id	sid	tid	token	lemma	pos
10_1101-2021_01_07_425794	1	1	Impact	impact	NN
10_1101-2021_01_07_425794	1	2	of	of	IN
10_1101-2021_01_07_425794	1	3	gene	gene	NN
10_1101-2021_01_07_425794	1	4	annotation	annotation	NN
10_1101-2021_01_07_425794	1	5	choice	choice	NN
10_1101-2021_01_07_425794	1	6	on	on	IN
10_1101-2021_01_07_425794	1	7	the	the	DT
10_1101-2021_01_07_425794	1	8	quantification	quantification	NN
10_1101-2021_01_07_425794	1	9	of	of	IN
10_1101-2021_01_07_425794	1	10	RNA	RNA	NNP
10_1101-2021_01_07_425794	1	11	-	-	HYPH
10_1101-2021_01_07_425794	1	12	seq	seq	NN
10_1101-2021_01_07_425794	1	13	data	datum	NNS
10_1101-2021_01_07_425794	1	14	Impact	impact	NN
10_1101-2021_01_07_425794	1	15	of	of	IN
10_1101-2021_01_07_425794	1	16	gene	gene	NN
10_1101-2021_01_07_425794	1	17	annotation	annotation	NN
10_1101-2021_01_07_425794	1	18	choice	choice	NN
10_1101-2021_01_07_425794	1	19	on	on	IN
10_1101-2021_01_07_425794	1	20	the	the	DT
10_1101-2021_01_07_425794	1	21	quantification	quantification	NN
10_1101-2021_01_07_425794	1	22	of	of	IN
10_1101-2021_01_07_425794	1	23	RNA	RNA	NNP
10_1101-2021_01_07_425794	1	24	-	-	HYPH
10_1101-2021_01_07_425794	1	25	seq	seq	NN
10_1101-2021_01_07_425794	1	26	data	datum	NNS
10_1101-2021_01_07_425794	1	27	David	David	NNP
10_1101-2021_01_07_425794	1	28	Chisanga	Chisanga	NNP
10_1101-2021_01_07_425794	1	29	1,2,3,4	1,2,3,4	NN
10_1101-2021_01_07_425794	1	30	,	,	,
10_1101-2021_01_07_425794	1	31	Yang	Yang	NNP
10_1101-2021_01_07_425794	1	32	Liao	Liao	NNP
10_1101-2021_01_07_425794	1	33	1,2,3,4	1,2,3,4	NN
10_1101-2021_01_07_425794	1	34	and	and	CC
10_1101-2021_01_07_425794	1	35	Wei	Wei	NNP
10_1101-2021_01_07_425794	1	36	Shi	Shi	NNP
10_1101-2021_01_07_425794	1	37	1,2,3,5	1,2,3,5	NN
10_1101-2021_01_07_425794	1	38	*	*	NFP
10_1101-2021_01_07_425794	1	39	1Olivia	1Olivia	NNP
10_1101-2021_01_07_425794	1	40	Newton	Newton	NNP
10_1101-2021_01_07_425794	1	41	-	-	HYPH
10_1101-2021_01_07_425794	1	42	John	John	NNP
10_1101-2021_01_07_425794	1	43	Cancer	Cancer	NNP
10_1101-2021_01_07_425794	1	44	Research	Research	NNP
10_1101-2021_01_07_425794	1	45	Institute	Institute	NNP
10_1101-2021_01_07_425794	1	46	,	,	,
10_1101-2021_01_07_425794	1	47	Heidelberg	Heidelberg	NNP
10_1101-2021_01_07_425794	1	48	,	,	,
10_1101-2021_01_07_425794	1	49	Victoria	Victoria	NNP
10_1101-2021_01_07_425794	1	50	,	,	,
10_1101-2021_01_07_425794	1	51	3084	3084	CD
10_1101-2021_01_07_425794	1	52	,	,	,
10_1101-2021_01_07_425794	1	53	Australia	Australia	NNP
10_1101-2021_01_07_425794	1	54	,	,	,
10_1101-2021_01_07_425794	1	55	2School	2School	NNS
10_1101-2021_01_07_425794	1	56	of	of	IN
10_1101-2021_01_07_425794	1	57	Cancer	Cancer	NNP
10_1101-2021_01_07_425794	1	58	Medicine	Medicine	NNP
10_1101-2021_01_07_425794	1	59	,	,	,
10_1101-2021_01_07_425794	1	60	La	La	NNP
10_1101-2021_01_07_425794	1	61	Trobe	Trobe	NNP
10_1101-2021_01_07_425794	1	62	University	University	NNP
10_1101-2021_01_07_425794	1	63	,	,	,
10_1101-2021_01_07_425794	1	64	Bundoora	Bundoora	NNP
10_1101-2021_01_07_425794	1	65	,	,	,
10_1101-2021_01_07_425794	1	66	Victoria	Victoria	NNP
10_1101-2021_01_07_425794	1	67	,	,	,
10_1101-2021_01_07_425794	1	68	3083	3083	CD
10_1101-2021_01_07_425794	1	69	,	,	,
10_1101-2021_01_07_425794	1	70	Australia	Australia	NNP
10_1101-2021_01_07_425794	1	71	,	,	,
10_1101-2021_01_07_425794	1	72	3Walter	3Walter	NNP
10_1101-2021_01_07_425794	1	73	and	and	CC
10_1101-2021_01_07_425794	1	74	Eliza	Eliza	NNP
10_1101-2021_01_07_425794	1	75	Hall	Hall	NNP
10_1101-2021_01_07_425794	1	76	Institute	Institute	NNP
10_1101-2021_01_07_425794	1	77	of	of	IN
10_1101-2021_01_07_425794	1	78	Medical	Medical	NNP
10_1101-2021_01_07_425794	1	79	Research	Research	NNP
10_1101-2021_01_07_425794	1	80	,	,	,
10_1101-2021_01_07_425794	1	81	Parkville	Parkville	NNP
10_1101-2021_01_07_425794	1	82	,	,	,
10_1101-2021_01_07_425794	1	83	Victoria	Victoria	NNP
10_1101-2021_01_07_425794	1	84	,	,	,
10_1101-2021_01_07_425794	1	85	3052	3052	CD
10_1101-2021_01_07_425794	1	86	,	,	,
10_1101-2021_01_07_425794	1	87	Australia	Australia	NNP
10_1101-2021_01_07_425794	1	88	,	,	,
10_1101-2021_01_07_425794	1	89	4Department	4department	NN
10_1101-2021_01_07_425794	1	90	of	of	IN
10_1101-2021_01_07_425794	1	91	Medical	Medical	NNP
10_1101-2021_01_07_425794	1	92	Biology	Biology	NNP
10_1101-2021_01_07_425794	1	93	,	,	,
10_1101-2021_01_07_425794	1	94	The	the	DT
10_1101-2021_01_07_425794	1	95	University	University	NNP
10_1101-2021_01_07_425794	1	96	of	of	IN
10_1101-2021_01_07_425794	1	97	Melbourne	Melbourne	NNP
10_1101-2021_01_07_425794	1	98	,	,	,
10_1101-2021_01_07_425794	1	99	Parkville	Parkville	NNP
10_1101-2021_01_07_425794	1	100	,	,	,
10_1101-2021_01_07_425794	1	101	Victoria	Victoria	NNP
10_1101-2021_01_07_425794	1	102	,	,	,
10_1101-2021_01_07_425794	1	103	3010	3010	CD
10_1101-2021_01_07_425794	1	104	,	,	,
10_1101-2021_01_07_425794	1	105	Australia	Australia	NNP
10_1101-2021_01_07_425794	1	106	and	and	CC
10_1101-2021_01_07_425794	1	107	5School	5School	NNP
10_1101-2021_01_07_425794	1	108	of	of	IN
10_1101-2021_01_07_425794	1	109	Computing	Computing	NNP
10_1101-2021_01_07_425794	1	110	and	and	CC
10_1101-2021_01_07_425794	1	111	Information	Information	NNP
10_1101-2021_01_07_425794	1	112	Systems	Systems	NNPS
10_1101-2021_01_07_425794	1	113	,	,	,
10_1101-2021_01_07_425794	1	114	The	the	DT
10_1101-2021_01_07_425794	1	115	University	University	NNP
10_1101-2021_01_07_425794	1	116	of	of	IN
10_1101-2021_01_07_425794	1	117	Mel-	Mel-	NNP
10_1101-2021_01_07_425794	1	118	bourne	bourne	NNP
10_1101-2021_01_07_425794	1	119	,	,	,
10_1101-2021_01_07_425794	1	120	Parkville	Parkville	NNP
10_1101-2021_01_07_425794	1	121	,	,	,
10_1101-2021_01_07_425794	1	122	Victoria	Victoria	NNP
10_1101-2021_01_07_425794	1	123	,	,	,
10_1101-2021_01_07_425794	1	124	3010	3010	CD
10_1101-2021_01_07_425794	1	125	,	,	,
10_1101-2021_01_07_425794	1	126	Australia	Australia	NNP
10_1101-2021_01_07_425794	1	127	Abstract	Abstract	NNP
10_1101-2021_01_07_425794	1	128	RNA	RNA	NNP
10_1101-2021_01_07_425794	1	129	sequencing	sequencing	NN
10_1101-2021_01_07_425794	1	130	is	be	VBZ
10_1101-2021_01_07_425794	1	131	currently	currently	RB
10_1101-2021_01_07_425794	1	132	the	the	DT
10_1101-2021_01_07_425794	1	133	method	method	NN
10_1101-2021_01_07_425794	1	134	of	of	IN
10_1101-2021_01_07_425794	1	135	choice	choice	NN
10_1101-2021_01_07_425794	1	136	for	for	IN
10_1101-2021_01_07_425794	1	137	genome	genome	NN
10_1101-2021_01_07_425794	1	138	-	-	HYPH
10_1101-2021_01_07_425794	1	139	wide	wide	JJ
10_1101-2021_01_07_425794	1	140	profiling	profiling	NN
10_1101-2021_01_07_425794	1	141	of	of	IN
10_1101-2021_01_07_425794	1	142	gene	gene	NN
10_1101-2021_01_07_425794	1	143	expression	expression	NN
10_1101-2021_01_07_425794	1	144	.	.	.
10_1101-2021_01_07_425794	2	1	A	a	DT
10_1101-2021_01_07_425794	2	2	popular	popular	JJ
10_1101-2021_01_07_425794	2	3	approach	approach	NN
10_1101-2021_01_07_425794	2	4	to	to	TO
10_1101-2021_01_07_425794	2	5	quantify	quantify	VB
10_1101-2021_01_07_425794	2	6	expression	expression	NN
10_1101-2021_01_07_425794	2	7	levels	level	NNS
10_1101-2021_01_07_425794	2	8	of	of	IN
10_1101-2021_01_07_425794	2	9	genes	gene	NNS
10_1101-2021_01_07_425794	2	10	from	from	IN
10_1101-2021_01_07_425794	2	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	2	12	-	-	HYPH
10_1101-2021_01_07_425794	2	13	seq	seq	NN
10_1101-2021_01_07_425794	2	14	data	datum	NNS
10_1101-2021_01_07_425794	2	15	is	be	VBZ
10_1101-2021_01_07_425794	2	16	to	to	TO
10_1101-2021_01_07_425794	2	17	map	map	VB
10_1101-2021_01_07_425794	2	18	reads	read	VBZ
10_1101-2021_01_07_425794	2	19	to	to	IN
10_1101-2021_01_07_425794	2	20	a	a	DT
10_1101-2021_01_07_425794	2	21	reference	reference	NN
10_1101-2021_01_07_425794	2	22	genome	genome	JJ
10_1101-2021_01_07_425794	2	23	and	and	CC
10_1101-2021_01_07_425794	2	24	then	then	RB
10_1101-2021_01_07_425794	2	25	count	count	VB
10_1101-2021_01_07_425794	2	26	mapped	map	VBD
10_1101-2021_01_07_425794	2	27	reads	read	VBZ
10_1101-2021_01_07_425794	2	28	to	to	IN
10_1101-2021_01_07_425794	2	29	each	each	DT
10_1101-2021_01_07_425794	2	30	gene	gene	NN
10_1101-2021_01_07_425794	2	31	.	.	.
10_1101-2021_01_07_425794	3	1	Gene	gene	NN
10_1101-2021_01_07_425794	3	2	annotation	annotation	NN
10_1101-2021_01_07_425794	3	3	data	datum	NNS
10_1101-2021_01_07_425794	3	4	,	,	,
10_1101-2021_01_07_425794	3	5	which	which	WDT
10_1101-2021_01_07_425794	3	6	include	include	VBP
10_1101-2021_01_07_425794	3	7	chromosomal	chromosomal	JJ
10_1101-2021_01_07_425794	3	8	coordinates	coordinate	NNS
10_1101-2021_01_07_425794	3	9	of	of	IN
10_1101-2021_01_07_425794	3	10	exons	exon	NNS
10_1101-2021_01_07_425794	3	11	for	for	IN
10_1101-2021_01_07_425794	3	12	tens	ten	NNS
10_1101-2021_01_07_425794	3	13	of	of	IN
10_1101-2021_01_07_425794	3	14	thousands	thousand	NNS
10_1101-2021_01_07_425794	3	15	of	of	IN
10_1101-2021_01_07_425794	3	16	genes	gene	NNS
10_1101-2021_01_07_425794	3	17	,	,	,
10_1101-2021_01_07_425794	3	18	are	be	VBP
10_1101-2021_01_07_425794	3	19	required	require	VBN
10_1101-2021_01_07_425794	3	20	for	for	IN
10_1101-2021_01_07_425794	3	21	this	this	DT
10_1101-2021_01_07_425794	3	22	quantification	quantification	NN
10_1101-2021_01_07_425794	3	23	process	process	NN
10_1101-2021_01_07_425794	3	24	.	.	.
10_1101-2021_01_07_425794	4	1	There	there	EX
10_1101-2021_01_07_425794	4	2	are	be	VBP
10_1101-2021_01_07_425794	4	3	several	several	JJ
10_1101-2021_01_07_425794	4	4	major	major	JJ
10_1101-2021_01_07_425794	4	5	sources	source	NNS
10_1101-2021_01_07_425794	4	6	of	of	IN
10_1101-2021_01_07_425794	4	7	gene	gene	NN
10_1101-2021_01_07_425794	4	8	annotations	annotation	NNS
10_1101-2021_01_07_425794	4	9	that	that	WDT
10_1101-2021_01_07_425794	4	10	can	can	MD
10_1101-2021_01_07_425794	4	11	be	be	VB
10_1101-2021_01_07_425794	4	12	used	use	VBN
10_1101-2021_01_07_425794	4	13	for	for	IN
10_1101-2021_01_07_425794	4	14	quantification	quantification	NN
10_1101-2021_01_07_425794	4	15	,	,	,
10_1101-2021_01_07_425794	4	16	such	such	JJ
10_1101-2021_01_07_425794	4	17	as	as	IN
10_1101-2021_01_07_425794	4	18	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	4	19	and	and	CC
10_1101-2021_01_07_425794	4	20	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	4	21	databases	database	NNS
10_1101-2021_01_07_425794	4	22	.	.	.
10_1101-2021_01_07_425794	5	1	However	however	RB
10_1101-2021_01_07_425794	5	2	,	,	,
10_1101-2021_01_07_425794	5	3	there	there	EX
10_1101-2021_01_07_425794	5	4	is	be	VBZ
10_1101-2021_01_07_425794	5	5	very	very	RB
10_1101-2021_01_07_425794	5	6	little	little	JJ
10_1101-2021_01_07_425794	5	7	understanding	understanding	NN
10_1101-2021_01_07_425794	5	8	of	of	IN
10_1101-2021_01_07_425794	5	9	the	the	DT
10_1101-2021_01_07_425794	5	10	effect	effect	NN
10_1101-2021_01_07_425794	5	11	that	that	WDT
10_1101-2021_01_07_425794	5	12	the	the	DT
10_1101-2021_01_07_425794	5	13	choice	choice	NN
10_1101-2021_01_07_425794	5	14	of	of	IN
10_1101-2021_01_07_425794	5	15	annotation	annotation	NN
10_1101-2021_01_07_425794	5	16	has	have	VBZ
10_1101-2021_01_07_425794	5	17	on	on	IN
10_1101-2021_01_07_425794	5	18	the	the	DT
10_1101-2021_01_07_425794	5	19	accuracy	accuracy	NN
10_1101-2021_01_07_425794	5	20	of	of	IN
10_1101-2021_01_07_425794	5	21	gene	gene	NN
10_1101-2021_01_07_425794	5	22	expression	expression	NN
10_1101-2021_01_07_425794	5	23	quantification	quantification	NN
10_1101-2021_01_07_425794	5	24	in	in	IN
10_1101-2021_01_07_425794	5	25	an	an	DT
10_1101-2021_01_07_425794	5	26	RNA	RNA	NNP
10_1101-2021_01_07_425794	5	27	-	-	HYPH
10_1101-2021_01_07_425794	5	28	seq	seq	NN
10_1101-2021_01_07_425794	5	29	analysis	analysis	NN
10_1101-2021_01_07_425794	5	30	.	.	.
10_1101-2021_01_07_425794	6	1	In	in	IN
10_1101-2021_01_07_425794	6	2	this	this	DT
10_1101-2021_01_07_425794	6	3	paper	paper	NN
10_1101-2021_01_07_425794	6	4	,	,	,
10_1101-2021_01_07_425794	6	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	6	6	present	present	VBP
10_1101-2021_01_07_425794	6	7	results	result	NNS
10_1101-2021_01_07_425794	6	8	from	from	IN
10_1101-2021_01_07_425794	6	9	our	-PRON-	PRP$
10_1101-2021_01_07_425794	6	10	comparison	comparison	NN
10_1101-2021_01_07_425794	6	11	of	of	IN
10_1101-2021_01_07_425794	6	12	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	6	13	and	and	CC
10_1101-2021_01_07_425794	6	14	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	6	15	human	human	JJ
10_1101-2021_01_07_425794	6	16	annotations	annotation	NNS
10_1101-2021_01_07_425794	6	17	on	on	IN
10_1101-2021_01_07_425794	6	18	their	-PRON-	PRP$
10_1101-2021_01_07_425794	6	19	impact	impact	NN
10_1101-2021_01_07_425794	6	20	on	on	IN
10_1101-2021_01_07_425794	6	21	gene	gene	NN
10_1101-2021_01_07_425794	6	22	expression	expression	NN
10_1101-2021_01_07_425794	6	23	quantification	quantification	NN
10_1101-2021_01_07_425794	6	24	using	use	VBG
10_1101-2021_01_07_425794	6	25	a	a	DT
10_1101-2021_01_07_425794	6	26	benchmark	benchmark	JJ
10_1101-2021_01_07_425794	6	27	RNA	RNA	NNP
10_1101-2021_01_07_425794	6	28	-	-	HYPH
10_1101-2021_01_07_425794	6	29	seq	seq	NN
10_1101-2021_01_07_425794	6	30	dataset	dataset	NN
10_1101-2021_01_07_425794	6	31	generated	generate	VBN
10_1101-2021_01_07_425794	6	32	by	by	IN
10_1101-2021_01_07_425794	6	33	the	the	DT
10_1101-2021_01_07_425794	6	34	SEquencing	SEquencing	NNP
10_1101-2021_01_07_425794	6	35	Quality	Quality	NNP
10_1101-2021_01_07_425794	6	36	Control	Control	NNP
10_1101-2021_01_07_425794	6	37	(	(	-LRB-
10_1101-2021_01_07_425794	6	38	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	6	39	)	)	-RRB-
10_1101-2021_01_07_425794	6	40	consortium	consortium	NN
10_1101-2021_01_07_425794	6	41	.	.	.
10_1101-2021_01_07_425794	7	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	7	2	show	show	VBP
10_1101-2021_01_07_425794	7	3	that	that	IN
10_1101-2021_01_07_425794	7	4	the	the	DT
10_1101-2021_01_07_425794	7	5	use	use	NN
10_1101-2021_01_07_425794	7	6	of	of	IN
10_1101-2021_01_07_425794	7	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	7	8	gene	gene	NN
10_1101-2021_01_07_425794	7	9	annotation	annotation	NN
10_1101-2021_01_07_425794	7	10	models	model	NNS
10_1101-2021_01_07_425794	7	11	led	lead	VBN
10_1101-2021_01_07_425794	7	12	to	to	IN
10_1101-2021_01_07_425794	7	13	better	well	JJR
10_1101-2021_01_07_425794	7	14	quantification	quantification	NN
10_1101-2021_01_07_425794	7	15	accuracy	accuracy	NN
10_1101-2021_01_07_425794	7	16	,	,	,
10_1101-2021_01_07_425794	7	17	based	base	VBN
10_1101-2021_01_07_425794	7	18	on	on	IN
10_1101-2021_01_07_425794	7	19	the	the	DT
10_1101-2021_01_07_425794	7	20	correlation	correlation	NN
10_1101-2021_01_07_425794	7	21	with	with	IN
10_1101-2021_01_07_425794	7	22	ground	ground	NN
10_1101-2021_01_07_425794	7	23	truths	truth	NNS
10_1101-2021_01_07_425794	7	24	including	include	VBG
10_1101-2021_01_07_425794	7	25	expression	expression	NN
10_1101-2021_01_07_425794	7	26	data	datum	NNS
10_1101-2021_01_07_425794	7	27	from	from	IN
10_1101-2021_01_07_425794	7	28	>	>	XX
10_1101-2021_01_07_425794	7	29	800	800	CD
10_1101-2021_01_07_425794	7	30	real	real	JJ
10_1101-2021_01_07_425794	7	31	-	-	HYPH
10_1101-2021_01_07_425794	7	32	time	time	NN
10_1101-2021_01_07_425794	7	33	PCR	PCR	NNP
10_1101-2021_01_07_425794	7	34	validated	validate	VBN
10_1101-2021_01_07_425794	7	35	genes	gene	NNS
10_1101-2021_01_07_425794	7	36	,	,	,
10_1101-2021_01_07_425794	7	37	known	know	VBN
10_1101-2021_01_07_425794	7	38	titration	titration	NN
10_1101-2021_01_07_425794	7	39	ratios	ratio	NNS
10_1101-2021_01_07_425794	7	40	of	of	IN
10_1101-2021_01_07_425794	7	41	gene	gene	NN
10_1101-2021_01_07_425794	7	42	expression	expression	NN
10_1101-2021_01_07_425794	7	43	and	and	CC
10_1101-2021_01_07_425794	7	44	microarray	microarray	JJ
10_1101-2021_01_07_425794	7	45	expression	expression	NN
10_1101-2021_01_07_425794	7	46	data	datum	NNS
10_1101-2021_01_07_425794	7	47	.	.	.
10_1101-2021_01_07_425794	8	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	8	2	also	also	RB
10_1101-2021_01_07_425794	8	3	found	find	VBD
10_1101-2021_01_07_425794	8	4	that	that	IN
10_1101-2021_01_07_425794	8	5	the	the	DT
10_1101-2021_01_07_425794	8	6	recent	recent	JJ
10_1101-2021_01_07_425794	8	7	expansion	expansion	NN
10_1101-2021_01_07_425794	8	8	of	of	IN
10_1101-2021_01_07_425794	8	9	the	the	DT
10_1101-2021_01_07_425794	8	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	8	11	annotation	annotation	NN
10_1101-2021_01_07_425794	8	12	has	have	VBZ
10_1101-2021_01_07_425794	8	13	led	lead	VBN
10_1101-2021_01_07_425794	8	14	to	to	IN
10_1101-2021_01_07_425794	8	15	a	a	DT
10_1101-2021_01_07_425794	8	16	decrease	decrease	NN
10_1101-2021_01_07_425794	8	17	in	in	IN
10_1101-2021_01_07_425794	8	18	its	-PRON-	PRP$
10_1101-2021_01_07_425794	8	19	annotation	annotation	NN
10_1101-2021_01_07_425794	8	20	accuracy	accuracy	NN
10_1101-2021_01_07_425794	8	21	.	.	.
10_1101-2021_01_07_425794	9	1	Finally	finally	RB
10_1101-2021_01_07_425794	9	2	,	,	,
10_1101-2021_01_07_425794	9	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	9	4	demonstrated	demonstrate	VBD
10_1101-2021_01_07_425794	9	5	that	that	IN
10_1101-2021_01_07_425794	9	6	the	the	DT
10_1101-2021_01_07_425794	9	7	RNA	RNA	NNP
10_1101-2021_01_07_425794	9	8	-	-	HYPH
10_1101-2021_01_07_425794	9	9	seq	seq	NN
10_1101-2021_01_07_425794	9	10	quantification	quantification	NN
10_1101-2021_01_07_425794	9	11	differences	difference	NNS
10_1101-2021_01_07_425794	9	12	observed	observe	VBN
10_1101-2021_01_07_425794	9	13	between	between	IN
10_1101-2021_01_07_425794	9	14	different	different	JJ
10_1101-2021_01_07_425794	9	15	annotations	annotation	NNS
10_1101-2021_01_07_425794	9	16	were	be	VBD
10_1101-2021_01_07_425794	9	17	not	not	RB
10_1101-2021_01_07_425794	9	18	affected	affect	VBN
10_1101-2021_01_07_425794	9	19	by	by	IN
10_1101-2021_01_07_425794	9	20	the	the	DT
10_1101-2021_01_07_425794	9	21	use	use	NN
10_1101-2021_01_07_425794	9	22	of	of	IN
10_1101-2021_01_07_425794	9	23	different	different	JJ
10_1101-2021_01_07_425794	9	24	normalization	normalization	NN
10_1101-2021_01_07_425794	9	25	methods	method	NNS
10_1101-2021_01_07_425794	9	26	.	.	.
10_1101-2021_01_07_425794	10	1	*	*	NFP
10_1101-2021_01_07_425794	10	2	To	to	IN
10_1101-2021_01_07_425794	10	3	whom	whom	WP
10_1101-2021_01_07_425794	10	4	correspondence	correspondence	NN
10_1101-2021_01_07_425794	10	5	should	should	MD
10_1101-2021_01_07_425794	10	6	be	be	VB
10_1101-2021_01_07_425794	10	7	addressed	address	VBN
10_1101-2021_01_07_425794	10	8	.	.	.
