy	NN
cord-320417-01l27d99	195	4	basecalling	basecalling	NN
cord-320417-01l27d99	195	5	of	of	IN
cord-320417-01l27d99	195	6	nanopore	nanopore	NNP
cord-320417-01l27d99	195	7	reads	read	VBZ
cord-320417-01l27d99	195	8	was	be	VBD
cord-320417-01l27d99	195	9	later	later	RB
cord-320417-01l27d99	195	10	performed	perform	VBN
cord-320417-01l27d99	195	11	using	use	VBG
cord-320417-01l27d99	195	12	Guppy	Guppy	NNP
cord-320417-01l27d99	195	13	v3.4.5	v3.4.5	NNP
cord-320417-01l27d99	195	14	on	on	IN
cord-320417-01l27d99	195	15	an	an	DT
cord-320417-01l27d99	195	16	HP	HP	NNP
cord-320417-01l27d99	195	17	Prodesk830	Prodesk830	NNP
cord-320417-01l27d99	195	18	computer	computer	NN
cord-320417-01l27d99	195	19	equipped	equip	VBN
cord-320417-01l27d99	195	20	with	with	IN
cord-320417-01l27d99	195	21	an	an	DT
cord-320417-01l27d99	195	22	NVIDIA	NVIDIA	NNP
cord-320417-01l27d99	195	23	RTX	RTX	NNP
cord-320417-01l27d99	195	24	2060	2060	CD
cord-320417-01l27d99	195	25	GPU	GPU	NNP
cord-320417-01l27d99	195	26	.	.	.
cord-320417-01l27d99	196	1	Automatic	automatic	JJ
cord-320417-01l27d99	196	2	genome	genome	NN
cord-320417-01l27d99	196	3	analyses	analysis	NNS
cord-320417-01l27d99	196	4	were	be	VBD
cord-320417-01l27d99	196	5	performed	perform	VBN
cord-320417-01l27d99	196	6	with	with	IN
cord-320417-01l27d99	196	7	the	the	DT
cord-320417-01l27d99	196	8	ARTIC	ARTIC	NNP
cord-320417-01l27d99	196	9	COVID-19	COVID-19	NNP
cord-320417-01l27d99	196	10	nextflow	nextflow	NNP
cord-320417-01l27d99	196	11	software	software	NN
cord-320417-01l27d99	196	12	package	package	NN
cord-320417-01l27d99	196	13	for	for	IN
cord-320417-01l27d99	196	14	read	read	NN
cord-320417-01l27d99	196	15	-	-	HYPH
cord-320417-01l27d99	196	16	quality	quality	NN
cord-320417-01l27d99	196	17	score	score	NN
cord-320417-01l27d99	196	18	filtering	filtering	NN
cord-320417-01l27d99	196	19	,	,	,
cord-320417-01l27d99	196	20	reference	reference	NN
cord-320417-01l27d99	196	21	alignment	alignment	NN
cord-320417-01l27d99	196	22	,	,	,
cord-320417-01l27d99	196	23	and	and	CC
cord-320417-01l27d99	196	24	consensus	consensus	NN
cord-320417-01l27d99	196	25	sequence	sequence	NN
cord-320417-01l27d99	196	26	generation	generation	NN
cord-320417-01l27d99	196	27	.	.	.
cord-320417-01l27d99	197	1	The	the	DT
cord-320417-01l27d99	197	2	evolutionary	evolutionary	JJ
cord-320417-01l27d99	197	3	history	history	NN
cord-320417-01l27d99	197	4	of	of	IN
cord-320417-01l27d99	197	5	SARS	SARS	NNP
cord-320417-01l27d99	197	6	-	-	HYPH
cord-320417-01l27d99	197	7	CoV-2	CoV-2	NNP
cord-320417-01l27d99	197	8	was	be	VBD
cord-320417-01l27d99	197	9	inferred	infer	VBN
cord-320417-01l27d99	197	10	using	use	VBG
cord-320417-01l27d99	197	11	a	a	DT
cord-320417-01l27d99	197	12	Bayesian	bayesian	JJ
cord-320417-01l27d99	197	13	approach	approach	NN
cord-320417-01l27d99	197	14	,	,	,
cord-320417-01l27d99	197	15	implemented	implement	VBN
cord-320417-01l27d99	197	16	through	through	IN
cord-320417-01l27d99	197	17	the	the	DT
cord-320417-01l27d99	197	18	Markov	Markov	NNP
cord-320417-01l27d99	197	19	chain	chain	NN
cord-320417-01l27d99	197	20	Monte	Monte	NNP
cord-320417-01l27d99	197	21	Carlo	Carlo	NNP
cord-320417-01l27d99	197	22	framework	framework	NN
cord-320417-01l27d99	197	23	available	available	JJ
cord-320417-01l27d99	197	24	in	in	IN
cord-320417-01l27d99	197	25	BEAST	BEAST	NNP
cord-320417-01l27d99	197	26	1.10.4	1.10.4	CD
cord-320417-01l27d99	197	27	31	31	CD
cord-320417-01l27d99	197	28	,	,	,
cord-320417-01l27d99	197	29	utilizing	utilize	VBG
cord-320417-01l27d99	197	30	the	the	DT
cord-320417-01l27d99	197	31	BEAGLE	BEAGLE	NNP
cord-320417-01l27d99	197	32	library	library	NN
cord-320417-01l27d99	197	33	v3	v3	NNP
cord-320417-01l27d99	197	34	32	32	CD
cord-320417-01l27d99	197	35	to	to	TO
cord-320417-01l27d99	197	36	increase	increase	VB
cord-320417-01l27d99	197	37	computational	computational	JJ
cord-320417-01l27d99	197	38	performance	performance	NN
cord-320417-01l27d99	197	39	.	.	.
cord-320417-01l27d99	198	1	For	for	IN
cord-320417-01l27d99	198	2	poorly	poorly	RB
cord-320417-01l27d99	198	3	sampled	sample	VBN
cord-320417-01l27d99	198	4	locations	location	NNS
cord-320417-01l27d99	198	5	,	,	,
cord-320417-01l27d99	198	6	the	the	DT
cord-320417-01l27d99	198	7	Bayesian	bayesian	JJ
cord-320417-01l27d99	198	8	inference	inference	NN
cord-320417-01l27d99	198	9	of	of	IN
cord-320417-01l27d99	198	10	unsampled	unsampled	JJ
cord-320417-01l27d99	198	11	genomes	genome	NNS
cord-320417-01l27d99	198	12	was	be	VBD
cord-320417-01l27d99	198	13	associated	associate	VBN
cord-320417-01l27d99	198	14	with	with	IN
cord-320417-01l27d99	198	15	an	an	DT
cord-320417-01l27d99	198	16	epidemiologically	epidemiologically	RB
cord-320417-01l27d99	198	17	informed	informed	JJ
cord-320417-01l27d99	198	18	sampling	sampling	NN
cord-320417-01l27d99	198	19	time	time	NN
cord-320417-01l27d99	198	20	and	and	CC
cord-320417-01l27d99	198	21	location	location	NN
cord-320417-01l27d99	198	22	,	,	,
cord-320417-01l27d99	198	23	but	but	CC
cord-320417-01l27d99	198	24	not	not	RB
cord-320417-01l27d99	198	25	with	with	IN
cord-320417-01l27d99	198	26	observed	observed	JJ
cord-320417-01l27d99	198	27	sequence	sequence	NN
cord-320417-01l27d99	198	28	data	datum	NNS
cord-320417-01l27d99	198	29	.	.	.