10_1101-2021_01_07_425794	11	1	Tel	tel	NN
10_1101-2021_01_07_425794	11	2	:	:	:
10_1101-2021_01_07_425794	11	3	+61	+61	NNP
10_1101-2021_01_07_425794	11	4	3	3	CD
10_1101-2021_01_07_425794	11	5	9496	9496	CD
10_1101-2021_01_07_425794	11	6	5726	5726	CD
10_1101-2021_01_07_425794	11	7	;	;	:
10_1101-2021_01_07_425794	11	8	Fax	fax	NN
10_1101-2021_01_07_425794	11	9	:	:	:
10_1101-2021_01_07_425794	11	10	+61	+61	NNP
10_1101-2021_01_07_425794	11	11	3	3	CD
10_1101-2021_01_07_425794	11	12	9496	9496	CD
10_1101-2021_01_07_425794	11	13	5334	5334	CD
10_1101-2021_01_07_425794	11	14	;	;	:
10_1101-2021_01_07_425794	11	15	Email	email	NN
10_1101-2021_01_07_425794	11	16	:	:	:
10_1101-2021_01_07_425794	11	17	Wei.Shi@onjcri.org.au	wei.shi@onjcri.org.au	NN
10_1101-2021_01_07_425794	11	18	1	1	CD
10_1101-2021_01_07_425794	11	19	.CC	.CC	:
10_1101-2021_01_07_425794	11	20	-	-	HYPH
10_1101-2021_01_07_425794	11	21	BY	by	IN
10_1101-2021_01_07_425794	11	22	-	-	HYPH
10_1101-2021_01_07_425794	11	23	NC	NC	NNP
10_1101-2021_01_07_425794	11	24	-	-	HYPH
10_1101-2021_01_07_425794	11	25	ND	ND	NNP
10_1101-2021_01_07_425794	11	26	4.0	4.0	CD
10_1101-2021_01_07_425794	11	27	International	international	JJ
10_1101-2021_01_07_425794	11	28	licensemade	licensemade	NN
10_1101-2021_01_07_425794	11	29	available	available	JJ
10_1101-2021_01_07_425794	11	30	under	under	IN
10_1101-2021_01_07_425794	11	31	a	a	DT
10_1101-2021_01_07_425794	11	32	(	(	-LRB-
10_1101-2021_01_07_425794	11	33	which	which	WDT
10_1101-2021_01_07_425794	11	34	was	be	VBD
10_1101-2021_01_07_425794	11	35	not	not	RB
10_1101-2021_01_07_425794	11	36	certified	certify	VBN
10_1101-2021_01_07_425794	11	37	by	by	IN
10_1101-2021_01_07_425794	11	38	peer	peer	NN
10_1101-2021_01_07_425794	11	39	review	review	NN
10_1101-2021_01_07_425794	11	40	)	)	-RRB-
10_1101-2021_01_07_425794	11	41	is	be	VBZ
10_1101-2021_01_07_425794	11	42	the	the	DT
10_1101-2021_01_07_425794	11	43	author	author	NN
10_1101-2021_01_07_425794	11	44	/	/	SYM
10_1101-2021_01_07_425794	11	45	funder	funder	NN
10_1101-2021_01_07_425794	11	46	,	,	,
10_1101-2021_01_07_425794	11	47	who	who	WP
10_1101-2021_01_07_425794	11	48	has	have	VBZ
10_1101-2021_01_07_425794	11	49	granted	grant	VBN
10_1101-2021_01_07_425794	11	50	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	11	51	a	a	DT
10_1101-2021_01_07_425794	11	52	license	license	NN
10_1101-2021_01_07_425794	11	53	to	to	TO
10_1101-2021_01_07_425794	11	54	display	display	VB
10_1101-2021_01_07_425794	11	55	the	the	DT
10_1101-2021_01_07_425794	11	56	preprint	preprint	NN
10_1101-2021_01_07_425794	11	57	in	in	IN
10_1101-2021_01_07_425794	11	58	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	11	59	.	.	.
10_1101-2021_01_07_425794	12	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	12	2	is	be	VBZ
10_1101-2021_01_07_425794	12	3	The	the	DT
10_1101-2021_01_07_425794	12	4	copyright	copyright	NN
10_1101-2021_01_07_425794	12	5	holder	holder	NN
10_1101-2021_01_07_425794	12	6	for	for	IN
10_1101-2021_01_07_425794	12	7	this	this	DT
10_1101-2021_01_07_425794	12	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	12	9	version	version	NN
10_1101-2021_01_07_425794	12	10	posted	post	VBD
10_1101-2021_01_07_425794	12	11	January	January	NNP
10_1101-2021_01_07_425794	12	12	8	8	CD
10_1101-2021_01_07_425794	12	13	,	,	,
10_1101-2021_01_07_425794	12	14	2021	2021	CD
10_1101-2021_01_07_425794	12	15	.	.	.
10_1101-2021_01_07_425794	12	16	;	;	:
10_1101-2021_01_07_425794	12	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	12	18	:	:	:
10_1101-2021_01_07_425794	12	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	12	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	12	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	12	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	12	23	1	1	CD
10_1101-2021_01_07_425794	12	24	INTRODUCTION	introduction	NN
10_1101-2021_01_07_425794	12	25	Gene	gene	NN
10_1101-2021_01_07_425794	12	26	expression	expression	NN
10_1101-2021_01_07_425794	12	27	profiling	profiling	NN
10_1101-2021_01_07_425794	12	28	using	use	VBG
10_1101-2021_01_07_425794	12	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	12	30	sequencing	sequencing	NN
10_1101-2021_01_07_425794	12	31	(	(	-LRB-
10_1101-2021_01_07_425794	12	32	RNA	RNA	NNP
10_1101-2021_01_07_425794	12	33	-	-	HYPH
10_1101-2021_01_07_425794	12	34	seq	seq	NNP
10_1101-2021_01_07_425794	12	35	)	)	-RRB-
10_1101-2021_01_07_425794	12	36	is	be	VBZ
10_1101-2021_01_07_425794	12	37	a	a	DT
10_1101-2021_01_07_425794	12	38	core	core	NN
10_1101-2021_01_07_425794	12	39	activity	activity	NN
10_1101-2021_01_07_425794	12	40	in	in	IN
10_1101-2021_01_07_425794	12	41	molec-	molec-	NNP
10_1101-2021_01_07_425794	12	42	ular	ular	NNP
10_1101-2021_01_07_425794	12	43	biology	biology	NN
10_1101-2021_01_07_425794	12	44	.	.	.
10_1101-2021_01_07_425794	13	1	Comprehensive	comprehensive	JJ
10_1101-2021_01_07_425794	13	2	gene	gene	NN
10_1101-2021_01_07_425794	13	3	expression	expression	NN
10_1101-2021_01_07_425794	13	4	analysis	analysis	NN
10_1101-2021_01_07_425794	13	5	in	in	IN
10_1101-2021_01_07_425794	13	6	various	various	JJ
10_1101-2021_01_07_425794	13	7	settings	setting	NNS
10_1101-2021_01_07_425794	13	8	is	be	VBZ
10_1101-2021_01_07_425794	13	9	important	important	JJ
10_1101-2021_01_07_425794	13	10	for	for	IN
10_1101-2021_01_07_425794	13	11	generating	generate	VBG
10_1101-2021_01_07_425794	13	12	hypotheses	hypothesis	NNS
10_1101-2021_01_07_425794	13	13	for	for	IN
10_1101-2021_01_07_425794	13	14	ongoing	ongoing	JJ
10_1101-2021_01_07_425794	13	15	research	research	NN
10_1101-2021_01_07_425794	13	16	,	,	,
10_1101-2021_01_07_425794	13	17	investigating	investigate	VBG
10_1101-2021_01_07_425794	13	18	drug	drug	NN
10_1101-2021_01_07_425794	13	19	-	-	HYPH
10_1101-2021_01_07_425794	13	20	effects	effect	NNS
10_1101-2021_01_07_425794	13	21	in	in	IN
10_1101-2021_01_07_425794	13	22	biological	biological	JJ
10_1101-2021_01_07_425794	13	23	or	or	CC
10_1101-2021_01_07_425794	13	24	clinical	clinical	JJ
10_1101-2021_01_07_425794	13	25	settings	setting	NNS
10_1101-2021_01_07_425794	13	26	and	and	CC
10_1101-2021_01_07_425794	13	27	as	as	IN
10_1101-2021_01_07_425794	13	28	a	a	DT
10_1101-2021_01_07_425794	13	29	diagnostic	diagnostic	JJ
10_1101-2021_01_07_425794	13	30	tool	tool	NN
10_1101-2021_01_07_425794	13	31	.	.	.
10_1101-2021_01_07_425794	14	1	In	in	IN
10_1101-2021_01_07_425794	14	2	this	this	DT
10_1101-2021_01_07_425794	14	3	paper	paper	NN
10_1101-2021_01_07_425794	14	4	,	,	,
10_1101-2021_01_07_425794	14	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	14	6	explore	explore	VBP
10_1101-2021_01_07_425794	14	7	the	the	DT
10_1101-2021_01_07_425794	14	8	fact	fact	NN
10_1101-2021_01_07_425794	14	9	that	that	IN
10_1101-2021_01_07_425794	14	10	a	a	DT
10_1101-2021_01_07_425794	14	11	popular	popular	JJ
10_1101-2021_01_07_425794	14	12	approach	approach	NN
10_1101-2021_01_07_425794	14	13	in	in	IN
10_1101-2021_01_07_425794	14	14	gene	gene	NN
10_1101-2021_01_07_425794	14	15	-	-	HYPH
10_1101-2021_01_07_425794	14	16	level	level	NN
10_1101-2021_01_07_425794	14	17	quantification	quantification	NN
10_1101-2021_01_07_425794	14	18	from	from	IN
10_1101-2021_01_07_425794	14	19	RNA	RNA	NNP
10_1101-2021_01_07_425794	14	20	-	-	HYPH
10_1101-2021_01_07_425794	14	21	seq	seq	NN
10_1101-2021_01_07_425794	14	22	data	datum	NNS
10_1101-2021_01_07_425794	14	23	involves	involve	VBZ
10_1101-2021_01_07_425794	14	24	mapping	mapping	NN
10_1101-2021_01_07_425794	14	25	reads	read	VBZ
10_1101-2021_01_07_425794	14	26	to	to	IN
10_1101-2021_01_07_425794	14	27	a	a	DT
10_1101-2021_01_07_425794	14	28	ref-	ref-	JJ
10_1101-2021_01_07_425794	14	29	erence	erence	NN
10_1101-2021_01_07_425794	14	30	genome	genome	JJ
10_1101-2021_01_07_425794	14	31	and	and	CC
10_1101-2021_01_07_425794	14	32	then	then	RB
10_1101-2021_01_07_425794	14	33	counting	count	VBG
10_1101-2021_01_07_425794	14	34	mapped	map	VBN
10_1101-2021_01_07_425794	14	35	reads	read	NNS
10_1101-2021_01_07_425794	14	36	associated	associate	VBN
10_1101-2021_01_07_425794	14	37	with	with	IN
10_1101-2021_01_07_425794	14	38	each	each	DT
10_1101-2021_01_07_425794	14	39	gene	gene	NN
10_1101-2021_01_07_425794	14	40	[	[	-LRB-
10_1101-2021_01_07_425794	14	41	1	1	CD
10_1101-2021_01_07_425794	14	42	,	,	,
10_1101-2021_01_07_425794	14	43	2	2	CD
10_1101-2021_01_07_425794	14	44	,	,	,
10_1101-2021_01_07_425794	14	45	3	3	CD
10_1101-2021_01_07_425794	14	46	,	,	,
10_1101-2021_01_07_425794	14	47	4	4	CD
10_1101-2021_01_07_425794	14	48	,	,	,
10_1101-2021_01_07_425794	14	49	5	5	CD
10_1101-2021_01_07_425794	14	50	]	]	-RRB-
10_1101-2021_01_07_425794	14	51	.	.	.
10_1101-2021_01_07_425794	15	1	The	the	DT
10_1101-2021_01_07_425794	15	2	process	process	NN
10_1101-2021_01_07_425794	15	3	of	of	IN
10_1101-2021_01_07_425794	15	4	counting	count	VBG
10_1101-2021_01_07_425794	15	5	mapped	map	VBN
10_1101-2021_01_07_425794	15	6	reads	read	NNS
10_1101-2021_01_07_425794	15	7	to	to	IN
10_1101-2021_01_07_425794	15	8	genes	gene	NNS
10_1101-2021_01_07_425794	15	9	requires	require	VBZ
10_1101-2021_01_07_425794	15	10	a	a	DT
10_1101-2021_01_07_425794	15	11	database	database	NN
10_1101-2021_01_07_425794	15	12	of	of	IN
10_1101-2021_01_07_425794	15	13	known	know	VBN
10_1101-2021_01_07_425794	15	14	genes	gene	NNS
10_1101-2021_01_07_425794	15	15	.	.	.
10_1101-2021_01_07_425794	16	1	A	a	DT
10_1101-2021_01_07_425794	16	2	gene	gene	NN
10_1101-2021_01_07_425794	16	3	is	be	VBZ
10_1101-2021_01_07_425794	16	4	only	only	RB
10_1101-2021_01_07_425794	16	5	quantified	quantify	VBN
10_1101-2021_01_07_425794	16	6	if	if	IN
10_1101-2021_01_07_425794	16	7	it	-PRON-	PRP
10_1101-2021_01_07_425794	16	8	or	or	CC
10_1101-2021_01_07_425794	16	9	its	-PRON-	PRP$
10_1101-2021_01_07_425794	16	10	components	component	NNS
10_1101-2021_01_07_425794	16	11	have	have	VBP
10_1101-2021_01_07_425794	16	12	genomic	genomic	JJ
10_1101-2021_01_07_425794	16	13	coordinates	coordinate	NNS
10_1101-2021_01_07_425794	16	14	already	already	RB
10_1101-2021_01_07_425794	16	15	defined	define	VBN
10_1101-2021_01_07_425794	16	16	with	with	IN
10_1101-2021_01_07_425794	16	17	respect	respect	NN
10_1101-2021_01_07_425794	16	18	to	to	IN
10_1101-2021_01_07_425794	16	19	the	the	DT
10_1101-2021_01_07_425794	16	20	genome	genome	JJ
10_1101-2021_01_07_425794	16	21	sequence	sequence	NN
10_1101-2021_01_07_425794	16	22	in	in	IN
10_1101-2021_01_07_425794	16	23	a	a	DT
10_1101-2021_01_07_425794	16	24	process	process	NN
10_1101-2021_01_07_425794	16	25	called	call	VBN
10_1101-2021_01_07_425794	16	26	annotation	annotation	NN
10_1101-2021_01_07_425794	16	27	.	.	.
10_1101-2021_01_07_425794	17	1	For	for	IN
10_1101-2021_01_07_425794	17	2	each	each	DT
10_1101-2021_01_07_425794	17	3	genome	genome	JJ
10_1101-2021_01_07_425794	17	4	annotation	annotation	NN
10_1101-2021_01_07_425794	17	5	model	model	NN
10_1101-2021_01_07_425794	17	6	,	,	,
10_1101-2021_01_07_425794	17	7	a	a	DT
10_1101-2021_01_07_425794	17	8	different	different	JJ
10_1101-2021_01_07_425794	17	9	set	set	NN
10_1101-2021_01_07_425794	17	10	of	of	IN
10_1101-2021_01_07_425794	17	11	annotation	annotation	NN
10_1101-2021_01_07_425794	17	12	techniques	technique	NNS
10_1101-2021_01_07_425794	17	13	and	and	CC
10_1101-2021_01_07_425794	17	14	information	information	NN
10_1101-2021_01_07_425794	17	15	sources	source	NNS
10_1101-2021_01_07_425794	17	16	are	be	VBP
10_1101-2021_01_07_425794	17	17	used	use	VBN
10_1101-2021_01_07_425794	17	18	and	and	CC
10_1101-2021_01_07_425794	17	19	as	as	IN
10_1101-2021_01_07_425794	17	20	such	such	JJ
10_1101-2021_01_07_425794	17	21	,	,	,
10_1101-2021_01_07_425794	17	22	these	these	DT
10_1101-2021_01_07_425794	17	23	annotations	annotation	NNS
10_1101-2021_01_07_425794	17	24	vary	vary	VBP
10_1101-2021_01_07_425794	17	25	in	in	IN
10_1101-2021_01_07_425794	17	26	terms	term	NNS
10_1101-2021_01_07_425794	17	27	of	of	IN
10_1101-2021_01_07_425794	17	28	comprehensiveness	comprehensiveness	NN
10_1101-2021_01_07_425794	17	29	and	and	CC
10_1101-2021_01_07_425794	17	30	accuracy	accuracy	NN
10_1101-2021_01_07_425794	17	31	of	of	IN
10_1101-2021_01_07_425794	17	32	annotated	annotate	VBN
10_1101-2021_01_07_425794	17	33	genomic	genomic	JJ
10_1101-2021_01_07_425794	17	34	features	feature	NNS
10_1101-2021_01_07_425794	17	35	.	.	.
10_1101-2021_01_07_425794	18	1	Annotation	annotation	NN
10_1101-2021_01_07_425794	18	2	techniques	technique	NNS
10_1101-2021_01_07_425794	18	3	often	often	RB
10_1101-2021_01_07_425794	18	4	include	include	VBP
10_1101-2021_01_07_425794	18	5	computer	computer	NN
10_1101-2021_01_07_425794	18	6	-	-	HYPH
10_1101-2021_01_07_425794	18	7	based	base	VBN
10_1101-2021_01_07_425794	18	8	predic-	predic-	NN
10_1101-2021_01_07_425794	18	9	tions	tion	NNS
10_1101-2021_01_07_425794	18	10	and/or	and/or	CC
10_1101-2021_01_07_425794	18	11	evidence	evidence	NN
10_1101-2021_01_07_425794	18	12	-	-	HYPH
10_1101-2021_01_07_425794	18	13	based	base	VBN
10_1101-2021_01_07_425794	18	14	techniques	technique	NNS
10_1101-2021_01_07_425794	18	15	such	such	JJ
10_1101-2021_01_07_425794	18	16	as	as	IN
10_1101-2021_01_07_425794	18	17	manual	manual	JJ
10_1101-2021_01_07_425794	18	18	curation	curation	NN
10_1101-2021_01_07_425794	18	19	[	[	-LRB-
10_1101-2021_01_07_425794	18	20	6	6	CD
10_1101-2021_01_07_425794	18	21	,	,	,
10_1101-2021_01_07_425794	18	22	7	7	CD
10_1101-2021_01_07_425794	18	23	]	]	-RRB-
10_1101-2021_01_07_425794	18	24	.	.	.
10_1101-2021_01_07_425794	19	1	Computer	computer	NN
10_1101-2021_01_07_425794	19	2	-	-	HYPH
10_1101-2021_01_07_425794	19	3	based	base	VBN
10_1101-2021_01_07_425794	19	4	predictions	prediction	NNS
10_1101-2021_01_07_425794	19	5	result	result	VBP
10_1101-2021_01_07_425794	19	6	in	in	IN
10_1101-2021_01_07_425794	19	7	more	more	JJR
10_1101-2021_01_07_425794	19	8	complex	complex	JJ
10_1101-2021_01_07_425794	19	9	gene	gene	NN
10_1101-2021_01_07_425794	19	10	models	model	NNS
10_1101-2021_01_07_425794	19	11	that	that	WDT
10_1101-2021_01_07_425794	19	12	have	have	VBP
10_1101-2021_01_07_425794	19	13	a	a	DT
10_1101-2021_01_07_425794	19	14	higher	high	JJR
10_1101-2021_01_07_425794	19	15	proportion	proportion	NN
10_1101-2021_01_07_425794	19	16	of	of	IN
10_1101-2021_01_07_425794	19	17	predic-	predic-	JJ
10_1101-2021_01_07_425794	19	18	tive	tive	JJ
10_1101-2021_01_07_425794	19	19	genomic	genomic	JJ
10_1101-2021_01_07_425794	19	20	features	feature	NNS
10_1101-2021_01_07_425794	19	21	while	while	IN
10_1101-2021_01_07_425794	19	22	evidence	evidence	NN
10_1101-2021_01_07_425794	19	23	-	-	HYPH
10_1101-2021_01_07_425794	19	24	based	base	VBN
10_1101-2021_01_07_425794	19	25	generated	generate	VBN
10_1101-2021_01_07_425794	19	26	gene	gene	NN
10_1101-2021_01_07_425794	19	27	models	model	NNS
10_1101-2021_01_07_425794	19	28	are	be	VBP
10_1101-2021_01_07_425794	19	29	simpler	simple	JJR
10_1101-2021_01_07_425794	19	30	with	with	IN
10_1101-2021_01_07_425794	19	31	fewer	few	JJR
10_1101-2021_01_07_425794	19	32	genes	gene	NNS
10_1101-2021_01_07_425794	19	33	and	and	CC
10_1101-2021_01_07_425794	19	34	isoforms	isoform	NNS
10_1101-2021_01_07_425794	19	35	.	.	.
10_1101-2021_01_07_425794	20	1	Common	common	JJ
10_1101-2021_01_07_425794	20	2	annotation	annotation	NN
10_1101-2021_01_07_425794	20	3	models	model	NNS
10_1101-2021_01_07_425794	20	4	for	for	IN
10_1101-2021_01_07_425794	20	5	human	human	NN
10_1101-2021_01_07_425794	20	6	and	and	CC
10_1101-2021_01_07_425794	20	7	mouse	mouse	NN
10_1101-2021_01_07_425794	20	8	genomes	genome	NNS
10_1101-2021_01_07_425794	20	9	include	include	VBP
10_1101-2021_01_07_425794	20	10	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	20	11	[	[	-LRB-
10_1101-2021_01_07_425794	20	12	8	8	CD
10_1101-2021_01_07_425794	20	13	]	]	-RRB-
10_1101-2021_01_07_425794	20	14	,	,	,
10_1101-2021_01_07_425794	20	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	20	16	[	[	-LRB-
10_1101-2021_01_07_425794	20	17	9	9	CD
10_1101-2021_01_07_425794	20	18	]	]	-RRB-
10_1101-2021_01_07_425794	20	19	,	,	,
10_1101-2021_01_07_425794	20	20	GENCODE	GENCODE	NNP
10_1101-2021_01_07_425794	20	21	[	[	-LRB-
10_1101-2021_01_07_425794	20	22	10	10	CD
10_1101-2021_01_07_425794	20	23	]	]	-RRB-
10_1101-2021_01_07_425794	20	24	and	and	CC
10_1101-2021_01_07_425794	20	25	UCSC	UCSC	NNP
10_1101-2021_01_07_425794	20	26	[	[	-LRB-
10_1101-2021_01_07_425794	20	27	11	11	CD
10_1101-2021_01_07_425794	20	28	]	]	-RRB-
10_1101-2021_01_07_425794	20	29	annotations	annotation	NNS
10_1101-2021_01_07_425794	20	30	.	.	.
10_1101-2021_01_07_425794	21	1	Annotations	annotation	NNS
10_1101-2021_01_07_425794	21	2	are	be	VBP
10_1101-2021_01_07_425794	21	3	,	,	,
10_1101-2021_01_07_425794	21	4	therefore	therefore	RB
10_1101-2021_01_07_425794	21	5	,	,	,
10_1101-2021_01_07_425794	21	6	an	an	DT
10_1101-2021_01_07_425794	21	7	important	important	JJ
10_1101-2021_01_07_425794	21	8	component	component	NN
10_1101-2021_01_07_425794	21	9	in	in	IN
10_1101-2021_01_07_425794	21	10	an	an	DT
10_1101-2021_01_07_425794	21	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	21	12	-	-	HYPH
10_1101-2021_01_07_425794	21	13	seq	seq	NN
10_1101-2021_01_07_425794	21	14	analysis	analysis	NN
10_1101-2021_01_07_425794	21	15	as	as	IN
10_1101-2021_01_07_425794	21	16	the	the	DT
10_1101-2021_01_07_425794	21	17	results	result	NNS
10_1101-2021_01_07_425794	21	18	are	be	VBP
10_1101-2021_01_07_425794	21	19	dependent	dependent	JJ
10_1101-2021_01_07_425794	21	20	on	on	IN
10_1101-2021_01_07_425794	21	21	what	what	WP
10_1101-2021_01_07_425794	21	22	is	be	VBZ
10_1101-2021_01_07_425794	21	23	known	know	VBN
10_1101-2021_01_07_425794	21	24	in	in	IN
10_1101-2021_01_07_425794	21	25	the	the	DT
10_1101-2021_01_07_425794	21	26	annotation	annotation	NN
10_1101-2021_01_07_425794	21	27	database	database	NN
10_1101-2021_01_07_425794	21	28	.	.	.
10_1101-2021_01_07_425794	22	1	Despite	despite	IN
10_1101-2021_01_07_425794	22	2	the	the	DT
10_1101-2021_01_07_425794	22	3	importance	importance	NN
10_1101-2021_01_07_425794	22	4	of	of	IN
10_1101-2021_01_07_425794	22	5	gene	gene	NN
10_1101-2021_01_07_425794	22	6	annotations	annotation	NNS
10_1101-2021_01_07_425794	22	7	in	in	IN
10_1101-2021_01_07_425794	22	8	RNA	RNA	NNP
10_1101-2021_01_07_425794	22	9	-	-	HYPH
10_1101-2021_01_07_425794	22	10	seq	seq	NN
10_1101-2021_01_07_425794	22	11	data	datum	NNS
10_1101-2021_01_07_425794	22	12	analysis	analysis	NN
10_1101-2021_01_07_425794	22	13	,	,	,
10_1101-2021_01_07_425794	22	14	very	very	RB
10_1101-2021_01_07_425794	22	15	little	little	JJ
10_1101-2021_01_07_425794	22	16	re-	re-	JJ
10_1101-2021_01_07_425794	22	17	search	search	NN
10_1101-2021_01_07_425794	22	18	has	have	VBZ
10_1101-2021_01_07_425794	22	19	been	be	VBN
10_1101-2021_01_07_425794	22	20	conducted	conduct	VBN
10_1101-2021_01_07_425794	22	21	to	to	TO
10_1101-2021_01_07_425794	22	22	examine	examine	VB
10_1101-2021_01_07_425794	22	23	how	how	WRB
10_1101-2021_01_07_425794	22	24	differences	difference	NNS
10_1101-2021_01_07_425794	22	25	in	in	IN
10_1101-2021_01_07_425794	22	26	annotations	annotation	NNS
10_1101-2021_01_07_425794	22	27	impact	impact	NN
10_1101-2021_01_07_425794	22	28	on	on	IN
10_1101-2021_01_07_425794	22	29	gene	gene	NN
10_1101-2021_01_07_425794	22	30	expression	expression	NN
10_1101-2021_01_07_425794	22	31	quantification	quantification	NN
10_1101-2021_01_07_425794	22	32	,	,	,
10_1101-2021_01_07_425794	22	33	which	which	WDT
10_1101-2021_01_07_425794	22	34	is	be	VBZ
10_1101-2021_01_07_425794	22	35	crucial	crucial	JJ
10_1101-2021_01_07_425794	22	36	for	for	IN
10_1101-2021_01_07_425794	22	37	downstream	downstream	JJ
10_1101-2021_01_07_425794	22	38	analyses	analysis	NNS
10_1101-2021_01_07_425794	22	39	such	such	JJ
10_1101-2021_01_07_425794	22	40	as	as	IN
10_1101-2021_01_07_425794	22	41	discovery	discovery	NN
10_1101-2021_01_07_425794	22	42	of	of	IN
10_1101-2021_01_07_425794	22	43	differentially	differentially	RB
10_1101-2021_01_07_425794	22	44	expressed	express	VBN
10_1101-2021_01_07_425794	22	45	genes	gene	NNS
10_1101-2021_01_07_425794	22	46	and	and	CC
10_1101-2021_01_07_425794	22	47	identification	identification	NN
10_1101-2021_01_07_425794	22	48	of	of	IN
10_1101-2021_01_07_425794	22	49	perturbed	perturb	VBN
10_1101-2021_01_07_425794	22	50	pathways	pathway	NNS
10_1101-2021_01_07_425794	22	51	.	.	.
10_1101-2021_01_07_425794	23	1	Previous	previous	JJ
10_1101-2021_01_07_425794	23	2	studies	study	NNS
10_1101-2021_01_07_425794	23	3	compared	compare	VBD
10_1101-2021_01_07_425794	23	4	the	the	DT
10_1101-2021_01_07_425794	23	5	effect	effect	NN
10_1101-2021_01_07_425794	23	6	of	of	IN
10_1101-2021_01_07_425794	23	7	human	human	JJ
10_1101-2021_01_07_425794	23	8	genome	genome	JJ
10_1101-2021_01_07_425794	23	9	annotations	annotation	NNS
10_1101-2021_01_07_425794	23	10	from	from	IN
10_1101-2021_01_07_425794	23	11	popular	popular	JJ
10_1101-2021_01_07_425794	23	12	databases	database	NNS
10_1101-2021_01_07_425794	23	13	including	include	VBG
10_1101-2021_01_07_425794	23	14	En-	en-	XX
10_1101-2021_01_07_425794	23	15	sembl	sembl	NN
10_1101-2021_01_07_425794	23	16	,	,	,
10_1101-2021_01_07_425794	23	17	GENCODE	GENCODE	NNP
10_1101-2021_01_07_425794	23	18	and	and	CC
10_1101-2021_01_07_425794	23	19	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	23	20	on	on	IN
10_1101-2021_01_07_425794	23	21	various	various	JJ
10_1101-2021_01_07_425794	23	22	aspects	aspect	NNS
10_1101-2021_01_07_425794	23	23	of	of	IN
10_1101-2021_01_07_425794	23	24	RNA	RNA	NNP
10_1101-2021_01_07_425794	23	25	-	-	HYPH
10_1101-2021_01_07_425794	23	26	seq	seq	NN
10_1101-2021_01_07_425794	23	27	analysis	analysis	NN
10_1101-2021_01_07_425794	23	28	and	and	CC
10_1101-2021_01_07_425794	23	29	they	-PRON-	PRP
10_1101-2021_01_07_425794	23	30	showed	show	VBD
10_1101-2021_01_07_425794	23	31	that	that	IN
10_1101-2021_01_07_425794	23	32	the	the	DT
10_1101-2021_01_07_425794	23	33	choice	choice	NN
10_1101-2021_01_07_425794	23	34	of	of	IN
10_1101-2021_01_07_425794	23	35	annotations	annotation	NNS
10_1101-2021_01_07_425794	23	36	had	have	VBD
10_1101-2021_01_07_425794	23	37	an	an	DT
10_1101-2021_01_07_425794	23	38	impact	impact	NN
10_1101-2021_01_07_425794	23	39	on	on	IN
10_1101-2021_01_07_425794	23	40	gene	gene	NN
10_1101-2021_01_07_425794	23	41	-	-	HYPH
10_1101-2021_01_07_425794	23	42	level	level	NN
10_1101-2021_01_07_425794	23	43	quantification	quantification	NN
10_1101-2021_01_07_425794	23	44	in	in	IN
10_1101-2021_01_07_425794	23	45	the	the	DT
10_1101-2021_01_07_425794	23	46	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	23	47	seq	seq	NN
10_1101-2021_01_07_425794	23	48	analysis	analysis	NN
10_1101-2021_01_07_425794	23	49	[	[	-LRB-
10_1101-2021_01_07_425794	23	50	12	12	CD
10_1101-2021_01_07_425794	23	51	,	,	,
10_1101-2021_01_07_425794	23	52	13	13	CD
10_1101-2021_01_07_425794	23	53	]	]	-RRB-
10_1101-2021_01_07_425794	23	54	.	.	.
10_1101-2021_01_07_425794	24	1	However	however	RB
10_1101-2021_01_07_425794	24	2	,	,	,
10_1101-2021_01_07_425794	24	3	these	these	DT
10_1101-2021_01_07_425794	24	4	studies	study	NNS
10_1101-2021_01_07_425794	24	5	are	be	VBP
10_1101-2021_01_07_425794	24	6	out	out	IN
10_1101-2021_01_07_425794	24	7	of	of	IN
10_1101-2021_01_07_425794	24	8	date	date	NN
10_1101-2021_01_07_425794	24	9	as	as	IN
10_1101-2021_01_07_425794	24	10	they	-PRON-	PRP
10_1101-2021_01_07_425794	24	11	were	be	VBD
10_1101-2021_01_07_425794	24	12	based	base	VBN
10_1101-2021_01_07_425794	24	13	on	on	IN
10_1101-2021_01_07_425794	24	14	old	old	JJ
10_1101-2021_01_07_425794	24	15	annotations	annotation	NNS
10_1101-2021_01_07_425794	24	16	and	and	CC
10_1101-2021_01_07_425794	24	17	they	-PRON-	PRP
10_1101-2021_01_07_425794	24	18	also	also	RB
10_1101-2021_01_07_425794	24	19	lacked	lack	VBD
10_1101-2021_01_07_425794	24	20	a	a	DT
10_1101-2021_01_07_425794	24	21	reliable	reliable	JJ
10_1101-2021_01_07_425794	24	22	ground	ground	NN
10_1101-2021_01_07_425794	24	23	truth	truth	NN
10_1101-2021_01_07_425794	24	24	for	for	IN
10_1101-2021_01_07_425794	24	25	assessing	assess	VBG
10_1101-2021_01_07_425794	24	26	the	the	DT
10_1101-2021_01_07_425794	24	27	impact	impact	NN
10_1101-2021_01_07_425794	24	28	of	of	IN
10_1101-2021_01_07_425794	24	29	annotation	annotation	NN
10_1101-2021_01_07_425794	24	30	.	.	.
10_1101-2021_01_07_425794	25	1	Major	major	JJ
10_1101-2021_01_07_425794	25	2	annotation	annotation	NN
10_1101-2021_01_07_425794	25	3	databases	database	NNS
10_1101-2021_01_07_425794	25	4	have	have	VBP
10_1101-2021_01_07_425794	25	5	undergone	undergo	VBN
10_1101-2021_01_07_425794	25	6	significant	significant	JJ
10_1101-2021_01_07_425794	25	7	expansions	expansion	NNS
10_1101-2021_01_07_425794	25	8	over	over	IN
10_1101-2021_01_07_425794	25	9	the	the	DT
10_1101-2021_01_07_425794	25	10	years	year	NNS
10_1101-2021_01_07_425794	25	11	,	,	,
10_1101-2021_01_07_425794	25	12	thanks	thank	NNS
10_1101-2021_01_07_425794	25	13	to	to	IN
10_1101-2021_01_07_425794	25	14	the	the	DT
10_1101-2021_01_07_425794	25	15	wide	wide	JJ
10_1101-2021_01_07_425794	25	16	application	application	NN
10_1101-2021_01_07_425794	25	17	of	of	IN
10_1101-2021_01_07_425794	25	18	sequencing	sequence	VBG
10_1101-2021_01_07_425794	25	19	technologies	technology	NNS
10_1101-2021_01_07_425794	25	20	and	and	CC
10_1101-2021_01_07_425794	25	21	the	the	DT
10_1101-2021_01_07_425794	25	22	massive	massive	JJ
10_1101-2021_01_07_425794	25	23	amount	amount	NN
10_1101-2021_01_07_425794	25	24	of	of	IN
10_1101-2021_01_07_425794	25	25	se-	se-	NN
10_1101-2021_01_07_425794	25	26	quencing	quencing	JJ
10_1101-2021_01_07_425794	25	27	data	datum	NNS
10_1101-2021_01_07_425794	25	28	that	that	WDT
10_1101-2021_01_07_425794	25	29	have	have	VBP
10_1101-2021_01_07_425794	25	30	been	be	VBN
10_1101-2021_01_07_425794	25	31	generated	generate	VBN
10_1101-2021_01_07_425794	25	32	across	across	IN
10_1101-2021_01_07_425794	25	33	the	the	DT
10_1101-2021_01_07_425794	25	34	world	world	NN
10_1101-2021_01_07_425794	25	35	.	.	.
10_1101-2021_01_07_425794	26	1	However	however	RB
10_1101-2021_01_07_425794	26	2	,	,	,
10_1101-2021_01_07_425794	26	3	it	-PRON-	PRP
10_1101-2021_01_07_425794	26	4	is	be	VBZ
10_1101-2021_01_07_425794	26	5	unclear	unclear	JJ
10_1101-2021_01_07_425794	26	6	whether	whether	IN
10_1101-2021_01_07_425794	26	7	the	the	DT
10_1101-2021_01_07_425794	26	8	quality	quality	NN
10_1101-2021_01_07_425794	26	9	of	of	IN
10_1101-2021_01_07_425794	26	10	gene	gene	NN
10_1101-2021_01_07_425794	26	11	annotations	annotation	NNS
10_1101-2021_01_07_425794	26	12	have	have	VBP
10_1101-2021_01_07_425794	26	13	been	be	VBN
10_1101-2021_01_07_425794	26	14	successfully	successfully	RB
10_1101-2021_01_07_425794	26	15	maintained	maintain	VBN
10_1101-2021_01_07_425794	26	16	.	.	.
10_1101-2021_01_07_425794	27	1	A	a	DT
10_1101-2021_01_07_425794	27	2	recent	recent	JJ
10_1101-2021_01_07_425794	27	3	study	study	NN
10_1101-2021_01_07_425794	27	4	sug-	sug-	NN
10_1101-2021_01_07_425794	27	5	gested	geste	VBD
10_1101-2021_01_07_425794	27	6	that	that	IN
10_1101-2021_01_07_425794	27	7	gene	gene	NN
10_1101-2021_01_07_425794	27	8	annotations	annotation	NNS
10_1101-2021_01_07_425794	27	9	have	have	VBP
10_1101-2021_01_07_425794	27	10	become	become	VBN
10_1101-2021_01_07_425794	27	11	less	less	RBR
10_1101-2021_01_07_425794	27	12	accurate	accurate	JJ
10_1101-2021_01_07_425794	27	13	and	and	CC
10_1101-2021_01_07_425794	27	14	lagging	lagging	JJ
10_1101-2021_01_07_425794	27	15	during	during	IN
10_1101-2021_01_07_425794	27	16	this	this	DT
10_1101-2021_01_07_425794	27	17	expansion	expansion	NN
10_1101-2021_01_07_425794	27	18	[	[	-LRB-
10_1101-2021_01_07_425794	27	19	6	6	CD
10_1101-2021_01_07_425794	27	20	]	]	-RRB-
10_1101-2021_01_07_425794	27	21	.	.	.
10_1101-2021_01_07_425794	28	1	This	this	DT
10_1101-2021_01_07_425794	28	2	can	can	MD
10_1101-2021_01_07_425794	28	3	be	be	VB
10_1101-2021_01_07_425794	28	4	attributed	attribute	VBN
10_1101-2021_01_07_425794	28	5	to	to	IN
10_1101-2021_01_07_425794	28	6	the	the	DT
10_1101-2021_01_07_425794	28	7	errors	error	NNS
10_1101-2021_01_07_425794	28	8	from	from	IN
10_1101-2021_01_07_425794	28	9	sequencing	sequence	VBG
10_1101-2021_01_07_425794	28	10	experiments	experiment	NNS
10_1101-2021_01_07_425794	28	11	,	,	,
10_1101-2021_01_07_425794	28	12	sequence	sequence	NN
10_1101-2021_01_07_425794	28	13	analysis	analysis	NN
10_1101-2021_01_07_425794	28	14	2	2	CD
10_1101-2021_01_07_425794	28	15	.CC	.CC	,
10_1101-2021_01_07_425794	28	16	-	-	HYPH
10_1101-2021_01_07_425794	28	17	BY	by	IN
10_1101-2021_01_07_425794	28	18	-	-	HYPH
10_1101-2021_01_07_425794	28	19	NC	NC	NNP
10_1101-2021_01_07_425794	28	20	-	-	HYPH
10_1101-2021_01_07_425794	28	21	ND	ND	NNP
10_1101-2021_01_07_425794	28	22	4.0	4.0	CD
10_1101-2021_01_07_425794	28	23	International	international	JJ
10_1101-2021_01_07_425794	28	24	licensemade	licensemade	NN
10_1101-2021_01_07_425794	28	25	available	available	JJ
10_1101-2021_01_07_425794	28	26	under	under	IN
10_1101-2021_01_07_425794	28	27	a	a	DT
10_1101-2021_01_07_425794	28	28	(	(	-LRB-
10_1101-2021_01_07_425794	28	29	which	which	WDT
10_1101-2021_01_07_425794	28	30	was	be	VBD
10_1101-2021_01_07_425794	28	31	not	not	RB
10_1101-2021_01_07_425794	28	32	certified	certify	VBN
10_1101-2021_01_07_425794	28	33	by	by	IN
10_1101-2021_01_07_425794	28	34	peer	peer	NN
10_1101-2021_01_07_425794	28	35	review	review	NN
10_1101-2021_01_07_425794	28	36	)	)	-RRB-
10_1101-2021_01_07_425794	28	37	is	be	VBZ
10_1101-2021_01_07_425794	28	38	the	the	DT
10_1101-2021_01_07_425794	28	39	author	author	NN
10_1101-2021_01_07_425794	28	40	/	/	SYM
10_1101-2021_01_07_425794	28	41	funder	funder	NN
10_1101-2021_01_07_425794	28	42	,	,	,
10_1101-2021_01_07_425794	28	43	who	who	WP
10_1101-2021_01_07_425794	28	44	has	have	VBZ
10_1101-2021_01_07_425794	28	45	granted	grant	VBN
10_1101-2021_01_07_425794	28	46	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	28	47	a	a	DT
10_1101-2021_01_07_425794	28	48	license	license	NN
10_1101-2021_01_07_425794	28	49	to	to	TO
10_1101-2021_01_07_425794	28	50	display	display	VB
10_1101-2021_01_07_425794	28	51	the	the	DT
10_1101-2021_01_07_425794	28	52	preprint	preprint	NN
10_1101-2021_01_07_425794	28	53	in	in	IN
10_1101-2021_01_07_425794	28	54	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	28	55	.	.	.
10_1101-2021_01_07_425794	29	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	29	2	is	be	VBZ
10_1101-2021_01_07_425794	29	3	The	the	DT
10_1101-2021_01_07_425794	29	4	copyright	copyright	NN
10_1101-2021_01_07_425794	29	5	holder	holder	NN
10_1101-2021_01_07_425794	29	6	for	for	IN
10_1101-2021_01_07_425794	29	7	this	this	DT
10_1101-2021_01_07_425794	29	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	29	9	version	version	NN
10_1101-2021_01_07_425794	29	10	posted	post	VBD
10_1101-2021_01_07_425794	29	11	January	January	NNP
10_1101-2021_01_07_425794	29	12	8	8	CD
10_1101-2021_01_07_425794	29	13	,	,	,
10_1101-2021_01_07_425794	29	14	2021	2021	CD
10_1101-2021_01_07_425794	29	15	.	.	.
10_1101-2021_01_07_425794	29	16	;	;	:
10_1101-2021_01_07_425794	29	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	29	18	:	:	:
10_1101-2021_01_07_425794	29	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	29	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	29	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	29	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	29	23	or	or	CC
10_1101-2021_01_07_425794	29	24	automation	automation	NN
10_1101-2021_01_07_425794	29	25	in	in	IN
10_1101-2021_01_07_425794	29	26	the	the	DT
10_1101-2021_01_07_425794	29	27	annotation	annotation	NN
10_1101-2021_01_07_425794	29	28	process	process	NN
10_1101-2021_01_07_425794	29	29	.	.	.
10_1101-2021_01_07_425794	30	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	30	2	is	be	VBZ
10_1101-2021_01_07_425794	30	3	important	important	JJ
10_1101-2021_01_07_425794	30	4	to	to	TO
10_1101-2021_01_07_425794	30	5	systematically	systematically	RB
10_1101-2021_01_07_425794	30	6	assess	assess	VB
10_1101-2021_01_07_425794	30	7	the	the	DT
10_1101-2021_01_07_425794	30	8	accuracy	accuracy	NN
10_1101-2021_01_07_425794	30	9	of	of	IN
10_1101-2021_01_07_425794	30	10	the	the	DT
10_1101-2021_01_07_425794	30	11	new	new	JJ
10_1101-2021_01_07_425794	30	12	gene	gene	NN
10_1101-2021_01_07_425794	30	13	annotations	annotation	NNS
10_1101-2021_01_07_425794	30	14	generated	generate	VBN
10_1101-2021_01_07_425794	30	15	in	in	IN
10_1101-2021_01_07_425794	30	16	recent	recent	JJ
10_1101-2021_01_07_425794	30	17	years	year	NNS
10_1101-2021_01_07_425794	30	18	to	to	TO
10_1101-2021_01_07_425794	30	19	ensure	ensure	VB
10_1101-2021_01_07_425794	30	20	the	the	DT
10_1101-2021_01_07_425794	30	21	popular	popular	JJ
10_1101-2021_01_07_425794	30	22	annotation	annotation	NN
10_1101-2021_01_07_425794	30	23	databases	database	NNS
10_1101-2021_01_07_425794	30	24	can	can	MD
10_1101-2021_01_07_425794	30	25	continue	continue	VB
10_1101-2021_01_07_425794	30	26	to	to	TO
10_1101-2021_01_07_425794	30	27	be	be	VB
10_1101-2021_01_07_425794	30	28	utilized	utilize	VBN
10_1101-2021_01_07_425794	30	29	by	by	IN
10_1101-2021_01_07_425794	30	30	the	the	DT
10_1101-2021_01_07_425794	30	31	community	community	NN
10_1101-2021_01_07_425794	30	32	for	for	IN
10_1101-2021_01_07_425794	30	33	RNA	RNA	NNP
10_1101-2021_01_07_425794	30	34	-	-	HYPH
10_1101-2021_01_07_425794	30	35	seq	seq	NN
10_1101-2021_01_07_425794	30	36	analysis	analysis	NN
10_1101-2021_01_07_425794	30	37	.	.	.
10_1101-2021_01_07_425794	31	1	Furthermore	furthermore	RB
10_1101-2021_01_07_425794	31	2	,	,	,
10_1101-2021_01_07_425794	31	3	the	the	DT
10_1101-2021_01_07_425794	31	4	use	use	NN
10_1101-2021_01_07_425794	31	5	of	of	IN
10_1101-2021_01_07_425794	31	6	different	different	JJ
10_1101-2021_01_07_425794	31	7	annotations	annotation	NNS
10_1101-2021_01_07_425794	31	8	in	in	IN
10_1101-2021_01_07_425794	31	9	different	different	JJ
10_1101-2021_01_07_425794	31	10	studies	study	NNS
10_1101-2021_01_07_425794	31	11	makes	make	VBZ
10_1101-2021_01_07_425794	31	12	it	-PRON-	PRP
10_1101-2021_01_07_425794	31	13	difficult	difficult	JJ
10_1101-2021_01_07_425794	31	14	for	for	IN
10_1101-2021_01_07_425794	31	15	researchers	researcher	NNS
10_1101-2021_01_07_425794	31	16	to	to	TO
10_1101-2021_01_07_425794	31	17	reproduce	reproduce	VB
10_1101-2021_01_07_425794	31	18	the	the	DT
10_1101-2021_01_07_425794	31	19	findings	finding	NNS
10_1101-2021_01_07_425794	31	20	from	from	IN
10_1101-2021_01_07_425794	31	21	such	such	JJ
10_1101-2021_01_07_425794	31	22	studies	study	NNS
10_1101-2021_01_07_425794	31	23	.	.	.
10_1101-2021_01_07_425794	32	1	For	for	IN
10_1101-2021_01_07_425794	32	2	example	example	NN
10_1101-2021_01_07_425794	32	3	,	,	,
10_1101-2021_01_07_425794	32	4	large	large	JJ
10_1101-2021_01_07_425794	32	5	consortia	consortium	NNS
10_1101-2021_01_07_425794	32	6	such	such	JJ
10_1101-2021_01_07_425794	32	7	as	as	IN
10_1101-2021_01_07_425794	32	8	the	the	DT
10_1101-2021_01_07_425794	32	9	European	European	NNP
10_1101-2021_01_07_425794	32	10	Molecular	Molecular	NNP
10_1101-2021_01_07_425794	32	11	Biology	Biology	NNP
10_1101-2021_01_07_425794	32	12	Laboratory	Laboratory	NNP
10_1101-2021_01_07_425794	32	13	(	(	-LRB-
10_1101-2021_01_07_425794	32	14	EMBL	EMBL	NNP
10_1101-2021_01_07_425794	32	15	)	)	-RRB-
10_1101-2021_01_07_425794	32	16	use	use	VBP
10_1101-2021_01_07_425794	32	17	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	32	18	in	in	IN
10_1101-2021_01_07_425794	32	19	their	-PRON-	PRP$
10_1101-2021_01_07_425794	32	20	studies	study	NNS
10_1101-2021_01_07_425794	32	21	while	while	IN
10_1101-2021_01_07_425794	32	22	the	the	DT
10_1101-2021_01_07_425794	32	23	National	National	NNP
10_1101-2021_01_07_425794	32	24	Centre	Centre	NNP
10_1101-2021_01_07_425794	32	25	for	for	IN
10_1101-2021_01_07_425794	32	26	Biotechnology	Biotechnology	NNP
10_1101-2021_01_07_425794	32	27	Information	Information	NNP
10_1101-2021_01_07_425794	32	28	(	(	-LRB-
10_1101-2021_01_07_425794	32	29	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	32	30	)	)	-RRB-
10_1101-2021_01_07_425794	32	31	tend	tend	VBP
10_1101-2021_01_07_425794	32	32	to	to	TO
10_1101-2021_01_07_425794	32	33	use	use	VB
10_1101-2021_01_07_425794	32	34	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	32	35	.	.	.
10_1101-2021_01_07_425794	33	1	Since	since	IN
10_1101-2021_01_07_425794	33	2	this	this	DT
10_1101-2021_01_07_425794	33	3	can	can	MD
10_1101-2021_01_07_425794	33	4	significantly	significantly	RB
10_1101-2021_01_07_425794	33	5	impact	impact	VB
10_1101-2021_01_07_425794	33	6	on	on	IN
10_1101-2021_01_07_425794	33	7	gene	gene	NN
10_1101-2021_01_07_425794	33	8	expression	expression	NN
10_1101-2021_01_07_425794	33	9	data	datum	NNS
10_1101-2021_01_07_425794	33	10	,	,	,
10_1101-2021_01_07_425794	33	11	there	there	EX
10_1101-2021_01_07_425794	33	12	is	be	VBZ
10_1101-2021_01_07_425794	33	13	a	a	DT
10_1101-2021_01_07_425794	33	14	need	need	NN
10_1101-2021_01_07_425794	33	15	to	to	TO
10_1101-2021_01_07_425794	33	16	develop	develop	VB
10_1101-2021_01_07_425794	33	17	a	a	DT
10_1101-2021_01_07_425794	33	18	comprehensive	comprehensive	JJ
10_1101-2021_01_07_425794	33	19	understanding	understanding	NN
10_1101-2021_01_07_425794	33	20	of	of	IN
10_1101-2021_01_07_425794	33	21	how	how	WRB
10_1101-2021_01_07_425794	33	22	these	these	DT
10_1101-2021_01_07_425794	33	23	differences	difference	NNS
10_1101-2021_01_07_425794	33	24	in	in	IN
10_1101-2021_01_07_425794	33	25	annotations	annotation	NNS
10_1101-2021_01_07_425794	33	26	impact	impact	VBP
10_1101-2021_01_07_425794	33	27	the	the	DT
10_1101-2021_01_07_425794	33	28	gene-	gene-	JJ
10_1101-2021_01_07_425794	33	29	level	level	NN
10_1101-2021_01_07_425794	33	30	expression	expression	NN
10_1101-2021_01_07_425794	33	31	quantification	quantification	NN
10_1101-2021_01_07_425794	33	32	.	.	.
10_1101-2021_01_07_425794	34	1	In	in	IN
10_1101-2021_01_07_425794	34	2	this	this	DT
10_1101-2021_01_07_425794	34	3	study	study	NN
10_1101-2021_01_07_425794	34	4	,	,	,
10_1101-2021_01_07_425794	34	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	34	6	compared	compare	VBD
10_1101-2021_01_07_425794	34	7	three	three	CD
10_1101-2021_01_07_425794	34	8	human	human	JJ
10_1101-2021_01_07_425794	34	9	gene	gene	NN
10_1101-2021_01_07_425794	34	10	annotations	annotation	NNS
10_1101-2021_01_07_425794	34	11	,	,	,
10_1101-2021_01_07_425794	34	12	including	include	VBG
10_1101-2021_01_07_425794	34	13	a	a	DT
10_1101-2021_01_07_425794	34	14	recent	recent	JJ
10_1101-2021_01_07_425794	34	15	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	34	16	annotation	annotation	NN
10_1101-2021_01_07_425794	34	17	(	(	-LRB-
10_1101-2021_01_07_425794	34	18	released	release	VBN
10_1101-2021_01_07_425794	34	19	in	in	IN
10_1101-2021_01_07_425794	34	20	April	April	NNP
10_1101-2021_01_07_425794	34	21	2020	2020	CD
10_1101-2021_01_07_425794	34	22	)	)	-RRB-
10_1101-2021_01_07_425794	34	23	,	,	,
10_1101-2021_01_07_425794	34	24	a	a	DT
10_1101-2021_01_07_425794	34	25	recent	recent	JJ
10_1101-2021_01_07_425794	34	26	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	34	27	annotation	annotation	NN
10_1101-2021_01_07_425794	34	28	(	(	-LRB-
10_1101-2021_01_07_425794	34	29	released	release	VBN
10_1101-2021_01_07_425794	34	30	in	in	IN
10_1101-2021_01_07_425794	34	31	August	August	NNP
10_1101-2021_01_07_425794	34	32	2020	2020	CD
10_1101-2021_01_07_425794	34	33	)	)	-RRB-
10_1101-2021_01_07_425794	34	34	and	and	CC
10_1101-2021_01_07_425794	34	35	an	an	DT
10_1101-2021_01_07_425794	34	36	old	old	JJ
10_1101-2021_01_07_425794	34	37	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	34	38	annotation	annotation	NN
10_1101-2021_01_07_425794	34	39	(	(	-LRB-
10_1101-2021_01_07_425794	34	40	released	release	VBN
10_1101-2021_01_07_425794	34	41	in	in	IN
10_1101-2021_01_07_425794	34	42	April	April	NNP
10_1101-2021_01_07_425794	34	43	2015	2015	CD
10_1101-2021_01_07_425794	34	44	)	)	-RRB-
10_1101-2021_01_07_425794	34	45	,	,	,
10_1101-2021_01_07_425794	34	46	to	to	TO
10_1101-2021_01_07_425794	34	47	understand	understand	VB
10_1101-2021_01_07_425794	34	48	their	-PRON-	PRP$
10_1101-2021_01_07_425794	34	49	impact	impact	NN
10_1101-2021_01_07_425794	34	50	on	on	IN
10_1101-2021_01_07_425794	34	51	gene	gene	NN
10_1101-2021_01_07_425794	34	52	-	-	HYPH
10_1101-2021_01_07_425794	34	53	level	level	NN
10_1101-2021_01_07_425794	34	54	expression	expression	NN
10_1101-2021_01_07_425794	34	55	quantification	quantification	NN
10_1101-2021_01_07_425794	34	56	in	in	IN
10_1101-2021_01_07_425794	34	57	an	an	DT
10_1101-2021_01_07_425794	34	58	RNA	RNA	NNP
10_1101-2021_01_07_425794	34	59	-	-	HYPH
10_1101-2021_01_07_425794	34	60	seq	seq	NN
10_1101-2021_01_07_425794	34	61	data	datum	NNS
10_1101-2021_01_07_425794	34	62	analysis	analysis	NN
10_1101-2021_01_07_425794	34	63	pipeline	pipeline	NN
10_1101-2021_01_07_425794	34	64	.	.	.