cord-320417-01l27d99	199	1	The	the	DT
cord-320417-01l27d99	199	2	phylogenetic	phylogenetic	JJ
cord-320417-01l27d99	199	3	tree	tree	NN
cord-320417-01l27d99	199	4	was	be	VBD
cord-320417-01l27d99	199	5	then	then	RB
cord-320417-01l27d99	199	6	plotted	plot	VBN
cord-320417-01l27d99	199	7	using	use	VBG
cord-320417-01l27d99	199	8	the	the	DT
cord-320417-01l27d99	199	9	FigTree	FigTree	NNP
cord-320417-01l27d99	199	10	(	(	-LRB-
cord-320417-01l27d99	199	11	v1.4.4	v1.4.4	NNP
cord-320417-01l27d99	199	12	)	)	-RRB-
cord-320417-01l27d99	200	1	accompany	accompany	VB
cord-320417-01l27d99	200	2	with	with	IN
cord-320417-01l27d99	200	3	the	the	DT
cord-320417-01l27d99	200	4	BEAST	BEAST	NNP
cord-320417-01l27d99	200	5	package	package	NN
cord-320417-01l27d99	200	6	.	.	.
cord-320417-01l27d99	201	1	The	the	DT
cord-320417-01l27d99	201	2	consensus	consensus	NN
cord-320417-01l27d99	201	3	genome	genome	NN
cord-320417-01l27d99	201	4	sequences	sequence	NNS
cord-320417-01l27d99	201	5	have	have	VBP
cord-320417-01l27d99	201	6	not	not	RB
cord-320417-01l27d99	201	7	been	be	VBN
cord-320417-01l27d99	201	8	deposited	deposit	VBN
cord-320417-01l27d99	201	9	to	to	IN
cord-320417-01l27d99	201	10	any	any	DT
cord-320417-01l27d99	201	11	public	public	JJ
cord-320417-01l27d99	201	12	database	database	NN
cord-320417-01l27d99	201	13	,	,	,
cord-320417-01l27d99	201	14	pending	pende	VBG
cord-320417-01l27d99	201	15	institutional	institutional	JJ
cord-320417-01l27d99	201	16	approval	approval	NN
cord-320417-01l27d99	201	17	.	.	.
cord-320417-01l27d99	202	1	About	about	IN
cord-320417-01l27d99	202	2	18,000	18,000	CD
cord-320417-01l27d99	202	3	SARS	SARS	NNP
cord-320417-01l27d99	202	4	-	-	HYPH
cord-320417-01l27d99	202	5	CoV-2	CoV-2	NNP
cord-320417-01l27d99	202	6	genome	genome	NN
cord-320417-01l27d99	202	7	sequences	sequence	NNS
cord-320417-01l27d99	202	8	were	be	VBD
cord-320417-01l27d99	202	9	downloaded	download	VBN
cord-320417-01l27d99	202	10	from	from	IN
cord-320417-01l27d99	202	11	NCBI	NCBI	NNP
cord-320417-01l27d99	202	12	on	on	IN
cord-320417-01l27d99	202	13	September	September	NNP
cord-320417-01l27d99	202	14	2	2	CD
cord-320417-01l27d99	202	15	nd	nd	NNP
cord-320417-01l27d99	202	16	,	,	,
cord-320417-01l27d99	202	17	from	from	IN
cord-320417-01l27d99	202	18	which	which	WDT
cord-320417-01l27d99	202	19	500	500	CD
cord-320417-01l27d99	202	20	incomplete	incomplete	JJ
cord-320417-01l27d99	202	21	sequences	sequence	NNS
cord-320417-01l27d99	202	22	with	with	IN
cord-320417-01l27d99	202	23	less	less	JJR
cord-320417-01l27d99	202	24	than	than	IN
cord-320417-01l27d99	202	25	two	two	CD
cord-320417-01l27d99	202	26	-	-	HYPH
cord-320417-01l27d99	202	27	thirds	third	NNS
cord-320417-01l27d99	202	28	of	of	IN
cord-320417-01l27d99	202	29	the	the	DT
cord-320417-01l27d99	202	30	usual	usual	JJ
cord-320417-01l27d99	202	31	~30,000	~30,000	NNP
cord-320417-01l27d99	202	32	bp	bp	NNP
cord-320417-01l27d99	202	33	genome	genome	NN
cord-320417-01l27d99	202	34	length	length	NN
cord-320417-01l27d99	202	35	were	be	VBD
cord-320417-01l27d99	202	36	discarded	discard	VBN
cord-320417-01l27d99	202	37	.	.	.
cord-320417-01l27d99	203	1	Each	each	DT
cord-320417-01l27d99	203	2	of	of	IN
cord-320417-01l27d99	203	3	the	the	DT
cord-320417-01l27d99	203	4	remaining	remain	VBG
cord-320417-01l27d99	203	5	17,500	17,500	CD
cord-320417-01l27d99	203	6	genome	genome	NN
cord-320417-01l27d99	203	7	sequences	sequence	NNS
cord-320417-01l27d99	203	8	was	be	VBD
cord-320417-01l27d99	203	9	individually	individually	RB
cord-320417-01l27d99	203	10	aligned	align	VBN
cord-320417-01l27d99	203	11	to	to	IN
cord-320417-01l27d99	203	12	the	the	DT
cord-320417-01l27d99	203	13	reference	reference	NN
cord-320417-01l27d99	203	14	SARS	SARS	NNP
cord-320417-01l27d99	203	15	-	-	HYPH
cord-320417-01l27d99	203	16	CoV-2	CoV-2	NNP
cord-320417-01l27d99	203	17	genome	genome	NN
cord-320417-01l27d99	204	1	(	(	-LRB-
cord-320417-01l27d99	204	2	NC_045512.2	NC_045512.2	NNP
cord-320417-01l27d99	204	3	)	)	-RRB-
cord-320417-01l27d99	204	4	using	use	VBG
cord-320417-01l27d99	204	5	the	the	DT
cord-320417-01l27d99	204	6	NEEDLE	needle	NN
cord-320417-01l27d99	204	7	tool	tool	NN
cord-320417-01l27d99	204	8	(	(	-LRB-
cord-320417-01l27d99	204	9	Needleman	Needleman	NNP
cord-320417-01l27d99	204	10	-	-	HYPH
cord-320417-01l27d99	204	11	Wunsch	Wunsch	NNP
cord-320417-01l27d99	204	12	global	global	JJ
cord-320417-01l27d99	204	13	alignment	alignment	NN
cord-320417-01l27d99	204	14	of	of	IN
cord-320417-01l27d99	204	15	two	two	CD
cord-320417-01l27d99	204	16	sequences	sequence	NNS
cord-320417-01l27d99	204	17	)	)	-RRB-
cord-320417-01l27d99	204	18	from	from	IN
cord-320417-01l27d99	204	19	the	the	DT
cord-320417-01l27d99	204	20	EMBOSS	EMBOSS	NNP
cord-320417-01l27d99	204	21	package	package	NN
cord-320417-01l27d99	204	22	v6.6.0.0	v6.6.0.0	NN
cord-320417-01l27d99	204	23	33	33	CD
cord-320417-01l27d99	204	24	.	.	.