10_1101-2021_01_07_425794	35	1	Although	although	IN
10_1101-2021_01_07_425794	35	2	the	the	DT
10_1101-2021_01_07_425794	35	3	old	old	JJ
10_1101-2021_01_07_425794	35	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	35	5	annotation	annotation	NN
10_1101-2021_01_07_425794	35	6	is	be	VBZ
10_1101-2021_01_07_425794	35	7	not	not	RB
10_1101-2021_01_07_425794	35	8	available	available	JJ
10_1101-2021_01_07_425794	35	9	at	at	IN
10_1101-2021_01_07_425794	35	10	the	the	DT
10_1101-2021_01_07_425794	35	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	35	12	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	35	13	database	database	NN
10_1101-2021_01_07_425794	35	14	anymore	anymore	RB
10_1101-2021_01_07_425794	35	15	,	,	,
10_1101-2021_01_07_425794	35	16	it	-PRON-	PRP
10_1101-2021_01_07_425794	35	17	has	have	VBZ
10_1101-2021_01_07_425794	35	18	been	be	VBN
10_1101-2021_01_07_425794	35	19	included	include	VBN
10_1101-2021_01_07_425794	35	20	as	as	IN
10_1101-2021_01_07_425794	35	21	part	part	NN
10_1101-2021_01_07_425794	35	22	of	of	IN
10_1101-2021_01_07_425794	35	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	35	24	,	,	,
10_1101-2021_01_07_425794	35	25	a	a	DT
10_1101-2021_01_07_425794	35	26	popular	popular	JJ
10_1101-2021_01_07_425794	35	27	RNA	RNA	NNP
10_1101-2021_01_07_425794	35	28	-	-	HYPH
10_1101-2021_01_07_425794	35	29	seq	seq	NN
10_1101-2021_01_07_425794	35	30	quantification	quantification	NN
10_1101-2021_01_07_425794	35	31	toolkit	toolkit	NNS
10_1101-2021_01_07_425794	35	32	,	,	,
10_1101-2021_01_07_425794	35	33	for	for	IN
10_1101-2021_01_07_425794	35	34	quantifying	quantify	VBG
10_1101-2021_01_07_425794	35	35	human	human	JJ
10_1101-2021_01_07_425794	35	36	RNA	RNA	NNP
10_1101-2021_01_07_425794	35	37	-	-	HYPH
10_1101-2021_01_07_425794	35	38	seq	seq	NN
10_1101-2021_01_07_425794	35	39	data	datum	NNS
10_1101-2021_01_07_425794	35	40	.	.	.
10_1101-2021_01_07_425794	36	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	36	2	used	use	VBD
10_1101-2021_01_07_425794	36	3	a	a	DT
10_1101-2021_01_07_425794	36	4	benchmark	benchmark	JJ
10_1101-2021_01_07_425794	36	5	RNA	RNA	NNP
10_1101-2021_01_07_425794	36	6	-	-	HYPH
10_1101-2021_01_07_425794	36	7	seq	seq	NN
10_1101-2021_01_07_425794	36	8	dataset	dataset	NN
10_1101-2021_01_07_425794	36	9	generated	generate	VBN
10_1101-2021_01_07_425794	36	10	by	by	IN
10_1101-2021_01_07_425794	36	11	the	the	DT
10_1101-2021_01_07_425794	36	12	SEquencing	SEquencing	NNP
10_1101-2021_01_07_425794	36	13	Quality	Quality	NNP
10_1101-2021_01_07_425794	36	14	Control	Control	NNP
10_1101-2021_01_07_425794	36	15	(	(	-LRB-
10_1101-2021_01_07_425794	36	16	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	36	17	/	/	SYM
10_1101-2021_01_07_425794	36	18	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	36	19	III	III	NNP
10_1101-2021_01_07_425794	36	20	)	)	-RRB-
10_1101-2021_01_07_425794	36	21	consortium	consortium	NN
10_1101-2021_01_07_425794	36	22	for	for	IN
10_1101-2021_01_07_425794	36	23	this	this	DT
10_1101-2021_01_07_425794	36	24	evaluation	evaluation	NN
10_1101-2021_01_07_425794	36	25	.	.	.
10_1101-2021_01_07_425794	37	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	37	2	show	show	VBP
10_1101-2021_01_07_425794	37	3	that	that	IN
10_1101-2021_01_07_425794	37	4	the	the	DT
10_1101-2021_01_07_425794	37	5	use	use	NN
10_1101-2021_01_07_425794	37	6	of	of	IN
10_1101-2021_01_07_425794	37	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	37	8	gene	gene	NN
10_1101-2021_01_07_425794	37	9	annotations	annotation	NNS
10_1101-2021_01_07_425794	37	10	led	lead	VBD
10_1101-2021_01_07_425794	37	11	to	to	IN
10_1101-2021_01_07_425794	37	12	better	well	JJR
10_1101-2021_01_07_425794	37	13	quantification	quantification	NN
10_1101-2021_01_07_425794	37	14	accuracy	accuracy	NN
10_1101-2021_01_07_425794	37	15	than	than	IN
10_1101-2021_01_07_425794	37	16	the	the	DT
10_1101-2021_01_07_425794	37	17	use	use	NN
10_1101-2021_01_07_425794	37	18	of	of	IN
10_1101-2021_01_07_425794	37	19	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	37	20	annotation	annotation	NN
10_1101-2021_01_07_425794	37	21	,	,	,
10_1101-2021_01_07_425794	37	22	based	base	VBN
10_1101-2021_01_07_425794	37	23	on	on	IN
10_1101-2021_01_07_425794	37	24	the	the	DT
10_1101-2021_01_07_425794	37	25	correlation	correlation	NN
10_1101-2021_01_07_425794	37	26	with	with	IN
10_1101-2021_01_07_425794	37	27	ground	ground	NN
10_1101-2021_01_07_425794	37	28	truths	truth	NNS
10_1101-2021_01_07_425794	37	29	including	include	VBG
10_1101-2021_01_07_425794	37	30	expression	expression	NN
10_1101-2021_01_07_425794	37	31	data	datum	NNS
10_1101-2021_01_07_425794	37	32	from	from	IN
10_1101-2021_01_07_425794	37	33	>	>	XX
10_1101-2021_01_07_425794	37	34	800	800	CD
10_1101-2021_01_07_425794	37	35	real	real	JJ
10_1101-2021_01_07_425794	37	36	-	-	HYPH
10_1101-2021_01_07_425794	37	37	time	time	NN
10_1101-2021_01_07_425794	37	38	PCR	PCR	NNP
10_1101-2021_01_07_425794	37	39	validated	validate	VBN
10_1101-2021_01_07_425794	37	40	genes	gene	NNS
10_1101-2021_01_07_425794	37	41	,	,	,
10_1101-2021_01_07_425794	37	42	known	know	VBN
10_1101-2021_01_07_425794	37	43	genome	genome	NN
10_1101-2021_01_07_425794	37	44	-	-	HYPH
10_1101-2021_01_07_425794	37	45	wide	wide	JJ
10_1101-2021_01_07_425794	37	46	titration	titration	NN
10_1101-2021_01_07_425794	37	47	ratios	ratio	NNS
10_1101-2021_01_07_425794	37	48	of	of	IN
10_1101-2021_01_07_425794	37	49	gene	gene	NN
10_1101-2021_01_07_425794	37	50	expression	expression	NN
10_1101-2021_01_07_425794	37	51	and	and	CC
10_1101-2021_01_07_425794	37	52	microarray	microarray	NNP
10_1101-2021_01_07_425794	37	53	gene	gene	NN
10_1101-2021_01_07_425794	37	54	expression	expression	NN
10_1101-2021_01_07_425794	37	55	data	datum	NNS
10_1101-2021_01_07_425794	37	56	.	.	.
10_1101-2021_01_07_425794	38	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	38	2	also	also	RB
10_1101-2021_01_07_425794	38	3	show	show	VBP
10_1101-2021_01_07_425794	38	4	that	that	IN
10_1101-2021_01_07_425794	38	5	the	the	DT
10_1101-2021_01_07_425794	38	6	older	old	JJR
10_1101-2021_01_07_425794	38	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	38	8	annotation	annotation	NN
10_1101-2021_01_07_425794	38	9	yielded	yield	VBD
10_1101-2021_01_07_425794	38	10	higher	high	JJR
10_1101-2021_01_07_425794	38	11	quantification	quantification	NN
10_1101-2021_01_07_425794	38	12	accuracy	accuracy	NN
10_1101-2021_01_07_425794	38	13	than	than	IN
10_1101-2021_01_07_425794	38	14	the	the	DT
10_1101-2021_01_07_425794	38	15	recent	recent	JJ
10_1101-2021_01_07_425794	38	16	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	38	17	annotation	annotation	NN
10_1101-2021_01_07_425794	38	18	in	in	IN
10_1101-2021_01_07_425794	38	19	our	-PRON-	PRP$
10_1101-2021_01_07_425794	38	20	evaluations	evaluation	NNS
10_1101-2021_01_07_425794	38	21	,	,	,
10_1101-2021_01_07_425794	38	22	suggesting	suggest	VBG
10_1101-2021_01_07_425794	38	23	that	that	IN
10_1101-2021_01_07_425794	38	24	the	the	DT
10_1101-2021_01_07_425794	38	25	recent	recent	JJ
10_1101-2021_01_07_425794	38	26	expansion	expansion	NN
10_1101-2021_01_07_425794	38	27	and	and	CC
10_1101-2021_01_07_425794	38	28	changes	change	NNS
10_1101-2021_01_07_425794	38	29	made	make	VBN
10_1101-2021_01_07_425794	38	30	to	to	IN
10_1101-2021_01_07_425794	38	31	the	the	DT
10_1101-2021_01_07_425794	38	32	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	38	33	annotation	annotation	NN
10_1101-2021_01_07_425794	38	34	have	have	VBP
10_1101-2021_01_07_425794	38	35	led	lead	VBN
10_1101-2021_01_07_425794	38	36	to	to	IN
10_1101-2021_01_07_425794	38	37	a	a	DT
10_1101-2021_01_07_425794	38	38	decline	decline	NN
10_1101-2021_01_07_425794	38	39	in	in	IN
10_1101-2021_01_07_425794	38	40	annotation	annotation	NN
10_1101-2021_01_07_425794	38	41	accuracy	accuracy	NN
10_1101-2021_01_07_425794	38	42	resulting	result	VBG
10_1101-2021_01_07_425794	38	43	in	in	IN
10_1101-2021_01_07_425794	38	44	less	less	RBR
10_1101-2021_01_07_425794	38	45	accurate	accurate	JJ
10_1101-2021_01_07_425794	38	46	quantification	quantification	NN
10_1101-2021_01_07_425794	38	47	result	result	NN
10_1101-2021_01_07_425794	38	48	.	.	.
10_1101-2021_01_07_425794	39	1	Furthermore	furthermore	RB
10_1101-2021_01_07_425794	39	2	,	,	,
10_1101-2021_01_07_425794	39	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	39	4	investigated	investigate	VBD
10_1101-2021_01_07_425794	39	5	if	if	IN
10_1101-2021_01_07_425794	39	6	any	any	DT
10_1101-2021_01_07_425794	39	7	normalization	normalization	NN
10_1101-2021_01_07_425794	39	8	method	method	NN
10_1101-2021_01_07_425794	39	9	can	can	MD
10_1101-2021_01_07_425794	39	10	mitigate	mitigate	VB
10_1101-2021_01_07_425794	39	11	the	the	DT
10_1101-2021_01_07_425794	39	12	differences	difference	NNS
10_1101-2021_01_07_425794	39	13	in	in	IN
10_1101-2021_01_07_425794	39	14	quantification	quantification	NN
10_1101-2021_01_07_425794	39	15	results	result	NNS
10_1101-2021_01_07_425794	39	16	caused	cause	VBN
10_1101-2021_01_07_425794	39	17	by	by	IN
10_1101-2021_01_07_425794	39	18	the	the	DT
10_1101-2021_01_07_425794	39	19	annotation	annotation	NN
10_1101-2021_01_07_425794	39	20	differences	difference	NNS
10_1101-2021_01_07_425794	39	21	.	.	.
10_1101-2021_01_07_425794	40	1	Our	-PRON-	PRP$
10_1101-2021_01_07_425794	40	2	results	result	NNS
10_1101-2021_01_07_425794	40	3	show	show	VBP
10_1101-2021_01_07_425794	40	4	that	that	IN
10_1101-2021_01_07_425794	40	5	the	the	DT
10_1101-2021_01_07_425794	40	6	quantification	quantification	NN
10_1101-2021_01_07_425794	40	7	differences	difference	NNS
10_1101-2021_01_07_425794	40	8	remained	remain	VBD
10_1101-2021_01_07_425794	40	9	almost	almost	RB
10_1101-2021_01_07_425794	40	10	the	the	DT
10_1101-2021_01_07_425794	40	11	same	same	JJ
10_1101-2021_01_07_425794	40	12	no	no	RB
10_1101-2021_01_07_425794	40	13	matter	matter	RB
10_1101-2021_01_07_425794	40	14	how	how	WRB
10_1101-2021_01_07_425794	40	15	the	the	DT
10_1101-2021_01_07_425794	40	16	RNA	RNA	NNP
10_1101-2021_01_07_425794	40	17	-	-	HYPH
10_1101-2021_01_07_425794	40	18	seq	seq	NN
10_1101-2021_01_07_425794	40	19	data	datum	NNS
10_1101-2021_01_07_425794	40	20	were	be	VBD
10_1101-2021_01_07_425794	40	21	normalized	normalized	JJ
10_1101-2021_01_07_425794	40	22	.	.	.
10_1101-2021_01_07_425794	41	1	2	2	CD
10_1101-2021_01_07_425794	41	2	MATERIALS	material	NNS
10_1101-2021_01_07_425794	41	3	AND	and	CC
10_1101-2021_01_07_425794	41	4	METHODS	methods	JJ
10_1101-2021_01_07_425794	41	5	2.1	2.1	CD
10_1101-2021_01_07_425794	41	6	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	41	7	/	/	SYM
10_1101-2021_01_07_425794	41	8	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	41	9	data	datum	NNS
10_1101-2021_01_07_425794	41	10	The	the	DT
10_1101-2021_01_07_425794	41	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	41	12	-	-	HYPH
10_1101-2021_01_07_425794	41	13	seq	seq	NN
10_1101-2021_01_07_425794	41	14	data	datum	NNS
10_1101-2021_01_07_425794	41	15	used	use	VBN
10_1101-2021_01_07_425794	41	16	for	for	IN
10_1101-2021_01_07_425794	41	17	evaluation	evaluation	NN
10_1101-2021_01_07_425794	41	18	in	in	IN
10_1101-2021_01_07_425794	41	19	this	this	DT
10_1101-2021_01_07_425794	41	20	study	study	NN
10_1101-2021_01_07_425794	41	21	are	be	VBP
10_1101-2021_01_07_425794	41	22	a	a	DT
10_1101-2021_01_07_425794	41	23	benchmark	benchmark	JJ
10_1101-2021_01_07_425794	41	24	dataset	dataset	NN
10_1101-2021_01_07_425794	41	25	generated	generate	VBN
10_1101-2021_01_07_425794	41	26	by	by	IN
10_1101-2021_01_07_425794	41	27	the	the	DT
10_1101-2021_01_07_425794	41	28	Sequencing	Sequencing	NNP
10_1101-2021_01_07_425794	41	29	Quality	Quality	NNP
10_1101-2021_01_07_425794	41	30	Control	Control	NNP
10_1101-2021_01_07_425794	41	31	(	(	-LRB-
10_1101-2021_01_07_425794	41	32	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	41	33	)	)	-RRB-
10_1101-2021_01_07_425794	41	34	project	project	NN
10_1101-2021_01_07_425794	41	35	[	[	-LRB-
10_1101-2021_01_07_425794	41	36	1	1	CD
10_1101-2021_01_07_425794	41	37	]	]	-RRB-
10_1101-2021_01_07_425794	41	38	,	,	,
10_1101-2021_01_07_425794	41	39	the	the	DT
10_1101-2021_01_07_425794	41	40	third	third	JJ
10_1101-2021_01_07_425794	41	41	stage	stage	NN
10_1101-2021_01_07_425794	41	42	of	of	IN
10_1101-2021_01_07_425794	41	43	the	the	DT
10_1101-2021_01_07_425794	41	44	MicroArray	MicroArray	NNP
10_1101-2021_01_07_425794	41	45	Quality	Quality	NNP
10_1101-2021_01_07_425794	41	46	Control	Control	NNP
10_1101-2021_01_07_425794	41	47	(	(	-LRB-
10_1101-2021_01_07_425794	41	48	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	41	49	)	)	-RRB-
10_1101-2021_01_07_425794	41	50	study	study	NN
10_1101-2021_01_07_425794	41	51	[	[	-LRB-
10_1101-2021_01_07_425794	41	52	14	14	CD
10_1101-2021_01_07_425794	41	53	,	,	,
10_1101-2021_01_07_425794	41	54	15	15	CD
10_1101-2021_01_07_425794	41	55	]	]	-RRB-
10_1101-2021_01_07_425794	41	56	.	.	.
10_1101-2021_01_07_425794	42	1	The	the	DT
10_1101-2021_01_07_425794	42	2	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	42	3	dataset	dataset	NN
10_1101-2021_01_07_425794	42	4	includes	include	VBZ
10_1101-2021_01_07_425794	42	5	the	the	DT
10_1101-2021_01_07_425794	42	6	Universal	Universal	NNP
10_1101-2021_01_07_425794	42	7	3	3	CD
10_1101-2021_01_07_425794	42	8	.CC	.CC	:
10_1101-2021_01_07_425794	42	9	-	-	HYPH
10_1101-2021_01_07_425794	42	10	BY	by	IN
10_1101-2021_01_07_425794	42	11	-	-	HYPH
10_1101-2021_01_07_425794	42	12	NC	NC	NNP
10_1101-2021_01_07_425794	42	13	-	-	HYPH
10_1101-2021_01_07_425794	42	14	ND	ND	NNP
10_1101-2021_01_07_425794	42	15	4.0	4.0	CD
10_1101-2021_01_07_425794	42	16	International	international	JJ
10_1101-2021_01_07_425794	42	17	licensemade	licensemade	NN
10_1101-2021_01_07_425794	42	18	available	available	JJ
10_1101-2021_01_07_425794	42	19	under	under	IN
10_1101-2021_01_07_425794	42	20	a	a	DT
10_1101-2021_01_07_425794	42	21	(	(	-LRB-
10_1101-2021_01_07_425794	42	22	which	which	WDT
10_1101-2021_01_07_425794	42	23	was	be	VBD
10_1101-2021_01_07_425794	42	24	not	not	RB
10_1101-2021_01_07_425794	42	25	certified	certify	VBN
10_1101-2021_01_07_425794	42	26	by	by	IN
10_1101-2021_01_07_425794	42	27	peer	peer	NN
10_1101-2021_01_07_425794	42	28	review	review	NN
10_1101-2021_01_07_425794	42	29	)	)	-RRB-
10_1101-2021_01_07_425794	42	30	is	be	VBZ
10_1101-2021_01_07_425794	42	31	the	the	DT
10_1101-2021_01_07_425794	42	32	author	author	NN
10_1101-2021_01_07_425794	42	33	/	/	SYM
10_1101-2021_01_07_425794	42	34	funder	funder	NN
10_1101-2021_01_07_425794	42	35	,	,	,
10_1101-2021_01_07_425794	42	36	who	who	WP
10_1101-2021_01_07_425794	42	37	has	have	VBZ
10_1101-2021_01_07_425794	42	38	granted	grant	VBN
10_1101-2021_01_07_425794	42	39	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	42	40	a	a	DT
10_1101-2021_01_07_425794	42	41	license	license	NN
10_1101-2021_01_07_425794	42	42	to	to	TO
10_1101-2021_01_07_425794	42	43	display	display	VB
10_1101-2021_01_07_425794	42	44	the	the	DT
10_1101-2021_01_07_425794	42	45	preprint	preprint	NN
10_1101-2021_01_07_425794	42	46	in	in	IN
10_1101-2021_01_07_425794	42	47	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	42	48	.	.	.
10_1101-2021_01_07_425794	43	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	43	2	is	be	VBZ
10_1101-2021_01_07_425794	43	3	The	the	DT
10_1101-2021_01_07_425794	43	4	copyright	copyright	NN
10_1101-2021_01_07_425794	43	5	holder	holder	NN
10_1101-2021_01_07_425794	43	6	for	for	IN
10_1101-2021_01_07_425794	43	7	this	this	DT
10_1101-2021_01_07_425794	43	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	43	9	version	version	NN
10_1101-2021_01_07_425794	43	10	posted	post	VBD
10_1101-2021_01_07_425794	43	11	January	January	NNP
10_1101-2021_01_07_425794	43	12	8	8	CD
10_1101-2021_01_07_425794	43	13	,	,	,
10_1101-2021_01_07_425794	43	14	2021	2021	CD
10_1101-2021_01_07_425794	43	15	.	.	.
10_1101-2021_01_07_425794	43	16	;	;	:
10_1101-2021_01_07_425794	43	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	43	18	:	:	:
10_1101-2021_01_07_425794	43	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	43	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	43	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	43	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NNP
10_1101-2021_01_07_425794	43	23	Human	Human	NNP
10_1101-2021_01_07_425794	43	24	Reference	Reference	NNP
10_1101-2021_01_07_425794	43	25	RNA	RNA	NNP
10_1101-2021_01_07_425794	43	26	(	(	-LRB-
10_1101-2021_01_07_425794	43	27	UHRR	UHRR	NNP
10_1101-2021_01_07_425794	43	28	)	)	-RRB-
10_1101-2021_01_07_425794	43	29	as	as	IN
10_1101-2021_01_07_425794	43	30	sample	sample	NN
10_1101-2021_01_07_425794	43	31	A	A	NNP
10_1101-2021_01_07_425794	43	32	and	and	CC
10_1101-2021_01_07_425794	43	33	the	the	DT
10_1101-2021_01_07_425794	43	34	Human	Human	NNP
10_1101-2021_01_07_425794	43	35	Brain	Brain	NNP
10_1101-2021_01_07_425794	43	36	Reference	Reference	NNP
10_1101-2021_01_07_425794	43	37	RNA	RNA	NNP
10_1101-2021_01_07_425794	43	38	(	(	-LRB-
10_1101-2021_01_07_425794	43	39	HBRR	HBRR	NNP
10_1101-2021_01_07_425794	43	40	)	)	-RRB-
10_1101-2021_01_07_425794	43	41	as	as	IN
10_1101-2021_01_07_425794	43	42	sample	sample	NNP
10_1101-2021_01_07_425794	43	43	B.	B.	NNP
10_1101-2021_01_07_425794	44	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	44	2	also	also	RB
10_1101-2021_01_07_425794	44	3	includes	include	VBZ
10_1101-2021_01_07_425794	44	4	two	two	CD
10_1101-2021_01_07_425794	44	5	other	other	JJ
10_1101-2021_01_07_425794	44	6	samples	sample	NNS
10_1101-2021_01_07_425794	44	7	C	c	NN
10_1101-2021_01_07_425794	44	8	and	and	CC
10_1101-2021_01_07_425794	44	9	D	d	NN
10_1101-2021_01_07_425794	44	10	,	,	,
10_1101-2021_01_07_425794	44	11	which	which	WDT
10_1101-2021_01_07_425794	44	12	are	be	VBP
10_1101-2021_01_07_425794	44	13	combination	combination	NN
10_1101-2021_01_07_425794	44	14	of	of	IN
10_1101-2021_01_07_425794	44	15	A	a	NN
10_1101-2021_01_07_425794	44	16	and	and	CC
10_1101-2021_01_07_425794	44	17	B	b	NN
10_1101-2021_01_07_425794	44	18	mixed	mix	VBN
10_1101-2021_01_07_425794	44	19	in	in	IN
10_1101-2021_01_07_425794	44	20	the	the	DT
10_1101-2021_01_07_425794	44	21	ratios	ratio	NNS
10_1101-2021_01_07_425794	44	22	of	of	IN
10_1101-2021_01_07_425794	44	23	3:1	3:1	CD
10_1101-2021_01_07_425794	44	24	in	in	IN
10_1101-2021_01_07_425794	44	25	C	C	NNP
10_1101-2021_01_07_425794	44	26	and	and	CC
10_1101-2021_01_07_425794	44	27	1:3	1:3	CD
10_1101-2021_01_07_425794	44	28	in	in	IN
10_1101-2021_01_07_425794	44	29	D	d	NN
10_1101-2021_01_07_425794	44	30	respectively	respectively	RB
10_1101-2021_01_07_425794	44	31	.	.	.
10_1101-2021_01_07_425794	45	1	The	the	DT
10_1101-2021_01_07_425794	45	2	samples	sample	NNS
10_1101-2021_01_07_425794	45	3	were	be	VBD
10_1101-2021_01_07_425794	45	4	sequenced	sequence	VBN
10_1101-2021_01_07_425794	45	5	in	in	IN
10_1101-2021_01_07_425794	45	6	four	four	CD
10_1101-2021_01_07_425794	45	7	replicate	replicate	NN
10_1101-2021_01_07_425794	45	8	paired	pair	VBN
10_1101-2021_01_07_425794	45	9	-	-	HYPH
10_1101-2021_01_07_425794	45	10	end	end	NN
10_1101-2021_01_07_425794	45	11	libraries	library	NNS
10_1101-2021_01_07_425794	45	12	using	use	VBG
10_1101-2021_01_07_425794	45	13	an	an	DT
10_1101-2021_01_07_425794	45	14	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	45	15	HiSeq	HiSeq	NNP
10_1101-2021_01_07_425794	45	16	2000	2000	CD
10_1101-2021_01_07_425794	45	17	sequencer	sequencer	NN
10_1101-2021_01_07_425794	45	18	at	at	IN
10_1101-2021_01_07_425794	45	19	the	the	DT
10_1101-2021_01_07_425794	45	20	Australian	Australian	NNP
10_1101-2021_01_07_425794	45	21	Genomics	Genomics	NNP
10_1101-2021_01_07_425794	45	22	Research	Research	NNP
10_1101-2021_01_07_425794	45	23	Facility	Facility	NNP
10_1101-2021_01_07_425794	45	24	(	(	-LRB-
10_1101-2021_01_07_425794	45	25	AGRF	AGRF	NNP
10_1101-2021_01_07_425794	45	26	)	)	-RRB-
10_1101-2021_01_07_425794	45	27	.	.	.
10_1101-2021_01_07_425794	46	1	Each	each	DT
10_1101-2021_01_07_425794	46	2	library	library	NN
10_1101-2021_01_07_425794	46	3	contains	contain	VBZ
10_1101-2021_01_07_425794	46	4	∼20	∼20	NNP
10_1101-2021_01_07_425794	46	5	million	million	CD
10_1101-2021_01_07_425794	46	6	100bp	100bp	NNP
10_1101-2021_01_07_425794	46	7	read	read	VB
10_1101-2021_01_07_425794	46	8	pairs	pair	NNS
10_1101-2021_01_07_425794	46	9	.	.	.
10_1101-2021_01_07_425794	47	1	A	a	DT
10_1101-2021_01_07_425794	47	2	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	47	3	real	real	JJ
10_1101-2021_01_07_425794	47	4	-	-	HYPH
10_1101-2021_01_07_425794	47	5	time	time	NN
10_1101-2021_01_07_425794	47	6	polymerase	polymerase	NN
10_1101-2021_01_07_425794	47	7	chain	chain	NN
10_1101-2021_01_07_425794	47	8	reaction	reaction	NN
10_1101-2021_01_07_425794	47	9	(	(	-LRB-
10_1101-2021_01_07_425794	47	10	RT	RT	NNP
10_1101-2021_01_07_425794	47	11	-	-	HYPH
10_1101-2021_01_07_425794	47	12	PCR	PCR	NNP
10_1101-2021_01_07_425794	47	13	)	)	-RRB-
10_1101-2021_01_07_425794	47	14	dataset	dataset	VBD
10_1101-2021_01_07_425794	47	15	with	with	IN
10_1101-2021_01_07_425794	47	16	expression	expression	NN
10_1101-2021_01_07_425794	47	17	values	value	NNS
10_1101-2021_01_07_425794	47	18	measured	measure	VBN
10_1101-2021_01_07_425794	47	19	for	for	IN
10_1101-2021_01_07_425794	47	20	over	over	IN
10_1101-2021_01_07_425794	47	21	1,000	1,000	CD
10_1101-2021_01_07_425794	47	22	genes	gene	NNS
10_1101-2021_01_07_425794	47	23	,	,	,
10_1101-2021_01_07_425794	47	24	which	which	WDT
10_1101-2021_01_07_425794	47	25	was	be	VBD
10_1101-2021_01_07_425794	47	26	generated	generate	VBN
10_1101-2021_01_07_425794	47	27	in	in	IN
10_1101-2021_01_07_425794	47	28	the	the	DT
10_1101-2021_01_07_425794	47	29	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	47	30	-	-	,
10_1101-2021_01_07_425794	47	31	I	-PRON-	PRP
10_1101-2021_01_07_425794	47	32	study	study	VBP
10_1101-2021_01_07_425794	47	33	[	[	-LRB-
10_1101-2021_01_07_425794	47	34	15	15	CD
10_1101-2021_01_07_425794	47	35	]	]	-RRB-
10_1101-2021_01_07_425794	47	36	,	,	,
10_1101-2021_01_07_425794	47	37	was	be	VBD
10_1101-2021_01_07_425794	47	38	used	use	VBN
10_1101-2021_01_07_425794	47	39	to	to	TO
10_1101-2021_01_07_425794	47	40	validate	validate	VB
10_1101-2021_01_07_425794	47	41	the	the	DT
10_1101-2021_01_07_425794	47	42	expression	expression	NN
10_1101-2021_01_07_425794	47	43	of	of	IN
10_1101-2021_01_07_425794	47	44	the	the	DT
10_1101-2021_01_07_425794	47	45	RNA	RNA	NNP
10_1101-2021_01_07_425794	47	46	-	-	HYPH
10_1101-2021_01_07_425794	47	47	seq	seq	NN
10_1101-2021_01_07_425794	47	48	data	datum	NNS
10_1101-2021_01_07_425794	47	49	in	in	IN
10_1101-2021_01_07_425794	47	50	this	this	DT
10_1101-2021_01_07_425794	47	51	study	study	NN
10_1101-2021_01_07_425794	47	52	.	.	.
10_1101-2021_01_07_425794	48	1	The	the	DT
10_1101-2021_01_07_425794	48	2	expression	expression	NN
10_1101-2021_01_07_425794	48	3	values	value	NNS
10_1101-2021_01_07_425794	48	4	were	be	VBD
10_1101-2021_01_07_425794	48	5	measured	measure	VBN
10_1101-2021_01_07_425794	48	6	for	for	IN
10_1101-2021_01_07_425794	48	7	both	both	CC
10_1101-2021_01_07_425794	48	8	the	the	DT
10_1101-2021_01_07_425794	48	9	UHRR	UHRR	NNP
10_1101-2021_01_07_425794	48	10	and	and	CC
10_1101-2021_01_07_425794	48	11	HBRR	HBRR	NNP
10_1101-2021_01_07_425794	48	12	samples	sample	NNS
10_1101-2021_01_07_425794	48	13	together	together	RB
10_1101-2021_01_07_425794	48	14	with	with	IN
10_1101-2021_01_07_425794	48	15	their	-PRON-	PRP$
10_1101-2021_01_07_425794	48	16	respec-	respec-	NN
10_1101-2021_01_07_425794	48	17	tive	tive	JJ
10_1101-2021_01_07_425794	48	18	combinations	combination	NNS
10_1101-2021_01_07_425794	48	19	.	.	.
10_1101-2021_01_07_425794	49	1	Around	around	IN
10_1101-2021_01_07_425794	49	2	800–900	800–900	CD
10_1101-2021_01_07_425794	49	3	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	49	4	RT	RT	NNP
10_1101-2021_01_07_425794	49	5	-	-	HYPH
10_1101-2021_01_07_425794	49	6	PCR	PCR	NNP
10_1101-2021_01_07_425794	49	7	genes	gene	NNS
10_1101-2021_01_07_425794	49	8	,	,	,
10_1101-2021_01_07_425794	49	9	which	which	WDT
10_1101-2021_01_07_425794	49	10	had	have	VBD
10_1101-2021_01_07_425794	49	11	matching	match	VBG
10_1101-2021_01_07_425794	49	12	gene	gene	NN
10_1101-2021_01_07_425794	49	13	identifiers	identifier	NNS
10_1101-2021_01_07_425794	49	14	with	with	IN
10_1101-2021_01_07_425794	49	15	expressed	express	VBN
10_1101-2021_01_07_425794	49	16	RNA	RNA	NNP
10_1101-2021_01_07_425794	49	17	-	-	HYPH
10_1101-2021_01_07_425794	49	18	seq	seq	NN
10_1101-2021_01_07_425794	49	19	genes	gene	NNS
10_1101-2021_01_07_425794	49	20	from	from	IN
10_1101-2021_01_07_425794	49	21	different	different	JJ
10_1101-2021_01_07_425794	49	22	annotations	annotation	NNS
10_1101-2021_01_07_425794	49	23	,	,	,
10_1101-2021_01_07_425794	49	24	were	be	VBD
10_1101-2021_01_07_425794	49	25	included	include	VBN
10_1101-2021_01_07_425794	49	26	for	for	IN
10_1101-2021_01_07_425794	49	27	assessing	assess	VBG
10_1101-2021_01_07_425794	49	28	the	the	DT
10_1101-2021_01_07_425794	49	29	accuracy	accuracy	NN
10_1101-2021_01_07_425794	49	30	of	of	IN
10_1101-2021_01_07_425794	49	31	RNA	RNA	NNP
10_1101-2021_01_07_425794	49	32	-	-	HYPH
10_1101-2021_01_07_425794	49	33	seq	seq	NN
10_1101-2021_01_07_425794	49	34	quantification	quantification	NN
10_1101-2021_01_07_425794	49	35	.	.	.
10_1101-2021_01_07_425794	50	1	In	in	IN
10_1101-2021_01_07_425794	50	2	addition	addition	NN
10_1101-2021_01_07_425794	50	3	,	,	,
10_1101-2021_01_07_425794	50	4	microarray	microarray	JJ
10_1101-2021_01_07_425794	50	5	data	datum	NNS
10_1101-2021_01_07_425794	50	6	generated	generate	VBN
10_1101-2021_01_07_425794	50	7	in	in	IN
10_1101-2021_01_07_425794	50	8	the	the	DT
10_1101-2021_01_07_425794	50	9	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	50	10	-	-	:
10_1101-2021_01_07_425794	50	11	I	-PRON-	PRP
10_1101-2021_01_07_425794	50	12	study	study	VBP
10_1101-2021_01_07_425794	50	13	with	with	IN
10_1101-2021_01_07_425794	50	14	samples	sample	NNS
10_1101-2021_01_07_425794	50	15	A	A	NNP
10_1101-2021_01_07_425794	50	16	to	to	IN
10_1101-2021_01_07_425794	50	17	D	d	NN
10_1101-2021_01_07_425794	50	18	hybridized	hybridize	VBN
10_1101-2021_01_07_425794	50	19	to	to	IN
10_1101-2021_01_07_425794	50	20	the	the	DT
10_1101-2021_01_07_425794	50	21	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	50	22	Human-6	Human-6	NNP
10_1101-2021_01_07_425794	50	23	Bead-	Bead-	NNP
10_1101-2021_01_07_425794	50	24	Chip	Chip	NNP
10_1101-2021_01_07_425794	50	25	microarrays	microarray	NNS
10_1101-2021_01_07_425794	50	26	were	be	VBD
10_1101-2021_01_07_425794	50	27	also	also	RB
10_1101-2021_01_07_425794	50	28	used	use	VBN
10_1101-2021_01_07_425794	50	29	in	in	IN
10_1101-2021_01_07_425794	50	30	the	the	DT
10_1101-2021_01_07_425794	50	31	assessment	assessment	NN
10_1101-2021_01_07_425794	50	32	.	.	.
10_1101-2021_01_07_425794	51	1	The	the	DT
10_1101-2021_01_07_425794	51	2	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	51	3	RT	RT	NNP
10_1101-2021_01_07_425794	51	4	-	-	HYPH
10_1101-2021_01_07_425794	51	5	PCR	PCR	NNP
10_1101-2021_01_07_425794	51	6	and	and	CC
10_1101-2021_01_07_425794	51	7	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	51	8	microarray	microarray	JJ
10_1101-2021_01_07_425794	51	9	datasets	dataset	NNS
10_1101-2021_01_07_425794	51	10	are	be	VBP
10_1101-2021_01_07_425794	51	11	available	available	JJ
10_1101-2021_01_07_425794	51	12	as	as	IN
10_1101-2021_01_07_425794	51	13	part	part	NN
10_1101-2021_01_07_425794	51	14	of	of	IN
10_1101-2021_01_07_425794	51	15	the	the	DT
10_1101-2021_01_07_425794	51	16	Bioconductor	Bioconductor	NNP
10_1101-2021_01_07_425794	51	17	package	package	NN
10_1101-2021_01_07_425794	51	18	‘	'	``
10_1101-2021_01_07_425794	51	19	seqc	seqc	NN
10_1101-2021_01_07_425794	51	20	’	'	''
10_1101-2021_01_07_425794	51	21	[	[	-LRB-
10_1101-2021_01_07_425794	51	22	16	16	CD
10_1101-2021_01_07_425794	51	23	]	]	-RRB-
10_1101-2021_01_07_425794	51	24	.	.	.
10_1101-2021_01_07_425794	52	1	2.2	2.2	CD
10_1101-2021_01_07_425794	52	2	Annotations	Annotations	NNPS
10_1101-2021_01_07_425794	52	3	used	use	VBD
10_1101-2021_01_07_425794	52	4	Three	three	CD
10_1101-2021_01_07_425794	52	5	human	human	JJ
10_1101-2021_01_07_425794	52	6	gene	gene	NN
10_1101-2021_01_07_425794	52	7	annotations	annotation	NNS
10_1101-2021_01_07_425794	52	8	were	be	VBD
10_1101-2021_01_07_425794	52	9	included	include	VBN
10_1101-2021_01_07_425794	52	10	in	in	IN
10_1101-2021_01_07_425794	52	11	this	this	DT
10_1101-2021_01_07_425794	52	12	study	study	NN
10_1101-2021_01_07_425794	52	13	,	,	,
10_1101-2021_01_07_425794	52	14	including	include	VBG
10_1101-2021_01_07_425794	52	15	a	a	DT
10_1101-2021_01_07_425794	52	16	recent	recent	JJ
10_1101-2021_01_07_425794	52	17	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	52	18	annotation	annotation	NN
10_1101-2021_01_07_425794	52	19	,	,	,
10_1101-2021_01_07_425794	52	20	a	a	DT
10_1101-2021_01_07_425794	52	21	recent	recent	JJ
10_1101-2021_01_07_425794	52	22	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	52	23	annotation	annotation	NN
10_1101-2021_01_07_425794	52	24	and	and	CC
10_1101-2021_01_07_425794	52	25	an	an	DT
10_1101-2021_01_07_425794	52	26	old	old	JJ
10_1101-2021_01_07_425794	52	27	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	52	28	annotation	annotation	NN
10_1101-2021_01_07_425794	52	29	.	.	.
10_1101-2021_01_07_425794	53	1	All	all	PDT
10_1101-2021_01_07_425794	53	2	these	these	DT
10_1101-2021_01_07_425794	53	3	anno-	anno-	JJ
10_1101-2021_01_07_425794	53	4	tations	tation	NNS
10_1101-2021_01_07_425794	53	5	were	be	VBD
10_1101-2021_01_07_425794	53	6	generated	generate	VBN
10_1101-2021_01_07_425794	53	7	based	base	VBN
10_1101-2021_01_07_425794	53	8	on	on	IN
10_1101-2021_01_07_425794	53	9	the	the	DT
10_1101-2021_01_07_425794	53	10	human	human	JJ
10_1101-2021_01_07_425794	53	11	reference	reference	NN
10_1101-2021_01_07_425794	53	12	genome	genome	NNP
10_1101-2021_01_07_425794	53	13	GRCh38	GRCh38	NNP
10_1101-2021_01_07_425794	53	14	/	/	SYM
10_1101-2021_01_07_425794	53	15	hg38	hg38	NNP
10_1101-2021_01_07_425794	53	16	.	.	.
10_1101-2021_01_07_425794	54	1	The	the	DT
10_1101-2021_01_07_425794	54	2	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	54	3	gene	gene	NN
10_1101-2021_01_07_425794	54	4	annotation	annotation	NN
10_1101-2021_01_07_425794	54	5	used	use	VBN
10_1101-2021_01_07_425794	54	6	in	in	IN
10_1101-2021_01_07_425794	54	7	this	this	DT
10_1101-2021_01_07_425794	54	8	study	study	NN
10_1101-2021_01_07_425794	54	9	was	be	VBD
10_1101-2021_01_07_425794	54	10	generated	generate	VBN
10_1101-2021_01_07_425794	54	11	in	in	IN
10_1101-2021_01_07_425794	54	12	April	April	NNP
10_1101-2021_01_07_425794	54	13	2020	2020	CD
10_1101-2021_01_07_425794	54	14	.	.	.
10_1101-2021_01_07_425794	55	1	Its	-PRON-	PRP$
10_1101-2021_01_07_425794	55	2	ver-	ver-	JJ
10_1101-2021_01_07_425794	55	3	sion	sion	NN
10_1101-2021_01_07_425794	55	4	number	number	NN
10_1101-2021_01_07_425794	55	5	is	be	VBZ
10_1101-2021_01_07_425794	55	6	100	100	CD
10_1101-2021_01_07_425794	55	7	.	.	.
10_1101-2021_01_07_425794	56	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	56	2	was	be	VBD
10_1101-2021_01_07_425794	56	3	downloaded	download	VBN
10_1101-2021_01_07_425794	56	4	from	from	IN
10_1101-2021_01_07_425794	56	5	ftp://ftp.ensembl.org/pub/release-100/	ftp://ftp.ensembl.org/pub/release-100/	NNP
10_1101-2021_01_07_425794	56	6	gtf	gtf	NN
10_1101-2021_01_07_425794	56	7	/	/	SYM
10_1101-2021_01_07_425794	56	8	homo_sapiens	homo_sapien	NNS
10_1101-2021_01_07_425794	56	9	/	/	SYM
10_1101-2021_01_07_425794	56	10	Homo_sapiens	homo_sapien	NNS
10_1101-2021_01_07_425794	56	11	.	.	.
10_1101-2021_01_07_425794	56	12	GRCh38.100.gtf.gz	grch38.100.gtf.gz	ADD
10_1101-2021_01_07_425794	56	13	.	.	.
10_1101-2021_01_07_425794	57	1	The	the	DT
10_1101-2021_01_07_425794	57	2	recent	recent	JJ
10_1101-2021_01_07_425794	57	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	57	4	gene	gene	NN
10_1101-2021_01_07_425794	57	5	annotation	annotation	NN
10_1101-2021_01_07_425794	57	6	used	use	VBN
10_1101-2021_01_07_425794	57	7	was	be	VBD
10_1101-2021_01_07_425794	57	8	released	release	VBN
10_1101-2021_01_07_425794	57	9	by	by	IN
10_1101-2021_01_07_425794	57	10	the	the	DT
10_1101-2021_01_07_425794	57	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	57	12	in	in	IN
10_1101-2021_01_07_425794	57	13	August	August	NNP
10_1101-2021_01_07_425794	57	14	2020	2020	CD
10_1101-2021_01_07_425794	57	15	.	.	.
10_1101-2021_01_07_425794	58	1	Its	-PRON-	PRP$
10_1101-2021_01_07_425794	58	2	release	release	NN
10_1101-2021_01_07_425794	58	3	number	number	NN
10_1101-2021_01_07_425794	58	4	is	be	VBZ
10_1101-2021_01_07_425794	58	5	109.20200815	109.20200815	JJ
10_1101-2021_01_07_425794	58	6	and	and	CC
10_1101-2021_01_07_425794	58	7	it	-PRON-	PRP
10_1101-2021_01_07_425794	58	8	is	be	VBZ
10_1101-2021_01_07_425794	58	9	part	part	NN
10_1101-2021_01_07_425794	58	10	of	of	IN
10_1101-2021_01_07_425794	58	11	the	the	DT
10_1101-2021_01_07_425794	58	12	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	58	13	release	release	NN
10_1101-2021_01_07_425794	58	14	version	version	NN
10_1101-2021_01_07_425794	58	15	202	202	CD
10_1101-2021_01_07_425794	58	16	.	.	.
10_1101-2021_01_07_425794	59	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	59	2	was	be	VBD
10_1101-2021_01_07_425794	59	3	downloaded	download	VBN
10_1101-2021_01_07_425794	59	4	from	from	IN
10_1101-2021_01_07_425794	59	5	the	the	DT
10_1101-2021_01_07_425794	59	6	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	59	7	FTP	FTP	NNP
10_1101-2021_01_07_425794	59	8	site	site	NN
10_1101-2021_01_07_425794	59	9	ftp://ftp.ncbi.nlm.nih.gov/refseq/H	ftp://ftp.ncbi.nlm.nih.gov/refseq/H	NNP
10_1101-2021_01_07_425794	59	10	_	_	NNP
10_1101-2021_01_07_425794	59	11	sapiens	sapien	VBZ
10_1101-2021_01_07_425794	59	12	/	/	SYM
10_1101-2021_01_07_425794	59	13	annotation	annotation	NN
10_1101-2021_01_07_425794	59	14	/	/	SYM
10_1101-2021_01_07_425794	59	15	annotation_releases/109.20200815	annotation_releases/109.20200815	NNS
10_1101-2021_01_07_425794	59	16	/	/	SYM
10_1101-2021_01_07_425794	59	17	GCF_000001405.39_GRCh38	gcf_000001405.39_grch38	ADD
10_1101-2021_01_07_425794	59	18	.	.	.
10_1101-2021_01_07_425794	60	1	p13	p13	NNP
10_1101-2021_01_07_425794	60	2	/	/	SYM
10_1101-2021_01_07_425794	60	3	GCF_000001405.39_GRCh38.p13_genomic.gtf.gz	gcf_000001405.39_grch38.p13_genomic.gtf.gz	ADD
10_1101-2021_01_07_425794	60	4	.	.	.
10_1101-2021_01_07_425794	61	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	61	2	refer	refer	VBP
10_1101-2021_01_07_425794	61	3	this	this	DT
10_1101-2021_01_07_425794	61	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	61	5	annota-	annota-	JJ
10_1101-2021_01_07_425794	61	6	tion	tion	NN
10_1101-2021_01_07_425794	61	7	as	as	IN
10_1101-2021_01_07_425794	61	8	‘	'	``
10_1101-2021_01_07_425794	61	9	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	61	10	-	-	HYPH
10_1101-2021_01_07_425794	61	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	61	12	’	'	''
10_1101-2021_01_07_425794	61	13	in	in	IN
10_1101-2021_01_07_425794	61	14	this	this	DT
10_1101-2021_01_07_425794	61	15	study	study	NN
10_1101-2021_01_07_425794	61	16	.	.	.
10_1101-2021_01_07_425794	62	1	The	the	DT
10_1101-2021_01_07_425794	62	2	old	old	JJ
10_1101-2021_01_07_425794	62	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	62	4	annotation	annotation	NN
10_1101-2021_01_07_425794	62	5	included	include	VBN
10_1101-2021_01_07_425794	62	6	in	in	IN
10_1101-2021_01_07_425794	62	7	this	this	DT
10_1101-2021_01_07_425794	62	8	study	study	NN
10_1101-2021_01_07_425794	62	9	was	be	VBD
10_1101-2021_01_07_425794	62	10	released	release	VBN
10_1101-2021_01_07_425794	62	11	by	by	IN
10_1101-2021_01_07_425794	62	12	the	the	DT
10_1101-2021_01_07_425794	62	13	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	62	14	in	in	IN
10_1101-2021_01_07_425794	62	15	April	April	NNP
10_1101-2021_01_07_425794	62	16	2015	2015	CD
10_1101-2021_01_07_425794	62	17	.	.	.
10_1101-2021_01_07_425794	63	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	63	2	was	be	VBD
10_1101-2021_01_07_425794	63	3	released	release	VBN
10_1101-2021_01_07_425794	63	4	as	as	IN
10_1101-2021_01_07_425794	63	5	part	part	NN
10_1101-2021_01_07_425794	63	6	of	of	IN
10_1101-2021_01_07_425794	63	7	the	the	DT
10_1101-2021_01_07_425794	63	8	Patch	Patch	NNP
10_1101-2021_01_07_425794	63	9	2	2	CD
10_1101-2021_01_07_425794	63	10	release	release	NN
10_1101-2021_01_07_425794	63	11	of	of	IN
10_1101-2021_01_07_425794	63	12	the	the	DT
10_1101-2021_01_07_425794	63	13	GRCh38	GRCh38	NNP
10_1101-2021_01_07_425794	63	14	/	/	SYM
10_1101-2021_01_07_425794	63	15	hg38	hg38	NNP
10_1101-2021_01_07_425794	63	16	genome	genome	NNP
10_1101-2021_01_07_425794	63	17	build	build	NN
10_1101-2021_01_07_425794	63	18	.	.	.
10_1101-2021_01_07_425794	64	1	This	this	DT
10_1101-2021_01_07_425794	64	2	annotation	annotation	NN
10_1101-2021_01_07_425794	64	3	has	have	VBZ
10_1101-2021_01_07_425794	64	4	also	also	RB
10_1101-2021_01_07_425794	64	5	been	be	VBN
10_1101-2021_01_07_425794	64	6	included	include	VBN
10_1101-2021_01_07_425794	64	7	in	in	IN
10_1101-2021_01_07_425794	64	8	the	the	DT
10_1101-2021_01_07_425794	64	9	popular	popular	JJ
10_1101-2021_01_07_425794	64	10	RNA	RNA	NNP
10_1101-2021_01_07_425794	64	11	-	-	HYPH
10_1101-2021_01_07_425794	64	12	seq	seq	NN
10_1101-2021_01_07_425794	64	13	quantification	quantification	NN
10_1101-2021_01_07_425794	64	14	toolkit	toolkit	NNS
10_1101-2021_01_07_425794	64	15	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	64	16	[	[	-LRB-
10_1101-2021_01_07_425794	64	17	5	5	CD
10_1101-2021_01_07_425794	64	18	]	]	-RRB-
10_1101-2021_01_07_425794	64	19	as	as	IN
10_1101-2021_01_07_425794	64	20	the	the	DT
10_1101-2021_01_07_425794	64	21	default	default	NN
10_1101-2021_01_07_425794	64	22	annotation	annotation	NN
10_1101-2021_01_07_425794	64	23	used	use	VBN
10_1101-2021_01_07_425794	64	24	for	for	IN
10_1101-2021_01_07_425794	64	25	quantifying	quantify	VBG
10_1101-2021_01_07_425794	64	26	human	human	JJ
10_1101-2021_01_07_425794	64	27	RNA	RNA	NNP
10_1101-2021_01_07_425794	64	28	-	-	HYPH
10_1101-2021_01_07_425794	64	29	seq	seq	NN
10_1101-2021_01_07_425794	64	30	data	datum	NNS
10_1101-2021_01_07_425794	64	31	.	.	.
10_1101-2021_01_07_425794	65	1	The	the	DT
10_1101-2021_01_07_425794	65	2	inclusion	inclusion	NN
10_1101-2021_01_07_425794	65	3	of	of	IN
10_1101-2021_01_07_425794	65	4	this	this	DT
10_1101-2021_01_07_425794	65	5	old	old	JJ
10_1101-2021_01_07_425794	65	6	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	65	7	annotation	annotation	NN
10_1101-2021_01_07_425794	65	8	allowed	allow	VBD
10_1101-2021_01_07_425794	65	9	us	-PRON-	PRP
10_1101-2021_01_07_425794	65	10	to	to	TO
10_1101-2021_01_07_425794	65	11	investigate	investigate	VB
10_1101-2021_01_07_425794	65	12	how	how	WRB
10_1101-2021_01_07_425794	65	13	the	the	DT
10_1101-2021_01_07_425794	65	14	annotation	annotation	NN
10_1101-2021_01_07_425794	65	15	changes	change	NNS
10_1101-2021_01_07_425794	65	16	made	make	VBD
10_1101-2021_01_07_425794	65	17	recently	recently	RB
10_1101-2021_01_07_425794	65	18	to	to	IN
10_1101-2021_01_07_425794	65	19	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	65	20	affect	affect	VB
10_1101-2021_01_07_425794	65	21	the	the	DT
10_1101-2021_01_07_425794	65	22	quantification	quantification	NN
10_1101-2021_01_07_425794	65	23	result	result	NN
10_1101-2021_01_07_425794	65	24	of	of	IN
10_1101-2021_01_07_425794	65	25	RNA	RNA	NNP
10_1101-2021_01_07_425794	65	26	-	-	HYPH
10_1101-2021_01_07_425794	65	27	seq	seq	NN
10_1101-2021_01_07_425794	65	28	data	datum	NNS
10_1101-2021_01_07_425794	65	29	.	.	.
10_1101-2021_01_07_425794	66	1	The	the	DT
10_1101-2021_01_07_425794	66	2	4	4	CD
10_1101-2021_01_07_425794	66	3	.CC	.cc	SYM
10_1101-2021_01_07_425794	66	4	-	-	HYPH
10_1101-2021_01_07_425794	66	5	BY	by	IN
10_1101-2021_01_07_425794	66	6	-	-	HYPH
10_1101-2021_01_07_425794	66	7	NC	NC	NNP
10_1101-2021_01_07_425794	66	8	-	-	HYPH
10_1101-2021_01_07_425794	66	9	ND	ND	NNP
10_1101-2021_01_07_425794	66	10	4.0	4.0	CD
10_1101-2021_01_07_425794	66	11	International	international	JJ
10_1101-2021_01_07_425794	66	12	licensemade	licensemade	NN
10_1101-2021_01_07_425794	66	13	available	available	JJ
10_1101-2021_01_07_425794	66	14	under	under	IN
10_1101-2021_01_07_425794	66	15	a	a	DT
10_1101-2021_01_07_425794	66	16	(	(	-LRB-
10_1101-2021_01_07_425794	66	17	which	which	WDT
10_1101-2021_01_07_425794	66	18	was	be	VBD
10_1101-2021_01_07_425794	66	19	not	not	RB
10_1101-2021_01_07_425794	66	20	certified	certify	VBN
10_1101-2021_01_07_425794	66	21	by	by	IN
10_1101-2021_01_07_425794	66	22	peer	peer	NN
10_1101-2021_01_07_425794	66	23	review	review	NN
10_1101-2021_01_07_425794	66	24	)	)	-RRB-
10_1101-2021_01_07_425794	66	25	is	be	VBZ
10_1101-2021_01_07_425794	66	26	the	the	DT
10_1101-2021_01_07_425794	66	27	author	author	NN
10_1101-2021_01_07_425794	66	28	/	/	SYM
10_1101-2021_01_07_425794	66	29	funder	funder	NN
10_1101-2021_01_07_425794	66	30	,	,	,
10_1101-2021_01_07_425794	66	31	who	who	WP
10_1101-2021_01_07_425794	66	32	has	have	VBZ
10_1101-2021_01_07_425794	66	33	granted	grant	VBN
10_1101-2021_01_07_425794	66	34	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	66	35	a	a	DT
10_1101-2021_01_07_425794	66	36	license	license	NN
10_1101-2021_01_07_425794	66	37	to	to	TO
10_1101-2021_01_07_425794	66	38	display	display	VB
10_1101-2021_01_07_425794	66	39	the	the	DT
10_1101-2021_01_07_425794	66	40	preprint	preprint	NN
10_1101-2021_01_07_425794	66	41	in	in	IN
10_1101-2021_01_07_425794	66	42	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	66	43	.	.	.