cord-320417-01l27d99	205	1	All	all	DT
cord-320417-01l27d99	205	2	nucleotide	nucleotide	JJ
cord-320417-01l27d99	205	3	positions	position	NNS
cord-320417-01l27d99	205	4	were	be	VBD
cord-320417-01l27d99	205	5	based	base	VBN
cord-320417-01l27d99	205	6	on	on	IN
cord-320417-01l27d99	205	7	the	the	DT
cord-320417-01l27d99	205	8	reference	reference	NN
cord-320417-01l27d99	205	9	genome	genome	NN
cord-320417-01l27d99	205	10	.	.	.
cord-320417-01l27d99	206	1	Variants	variant	NNS
cord-320417-01l27d99	206	2	of	of	IN
cord-320417-01l27d99	206	3	SNPs	SNPs	NNPS
cord-320417-01l27d99	206	4	were	be	VBD
cord-320417-01l27d99	206	5	named	name	VBN
cord-320417-01l27d99	206	6	using	use	VBG
cord-320417-01l27d99	206	7	the	the	DT
cord-320417-01l27d99	206	8	SNP	SNP	NNP
cord-320417-01l27d99	206	9	-	-	HYPH
cord-320417-01l27d99	206	10	sites	site	NNS
cord-320417-01l27d99	206	11	software	software	NN
cord-320417-01l27d99	206	12	34	34	CD
cord-320417-01l27d99	206	13	.	.	.
cord-320417-01l27d99	207	1	Custom	custom	NN
cord-320417-01l27d99	207	2	scripts	script	NNS
cord-320417-01l27d99	207	3	in	in	IN
cord-320417-01l27d99	207	4	Perl	Perl	NNP
cord-320417-01l27d99	207	5	,	,	,
cord-320417-01l27d99	207	6	Python	Python	NNP
cord-320417-01l27d99	207	7	,	,	,
cord-320417-01l27d99	207	8	and	and	CC
cord-320417-01l27d99	207	9	R	r	NN
cord-320417-01l27d99	207	10	were	be	VBD
cord-320417-01l27d99	207	11	used	use	VBN
cord-320417-01l27d99	207	12	for	for	IN
cord-320417-01l27d99	207	13	various	various	JJ
cord-320417-01l27d99	207	14	calculations	calculation	NNS
cord-320417-01l27d99	207	15	and	and	CC
cord-320417-01l27d99	207	16	graphics	graphic	NNS
cord-320417-01l27d99	207	17	.	.	.
cord-320417-01l27d99	207	18	 	 	_SP
cord-320417-01l27d99	208	1	A	a	DT
cord-320417-01l27d99	208	2	pneumonia	pneumonia	NN
cord-320417-01l27d99	208	3	outbreak	outbreak	NN
cord-320417-01l27d99	208	4	associated	associate	VBN
cord-320417-01l27d99	208	5	with	with	IN
cord-320417-01l27d99	208	6	a	a	DT
cord-320417-01l27d99	208	7	new	new	JJ
cord-320417-01l27d99	208	8	coronavirus	coronavirus	NN
cord-320417-01l27d99	208	9	of	of	IN
cord-320417-01l27d99	208	10	probable	probable	JJ
cord-320417-01l27d99	208	11	bat	bat	NN
cord-320417-01l27d99	208	12	origin	origin	NN
cord-320417-01l27d99	209	1	A	a	DT
cord-320417-01l27d99	209	2	new	new	JJ
cord-320417-01l27d99	209	3	coronavirus	coronavirus	NN
cord-320417-01l27d99	209	4	associated	associate	VBN
cord-320417-01l27d99	209	5	with	with	IN
cord-320417-01l27d99	209	6	human	human	JJ
cord-320417-01l27d99	209	7	respiratory	respiratory	JJ
cord-320417-01l27d99	209	8	disease	disease	NN
cord-320417-01l27d99	209	9	in	in	IN
cord-320417-01l27d99	209	10	China	China	NNP
cord-320417-01l27d99	209	11	Evolution	Evolution	NNP
cord-320417-01l27d99	209	12	of	of	IN
cord-320417-01l27d99	209	13	the	the	DT
cord-320417-01l27d99	209	14	novel	novel	JJ
cord-320417-01l27d99	209	15	coronavirus	coronavirus	NN
cord-320417-01l27d99	209	16	from	from	IN
cord-320417-01l27d99	209	17	the	the	DT
cord-320417-01l27d99	209	18	ongoing	ongoing	JJ
cord-320417-01l27d99	209	19	Wuhan	Wuhan	NNP
cord-320417-01l27d99	209	20	outbreak	outbreak	NN
cord-320417-01l27d99	209	21	and	and	CC
cord-320417-01l27d99	209	22	modeling	modeling	NN
cord-320417-01l27d99	209	23	of	of	IN
cord-320417-01l27d99	209	24	its	-PRON-	PRP$
cord-320417-01l27d99	209	25	spike	spike	NN
cord-320417-01l27d99	209	26	protein	protein	NN
cord-320417-01l27d99	209	27	for	for	IN
cord-320417-01l27d99	209	28	risk	risk	NN
cord-320417-01l27d99	209	29	of	of	IN
cord-320417-01l27d99	209	30	human	human	JJ
cord-320417-01l27d99	209	31	transmission	transmission	NN
cord-320417-01l27d99	210	1	The	the	DT
cord-320417-01l27d99	210	2	proximal	proximal	JJ
cord-320417-01l27d99	210	3	origin	origin	NN
cord-320417-01l27d99	210	4	of	of	IN
cord-320417-01l27d99	210	5	SARS	SARS	NNP
cord-320417-01l27d99	210	6	-	-	HYPH
cord-320417-01l27d99	210	7	CoV-2	CoV-2	NNP
cord-320417-01l27d99	210	8	Genomic	genomic	JJ
cord-320417-01l27d99	210	9	characterisation	characterisation	NN
cord-320417-01l27d99	210	10	and	and	CC
cord-320417-01l27d99	210	11	epidemiology	epidemiology	NN
cord-320417-01l27d99	210	12	of	of	IN
cord-320417-01l27d99	210	13	2019	2019	CD
cord-320417-01l27d99	210	14	novel	novel	JJ
cord-320417-01l27d99	210	15	coronavirus	coronavirus	NN
cord-320417-01l27d99	210	16	:	:	:
cord-320417-01l27d99	210	17	implications	implication	NNS
cord-320417-01l27d99	210	18	for	for	IN
cord-320417-01l27d99	210	19	virus	virus	NN
cord-320417-01l27d99	210	20	origins	origin	NNS
cord-320417-01l27d99	210	21	and	and	CC
cord-320417-01l27d99	210	22	receptor	receptor	NN
cord-320417-01l27d99	210	23	binding	bind	VBG
cord-320417-01l27d99	210	24	SARS	SARS	NNP
cord-320417-01l27d99	210	25	-	-	HYPH
cord-320417-01l27d99	210	26	CoV-2	CoV-2	NNP