10_1101-2021_01_07_425794	67	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	67	2	is	be	VBZ
10_1101-2021_01_07_425794	67	3	The	the	DT
10_1101-2021_01_07_425794	67	4	copyright	copyright	NN
10_1101-2021_01_07_425794	67	5	holder	holder	NN
10_1101-2021_01_07_425794	67	6	for	for	IN
10_1101-2021_01_07_425794	67	7	this	this	DT
10_1101-2021_01_07_425794	67	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	67	9	version	version	NN
10_1101-2021_01_07_425794	67	10	posted	post	VBD
10_1101-2021_01_07_425794	67	11	January	January	NNP
10_1101-2021_01_07_425794	67	12	8	8	CD
10_1101-2021_01_07_425794	67	13	,	,	,
10_1101-2021_01_07_425794	67	14	2021	2021	CD
10_1101-2021_01_07_425794	67	15	.	.	.
10_1101-2021_01_07_425794	67	16	;	;	:
10_1101-2021_01_07_425794	67	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	67	18	:	:	:
10_1101-2021_01_07_425794	67	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	67	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	67	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	67	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	67	23	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	67	24	annotation	annotation	NN
10_1101-2021_01_07_425794	67	25	in	in	IN
10_1101-2021_01_07_425794	67	26	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	67	27	is	be	VBZ
10_1101-2021_01_07_425794	67	28	slightly	slightly	RB
10_1101-2021_01_07_425794	67	29	different	different	JJ
10_1101-2021_01_07_425794	67	30	from	from	IN
10_1101-2021_01_07_425794	67	31	the	the	DT
10_1101-2021_01_07_425794	67	32	original	original	JJ
10_1101-2021_01_07_425794	67	33	one	one	NN
10_1101-2021_01_07_425794	67	34	in	in	IN
10_1101-2021_01_07_425794	67	35	that	that	IN
10_1101-2021_01_07_425794	67	36	the	the	DT
10_1101-2021_01_07_425794	67	37	overlapping	overlapping	NN
10_1101-2021_01_07_425794	67	38	exons	exon	NNS
10_1101-2021_01_07_425794	67	39	from	from	IN
10_1101-2021_01_07_425794	67	40	the	the	DT
10_1101-2021_01_07_425794	67	41	same	same	JJ
10_1101-2021_01_07_425794	67	42	gene	gene	NN
10_1101-2021_01_07_425794	67	43	were	be	VBD
10_1101-2021_01_07_425794	67	44	collapsed	collapse	VBN
10_1101-2021_01_07_425794	67	45	to	to	TO
10_1101-2021_01_07_425794	67	46	form	form	VB
10_1101-2021_01_07_425794	67	47	a	a	DT
10_1101-2021_01_07_425794	67	48	single	single	JJ
10_1101-2021_01_07_425794	67	49	continuous	continuous	JJ
10_1101-2021_01_07_425794	67	50	exon	exon	NN
10_1101-2021_01_07_425794	67	51	for	for	IN
10_1101-2021_01_07_425794	67	52	the	the	DT
10_1101-2021_01_07_425794	67	53	gene	gene	NN
10_1101-2021_01_07_425794	67	54	in	in	IN
10_1101-2021_01_07_425794	67	55	the	the	DT
10_1101-2021_01_07_425794	67	56	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	67	57	annotation	annotation	NN
10_1101-2021_01_07_425794	67	58	,	,	,
10_1101-2021_01_07_425794	67	59	however	however	RB
10_1101-2021_01_07_425794	67	60	this	this	DT
10_1101-2021_01_07_425794	67	61	difference	difference	NN
10_1101-2021_01_07_425794	67	62	will	will	MD
10_1101-2021_01_07_425794	67	63	not	not	RB
10_1101-2021_01_07_425794	67	64	change	change	VB
10_1101-2021_01_07_425794	67	65	the	the	DT
10_1101-2021_01_07_425794	67	66	gene	gene	NN
10_1101-2021_01_07_425794	67	67	-	-	HYPH
10_1101-2021_01_07_425794	67	68	level	level	NN
10_1101-2021_01_07_425794	67	69	RNA	RNA	NNP
10_1101-2021_01_07_425794	67	70	-	-	HYPH
10_1101-2021_01_07_425794	67	71	seq	seq	NN
10_1101-2021_01_07_425794	67	72	quantification	quantification	NN
10_1101-2021_01_07_425794	67	73	result	result	VB
10_1101-2021_01_07_425794	67	74	because	because	IN
10_1101-2021_01_07_425794	67	75	the	the	DT
10_1101-2021_01_07_425794	67	76	set	set	NN
10_1101-2021_01_07_425794	67	77	of	of	IN
10_1101-2021_01_07_425794	67	78	exonic	exonic	JJ
10_1101-2021_01_07_425794	67	79	bases	basis	NNS
10_1101-2021_01_07_425794	67	80	belonging	belong	VBG
10_1101-2021_01_07_425794	67	81	to	to	IN
10_1101-2021_01_07_425794	67	82	each	each	DT
10_1101-2021_01_07_425794	67	83	gene	gene	NN
10_1101-2021_01_07_425794	67	84	is	be	VBZ
10_1101-2021_01_07_425794	67	85	the	the	DT
10_1101-2021_01_07_425794	67	86	same	same	JJ
10_1101-2021_01_07_425794	67	87	between	between	IN
10_1101-2021_01_07_425794	67	88	the	the	DT
10_1101-2021_01_07_425794	67	89	original	original	JJ
10_1101-2021_01_07_425794	67	90	annotation	annotation	NN
10_1101-2021_01_07_425794	67	91	and	and	CC
10_1101-2021_01_07_425794	67	92	the	the	DT
10_1101-2021_01_07_425794	67	93	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	67	94	annotation	annotation	NN
10_1101-2021_01_07_425794	67	95	.	.	.
10_1101-2021_01_07_425794	68	1	As	as	IN
10_1101-2021_01_07_425794	68	2	this	this	DT
10_1101-2021_01_07_425794	68	3	old	old	JJ
10_1101-2021_01_07_425794	68	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	68	5	annotation	annotation	NN
10_1101-2021_01_07_425794	68	6	is	be	VBZ
10_1101-2021_01_07_425794	68	7	no	no	RB
10_1101-2021_01_07_425794	68	8	longer	long	RBR
10_1101-2021_01_07_425794	68	9	available	available	JJ
10_1101-2021_01_07_425794	68	10	for	for	IN
10_1101-2021_01_07_425794	68	11	downloading	download	VBG
10_1101-2021_01_07_425794	68	12	at	at	IN
10_1101-2021_01_07_425794	68	13	the	the	DT
10_1101-2021_01_07_425794	68	14	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	68	15	FTP	FTP	NNP
10_1101-2021_01_07_425794	68	16	site	site	NN
10_1101-2021_01_07_425794	68	17	,	,	,
10_1101-2021_01_07_425794	68	18	we	-PRON-	PRP
10_1101-2021_01_07_425794	68	19	instead	instead	RB
10_1101-2021_01_07_425794	68	20	used	use	VBD
10_1101-2021_01_07_425794	68	21	the	the	DT
10_1101-2021_01_07_425794	68	22	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	68	23	annotation	annotation	NN
10_1101-2021_01_07_425794	68	24	in	in	IN
10_1101-2021_01_07_425794	68	25	this	this	DT
10_1101-2021_01_07_425794	68	26	study	study	NN
10_1101-2021_01_07_425794	68	27	and	and	CC
10_1101-2021_01_07_425794	68	28	we	-PRON-	PRP
10_1101-2021_01_07_425794	68	29	denote	denote	VBP
10_1101-2021_01_07_425794	68	30	this	this	DT
10_1101-2021_01_07_425794	68	31	annotation	annotation	NN
10_1101-2021_01_07_425794	68	32	as	as	IN
10_1101-2021_01_07_425794	68	33	‘	'	``
10_1101-2021_01_07_425794	68	34	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	68	35	-	-	HYPH
10_1101-2021_01_07_425794	68	36	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	68	37	’	'	''
10_1101-2021_01_07_425794	68	38	.	.	.
10_1101-2021_01_07_425794	69	1	When	when	WRB
10_1101-2021_01_07_425794	69	2	matching	match	VBG
10_1101-2021_01_07_425794	69	3	genes	gene	NNS
10_1101-2021_01_07_425794	69	4	from	from	IN
10_1101-2021_01_07_425794	69	5	different	different	JJ
10_1101-2021_01_07_425794	69	6	annotations	annotation	NNS
10_1101-2021_01_07_425794	69	7	,	,	,
10_1101-2021_01_07_425794	69	8	we	-PRON-	PRP
10_1101-2021_01_07_425794	69	9	converted	convert	VBD
10_1101-2021_01_07_425794	69	10	the	the	DT
10_1101-2021_01_07_425794	69	11	gene	gene	NN
10_1101-2021_01_07_425794	69	12	identifiers	identifier	NNS
10_1101-2021_01_07_425794	69	13	using	use	VBG
10_1101-2021_01_07_425794	69	14	the	the	DT
10_1101-2021_01_07_425794	69	15	Bioconductor	Bioconductor	NNP
10_1101-2021_01_07_425794	69	16	package	package	NN
10_1101-2021_01_07_425794	69	17	‘	'	``
10_1101-2021_01_07_425794	69	18	org.Hs.eg.db	org.Hs.eg.db	NNS
10_1101-2021_01_07_425794	69	19	’	'	''
10_1101-2021_01_07_425794	69	20	[	[	-LRB-
10_1101-2021_01_07_425794	69	21	17	17	CD
10_1101-2021_01_07_425794	69	22	]	]	-RRB-
10_1101-2021_01_07_425794	69	23	and	and	CC
10_1101-2021_01_07_425794	69	24	then	then	RB
10_1101-2021_01_07_425794	69	25	compared	compare	VBD
10_1101-2021_01_07_425794	69	26	them	-PRON-	PRP
10_1101-2021_01_07_425794	69	27	to	to	TO
10_1101-2021_01_07_425794	69	28	find	find	VB
10_1101-2021_01_07_425794	69	29	common	common	JJ
10_1101-2021_01_07_425794	69	30	genes	gene	NNS
10_1101-2021_01_07_425794	69	31	between	between	IN
10_1101-2021_01_07_425794	69	32	annotations	annotation	NNS
10_1101-2021_01_07_425794	69	33	.	.	.
10_1101-2021_01_07_425794	70	1	2.3	2.3	CD
10_1101-2021_01_07_425794	70	2	Mapping	mapping	NN
10_1101-2021_01_07_425794	70	3	,	,	,
10_1101-2021_01_07_425794	70	4	quantification	quantification	NN
10_1101-2021_01_07_425794	70	5	and	and	CC
10_1101-2021_01_07_425794	70	6	normalization	normalization	NN
10_1101-2021_01_07_425794	70	7	of	of	IN
10_1101-2021_01_07_425794	70	8	RNA	RNA	NNP
10_1101-2021_01_07_425794	70	9	-	-	HYPH
10_1101-2021_01_07_425794	70	10	seq	seq	NN
10_1101-2021_01_07_425794	70	11	data	datum	NNS
10_1101-2021_01_07_425794	70	12	Analysis	analysis	NN
10_1101-2021_01_07_425794	70	13	of	of	IN
10_1101-2021_01_07_425794	70	14	the	the	DT
10_1101-2021_01_07_425794	70	15	RNA	RNA	NNP
10_1101-2021_01_07_425794	70	16	-	-	HYPH
10_1101-2021_01_07_425794	70	17	seq	seq	NN
10_1101-2021_01_07_425794	70	18	data	datum	NNS
10_1101-2021_01_07_425794	70	19	was	be	VBD
10_1101-2021_01_07_425794	70	20	performed	perform	VBN
10_1101-2021_01_07_425794	70	21	using	use	VBG
10_1101-2021_01_07_425794	70	22	Bioconductor	Bioconductor	NNP
10_1101-2021_01_07_425794	70	23	R	R	NNP
10_1101-2021_01_07_425794	70	24	packages	package	NNS
10_1101-2021_01_07_425794	70	25	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	70	26	and	and	CC
10_1101-2021_01_07_425794	70	27	limma	limma	VB
10_1101-2021_01_07_425794	70	28	[	[	-LRB-
10_1101-2021_01_07_425794	70	29	5	5	CD
10_1101-2021_01_07_425794	70	30	,	,	,
10_1101-2021_01_07_425794	70	31	18	18	CD
10_1101-2021_01_07_425794	70	32	,	,	,
10_1101-2021_01_07_425794	70	33	19	19	CD
10_1101-2021_01_07_425794	70	34	]	]	-RRB-
10_1101-2021_01_07_425794	70	35	.	.	.
10_1101-2021_01_07_425794	71	1	The	the	DT
10_1101-2021_01_07_425794	71	2	human	human	JJ
10_1101-2021_01_07_425794	71	3	reference	reference	NN
10_1101-2021_01_07_425794	71	4	genome	genome	NN
10_1101-2021_01_07_425794	71	5	(	(	-LRB-
10_1101-2021_01_07_425794	71	6	GRCh38	grch38	NN
10_1101-2021_01_07_425794	71	7	)	)	-RRB-
10_1101-2021_01_07_425794	71	8	from	from	IN
10_1101-2021_01_07_425794	71	9	GENCODE	GENCODE	NNP
10_1101-2021_01_07_425794	71	10	(	(	-LRB-
10_1101-2021_01_07_425794	71	11	version	version	NN
10_1101-2021_01_07_425794	71	12	34	34	CD
10_1101-2021_01_07_425794	71	13	downloaded	download	VBN
10_1101-2021_01_07_425794	71	14	from	from	IN
10_1101-2021_01_07_425794	71	15	ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/	ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/	NNP
10_1101-2021_01_07_425794	71	16	release_34	release_34	NNP
10_1101-2021_01_07_425794	71	17	/	/	SYM
10_1101-2021_01_07_425794	71	18	GRCh38.primary_assembly.genome.fa.gz	GRCh38.primary_assembly.genome.fa.gz	NNS
10_1101-2021_01_07_425794	71	19	)	)	-RRB-
10_1101-2021_01_07_425794	71	20	was	be	VBD
10_1101-2021_01_07_425794	71	21	indexed	index	VBN
10_1101-2021_01_07_425794	71	22	using	use	VBG
10_1101-2021_01_07_425794	71	23	the	the	DT
10_1101-2021_01_07_425794	71	24	buildin-	buildin-	NN
10_1101-2021_01_07_425794	71	25	dex	dex	NNP
10_1101-2021_01_07_425794	71	26	function	function	NN
10_1101-2021_01_07_425794	71	27	in	in	IN
10_1101-2021_01_07_425794	71	28	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	71	29	v2.2.6	v2.2.6	NNP
10_1101-2021_01_07_425794	71	30	[	[	-LRB-
10_1101-2021_01_07_425794	71	31	5	5	CD
10_1101-2021_01_07_425794	71	32	]	]	-RRB-
10_1101-2021_01_07_425794	71	33	.	.	.
10_1101-2021_01_07_425794	72	1	Sequencing	sequencing	NN
10_1101-2021_01_07_425794	72	2	reads	read	NNS
10_1101-2021_01_07_425794	72	3	were	be	VBD
10_1101-2021_01_07_425794	72	4	then	then	RB
10_1101-2021_01_07_425794	72	5	mapped	map	VBN
10_1101-2021_01_07_425794	72	6	to	to	IN
10_1101-2021_01_07_425794	72	7	the	the	DT
10_1101-2021_01_07_425794	72	8	reference	reference	NN
10_1101-2021_01_07_425794	72	9	genome	genome	NN
10_1101-2021_01_07_425794	72	10	using	use	VBG
10_1101-2021_01_07_425794	72	11	the	the	DT
10_1101-2021_01_07_425794	72	12	align	align	NN
10_1101-2021_01_07_425794	72	13	function	function	NN
10_1101-2021_01_07_425794	72	14	in	in	IN
10_1101-2021_01_07_425794	72	15	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	72	16	[	[	-LRB-
10_1101-2021_01_07_425794	72	17	5	5	CD
10_1101-2021_01_07_425794	72	18	,	,	,
10_1101-2021_01_07_425794	72	19	20	20	CD
10_1101-2021_01_07_425794	72	20	]	]	-RRB-
10_1101-2021_01_07_425794	72	21	.	.	.
10_1101-2021_01_07_425794	73	1	During	during	IN
10_1101-2021_01_07_425794	73	2	the	the	DT
10_1101-2021_01_07_425794	73	3	alignment	alignment	NN
10_1101-2021_01_07_425794	73	4	,	,	,
10_1101-2021_01_07_425794	73	5	the	the	DT
10_1101-2021_01_07_425794	73	6	En-	en-	CD
10_1101-2021_01_07_425794	73	7	sembl	sembl	NN
10_1101-2021_01_07_425794	73	8	,	,	,
10_1101-2021_01_07_425794	73	9	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	73	10	-	-	HYPH
10_1101-2021_01_07_425794	73	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	73	12	and	and	CC
10_1101-2021_01_07_425794	73	13	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	73	14	-	-	HYPH
10_1101-2021_01_07_425794	73	15	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	73	16	annotations	annotation	NNS
10_1101-2021_01_07_425794	73	17	were	be	VBD
10_1101-2021_01_07_425794	73	18	also	also	RB
10_1101-2021_01_07_425794	73	19	included	include	VBN
10_1101-2021_01_07_425794	73	20	as	as	IN
10_1101-2021_01_07_425794	73	21	an	an	DT
10_1101-2021_01_07_425794	73	22	extra	extra	JJ
10_1101-2021_01_07_425794	73	23	parameter	parameter	NN
10_1101-2021_01_07_425794	73	24	to	to	TO
10_1101-2021_01_07_425794	73	25	improve	improve	VB
10_1101-2021_01_07_425794	73	26	alignment	alignment	NN
10_1101-2021_01_07_425794	73	27	.	.	.
10_1101-2021_01_07_425794	74	1	Gene	gene	NN
10_1101-2021_01_07_425794	74	2	-	-	HYPH
10_1101-2021_01_07_425794	74	3	level	level	NN
10_1101-2021_01_07_425794	74	4	read	read	NN
10_1101-2021_01_07_425794	74	5	counts	count	NNS
10_1101-2021_01_07_425794	74	6	were	be	VBD
10_1101-2021_01_07_425794	74	7	obtained	obtain	VBN
10_1101-2021_01_07_425794	74	8	with	with	IN
10_1101-2021_01_07_425794	74	9	featureCounts	featurecount	NNS
10_1101-2021_01_07_425794	74	10	[	[	-LRB-
10_1101-2021_01_07_425794	74	11	4	4	CD
10_1101-2021_01_07_425794	74	12	,	,	,
10_1101-2021_01_07_425794	74	13	5	5	CD
10_1101-2021_01_07_425794	74	14	]	]	-RRB-
10_1101-2021_01_07_425794	74	15	,	,	,
10_1101-2021_01_07_425794	74	16	a	a	DT
10_1101-2021_01_07_425794	74	17	read	read	NN
10_1101-2021_01_07_425794	74	18	count	count	NN
10_1101-2021_01_07_425794	74	19	summa-	summa-	JJ
10_1101-2021_01_07_425794	74	20	rization	rization	NN
10_1101-2021_01_07_425794	74	21	function	function	NN
10_1101-2021_01_07_425794	74	22	within	within	IN
10_1101-2021_01_07_425794	74	23	the	the	DT
10_1101-2021_01_07_425794	74	24	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	74	25	package	package	NN
10_1101-2021_01_07_425794	74	26	.	.	.
10_1101-2021_01_07_425794	75	1	The	the	DT
10_1101-2021_01_07_425794	75	2	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	75	3	,	,	,
10_1101-2021_01_07_425794	75	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	75	5	-	-	HYPH
10_1101-2021_01_07_425794	75	6	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	75	7	and	and	CC
10_1101-2021_01_07_425794	75	8	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	75	9	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	75	10	annotations	annotation	NNS
10_1101-2021_01_07_425794	75	11	were	be	VBD
10_1101-2021_01_07_425794	75	12	provided	provide	VBN
10_1101-2021_01_07_425794	75	13	to	to	IN
10_1101-2021_01_07_425794	75	14	featureCounts	featurecount	NNS
10_1101-2021_01_07_425794	75	15	to	to	TO
10_1101-2021_01_07_425794	75	16	generate	generate	VB
10_1101-2021_01_07_425794	75	17	read	read	VBN
10_1101-2021_01_07_425794	75	18	counts	count	NNS
10_1101-2021_01_07_425794	75	19	for	for	IN
10_1101-2021_01_07_425794	75	20	genes	gene	NNS
10_1101-2021_01_07_425794	75	21	included	include	VBN
10_1101-2021_01_07_425794	75	22	in	in	IN
10_1101-2021_01_07_425794	75	23	these	these	DT
10_1101-2021_01_07_425794	75	24	annotations	annotation	NNS
10_1101-2021_01_07_425794	75	25	respectively	respectively	RB
10_1101-2021_01_07_425794	75	26	.	.	.
10_1101-2021_01_07_425794	76	1	The	the	DT
10_1101-2021_01_07_425794	76	2	gene	gene	NN
10_1101-2021_01_07_425794	76	3	-	-	HYPH
10_1101-2021_01_07_425794	76	4	level	level	NN
10_1101-2021_01_07_425794	76	5	read	read	NN
10_1101-2021_01_07_425794	76	6	counts	count	NNS
10_1101-2021_01_07_425794	76	7	were	be	VBD
10_1101-2021_01_07_425794	76	8	transformed	transform	VBN
10_1101-2021_01_07_425794	76	9	using	use	VBG
10_1101-2021_01_07_425794	76	10	the	the	DT
10_1101-2021_01_07_425794	76	11	voom	voom	JJ
10_1101-2021_01_07_425794	76	12	function	function	NN
10_1101-2021_01_07_425794	76	13	in	in	IN
10_1101-2021_01_07_425794	76	14	limma	limma	NNP
10_1101-2021_01_07_425794	76	15	[	[	-LRB-
10_1101-2021_01_07_425794	76	16	18	18	CD
10_1101-2021_01_07_425794	76	17	,	,	,
10_1101-2021_01_07_425794	76	18	21	21	CD
10_1101-2021_01_07_425794	76	19	]	]	-RRB-
10_1101-2021_01_07_425794	76	20	and	and	CC
10_1101-2021_01_07_425794	76	21	then	then	RB
10_1101-2021_01_07_425794	76	22	normalized	normalize	VBD
10_1101-2021_01_07_425794	76	23	using	use	VBG
10_1101-2021_01_07_425794	76	24	the	the	DT
10_1101-2021_01_07_425794	76	25	library	library	NN
10_1101-2021_01_07_425794	76	26	size	size	NN
10_1101-2021_01_07_425794	76	27	[	[	-LRB-
10_1101-2021_01_07_425794	76	28	22	22	CD
10_1101-2021_01_07_425794	76	29	]	]	-RRB-
10_1101-2021_01_07_425794	76	30	,	,	,
10_1101-2021_01_07_425794	76	31	quantile	quantile	NNP
10_1101-2021_01_07_425794	76	32	[	[	-LRB-
10_1101-2021_01_07_425794	76	33	23	23	CD
10_1101-2021_01_07_425794	76	34	]	]	-RRB-
10_1101-2021_01_07_425794	76	35	and	and	CC
10_1101-2021_01_07_425794	76	36	trimmed	trim	VBN
10_1101-2021_01_07_425794	76	37	mean	mean	NN
10_1101-2021_01_07_425794	76	38	of	of	IN
10_1101-2021_01_07_425794	76	39	M-	M-	NNP
10_1101-2021_01_07_425794	76	40	values	value	NNS
10_1101-2021_01_07_425794	76	41	(	(	-LRB-
10_1101-2021_01_07_425794	76	42	TMM	TMM	NNP
10_1101-2021_01_07_425794	76	43	)	)	-RRB-
10_1101-2021_01_07_425794	76	44	[	[	-LRB-
10_1101-2021_01_07_425794	76	45	24	24	CD
10_1101-2021_01_07_425794	76	46	]	]	-RRB-
10_1101-2021_01_07_425794	76	47	methods	method	NNS
10_1101-2021_01_07_425794	76	48	,	,	,
10_1101-2021_01_07_425794	76	49	respectively	respectively	RB
10_1101-2021_01_07_425794	76	50	,	,	,
10_1101-2021_01_07_425794	76	51	prior	prior	RB
10_1101-2021_01_07_425794	76	52	to	to	IN
10_1101-2021_01_07_425794	76	53	performing	perform	VBG
10_1101-2021_01_07_425794	76	54	further	further	JJ
10_1101-2021_01_07_425794	76	55	analysis	analysis	NN
10_1101-2021_01_07_425794	76	56	.	.	.
10_1101-2021_01_07_425794	77	1	The	the	DT
10_1101-2021_01_07_425794	77	2	library	library	NN
10_1101-2021_01_07_425794	77	3	size	size	NN
10_1101-2021_01_07_425794	77	4	normalization	normalization	NN
10_1101-2021_01_07_425794	77	5	was	be	VBD
10_1101-2021_01_07_425794	77	6	performed	perform	VBN
10_1101-2021_01_07_425794	77	7	by	by	IN
10_1101-2021_01_07_425794	77	8	providing	provide	VBG
10_1101-2021_01_07_425794	77	9	raw	raw	JJ
10_1101-2021_01_07_425794	77	10	read	read	VB
10_1101-2021_01_07_425794	77	11	counts	count	NNS
10_1101-2021_01_07_425794	77	12	to	to	TO
10_1101-2021_01_07_425794	77	13	voom	voom	VB
10_1101-2021_01_07_425794	77	14	and	and	CC
10_1101-2021_01_07_425794	77	15	then	then	RB
10_1101-2021_01_07_425794	77	16	running	run	VBG
10_1101-2021_01_07_425794	77	17	voom	voom	NN
10_1101-2021_01_07_425794	77	18	with	with	IN
10_1101-2021_01_07_425794	77	19	the	the	DT
10_1101-2021_01_07_425794	77	20	‘	'	``
10_1101-2021_01_07_425794	77	21	normalize.method	normalize.method	NNP
10_1101-2021_01_07_425794	77	22	’	'	''
10_1101-2021_01_07_425794	77	23	parameter	parameter	NN
10_1101-2021_01_07_425794	77	24	set	set	VBN
10_1101-2021_01_07_425794	77	25	to	to	IN
10_1101-2021_01_07_425794	77	26	‘	'	``
10_1101-2021_01_07_425794	77	27	none	none	NN
10_1101-2021_01_07_425794	77	28	’	'	''
10_1101-2021_01_07_425794	77	29	.	.	.
10_1101-2021_01_07_425794	78	1	The	the	DT
10_1101-2021_01_07_425794	78	2	quantile	quantile	NN
10_1101-2021_01_07_425794	78	3	nor-	nor-	NN
10_1101-2021_01_07_425794	78	4	malization	malization	NN
10_1101-2021_01_07_425794	78	5	was	be	VBD
10_1101-2021_01_07_425794	78	6	performed	perform	VBN
10_1101-2021_01_07_425794	78	7	by	by	IN
10_1101-2021_01_07_425794	78	8	providing	provide	VBG
10_1101-2021_01_07_425794	78	9	raw	raw	JJ
10_1101-2021_01_07_425794	78	10	read	read	VB
10_1101-2021_01_07_425794	78	11	counts	count	NNS
10_1101-2021_01_07_425794	78	12	to	to	TO
10_1101-2021_01_07_425794	78	13	voom	voom	VB
10_1101-2021_01_07_425794	78	14	and	and	CC
10_1101-2021_01_07_425794	78	15	then	then	RB
10_1101-2021_01_07_425794	78	16	running	run	VBG
10_1101-2021_01_07_425794	78	17	voom	voom	NN
10_1101-2021_01_07_425794	78	18	with	with	IN
10_1101-2021_01_07_425794	78	19	the	the	DT
10_1101-2021_01_07_425794	78	20	‘	'	``
10_1101-2021_01_07_425794	78	21	normalize.method	normalize.method	NNP
10_1101-2021_01_07_425794	78	22	’	'	''
10_1101-2021_01_07_425794	78	23	parameter	parameter	NN
10_1101-2021_01_07_425794	78	24	set	set	VBN
10_1101-2021_01_07_425794	78	25	to	to	IN
10_1101-2021_01_07_425794	78	26	‘	'	``
10_1101-2021_01_07_425794	78	27	quantile	quantile	VB
10_1101-2021_01_07_425794	78	28	’	'	''
10_1101-2021_01_07_425794	78	29	.	.	.
10_1101-2021_01_07_425794	79	1	For	for	IN
10_1101-2021_01_07_425794	79	2	TMM	TMM	NNP
10_1101-2021_01_07_425794	79	3	normalization	normalization	NN
10_1101-2021_01_07_425794	79	4	,	,	,
10_1101-2021_01_07_425794	79	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	79	6	first	first	RB
10_1101-2021_01_07_425794	79	7	calculated	calculate	VBD
10_1101-2021_01_07_425794	79	8	the	the	DT
10_1101-2021_01_07_425794	79	9	TMM	TMM	NNP
10_1101-2021_01_07_425794	79	10	normalization	normalization	NN
10_1101-2021_01_07_425794	79	11	factor	factor	NN
10_1101-2021_01_07_425794	79	12	for	for	IN
10_1101-2021_01_07_425794	79	13	each	each	DT
10_1101-2021_01_07_425794	79	14	library	library	NN
10_1101-2021_01_07_425794	79	15	using	use	VBG
10_1101-2021_01_07_425794	79	16	the	the	DT
10_1101-2021_01_07_425794	79	17	calcNormFactors	calcNormFactors	NNP
10_1101-2021_01_07_425794	79	18	method	method	NN
10_1101-2021_01_07_425794	79	19	in	in	IN
10_1101-2021_01_07_425794	79	20	edgeR	edgeR	NNP
10_1101-2021_01_07_425794	79	21	[	[	-LRB-
10_1101-2021_01_07_425794	79	22	25	25	CD
10_1101-2021_01_07_425794	79	23	]	]	-RRB-
10_1101-2021_01_07_425794	79	24	.	.	.
10_1101-2021_01_07_425794	80	1	Then	then	RB
10_1101-2021_01_07_425794	80	2	we	-PRON-	PRP
10_1101-2021_01_07_425794	80	3	provided	provide	VBD
10_1101-2021_01_07_425794	80	4	raw	raw	JJ
10_1101-2021_01_07_425794	80	5	read	read	NN
10_1101-2021_01_07_425794	80	6	counts	count	NNS
10_1101-2021_01_07_425794	80	7	and	and	CC
10_1101-2021_01_07_425794	80	8	the	the	DT
10_1101-2021_01_07_425794	80	9	TMM	TMM	NNP
10_1101-2021_01_07_425794	80	10	normalization	normalization	NN
10_1101-2021_01_07_425794	80	11	factors	factor	VBZ
10_1101-2021_01_07_425794	80	12	to	to	TO
10_1101-2021_01_07_425794	80	13	voom	voom	VB
10_1101-2021_01_07_425794	80	14	and	and	CC
10_1101-2021_01_07_425794	80	15	ran	run	VBD
10_1101-2021_01_07_425794	80	16	it	-PRON-	PRP
10_1101-2021_01_07_425794	80	17	with	with	IN
10_1101-2021_01_07_425794	80	18	the	the	DT
10_1101-2021_01_07_425794	80	19	‘	'	``
10_1101-2021_01_07_425794	80	20	normalize.method	normalize.method	NNP
10_1101-2021_01_07_425794	80	21	’	'	''
10_1101-2021_01_07_425794	80	22	parameter	parameter	NN
10_1101-2021_01_07_425794	80	23	set	set	VBN
10_1101-2021_01_07_425794	80	24	to	to	IN
10_1101-2021_01_07_425794	80	25	‘	'	``
10_1101-2021_01_07_425794	80	26	none	none	NN
10_1101-2021_01_07_425794	80	27	’	'	''
10_1101-2021_01_07_425794	80	28	.	.	.
10_1101-2021_01_07_425794	81	1	The	the	DT
10_1101-2021_01_07_425794	81	2	log2CPM	log2CPM	NNP
10_1101-2021_01_07_425794	81	3	(	(	-LRB-
10_1101-2021_01_07_425794	81	4	log2	log2	NNP
10_1101-2021_01_07_425794	81	5	counts	count	NNS
10_1101-2021_01_07_425794	81	6	per	per	IN
10_1101-2021_01_07_425794	81	7	million	million	CD
10_1101-2021_01_07_425794	81	8	)	)	-RRB-
10_1101-2021_01_07_425794	81	9	values	value	NNS
10_1101-2021_01_07_425794	81	10	,	,	,
10_1101-2021_01_07_425794	81	11	produced	produce	VBN
10_1101-2021_01_07_425794	81	12	by	by	IN
10_1101-2021_01_07_425794	81	13	the	the	DT
10_1101-2021_01_07_425794	81	14	voom	voom	JJ
10_1101-2021_01_07_425794	81	15	function	function	NN
10_1101-2021_01_07_425794	81	16	for	for	IN
10_1101-2021_01_07_425794	81	17	each	each	DT
10_1101-2021_01_07_425794	81	18	gene	gene	NN
10_1101-2021_01_07_425794	81	19	5	5	CD
10_1101-2021_01_07_425794	81	20	.CC	.CC	,
10_1101-2021_01_07_425794	81	21	-	-	HYPH
10_1101-2021_01_07_425794	81	22	BY	by	IN
10_1101-2021_01_07_425794	81	23	-	-	HYPH
10_1101-2021_01_07_425794	81	24	NC	NC	NNP
10_1101-2021_01_07_425794	81	25	-	-	HYPH
10_1101-2021_01_07_425794	81	26	ND	ND	NNP
10_1101-2021_01_07_425794	81	27	4.0	4.0	CD
10_1101-2021_01_07_425794	81	28	International	international	JJ
10_1101-2021_01_07_425794	81	29	licensemade	licensemade	NN
10_1101-2021_01_07_425794	81	30	available	available	JJ
10_1101-2021_01_07_425794	81	31	under	under	IN
10_1101-2021_01_07_425794	81	32	a	a	DT
10_1101-2021_01_07_425794	81	33	(	(	-LRB-
10_1101-2021_01_07_425794	81	34	which	which	WDT
10_1101-2021_01_07_425794	81	35	was	be	VBD
10_1101-2021_01_07_425794	81	36	not	not	RB
10_1101-2021_01_07_425794	81	37	certified	certify	VBN
10_1101-2021_01_07_425794	81	38	by	by	IN
10_1101-2021_01_07_425794	81	39	peer	peer	NN
10_1101-2021_01_07_425794	81	40	review	review	NN
10_1101-2021_01_07_425794	81	41	)	)	-RRB-
10_1101-2021_01_07_425794	81	42	is	be	VBZ
10_1101-2021_01_07_425794	81	43	the	the	DT
10_1101-2021_01_07_425794	81	44	author	author	NN
10_1101-2021_01_07_425794	81	45	/	/	SYM
10_1101-2021_01_07_425794	81	46	funder	funder	NN
10_1101-2021_01_07_425794	81	47	,	,	,
10_1101-2021_01_07_425794	81	48	who	who	WP
10_1101-2021_01_07_425794	81	49	has	have	VBZ
10_1101-2021_01_07_425794	81	50	granted	grant	VBN
10_1101-2021_01_07_425794	81	51	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	81	52	a	a	DT
10_1101-2021_01_07_425794	81	53	license	license	NN
10_1101-2021_01_07_425794	81	54	to	to	TO
10_1101-2021_01_07_425794	81	55	display	display	VB
10_1101-2021_01_07_425794	81	56	the	the	DT
10_1101-2021_01_07_425794	81	57	preprint	preprint	NN
10_1101-2021_01_07_425794	81	58	in	in	IN
10_1101-2021_01_07_425794	81	59	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	81	60	.	.	.
10_1101-2021_01_07_425794	82	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	82	2	is	be	VBZ
10_1101-2021_01_07_425794	82	3	The	the	DT
10_1101-2021_01_07_425794	82	4	copyright	copyright	NN
10_1101-2021_01_07_425794	82	5	holder	holder	NN
10_1101-2021_01_07_425794	82	6	for	for	IN
10_1101-2021_01_07_425794	82	7	this	this	DT
10_1101-2021_01_07_425794	82	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	82	9	version	version	NN
10_1101-2021_01_07_425794	82	10	posted	post	VBD
10_1101-2021_01_07_425794	82	11	January	January	NNP
10_1101-2021_01_07_425794	82	12	8	8	CD
10_1101-2021_01_07_425794	82	13	,	,	,
10_1101-2021_01_07_425794	82	14	2021	2021	CD
10_1101-2021_01_07_425794	82	15	.	.	.
10_1101-2021_01_07_425794	82	16	;	;	:
10_1101-2021_01_07_425794	82	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	82	18	:	:	:
10_1101-2021_01_07_425794	82	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	82	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	82	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	82	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	82	23	in	in	IN
10_1101-2021_01_07_425794	82	24	each	each	DT
10_1101-2021_01_07_425794	82	25	library	library	NN
10_1101-2021_01_07_425794	82	26	,	,	,
10_1101-2021_01_07_425794	82	27	were	be	VBD
10_1101-2021_01_07_425794	82	28	converted	convert	VBN
10_1101-2021_01_07_425794	82	29	to	to	IN
10_1101-2021_01_07_425794	82	30	log2FPKM	log2FPKM	NNP
10_1101-2021_01_07_425794	82	31	(	(	-LRB-
10_1101-2021_01_07_425794	82	32	log2	log2	NN
10_1101-2021_01_07_425794	82	33	fragments	fragment	NNS
10_1101-2021_01_07_425794	82	34	per	per	IN
10_1101-2021_01_07_425794	82	35	kilo	kilo	NNP
10_1101-2021_01_07_425794	82	36	exonic	exonic	JJ
10_1101-2021_01_07_425794	82	37	bases	basis	NNS
10_1101-2021_01_07_425794	82	38	per	per	IN
10_1101-2021_01_07_425794	82	39	million	million	CD
10_1101-2021_01_07_425794	82	40	mapped	map	VBN
10_1101-2021_01_07_425794	82	41	fragments	fragment	NNS
10_1101-2021_01_07_425794	82	42	)	)	-RRB-
10_1101-2021_01_07_425794	82	43	expression	expression	NN
10_1101-2021_01_07_425794	82	44	values	value	NNS
10_1101-2021_01_07_425794	82	45	for	for	IN
10_1101-2021_01_07_425794	82	46	further	further	JJ
10_1101-2021_01_07_425794	82	47	analysis	analysis	NN
10_1101-2021_01_07_425794	82	48	.	.	.
10_1101-2021_01_07_425794	83	1	2.4	2.4	CD
10_1101-2021_01_07_425794	83	2	Titration	titration	NN
10_1101-2021_01_07_425794	83	3	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	83	4	The	the	DT
10_1101-2021_01_07_425794	83	5	RNA	RNA	NNP
10_1101-2021_01_07_425794	83	6	-	-	HYPH
10_1101-2021_01_07_425794	83	7	seq	seq	NN
10_1101-2021_01_07_425794	83	8	data	datum	NNS
10_1101-2021_01_07_425794	83	9	from	from	IN
10_1101-2021_01_07_425794	83	10	the	the	DT
10_1101-2021_01_07_425794	83	11	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	83	12	project	project	NN
10_1101-2021_01_07_425794	83	13	have	have	VBP
10_1101-2021_01_07_425794	83	14	titration	titration	NN
10_1101-2021_01_07_425794	83	15	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	83	16	built	build	VBN
10_1101-2021_01_07_425794	83	17	into	into	IN
10_1101-2021_01_07_425794	83	18	them	-PRON-	PRP
10_1101-2021_01_07_425794	83	19	,	,	,
10_1101-2021_01_07_425794	83	20	such	such	JJ
10_1101-2021_01_07_425794	83	21	that	that	IN
10_1101-2021_01_07_425794	83	22	a	a	DT
10_1101-2021_01_07_425794	83	23	gene	gene	NN
10_1101-2021_01_07_425794	83	24	is	be	VBZ
10_1101-2021_01_07_425794	83	25	considered	consider	VBN
10_1101-2021_01_07_425794	83	26	to	to	TO
10_1101-2021_01_07_425794	83	27	preserve	preserve	VB
10_1101-2021_01_07_425794	83	28	titration	titration	NN
10_1101-2021_01_07_425794	83	29	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	83	30	if	if	IN
10_1101-2021_01_07_425794	83	31	the	the	DT
10_1101-2021_01_07_425794	83	32	expression	expression	NN
10_1101-2021_01_07_425794	83	33	of	of	IN
10_1101-2021_01_07_425794	83	34	the	the	DT
10_1101-2021_01_07_425794	83	35	gene	gene	NN
10_1101-2021_01_07_425794	83	36	follows	follow	VBZ
10_1101-2021_01_07_425794	83	37	A	a	DT
10_1101-2021_01_07_425794	83	38	≥	≥	NN
10_1101-2021_01_07_425794	83	39	C≥	c≥	NN
10_1101-2021_01_07_425794	83	40	D	d	NN
10_1101-2021_01_07_425794	83	41	≥B	≥b	NN
10_1101-2021_01_07_425794	83	42	when	when	WRB
10_1101-2021_01_07_425794	83	43	its	-PRON-	PRP$
10_1101-2021_01_07_425794	83	44	expression	expression	NN
10_1101-2021_01_07_425794	83	45	in	in	IN
10_1101-2021_01_07_425794	83	46	sample	sample	NN
10_1101-2021_01_07_425794	83	47	A	A	NNP
10_1101-2021_01_07_425794	83	48	is	be	VBZ
10_1101-2021_01_07_425794	83	49	greater	great	JJR
10_1101-2021_01_07_425794	83	50	than	than	IN
10_1101-2021_01_07_425794	83	51	or	or	CC
10_1101-2021_01_07_425794	83	52	equal	equal	JJ
10_1101-2021_01_07_425794	83	53	to	to	IN
10_1101-2021_01_07_425794	83	54	that	that	DT
10_1101-2021_01_07_425794	83	55	in	in	IN
10_1101-2021_01_07_425794	83	56	sample	sample	NN
10_1101-2021_01_07_425794	83	57	B	B	NNP
10_1101-2021_01_07_425794	83	58	,	,	,
10_1101-2021_01_07_425794	83	59	or	or	CC
10_1101-2021_01_07_425794	83	60	follows	follow	VBZ
10_1101-2021_01_07_425794	83	61	A	a	DT
10_1101-2021_01_07_425794	83	62	≤	≤	NN
10_1101-2021_01_07_425794	83	63	C≤	c≤	NN
10_1101-2021_01_07_425794	83	64	D	D	NNP
10_1101-2021_01_07_425794	83	65	≤B	≤b	NN
10_1101-2021_01_07_425794	83	66	when	when	WRB
10_1101-2021_01_07_425794	83	67	its	-PRON-	PRP$
10_1101-2021_01_07_425794	83	68	expression	expression	NN
10_1101-2021_01_07_425794	83	69	in	in	IN
10_1101-2021_01_07_425794	83	70	sample	sample	NN
10_1101-2021_01_07_425794	83	71	A	A	NNP
10_1101-2021_01_07_425794	83	72	is	be	VBZ
10_1101-2021_01_07_425794	83	73	less	less	JJR
10_1101-2021_01_07_425794	83	74	than	than	IN
10_1101-2021_01_07_425794	83	75	or	or	CC
10_1101-2021_01_07_425794	83	76	equal	equal	JJ
10_1101-2021_01_07_425794	83	77	to	to	IN
10_1101-2021_01_07_425794	83	78	that	that	DT
10_1101-2021_01_07_425794	83	79	in	in	IN
10_1101-2021_01_07_425794	83	80	sample	sample	NN
10_1101-2021_01_07_425794	83	81	B.	B.	NNP
10_1101-2021_01_07_425794	84	1	To	to	TO
10_1101-2021_01_07_425794	84	2	test	test	VB
10_1101-2021_01_07_425794	84	3	if	if	IN
10_1101-2021_01_07_425794	84	4	the	the	DT
10_1101-2021_01_07_425794	84	5	titration	titration	NN
10_1101-2021_01_07_425794	84	6	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	84	7	is	be	VBZ
10_1101-2021_01_07_425794	84	8	preserved	preserve	VBN
10_1101-2021_01_07_425794	84	9	,	,	,
10_1101-2021_01_07_425794	84	10	Equation	Equation	NNP
10_1101-2021_01_07_425794	84	11	(	(	-LRB-
10_1101-2021_01_07_425794	84	12	1	1	CD
10_1101-2021_01_07_425794	84	13	)	)	-RRB-
10_1101-2021_01_07_425794	84	14	was	be	VBD
10_1101-2021_01_07_425794	84	15	used	use	VBN
10_1101-2021_01_07_425794	84	16	to	to	TO
10_1101-2021_01_07_425794	84	17	compute	compute	VB
10_1101-2021_01_07_425794	84	18	the	the	DT
10_1101-2021_01_07_425794	84	19	expected	expect	VBN
10_1101-2021_01_07_425794	84	20	log2	log2	NN
10_1101-2021_01_07_425794	84	21	fold	fold	NN
10_1101-2021_01_07_425794	84	22	-	-	HYPH
10_1101-2021_01_07_425794	84	23	change	change	NN
10_1101-2021_01_07_425794	84	24	for	for	IN
10_1101-2021_01_07_425794	84	25	a	a	DT
10_1101-2021_01_07_425794	84	26	gene	gene	NN
10_1101-2021_01_07_425794	84	27	in	in	IN
10_1101-2021_01_07_425794	84	28	the	the	DT
10_1101-2021_01_07_425794	84	29	comparison	comparison	NN
10_1101-2021_01_07_425794	84	30	of	of	IN
10_1101-2021_01_07_425794	84	31	C	C	NNP
10_1101-2021_01_07_425794	84	32	vs	vs	IN
10_1101-2021_01_07_425794	84	33	D	D	NNP
10_1101-2021_01_07_425794	84	34	given	give	VBN
10_1101-2021_01_07_425794	84	35	the	the	DT
10_1101-2021_01_07_425794	84	36	log2	log2	NN
10_1101-2021_01_07_425794	84	37	fold	fold	NN
10_1101-2021_01_07_425794	84	38	-	-	HYPH
10_1101-2021_01_07_425794	84	39	change	change	NN
10_1101-2021_01_07_425794	84	40	between	between	IN
10_1101-2021_01_07_425794	84	41	A	A	NNP
10_1101-2021_01_07_425794	84	42	vs	vs	FW
10_1101-2021_01_07_425794	84	43	B.	B.	NNP
10_1101-2021_01_07_425794	84	44	E	e	NN
10_1101-2021_01_07_425794	84	45	=	=	SYM
10_1101-2021_01_07_425794	84	46	log2	log2	NN
10_1101-2021_01_07_425794	84	47	(	(	-LRB-
10_1101-2021_01_07_425794	84	48	3	3	CD
10_1101-2021_01_07_425794	84	49	×	×	CD
10_1101-2021_01_07_425794	84	50	2x	2x	CD
10_1101-2021_01_07_425794	84	51	+	+	SYM
10_1101-2021_01_07_425794	84	52	1	1	CD
10_1101-2021_01_07_425794	84	53	2x	2x	CD
10_1101-2021_01_07_425794	84	54	+	+	SYM
10_1101-2021_01_07_425794	84	55	3	3	CD
10_1101-2021_01_07_425794	84	56	)	)	-RRB-
10_1101-2021_01_07_425794	84	57	(	(	-LRB-
10_1101-2021_01_07_425794	84	58	1	1	LS
10_1101-2021_01_07_425794	84	59	)	)	-RRB-
10_1101-2021_01_07_425794	84	60	where	where	WRB
10_1101-2021_01_07_425794	84	61	E	e	NN
10_1101-2021_01_07_425794	84	62	is	be	VBZ
10_1101-2021_01_07_425794	84	63	the	the	DT
10_1101-2021_01_07_425794	84	64	expected	expected	JJ
10_1101-2021_01_07_425794	84	65	log2	log2	NN
10_1101-2021_01_07_425794	84	66	fold	fold	NN
10_1101-2021_01_07_425794	84	67	-	-	HYPH
10_1101-2021_01_07_425794	84	68	change	change	NN
10_1101-2021_01_07_425794	84	69	for	for	IN
10_1101-2021_01_07_425794	84	70	C	c	NN
10_1101-2021_01_07_425794	84	71	vs	vs	IN
10_1101-2021_01_07_425794	84	72	D	d	NN
10_1101-2021_01_07_425794	84	73	and	and	CC
10_1101-2021_01_07_425794	84	74	x	x	NNP
10_1101-2021_01_07_425794	84	75	is	be	VBZ
10_1101-2021_01_07_425794	84	76	the	the	DT
10_1101-2021_01_07_425794	84	77	log2	log2	NN
10_1101-2021_01_07_425794	84	78	fold	fold	NN
10_1101-2021_01_07_425794	84	79	-	-	HYPH
10_1101-2021_01_07_425794	84	80	change	change	NN
10_1101-2021_01_07_425794	84	81	for	for	IN
10_1101-2021_01_07_425794	84	82	A	a	NN
10_1101-2021_01_07_425794	84	83	vs	vs	IN
10_1101-2021_01_07_425794	84	84	B.	B.	NNP
10_1101-2021_01_07_425794	85	1	Expression	expression	NN
10_1101-2021_01_07_425794	85	2	levels	level	NNS
10_1101-2021_01_07_425794	85	3	of	of	IN
10_1101-2021_01_07_425794	85	4	genes	gene	NNS
10_1101-2021_01_07_425794	85	5	in	in	IN
10_1101-2021_01_07_425794	85	6	the	the	DT
10_1101-2021_01_07_425794	85	7	replicates	replicate	NNS
10_1101-2021_01_07_425794	85	8	of	of	IN
10_1101-2021_01_07_425794	85	9	the	the	DT
10_1101-2021_01_07_425794	85	10	same	same	JJ
10_1101-2021_01_07_425794	85	11	sample	sample	NN
10_1101-2021_01_07_425794	85	12	were	be	VBD
10_1101-2021_01_07_425794	85	13	averaged	average	VBN
10_1101-2021_01_07_425794	85	14	before	before	IN
10_1101-2021_01_07_425794	85	15	fold	fold	JJ
10_1101-2021_01_07_425794	85	16	change	change	NN
10_1101-2021_01_07_425794	85	17	of	of	IN
10_1101-2021_01_07_425794	85	18	gene	gene	NN
10_1101-2021_01_07_425794	85	19	expression	expression	NN
10_1101-2021_01_07_425794	85	20	was	be	VBD
10_1101-2021_01_07_425794	85	21	calculated	calculate	VBN
10_1101-2021_01_07_425794	85	22	between	between	IN
10_1101-2021_01_07_425794	85	23	samples	sample	NNS
10_1101-2021_01_07_425794	85	24	.	.	.
10_1101-2021_01_07_425794	86	1	2.5	2.5	CD
10_1101-2021_01_07_425794	86	2	Validation	validation	NN
10_1101-2021_01_07_425794	86	3	Gene	Gene	NNP
10_1101-2021_01_07_425794	86	4	expression	expression	NN
10_1101-2021_01_07_425794	86	5	data	datum	NNS
10_1101-2021_01_07_425794	86	6	generated	generate	VBN
10_1101-2021_01_07_425794	86	7	using	use	VBG
10_1101-2021_01_07_425794	86	8	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	86	9	RT	RT	NNP
10_1101-2021_01_07_425794	86	10	-	-	HYPH
10_1101-2021_01_07_425794	86	11	PCR	PCR	NNP
10_1101-2021_01_07_425794	86	12	and	and	CC
10_1101-2021_01_07_425794	86	13	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	86	14	’s	’s	,
10_1101-2021_01_07_425794	86	15	BeadChip	BeadChip	NNP
10_1101-2021_01_07_425794	86	16	mi-	mi-	XX
10_1101-2021_01_07_425794	86	17	croarray	croarray	NN
10_1101-2021_01_07_425794	86	18	were	be	VBD
10_1101-2021_01_07_425794	86	19	used	use	VBN
10_1101-2021_01_07_425794	86	20	to	to	TO
10_1101-2021_01_07_425794	86	21	validate	validate	VB
10_1101-2021_01_07_425794	86	22	the	the	DT
10_1101-2021_01_07_425794	86	23	gene	gene	NN
10_1101-2021_01_07_425794	86	24	-	-	HYPH
10_1101-2021_01_07_425794	86	25	level	level	NN
10_1101-2021_01_07_425794	86	26	quantification	quantification	NN
10_1101-2021_01_07_425794	86	27	results	result	NNS
10_1101-2021_01_07_425794	86	28	from	from	IN
10_1101-2021_01_07_425794	86	29	the	the	DT
10_1101-2021_01_07_425794	86	30	RNA	RNA	NNP
10_1101-2021_01_07_425794	86	31	-	-	HYPH
10_1101-2021_01_07_425794	86	32	seq	seq	NN
10_1101-2021_01_07_425794	86	33	analysis	analysis	NN
10_1101-2021_01_07_425794	86	34	.	.	.