cord-320417-01l27d99	210	27	genomes	genome	NNS
cord-320417-01l27d99	210	28	recovered	recover	VBN
cord-320417-01l27d99	210	29	by	by	IN
cord-320417-01l27d99	210	30	long	long	JJ
cord-320417-01l27d99	210	31	amplicon	amplicon	NN
cord-320417-01l27d99	210	32	tiling	tiling	NN
cord-320417-01l27d99	210	33	multiplex	multiplex	NN
cord-320417-01l27d99	210	34	approach	approach	NN
cord-320417-01l27d99	210	35	using	use	VBG
cord-320417-01l27d99	210	36	nanopore	nanopore	JJ
cord-320417-01l27d99	210	37	sequencing	sequencing	NN
cord-320417-01l27d99	210	38	and	and	CC
cord-320417-01l27d99	210	39	applicable	applicable	JJ
cord-320417-01l27d99	210	40	to	to	IN
cord-320417-01l27d99	210	41	other	other	JJ
cord-320417-01l27d99	210	42	sequencing	sequencing	NN
cord-320417-01l27d99	210	43	platforms	platform	NNS
cord-320417-01l27d99	211	1	Geographic	geographic	JJ
cord-320417-01l27d99	211	2	and	and	CC
cord-320417-01l27d99	211	3	Genomic	Genomic	NNP
cord-320417-01l27d99	211	4	Distribution	Distribution	NNP
cord-320417-01l27d99	211	5	of	of	IN
cord-320417-01l27d99	211	6	SARS	SARS	NNP
cord-320417-01l27d99	211	7	-	-	HYPH
cord-320417-01l27d99	211	8	CoV-2	CoV-2	NNP
cord-320417-01l27d99	211	9	Mutations	Mutations	NNPS
cord-320417-01l27d99	211	10	Mechanisms	Mechanisms	NNPS
cord-320417-01l27d99	211	11	of	of	IN
cord-320417-01l27d99	211	12	viral	viral	JJ
cord-320417-01l27d99	211	13	mutation	mutation	NN
cord-320417-01l27d99	211	14	Recombination	recombination	NN
cord-320417-01l27d99	211	15	of	of	IN
cord-320417-01l27d99	211	16	Globally	globally	RB
cord-320417-01l27d99	211	17	Circulating	circulate	VBG
cord-320417-01l27d99	211	18	Varicella	varicella	NN
cord-320417-01l27d99	211	19	-	-	HYPH
cord-320417-01l27d99	211	20	Zoster	Zoster	NNP
cord-320417-01l27d99	211	21	Virus	virus	NN
cord-320417-01l27d99	211	22	Analyses	analysis	NNS
cord-320417-01l27d99	211	23	of	of	IN
cord-320417-01l27d99	211	24	a	a	DT
cord-320417-01l27d99	211	25	whole	whole	JJ
cord-320417-01l27d99	211	26	-	-	HYPH
cord-320417-01l27d99	211	27	genome	genome	NN
cord-320417-01l27d99	211	28	inter	inter	JJ
cord-320417-01l27d99	211	29	-	-	JJ
cord-320417-01l27d99	211	30	clade	clade	JJ
cord-320417-01l27d99	211	31	recombination	recombination	NN
cord-320417-01l27d99	211	32	map	map	NN
cord-320417-01l27d99	211	33	of	of	IN
cord-320417-01l27d99	211	34	hepatitis	hepatitis	NNP
cord-320417-01l27d99	211	35	delta	delta	NNP
cord-320417-01l27d99	211	36	virus	virus	NN
cord-320417-01l27d99	211	37	suggest	suggest	VBP
cord-320417-01l27d99	211	38	a	a	DT
cord-320417-01l27d99	211	39	host	host	NN
cord-320417-01l27d99	211	40	polymerase	polymerase	NN
cord-320417-01l27d99	211	41	-	-	HYPH
cord-320417-01l27d99	211	42	driven	drive	VBN
cord-320417-01l27d99	211	43	and	and	CC
cord-320417-01l27d99	211	44	viral	viral	JJ
cord-320417-01l27d99	211	45	RNA	RNA	NNP
cord-320417-01l27d99	211	46	structure	structure	NN
cord-320417-01l27d99	211	47	-	-	HYPH
cord-320417-01l27d99	211	48	promoted	promote	VBN
cord-320417-01l27d99	211	49	templateswitching	templateswitching	NN
cord-320417-01l27d99	211	50	mechanism	mechanism	NN
cord-320417-01l27d99	211	51	for	for	IN
cord-320417-01l27d99	211	52	viral	viral	JJ
cord-320417-01l27d99	211	53	RNA	RNA	NNP
cord-320417-01l27d99	211	54	recombination	recombination	NN
cord-320417-01l27d99	212	1	First	first	JJ
cord-320417-01l27d99	212	2	natural	natural	JJ
cord-320417-01l27d99	212	3	crossover	crossover	NN
cord-320417-01l27d99	212	4	recombination	recombination	NN
cord-320417-01l27d99	212	5	between	between	IN
cord-320417-01l27d99	212	6	two	two	CD
cord-320417-01l27d99	212	7	distinct	distinct	JJ
cord-320417-01l27d99	212	8	species	specie	NNS
cord-320417-01l27d99	212	9	of	of	IN
cord-320417-01l27d99	212	10	the	the	DT
cord-320417-01l27d99	212	11	family	family	NN
cord-320417-01l27d99	212	12	Closteroviridae	Closteroviridae	NNP
cord-320417-01l27d99	212	13	leads	lead	VBZ
cord-320417-01l27d99	212	14	to	to	IN
cord-320417-01l27d99	212	15	the	the	DT
cord-320417-01l27d99	212	16	emergence	emergence	NN
cord-320417-01l27d99	212	17	of	of	IN
cord-320417-01l27d99	212	18	a	a	DT
cord-320417-01l27d99	212	19	new	new	JJ
cord-320417-01l27d99	212	20	disease	disease	NN
cord-320417-01l27d99	212	21	Novel	Novel	NNP
cord-320417-01l27d99	212	22	Coronavirus	Coronavirus	NNP
cord-320417-01l27d99	212	23	Is	be	VBZ
cord-320417-01l27d99	212	24	Undergoing	undergo	VBG
cord-320417-01l27d99	212	25	Active	Active	NNP
cord-320417-01l27d99	212	26	Recombination	Recombination	NNP
cord-320417-01l27d99	212	27	Identification	Identification	NNP
cord-320417-01l27d99	212	28	of	of	IN
cord-320417-01l27d99	212	29	SARS	SARS	NNP
cord-320417-01l27d99	212	30	-	-	HYPH
cord-320417-01l27d99	212	31	CoV-2	CoV-2	NNP
cord-320417-01l27d99	212	32	recombinant	recombinant	JJ
cord-320417-01l27d99	212	33	genomes	genome	NNS
cord-320417-01l27d99	212	34	Rapid	Rapid	NNP
cord-320417-01l27d99	212	35	detection	detection	NN
cord-320417-01l27d99	212	36	of	of	IN
cord-320417-01l27d99	212	37	inter	inter	JJ
cord-320417-01l27d99	212	38	-	-	JJ
cord-320417-01l27d99	212	39	clade	clade	JJ
cord-320417-01l27d99	212	40	recombination	recombination	NN
cord-320417-01l27d99	212	41	in	in	IN
cord-320417-01l27d99	212	42	SARS	SARS	NNP
cord-320417-01l27d99	212	43	-	-	HYPH
cord-320417-01l27d99	212	44	CoV-2	CoV-2	NNP
cord-320417-01l27d99	212	45	with	with	IN
cord-320417-01l27d99	212	46	Bolotie	Bolotie	NNP
cord-320417-01l27d99	212	47	Running	Running	NNP
cord-320417-01l27d99	212	48	title	title	NN
cord-320417-01l27d99	212	49	:	:	:
cord-320417-01l27d99	212	50	Surveillance	surveillance	NN
cord-320417-01l27d99	212	51	system	system	NN
cord-320417-01l27d99	212	52	for	for	IN
cord-320417-01l27d99	212	53	rapid	rapid	JJ
cord-320417-01l27d99	212	54	identification	identification	NN
cord-320417-01l27d99	212	55	of	of	IN
cord-320417-01l27d99	212	56	recombinant	recombinant	JJ
cord-320417-01l27d99	212	57	sequences	sequence	NNS
cord-320417-01l27d99	212	58	in	in	IN
cord-320417-01l27d99	212	59	viral	viral	JJ
cord-320417-01l27d99	212	60	genomes	genome	NNS
cord-320417-01l27d99	212	61	with	with	IN
cord-320417-01l27d99	212	62	low	low	JJ
cord-320417-01l27d99	212	63	levels	level	NNS
cord-320417-01l27d99	212	64	of	of	IN
cord-320417-01l27d99	212	65	divergence	divergence	NN
cord-320417-01l27d99	212	66	Recombination	Recombination	NNP
cord-320417-01l27d99	212	67	in	in	IN
cord-320417-01l27d99	212	68	AIDS	AIDS	NNP
cord-320417-01l27d99	212	69	viruses	virus	NNS
cord-320417-01l27d99	213	1	RDP4	rdp4	NN
cord-320417-01l27d99	213	2	:	:	:
cord-320417-01l27d99	213	3	Detection	detection	NN
cord-320417-01l27d99	213	4	and	and	CC
cord-320417-01l27d99	213	5	analysis	analysis	NN
cord-320417-01l27d99	213	6	of	of	IN
cord-320417-01l27d99	213	7	recombination	recombination	NN
cord-320417-01l27d99	213	8	patterns	pattern	NNS
cord-320417-01l27d99	213	9	in	in	IN
cord-320417-01l27d99	213	10	virus	virus	NN
cord-320417-01l27d99	213	11	genomes	genome	NNS
cord-320417-01l27d99	213	12	PhiPack	PhiPack	NNP
cord-320417-01l27d99	213	13	:	:	:
cord-320417-01l27d99	213	14	PHI	phi	NN
cord-320417-01l27d99	213	15	test	test	NN
cord-320417-01l27d99	213	16	and	and	CC
cord-320417-01l27d99	213	17	other	other	JJ
cord-320417-01l27d99	213	18	tests	test	NNS
cord-320417-01l27d99	213	19	of	of	IN
cord-320417-01l27d99	213	20	recombination	recombination	NN
cord-320417-01l27d99	213	21	Real	real	JJ
cord-320417-01l27d99	213	22	-	-	HYPH
cord-320417-01l27d99	213	23	time	time	NN
cord-320417-01l27d99	213	24	,	,	,
cord-320417-01l27d99	213	25	portable	portable	JJ
cord-320417-01l27d99	213	26	genome	genome	NN
cord-320417-01l27d99	213	27	sequencing	sequencing	NN
cord-320417-01l27d99	213	28	for	for	IN
cord-320417-01l27d99	213	29	Ebola	Ebola	NNP
cord-320417-01l27d99	213	30	surveillance	surveillance	NN
cord-320417-01l27d99	213	31	Multiplex	Multiplex	NNP
cord-320417-01l27d99	213	32	PCR	PCR	NNP
cord-320417-01l27d99	213	33	method	method	NN
cord-320417-01l27d99	213	34	for	for	IN
cord-320417-01l27d99	213	35	MinION	MinION	NNP
cord-320417-01l27d99	213	36	and	and	CC
cord-320417-01l27d99	213	37	Illumina	Illumina	NNP
cord-320417-01l27d99	213	38	sequencing	sequencing	NN
cord-320417-01l27d99	213	39	of	of	IN
cord-320417-01l27d99	213	40	Zika	Zika	NNP
cord-320417-01l27d99	213	41	and	and	CC
cord-320417-01l27d99	213	42	other	other	JJ
cord-320417-01l27d99	213	43	virus	virus	NN
cord-320417-01l27d99	213	44	genomes	genome	NNS
cord-320417-01l27d99	213	45	directly	directly	RB
cord-320417-01l27d99	213	46	from	from	IN
cord-320417-01l27d99	213	47	clinical	clinical	JJ
cord-320417-01l27d99	213	48	samples	sample	NNS
cord-320417-01l27d99	213	49	Direct	Direct	NNP
cord-320417-01l27d99	213	50	RNA	RNA	NNP
cord-320417-01l27d99	213	51	sequencing	sequencing	NN
cord-320417-01l27d99	213	52	and	and	CC
cord-320417-01l27d99	213	53	early	early	JJ
cord-320417-01l27d99	213	54	evolution	evolution	NN
cord-320417-01l27d99	213	55	of	of	IN
cord-320417-01l27d99	213	56	SARS	SARS	NNP
cord-320417-01l27d99	213	57	-	-	HYPH
cord-320417-01l27d99	213	58	CoV-2	CoV-2	NNP
cord-320417-01l27d99	213	59	A	a	DT
cord-320417-01l27d99	213	60	Unique	Unique	NNP
cord-320417-01l27d99	213	61	Clade	Clade	NNP
cord-320417-01l27d99	213	62	of	of	IN
cord-320417-01l27d99	213	63	SARS	SARS	NNP
cord-320417-01l27d99	213	64	-	-	HYPH
cord-320417-01l27d99	213	65	CoV-2	CoV-2	NNP
cord-320417-01l27d99	213	66	Viruses	virus	NNS
cord-320417-01l27d99	214	1	is	be	VBZ
cord-320417-01l27d99	214	2	Associated	associate	VBN
cord-320417-01l27d99	214	3	with	with	IN
cord-320417-01l27d99	214	4	Lower	low	JJR
cord-320417-01l27d99	214	5	Viral	Viral	NNP
cord-320417-01l27d99	214	6	Loads	Loads	NNPS
cord-320417-01l27d99	214	7	in	in	IN
cord-320417-01l27d99	214	8	Patient	Patient	NNP
cord-320417-01l27d99	214	9	Upper	Upper	NNP
cord-320417-01l27d99	214	10	Airways	Airways	NNP
cord-320417-01l27d99	214	11	RAMPART	RAMPART	NNP
cord-320417-01l27d99	214	12	:	:	:
cord-320417-01l27d99	215	1	A	a	DT
cord-320417-01l27d99	215	2	workflow	workflow	NN
cord-320417-01l27d99	215	3	management	management	NN
cord-320417-01l27d99	215	4	system	system	NN
cord-320417-01l27d99	215	5	for	for	IN
cord-320417-01l27d99	215	6	de	de	NNP
cord-320417-01l27d99	215	7	novo	novo	NNP
cord-320417-01l27d99	215	8	genome	genome	NNP
cord-320417-01l27d99	215	9	assembly	assembly	NNP
cord-320417-01l27d99	215	10	Phylogenetic	Phylogenetic	NNP
cord-320417-01l27d99	215	11	network	network	NN
cord-320417-01l27d99	215	12	analysis	analysis	NN
cord-320417-01l27d99	215	13	of	of	IN
cord-320417-01l27d99	215	14	SARS	SARS	NNP
cord-320417-01l27d99	215	15	-	-	HYPH
cord-320417-01l27d99	215	16	CoV-2	CoV-2	NNP
cord-320417-01l27d99	215	17	genomes	genome	NNS
cord-320417-01l27d99	216	1	The	the	DT
cord-320417-01l27d99	216	2	emergence	emergence	NN
cord-320417-01l27d99	216	3	of	of	IN
cord-320417-01l27d99	216	4	SARS	SARS	NNP
cord-320417-01l27d99	216	5	-	-	HYPH
cord-320417-01l27d99	216	6	CoV-2	CoV-2	NNP
cord-320417-01l27d99	216	7	in	in	IN
cord-320417-01l27d99	216	8	Europe	Europe	NNP
cord-320417-01l27d99	216	9	and	and	CC
cord-320417-01l27d99	216	10	the	the	DT
cord-320417-01l27d99	216	11	US	US	NNP
cord-320417-01l27d99	217	1	How	how	WRB
cord-320417-01l27d99	217	2	does	do	VBZ
cord-320417-01l27d99	217	3	recombination	recombination	NN
cord-320417-01l27d99	217	4	affect	affect	VB
cord-320417-01l27d99	217	5	phylogeny	phylogeny	NN
cord-320417-01l27d99	217	6	estimation	estimation	NN
cord-320417-01l27d99	217	7	?	?	.
cord-320417-01l27d99	218	1	Consequences	consequence	NNS
cord-320417-01l27d99	218	2	of	of	IN
cord-320417-01l27d99	218	3	Recombination	recombination	NN
cord-320417-01l27d99	218	4	on	on	IN
cord-320417-01l27d99	218	5	Traditional	Traditional	NNP
cord-320417-01l27d99	218	6	Phylogenetic	Phylogenetic	NNP
cord-320417-01l27d99	218	7	Analysis	Analysis	NNP
cord-320417-01l27d99	218	8	Recombination	Recombination	NNP
cord-320417-01l27d99	218	9	and	and	CC
cord-320417-01l27d99	218	10	phylogeny	phylogeny	NN
cord-320417-01l27d99	218	11	:	:	:
cord-320417-01l27d99	218	12	effects	effect	NNS
cord-320417-01l27d99	218	13	and	and	CC
cord-320417-01l27d99	218	14	detection	detection	NN
cord-320417-01l27d99	218	15	Chapter	chapter	NN
cord-320417-01l27d99	218	16	43	43	CD
cord-320417-01l27d99	218	17	Viral	Viral	NNP
cord-320417-01l27d99	218	18	Genetics	Genetics	NNPS
cord-320417-01l27d99	218	19	Quasispecies	Quasispecies	NNP
cord-320417-01l27d99	218	20	theory	theory	NN
cord-320417-01l27d99	218	21	and	and	CC
cord-320417-01l27d99	218	22	the	the	DT
cord-320417-01l27d99	218	23	behavior	behavior	NN
cord-320417-01l27d99	218	24	of	of	IN
cord-320417-01l27d99	218	25	RNA	RNA	NNP
cord-320417-01l27d99	218	26	viruses	virus	NNS
cord-320417-01l27d99	218	27	Genetic	genetic	JJ
cord-320417-01l27d99	218	28	Diversity	Diversity	NNP
cord-320417-01l27d99	218	29	in	in	IN
cord-320417-01l27d99	218	30	RNA	RNA	NNP
cord-320417-01l27d99	218	31	Virus	Virus	NNP
cord-320417-01l27d99	218	32	Quasispecies	Quasispecies	NNP
cord-320417-01l27d99	218	33	Is	be	VBZ
cord-320417-01l27d99	218	34	Controlled	control	VBN
cord-320417-01l27d99	218	35	by	by	IN
cord-320417-01l27d99	218	36	Host	Host	NNP
cord-320417-01l27d99	218	37	-	-	HYPH
cord-320417-01l27d99	218	38	Virus	Virus	NNP
cord-320417-01l27d99	218	39	Interactions	Interactions	NNPS
cord-320417-01l27d99	218	40	Genetic	Genetic	NNP
cord-320417-01l27d99	218	41	Diversity	Diversity	NNP
cord-320417-01l27d99	218	42	in	in	IN
cord-320417-01l27d99	218	43	RNA	RNA	NNP
cord-320417-01l27d99	218	44	Virus	Virus	NNP
cord-320417-01l27d99	218	45	Quasispecies	Quasispecies	NNP
cord-320417-01l27d99	218	46	Is	be	VBZ
cord-320417-01l27d99	218	47	Controlled	control	VBN
cord-320417-01l27d99	218	48	by	by	IN
cord-320417-01l27d99	218	49	Host	Host	NNP
cord-320417-01l27d99	218	50	-	-	HYPH
cord-320417-01l27d99	218	51	Virus	Virus	NNP
cord-320417-01l27d99	218	52	Interactions	Interactions	NNPS
cord-320417-01l27d99	218	53	Bayesian	Bayesian	NNP
cord-320417-01l27d99	218	54	phylogenetic	phylogenetic	NN
cord-320417-01l27d99	218	55	and	and	CC
cord-320417-01l27d99	218	56	phylodynamic	phylodynamic	JJ
cord-320417-01l27d99	218	57	data	datum	NNS
cord-320417-01l27d99	218	58	integration	integration	NN
cord-320417-01l27d99	218	59	using	use	VBG
cord-320417-01l27d99	218	60	BEAST	BEAST	NNP
cord-320417-01l27d99	218	61	1.10	1.10	CD
cord-320417-01l27d99	218	62	.	.	.
cord-320417-01l27d99	219	1	Virus	Virus	NNP
cord-320417-01l27d99	219	2	Evol	Evol	NNP
cord-320417-01l27d99	219	3	BEAGLE	BEAGLE	NNP
cord-320417-01l27d99	219	4	:	:	:
cord-320417-01l27d99	220	1	An	an	DT
cord-320417-01l27d99	220	2	application	application	NN
cord-320417-01l27d99	220	3	programming	programming	NN
cord-320417-01l27d99	220	4	interface	interface	NN
cord-320417-01l27d99	220	5	and	and	CC
cord-320417-01l27d99	220	6	highperformance	highperformance	JJ
cord-320417-01l27d99	220	7	computing	computing	NN
cord-320417-01l27d99	220	8	library	library	NN
cord-320417-01l27d99	220	9	for	for	IN
cord-320417-01l27d99	220	10	statistical	statistical	JJ
cord-320417-01l27d99	220	11	phylogenetics	phylogenetic	NNS
cord-320417-01l27d99	221	1	The	the	DT
cord-320417-01l27d99	221	2	EMBL	EMBL	NNP
cord-320417-01l27d99	221	3	-	-	HYPH
cord-320417-01l27d99	221	4	EBI	ebi	NN
cord-320417-01l27d99	221	5	search	search	NN
cord-320417-01l27d99	221	6	and	and	CC
cord-320417-01l27d99	221	7	sequence	sequence	NN
cord-320417-01l27d99	221	8	analysis	analysis	NN
cord-320417-01l27d99	221	9	tools	tool	NNS
cord-320417-01l27d99	221	10	APIs	api	NNS
cord-320417-01l27d99	221	11	in	in	IN
cord-320417-01l27d99	221	12	2019	2019	CD
cord-320417-01l27d99	221	13	SNP	SNP	NNP
cord-320417-01l27d99	221	14	-	-	HYPH
cord-320417-01l27d99	221	15	sites	site	NNS
cord-320417-01l27d99	221	16	:	:	:
cord-320417-01l27d99	221	17	rapid	rapid	JJ
cord-320417-01l27d99	221	18	efficient	efficient	JJ
cord-320417-01l27d99	221	19	extraction	extraction	NN
cord-320417-01l27d99	221	20	of	of	IN
cord-320417-01l27d99	221	21	SNPs	SNPs	NNPS
cord-320417-01l27d99	221	22	from	from	IN
cord-320417-01l27d99	221	23	multi	multi	JJ
cord-320417-01l27d99	221	24	-	-	JJ
cord-320417-01l27d99	221	25	FASTA	fasta	JJ
cord-320417-01l27d99	221	26	alignments	alignment	NNS
cord-320417-01l27d99	222	1	ACKNOWLEDGEMENTS	ACKNOWLEDGEMENTS	NNP
cord-320417-01l27d99	223	1	I	-PRON-	PRP
cord-320417-01l27d99	223	2	thank	thank	VBP
cord-320417-01l27d99	223	3	Dr.	Dr.	NNP
cord-320417-01l27d99	223	4	Matthew	Matthew	NNP
cord-320417-01l27d99	223	5	J.	J.	NNP
cord-320417-01l27d99	223	6	Binnicker	Binnicker	NNP
cord-320417-01l27d99	223	7	,	,	,
cord-320417-01l27d99	223	8	whose	whose	WP$
cord-320417-01l27d99	223	9	lab	lab	NN
cord-320417-01l27d99	223	10	provided	provide	VBD
cord-320417-01l27d99	223	11	RNA	RNA	NNP
cord-320417-01l27d99	223	12	extracts	extract	NNS
cord-320417-01l27d99	223	13	of	of	IN
cord-320417-01l27d99	223	14	COVID-19	covid-19	JJ
cord-320417-01l27d99	223	15	samples	sample	NNS
cord-320417-01l27d99	223	16	.	.	.
cord-320417-01l27d99	224	1	I	-PRON-	PRP
cord-320417-01l27d99	224	2	also	also	RB
cord-320417-01l27d99	224	3	thank	thank	VBP
cord-320417-01l27d99	224	4	Drs	Drs	NNP
cord-320417-01l27d99	224	5	.	.	.
cord-320417-01l27d99	225	1	Gregory	Gregory	NNP
cord-320417-01l27d99	225	2	A.	A.	NNP
cord-320417-01l27d99	225	3	Worrell	Worrell	NNP
cord-320417-01l27d99	225	4	and	and	CC
cord-320417-01l27d99	225	5	Thomas	Thomas	NNP
cord-320417-01l27d99	225	6	P.	P.	NNP
cord-320417-01l27d99	225	7	Burghardt	Burghardt	NNP
cord-320417-01l27d99	225	8	for	for	IN
cord-320417-01l27d99	225	9	their	-PRON-	PRP$
cord-320417-01l27d99	225	10	valuable	valuable	JJ
cord-320417-01l27d99	225	11	comments	comment	NNS
cord-320417-01l27d99	225	12	.	.	.
cord-320417-01l27d99	226	1	I	-PRON-	PRP
cord-320417-01l27d99	226	2	especially	especially	RB
cord-320417-01l27d99	226	3	thank	thank	VBP
cord-320417-01l27d99	226	4	my	-PRON-	PRP$
cord-320417-01l27d99	226	5	son	son	NN
cord-320417-01l27d99	226	6	Michael	Michael	NNP
cord-320417-01l27d99	226	7	and	and	CC
cord-320417-01l27d99	226	8	my	-PRON-	PRP$
cord-320417-01l27d99	226	9	daughter	daughter	NN
cord-320417-01l27d99	226	10	Michelle	Michelle	NNP
cord-320417-01l27d99	226	11	who	who	WP
cord-320417-01l27d99	226	12	provided	provide	VBD
cord-320417-01l27d99	226	13	conceptual	conceptual	JJ
cord-320417-01l27d99	226	14	inputs	input	NNS
cord-320417-01l27d99	226	15	to	to	IN
cord-320417-01l27d99	226	16	this	this	DT
cord-320417-01l27d99	226	17	work	work	NN
cord-320417-01l27d99	226	18	and	and	CC
cord-320417-01l27d99	226	19	proofreading	proofread	VBG
cord-320417-01l27d99	226	20	on	on	IN
cord-320417-01l27d99	226	21	the	the	DT
cord-320417-01l27d99	226	22	initial	initial	JJ
cord-320417-01l27d99	226	23	draft	draft	NN
cord-320417-01l27d99	226	24	of	of	IN
cord-320417-01l27d99	226	25	this	this	DT
cord-320417-01l27d99	226	26	manuscript	manuscript	NN
cord-320417-01l27d99	226	27	.	.	.
cord-320417-01l27d99	227	1	No	no	DT
cord-320417-01l27d99	227	2	special	special	JJ
cord-320417-01l27d99	227	3	funding	funding	NN
cord-320417-01l27d99	227	4	was	be	VBD
cord-320417-01l27d99	227	5	received	receive	VBN
cord-320417-01l27d99	227	6	for	for	IN
cord-320417-01l27d99	227	7	this	this	DT
cord-320417-01l27d99	227	8	work	work	NN
cord-320417-01l27d99	227	9	,	,	,
cord-320417-01l27d99	227	10	although	although	IN
cord-320417-01l27d99	227	11	the	the	DT
cord-320417-01l27d99	227	12	author	author	NN
cord-320417-01l27d99	227	13	is	be	VBZ
cord-320417-01l27d99	227	14	supported	support	VBN
cord-320417-01l27d99	227	15	by	by	IN
cord-320417-01l27d99	227	16	NIH	NIH	NNP
cord-320417-01l27d99	227	17	BRAIN	BRAIN	NNP
cord-320417-01l27d99	227	18	initiative	initiative	NN
cord-320417-01l27d99	227	19	R01	R01	NNP
cord-320417-01l27d99	227	20	grant	grant	NN
cord-320417-01l27d99	228	1	(	(	-LRB-
cord-320417-01l27d99	228	2	NS112144	ns112144	NN
cord-320417-01l27d99	228	3	from	from	IN
cord-320417-01l27d99	228	4	NINDS	NINDS	NNP
cord-320417-01l27d99	228	5	and	and	CC
cord-320417-01l27d99	228	6	NIMH	NIMH	NNP
cord-320417-01l27d99	228	7	)	)	-RRB-
cord-320417-01l27d99	228	8	and	and	CC
cord-320417-01l27d99	228	9	the	the	DT
cord-320417-01l27d99	228	10	Minnesota	Minnesota	NNP
cord-320417-01l27d99	228	11	Partnership	Partnership	NNP
cord-320417-01l27d99	228	12	for	for	IN
cord-320417-01l27d99	228	13	Biotechnology	Biotechnology	NNP
cord-320417-01l27d99	228	14	and	and	CC
cord-320417-01l27d99	228	15	Medical	Medical	NNP
cord-320417-01l27d99	228	16	Genomics	Genomics	NNP
cord-320417-01l27d99	228	17	(	(	-LRB-
cord-320417-01l27d99	228	18	MNP	MNP	NNP
cord-320417-01l27d99	228	19	#	#	NN
cord-320417-01l27d99	228	20	17.16	17.16	CD
cord-320417-01l27d99	228	21	)	)	-RRB-
cord-320417-01l27d99	228	22	.	.	.
cord-320417-01l27d99	229	1	These	these	DT
cord-320417-01l27d99	229	2	funding	funding	NN
cord-320417-01l27d99	229	3	sources	source	NNS
cord-320417-01l27d99	229	4	had	have	VBD
cord-320417-01l27d99	229	5	no	no	DT
cord-320417-01l27d99	229	6	role	role	NN
cord-320417-01l27d99	229	7	in	in	IN
cord-320417-01l27d99	229	8	the	the	DT
cord-320417-01l27d99	229	9	design	design	NN
cord-320417-01l27d99	229	10	of	of	IN
cord-320417-01l27d99	229	11	the	the	DT
cord-320417-01l27d99	229	12	study	study	NN
cord-320417-01l27d99	229	13	,	,	,
cord-320417-01l27d99	229	14	in	in	IN
cord-320417-01l27d99	229	15	the	the	DT
cord-320417-01l27d99	229	16	collection	collection	NN
cord-320417-01l27d99	229	17	/	/	SYM
cord-320417-01l27d99	229	18	analysis	analysis	NN
cord-320417-01l27d99	229	19	/	/	SYM
cord-320417-01l27d99	229	20	interpretation	interpretation	NN
cord-320417-01l27d99	229	21	of	of	IN
cord-320417-01l27d99	229	22	the	the	DT
cord-320417-01l27d99	229	23	data	datum	NNS
cord-320417-01l27d99	229	24	,	,	,
cord-320417-01l27d99	229	25	in	in	IN
cord-320417-01l27d99	229	26	the	the	DT
cord-320417-01l27d99	229	27	writing	writing	NN
cord-320417-01l27d99	229	28	of	of	IN
cord-320417-01l27d99	229	29	the	the	DT
cord-320417-01l27d99	229	30	report	report	NN
cord-320417-01l27d99	229	31	,	,	,
cord-320417-01l27d99	229	32	or	or	CC
cord-320417-01l27d99	229	33	in	in	IN
cord-320417-01l27d99	229	34	the	the	DT
cord-320417-01l27d99	229	35	decision	decision	NN
cord-320417-01l27d99	229	36	to	to	TO
cord-320417-01l27d99	229	37	publish	publish	VB
cord-320417-01l27d99	229	38	.	.	.
cord-320417-01l27d99	230	1	The	the	DT
cord-320417-01l27d99	230	2	corresponding	correspond	VBG
cord-320417-01l27d99	230	3	author	author	NN
cord-320417-01l27d99	230	4	had	have	VBD
cord-320417-01l27d99	230	5	access	access	NN
cord-320417-01l27d99	230	6	to	to	IN
cord-320417-01l27d99	230	7	all	all	DT
cord-320417-01l27d99	230	8	of	of	IN
cord-320417-01l27d99	230	9	the	the	DT
cord-320417-01l27d99	230	10	data	datum	NNS
cord-320417-01l27d99	230	11	in	in	IN
cord-320417-01l27d99	230	12	the	the	DT
cord-320417-01l27d99	230	13	study	study	NN
cord-320417-01l27d99	230	14	and	and	CC
cord-320417-01l27d99	230	15	had	have	VBD
cord-320417-01l27d99	230	16	final	final	JJ
cord-320417-01l27d99	230	17	responsibility	responsibility	NN
cord-320417-01l27d99	230	18	for	for	IN
cord-320417-01l27d99	230	19	the	the	DT
cord-320417-01l27d99	230	20	decision	decision	NN
cord-320417-01l27d99	230	21	to	to	TO
cord-320417-01l27d99	230	22	submit	submit	VB
cord-320417-01l27d99	230	23	this	this	DT
cord-320417-01l27d99	230	24	work	work	NN
cord-320417-01l27d99	230	25	.	.	.