10_1101-2021_01_07_425794	87	1	Pearson	pearson	JJ
10_1101-2021_01_07_425794	87	2	correlation	correlation	NN
10_1101-2021_01_07_425794	87	3	coefficients	coefficient	NNS
10_1101-2021_01_07_425794	87	4	were	be	VBD
10_1101-2021_01_07_425794	87	5	computed	compute	VBN
10_1101-2021_01_07_425794	87	6	to	to	TO
10_1101-2021_01_07_425794	87	7	assess	assess	VB
10_1101-2021_01_07_425794	87	8	the	the	DT
10_1101-2021_01_07_425794	87	9	concordance	concordance	NN
10_1101-2021_01_07_425794	87	10	be-	be-	XX
10_1101-2021_01_07_425794	87	11	tween	tween	NN
10_1101-2021_01_07_425794	87	12	the	the	DT
10_1101-2021_01_07_425794	87	13	RNA	RNA	NNP
10_1101-2021_01_07_425794	87	14	-	-	HYPH
10_1101-2021_01_07_425794	87	15	seq	seq	NN
10_1101-2021_01_07_425794	87	16	quantification	quantification	NN
10_1101-2021_01_07_425794	87	17	data	datum	NNS
10_1101-2021_01_07_425794	87	18	obtained	obtain	VBN
10_1101-2021_01_07_425794	87	19	from	from	IN
10_1101-2021_01_07_425794	87	20	using	use	VBG
10_1101-2021_01_07_425794	87	21	different	different	JJ
10_1101-2021_01_07_425794	87	22	annotations	annotation	NNS
10_1101-2021_01_07_425794	87	23	and	and	CC
10_1101-2021_01_07_425794	87	24	the	the	DT
10_1101-2021_01_07_425794	87	25	gene	gene	NN
10_1101-2021_01_07_425794	87	26	expression	expression	NN
10_1101-2021_01_07_425794	87	27	data	datum	NNS
10_1101-2021_01_07_425794	87	28	obtained	obtain	VBN
10_1101-2021_01_07_425794	87	29	from	from	IN
10_1101-2021_01_07_425794	87	30	the	the	DT
10_1101-2021_01_07_425794	87	31	RT	RT	NNP
10_1101-2021_01_07_425794	87	32	-	-	HYPH
10_1101-2021_01_07_425794	87	33	PCR	PCR	NNP
10_1101-2021_01_07_425794	87	34	and	and	CC
10_1101-2021_01_07_425794	87	35	microarray	microarray	JJ
10_1101-2021_01_07_425794	87	36	experiments	experiment	NNS
10_1101-2021_01_07_425794	87	37	.	.	.
10_1101-2021_01_07_425794	88	1	The	the	DT
10_1101-2021_01_07_425794	88	2	genome	genome	NN
10_1101-2021_01_07_425794	88	3	-	-	HYPH
10_1101-2021_01_07_425794	88	4	wide	wide	JJ
10_1101-2021_01_07_425794	88	5	built	build	VBN
10_1101-2021_01_07_425794	88	6	-	-	HYPH
10_1101-2021_01_07_425794	88	7	in	in	RP
10_1101-2021_01_07_425794	88	8	truth	truth	NN
10_1101-2021_01_07_425794	88	9	of	of	IN
10_1101-2021_01_07_425794	88	10	titration	titration	NN
10_1101-2021_01_07_425794	88	11	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	88	12	of	of	IN
10_1101-2021_01_07_425794	88	13	gene	gene	NN
10_1101-2021_01_07_425794	88	14	expression	expression	NN
10_1101-2021_01_07_425794	88	15	in	in	IN
10_1101-2021_01_07_425794	88	16	the	the	DT
10_1101-2021_01_07_425794	88	17	RNA	RNA	NNP
10_1101-2021_01_07_425794	88	18	-	-	HYPH
10_1101-2021_01_07_425794	88	19	seq	seq	NN
10_1101-2021_01_07_425794	88	20	data	datum	NNS
10_1101-2021_01_07_425794	88	21	was	be	VBD
10_1101-2021_01_07_425794	88	22	also	also	RB
10_1101-2021_01_07_425794	88	23	utilized	utilize	VBN
10_1101-2021_01_07_425794	88	24	to	to	TO
10_1101-2021_01_07_425794	88	25	evaluate	evaluate	VB
10_1101-2021_01_07_425794	88	26	the	the	DT
10_1101-2021_01_07_425794	88	27	quantification	quantification	NN
10_1101-2021_01_07_425794	88	28	accuracy	accuracy	NN
10_1101-2021_01_07_425794	88	29	of	of	IN
10_1101-2021_01_07_425794	88	30	RNA	RNA	NNP
10_1101-2021_01_07_425794	88	31	-	-	HYPH
10_1101-2021_01_07_425794	88	32	seq	seq	NN
10_1101-2021_01_07_425794	88	33	data	datum	NNS
10_1101-2021_01_07_425794	88	34	generated	generate	VBN
10_1101-2021_01_07_425794	88	35	from	from	IN
10_1101-2021_01_07_425794	88	36	using	use	VBG
10_1101-2021_01_07_425794	88	37	different	different	JJ
10_1101-2021_01_07_425794	88	38	annotations	annotation	NNS
10_1101-2021_01_07_425794	88	39	.	.	.
10_1101-2021_01_07_425794	89	1	2.6	2.6	CD
10_1101-2021_01_07_425794	89	2	Access	Access	NNP
10_1101-2021_01_07_425794	89	3	to	to	IN
10_1101-2021_01_07_425794	89	4	data	datum	NNS
10_1101-2021_01_07_425794	89	5	and	and	CC
10_1101-2021_01_07_425794	89	6	code	code	NN
10_1101-2021_01_07_425794	89	7	The	the	DT
10_1101-2021_01_07_425794	89	8	data	datum	NNS
10_1101-2021_01_07_425794	89	9	and	and	CC
10_1101-2021_01_07_425794	89	10	analysis	analysis	NN
10_1101-2021_01_07_425794	89	11	code	code	NN
10_1101-2021_01_07_425794	89	12	used	use	VBN
10_1101-2021_01_07_425794	89	13	in	in	IN
10_1101-2021_01_07_425794	89	14	this	this	DT
10_1101-2021_01_07_425794	89	15	study	study	NN
10_1101-2021_01_07_425794	89	16	can	can	MD
10_1101-2021_01_07_425794	89	17	be	be	VB
10_1101-2021_01_07_425794	89	18	accessed	access	VBN
10_1101-2021_01_07_425794	89	19	at	at	IN
10_1101-2021_01_07_425794	89	20	the	the	DT
10_1101-2021_01_07_425794	89	21	following	following	JJ
10_1101-2021_01_07_425794	89	22	URL	url	NN
10_1101-2021_01_07_425794	89	23	:	:	:
10_1101-2021_01_07_425794	89	24	https://github.com/ShiLab-Bioinformatics/GeneAnnotation	https://github.com/shilab-bioinformatics/geneannotation	NN
10_1101-2021_01_07_425794	89	25	.	.	.
10_1101-2021_01_07_425794	90	1	6	6	CD
10_1101-2021_01_07_425794	90	2	.CC	.CC	:
10_1101-2021_01_07_425794	90	3	-	-	HYPH
10_1101-2021_01_07_425794	90	4	BY	by	IN
10_1101-2021_01_07_425794	90	5	-	-	HYPH
10_1101-2021_01_07_425794	90	6	NC	NC	NNP
10_1101-2021_01_07_425794	90	7	-	-	HYPH
10_1101-2021_01_07_425794	90	8	ND	ND	NNP
10_1101-2021_01_07_425794	90	9	4.0	4.0	CD
10_1101-2021_01_07_425794	90	10	International	international	JJ
10_1101-2021_01_07_425794	90	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	90	12	available	available	JJ
10_1101-2021_01_07_425794	90	13	under	under	IN
10_1101-2021_01_07_425794	90	14	a	a	DT
10_1101-2021_01_07_425794	90	15	(	(	-LRB-
10_1101-2021_01_07_425794	90	16	which	which	WDT
10_1101-2021_01_07_425794	90	17	was	be	VBD
10_1101-2021_01_07_425794	90	18	not	not	RB
10_1101-2021_01_07_425794	90	19	certified	certify	VBN
10_1101-2021_01_07_425794	90	20	by	by	IN
10_1101-2021_01_07_425794	90	21	peer	peer	NN
10_1101-2021_01_07_425794	90	22	review	review	NN
10_1101-2021_01_07_425794	90	23	)	)	-RRB-
10_1101-2021_01_07_425794	90	24	is	be	VBZ
10_1101-2021_01_07_425794	90	25	the	the	DT
10_1101-2021_01_07_425794	90	26	author	author	NN
10_1101-2021_01_07_425794	90	27	/	/	SYM
10_1101-2021_01_07_425794	90	28	funder	funder	NN
10_1101-2021_01_07_425794	90	29	,	,	,
10_1101-2021_01_07_425794	90	30	who	who	WP
10_1101-2021_01_07_425794	90	31	has	have	VBZ
10_1101-2021_01_07_425794	90	32	granted	grant	VBN
10_1101-2021_01_07_425794	90	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	90	34	a	a	DT
10_1101-2021_01_07_425794	90	35	license	license	NN
10_1101-2021_01_07_425794	90	36	to	to	TO
10_1101-2021_01_07_425794	90	37	display	display	VB
10_1101-2021_01_07_425794	90	38	the	the	DT
10_1101-2021_01_07_425794	90	39	preprint	preprint	NN
10_1101-2021_01_07_425794	90	40	in	in	IN
10_1101-2021_01_07_425794	90	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	90	42	.	.	.
10_1101-2021_01_07_425794	91	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	91	2	is	be	VBZ
10_1101-2021_01_07_425794	91	3	The	the	DT
10_1101-2021_01_07_425794	91	4	copyright	copyright	NN
10_1101-2021_01_07_425794	91	5	holder	holder	NN
10_1101-2021_01_07_425794	91	6	for	for	IN
10_1101-2021_01_07_425794	91	7	this	this	DT
10_1101-2021_01_07_425794	91	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	91	9	version	version	NN
10_1101-2021_01_07_425794	91	10	posted	post	VBD
10_1101-2021_01_07_425794	91	11	January	January	NNP
10_1101-2021_01_07_425794	91	12	8	8	CD
10_1101-2021_01_07_425794	91	13	,	,	,
10_1101-2021_01_07_425794	91	14	2021	2021	CD
10_1101-2021_01_07_425794	91	15	.	.	.
10_1101-2021_01_07_425794	91	16	;	;	:
10_1101-2021_01_07_425794	91	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	91	18	:	:	:
10_1101-2021_01_07_425794	91	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	91	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	91	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	91	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	91	23	3	3	CD
10_1101-2021_01_07_425794	91	24	RESULTS	RESULTS	NNP
10_1101-2021_01_07_425794	91	25	3.1	3.1	CD
10_1101-2021_01_07_425794	91	26	Discrepancy	discrepancy	NN
10_1101-2021_01_07_425794	91	27	between	between	IN
10_1101-2021_01_07_425794	91	28	different	different	JJ
10_1101-2021_01_07_425794	91	29	gene	gene	NN
10_1101-2021_01_07_425794	91	30	annotations	annotation	NNS
10_1101-2021_01_07_425794	91	31	The	the	DT
10_1101-2021_01_07_425794	91	32	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	91	33	and	and	CC
10_1101-2021_01_07_425794	91	34	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	91	35	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	91	36	annotations	annotation	NNS
10_1101-2021_01_07_425794	91	37	are	be	VBP
10_1101-2021_01_07_425794	91	38	among	among	IN
10_1101-2021_01_07_425794	91	39	the	the	DT
10_1101-2021_01_07_425794	91	40	most	most	RBS
10_1101-2021_01_07_425794	91	41	widely	widely	RB
10_1101-2021_01_07_425794	91	42	used	use	VBN
10_1101-2021_01_07_425794	91	43	gene	gene	NN
10_1101-2021_01_07_425794	91	44	anno-	anno-	NN
10_1101-2021_01_07_425794	91	45	tations	tation	NNS
10_1101-2021_01_07_425794	91	46	that	that	WDT
10_1101-2021_01_07_425794	91	47	have	have	VBP
10_1101-2021_01_07_425794	91	48	been	be	VBN
10_1101-2021_01_07_425794	91	49	utilized	utilize	VBN
10_1101-2021_01_07_425794	91	50	for	for	IN
10_1101-2021_01_07_425794	91	51	RNA	RNA	NNP
10_1101-2021_01_07_425794	91	52	-	-	HYPH
10_1101-2021_01_07_425794	91	53	seq	seq	NN
10_1101-2021_01_07_425794	91	54	gene	gene	NN
10_1101-2021_01_07_425794	91	55	expression	expression	NN
10_1101-2021_01_07_425794	91	56	quantification	quantification	NN
10_1101-2021_01_07_425794	91	57	in	in	IN
10_1101-2021_01_07_425794	91	58	the	the	DT
10_1101-2021_01_07_425794	91	59	field	field	NN
10_1101-2021_01_07_425794	91	60	.	.	.
10_1101-2021_01_07_425794	92	1	In	in	IN
10_1101-2021_01_07_425794	92	2	this	this	DT
10_1101-2021_01_07_425794	92	3	study	study	NN
10_1101-2021_01_07_425794	92	4	,	,	,
10_1101-2021_01_07_425794	92	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	92	6	downloaded	download	VBD
10_1101-2021_01_07_425794	92	7	recent	recent	JJ
10_1101-2021_01_07_425794	92	8	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	92	9	and	and	CC
10_1101-2021_01_07_425794	92	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	92	11	annotations	annotation	NNS
10_1101-2021_01_07_425794	92	12	and	and	CC
10_1101-2021_01_07_425794	92	13	also	also	RB
10_1101-2021_01_07_425794	92	14	used	use	VBD
10_1101-2021_01_07_425794	92	15	an	an	DT
10_1101-2021_01_07_425794	92	16	older	old	JJR
10_1101-2021_01_07_425794	92	17	version	version	NN
10_1101-2021_01_07_425794	92	18	of	of	IN
10_1101-2021_01_07_425794	92	19	Refseq	Refseq	NNP
10_1101-2021_01_07_425794	92	20	annotation	annotation	NN
10_1101-2021_01_07_425794	92	21	to	to	TO
10_1101-2021_01_07_425794	92	22	assess	assess	VB
10_1101-2021_01_07_425794	92	23	the	the	DT
10_1101-2021_01_07_425794	92	24	impact	impact	NN
10_1101-2021_01_07_425794	92	25	of	of	IN
10_1101-2021_01_07_425794	92	26	gene	gene	NN
10_1101-2021_01_07_425794	92	27	annotation	annotation	NN
10_1101-2021_01_07_425794	92	28	choice	choice	NN
10_1101-2021_01_07_425794	92	29	on	on	IN
10_1101-2021_01_07_425794	92	30	the	the	DT
10_1101-2021_01_07_425794	92	31	accuracy	accuracy	NN
10_1101-2021_01_07_425794	92	32	of	of	IN
10_1101-2021_01_07_425794	92	33	RNA	RNA	NNP
10_1101-2021_01_07_425794	92	34	-	-	HYPH
10_1101-2021_01_07_425794	92	35	seq	seq	NN
10_1101-2021_01_07_425794	92	36	expression	expression	NN
10_1101-2021_01_07_425794	92	37	quantification	quantification	NN
10_1101-2021_01_07_425794	92	38	.	.	.
10_1101-2021_01_07_425794	93	1	The	the	DT
10_1101-2021_01_07_425794	93	2	inclusion	inclusion	NN
10_1101-2021_01_07_425794	93	3	of	of	IN
10_1101-2021_01_07_425794	93	4	an	an	DT
10_1101-2021_01_07_425794	93	5	older	old	JJR
10_1101-2021_01_07_425794	93	6	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	93	7	annotation	annotation	NN
10_1101-2021_01_07_425794	93	8	allowed	allow	VBD
10_1101-2021_01_07_425794	93	9	us	-PRON-	PRP
10_1101-2021_01_07_425794	93	10	to	to	TO
10_1101-2021_01_07_425794	93	11	investigate	investigate	VB
10_1101-2021_01_07_425794	93	12	the	the	DT
10_1101-2021_01_07_425794	93	13	accuracy	accuracy	NN
10_1101-2021_01_07_425794	93	14	of	of	IN
10_1101-2021_01_07_425794	93	15	new	new	JJ
10_1101-2021_01_07_425794	93	16	annotation	annotation	NN
10_1101-2021_01_07_425794	93	17	data	datum	NNS
10_1101-2021_01_07_425794	93	18	generated	generate	VBN
10_1101-2021_01_07_425794	93	19	in	in	IN
10_1101-2021_01_07_425794	93	20	recent	recent	JJ
10_1101-2021_01_07_425794	93	21	years	year	NNS
10_1101-2021_01_07_425794	93	22	when	when	WRB
10_1101-2021_01_07_425794	93	23	the	the	DT
10_1101-2021_01_07_425794	93	24	next	next	JJ
10_1101-2021_01_07_425794	93	25	-	-	HYPH
10_1101-2021_01_07_425794	93	26	gen	gen	NNP
10_1101-2021_01_07_425794	93	27	sequencing	sequencing	NNP
10_1101-2021_01_07_425794	93	28	data	datum	NNS
10_1101-2021_01_07_425794	93	29	have	have	VBP
10_1101-2021_01_07_425794	93	30	been	be	VBN
10_1101-2021_01_07_425794	93	31	used	use	VBN
10_1101-2021_01_07_425794	93	32	as	as	IN
10_1101-2021_01_07_425794	93	33	a	a	DT
10_1101-2021_01_07_425794	93	34	new	new	JJ
10_1101-2021_01_07_425794	93	35	data	data	NN
10_1101-2021_01_07_425794	93	36	source	source	NN
10_1101-2021_01_07_425794	93	37	for	for	IN
10_1101-2021_01_07_425794	93	38	genome	genome	NN
10_1101-2021_01_07_425794	93	39	-	-	HYPH
10_1101-2021_01_07_425794	93	40	wide	wide	JJ
10_1101-2021_01_07_425794	93	41	annotation	annotation	NN
10_1101-2021_01_07_425794	93	42	generation	generation	NN
10_1101-2021_01_07_425794	93	43	.	.	.
10_1101-2021_01_07_425794	94	1	The	the	DT
10_1101-2021_01_07_425794	94	2	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	94	3	annotation	annotation	NN
10_1101-2021_01_07_425794	94	4	used	use	VBN
10_1101-2021_01_07_425794	94	5	in	in	IN
10_1101-2021_01_07_425794	94	6	this	this	DT
10_1101-2021_01_07_425794	94	7	study	study	NN
10_1101-2021_01_07_425794	94	8	was	be	VBD
10_1101-2021_01_07_425794	94	9	released	release	VBN
10_1101-2021_01_07_425794	94	10	in	in	IN
10_1101-2021_01_07_425794	94	11	April	April	NNP
10_1101-2021_01_07_425794	94	12	2020	2020	CD
10_1101-2021_01_07_425794	94	13	and	and	CC
10_1101-2021_01_07_425794	94	14	it	-PRON-	PRP
10_1101-2021_01_07_425794	94	15	has	have	VBZ
10_1101-2021_01_07_425794	94	16	a	a	DT
10_1101-2021_01_07_425794	94	17	version	version	NN
10_1101-2021_01_07_425794	94	18	number	number	NN
10_1101-2021_01_07_425794	94	19	100	100	CD
10_1101-2021_01_07_425794	94	20	.	.	.
10_1101-2021_01_07_425794	95	1	The	the	DT
10_1101-2021_01_07_425794	95	2	recent	recent	JJ
10_1101-2021_01_07_425794	95	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	95	4	annotation	annotation	NN
10_1101-2021_01_07_425794	95	5	included	include	VBN
10_1101-2021_01_07_425794	95	6	in	in	IN
10_1101-2021_01_07_425794	95	7	this	this	DT
10_1101-2021_01_07_425794	95	8	study	study	NN
10_1101-2021_01_07_425794	95	9	was	be	VBD
10_1101-2021_01_07_425794	95	10	released	release	VBN
10_1101-2021_01_07_425794	95	11	in	in	IN
10_1101-2021_01_07_425794	95	12	August	August	NNP
10_1101-2021_01_07_425794	95	13	2020	2020	CD
10_1101-2021_01_07_425794	95	14	.	.	.
10_1101-2021_01_07_425794	96	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	96	2	call	call	VBP
10_1101-2021_01_07_425794	96	3	this	this	DT
10_1101-2021_01_07_425794	96	4	annotation	annotation	NN
10_1101-2021_01_07_425794	96	5	as	as	IN
10_1101-2021_01_07_425794	96	6	‘	'	``
10_1101-2021_01_07_425794	96	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	96	8	-	-	HYPH
10_1101-2021_01_07_425794	96	9	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	96	10	’	'	''
10_1101-2021_01_07_425794	96	11	in	in	IN
10_1101-2021_01_07_425794	96	12	this	this	DT
10_1101-2021_01_07_425794	96	13	study	study	NN
10_1101-2021_01_07_425794	96	14	.	.	.
10_1101-2021_01_07_425794	97	1	The	the	DT
10_1101-2021_01_07_425794	97	2	older	old	JJR
10_1101-2021_01_07_425794	97	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	97	4	annotation	annotation	NN
10_1101-2021_01_07_425794	97	5	was	be	VBD
10_1101-2021_01_07_425794	97	6	released	release	VBN
10_1101-2021_01_07_425794	97	7	in	in	IN
10_1101-2021_01_07_425794	97	8	April	April	NNP
10_1101-2021_01_07_425794	97	9	2015	2015	CD
10_1101-2021_01_07_425794	97	10	,	,	,
10_1101-2021_01_07_425794	97	11	and	and	CC
10_1101-2021_01_07_425794	97	12	it	-PRON-	PRP
10_1101-2021_01_07_425794	97	13	has	have	VBZ
10_1101-2021_01_07_425794	97	14	also	also	RB
10_1101-2021_01_07_425794	97	15	been	be	VBN
10_1101-2021_01_07_425794	97	16	included	include	VBN
10_1101-2021_01_07_425794	97	17	as	as	IN
10_1101-2021_01_07_425794	97	18	part	part	NN
10_1101-2021_01_07_425794	97	19	of	of	IN
10_1101-2021_01_07_425794	97	20	the	the	DT
10_1101-2021_01_07_425794	97	21	popular	popular	JJ
10_1101-2021_01_07_425794	97	22	RNA	RNA	NNP
10_1101-2021_01_07_425794	97	23	-	-	HYPH
10_1101-2021_01_07_425794	97	24	seq	seq	NN
10_1101-2021_01_07_425794	97	25	quantification	quantification	NN
10_1101-2021_01_07_425794	97	26	toolkit	toolkit	NNS
10_1101-2021_01_07_425794	97	27	‘	'	``
10_1101-2021_01_07_425794	97	28	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	97	29	’	'	''
10_1101-2021_01_07_425794	97	30	for	for	IN
10_1101-2021_01_07_425794	97	31	quantifying	quantify	VBG
10_1101-2021_01_07_425794	97	32	human	human	JJ
10_1101-2021_01_07_425794	97	33	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	97	34	seq	seq	NN
10_1101-2021_01_07_425794	97	35	data	datum	NNS
10_1101-2021_01_07_425794	97	36	.	.	.
10_1101-2021_01_07_425794	98	1	As	as	IN
10_1101-2021_01_07_425794	98	2	this	this	DT
10_1101-2021_01_07_425794	98	3	annotation	annotation	NN
10_1101-2021_01_07_425794	98	4	is	be	VBZ
10_1101-2021_01_07_425794	98	5	not	not	RB
10_1101-2021_01_07_425794	98	6	available	available	JJ
10_1101-2021_01_07_425794	98	7	in	in	IN
10_1101-2021_01_07_425794	98	8	the	the	DT
10_1101-2021_01_07_425794	98	9	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	98	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	98	11	database	database	NN
10_1101-2021_01_07_425794	98	12	anymore	anymore	RB
10_1101-2021_01_07_425794	98	13	,	,	,
10_1101-2021_01_07_425794	98	14	we	-PRON-	PRP
10_1101-2021_01_07_425794	98	15	instead	instead	RB
10_1101-2021_01_07_425794	98	16	used	use	VBD
10_1101-2021_01_07_425794	98	17	the	the	DT
10_1101-2021_01_07_425794	98	18	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	98	19	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	98	20	annotation	annotation	NN
10_1101-2021_01_07_425794	98	21	in	in	IN
10_1101-2021_01_07_425794	98	22	our	-PRON-	PRP$
10_1101-2021_01_07_425794	98	23	evaluations	evaluation	NNS
10_1101-2021_01_07_425794	98	24	and	and	CC
10_1101-2021_01_07_425794	98	25	we	-PRON-	PRP
10_1101-2021_01_07_425794	98	26	denote	denote	VBP
10_1101-2021_01_07_425794	98	27	this	this	DT
10_1101-2021_01_07_425794	98	28	annotation	annotation	NN
10_1101-2021_01_07_425794	98	29	as	as	IN
10_1101-2021_01_07_425794	98	30	‘	'	``
10_1101-2021_01_07_425794	98	31	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	98	32	-	-	HYPH
10_1101-2021_01_07_425794	98	33	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	98	34	’	'	''
10_1101-2021_01_07_425794	98	35	.	.	.
10_1101-2021_01_07_425794	99	1	As	as	IN
10_1101-2021_01_07_425794	99	2	RNA	RNA	NNP
10_1101-2021_01_07_425794	99	3	-	-	HYPH
10_1101-2021_01_07_425794	99	4	seq	seq	NN
10_1101-2021_01_07_425794	99	5	gene	gene	NN
10_1101-2021_01_07_425794	99	6	-	-	HYPH
10_1101-2021_01_07_425794	99	7	level	level	NN
10_1101-2021_01_07_425794	99	8	expression	expression	NN
10_1101-2021_01_07_425794	99	9	quantification	quantification	NN
10_1101-2021_01_07_425794	99	10	is	be	VBZ
10_1101-2021_01_07_425794	99	11	typically	typically	RB
10_1101-2021_01_07_425794	99	12	performed	perform	VBN
10_1101-2021_01_07_425794	99	13	for	for	IN
10_1101-2021_01_07_425794	99	14	genes	gene	NNS
10_1101-2021_01_07_425794	99	15	that	that	WDT
10_1101-2021_01_07_425794	99	16	contain	contain	VBP
10_1101-2021_01_07_425794	99	17	exons	exon	NNS
10_1101-2021_01_07_425794	99	18	[	[	-LRB-
10_1101-2021_01_07_425794	99	19	3	3	CD
10_1101-2021_01_07_425794	99	20	,	,	,
10_1101-2021_01_07_425794	99	21	4	4	CD
10_1101-2021_01_07_425794	99	22	,	,	,
10_1101-2021_01_07_425794	99	23	5	5	CD
10_1101-2021_01_07_425794	99	24	]	]	-RRB-
10_1101-2021_01_07_425794	99	25	,	,	,
10_1101-2021_01_07_425794	99	26	in	in	IN
10_1101-2021_01_07_425794	99	27	this	this	DT
10_1101-2021_01_07_425794	99	28	study	study	NN
10_1101-2021_01_07_425794	99	29	we	-PRON-	PRP
10_1101-2021_01_07_425794	99	30	only	only	RB
10_1101-2021_01_07_425794	99	31	focused	focus	VBD
10_1101-2021_01_07_425794	99	32	on	on	IN
10_1101-2021_01_07_425794	99	33	the	the	DT
10_1101-2021_01_07_425794	99	34	genes	gene	NNS
10_1101-2021_01_07_425794	99	35	that	that	WDT
10_1101-2021_01_07_425794	99	36	have	have	VBP
10_1101-2021_01_07_425794	99	37	annotated	annotate	VBN
10_1101-2021_01_07_425794	99	38	exons	exon	NNS
10_1101-2021_01_07_425794	99	39	in	in	IN
10_1101-2021_01_07_425794	99	40	each	each	DT
10_1101-2021_01_07_425794	99	41	annotation	annotation	NN
10_1101-2021_01_07_425794	99	42	.	.	.
10_1101-2021_01_07_425794	100	1	Figure	figure	NN
10_1101-2021_01_07_425794	100	2	1A	1a	NN
10_1101-2021_01_07_425794	100	3	shows	show	VBZ
10_1101-2021_01_07_425794	100	4	that	that	IN
10_1101-2021_01_07_425794	100	5	,	,	,
10_1101-2021_01_07_425794	100	6	as	as	IN
10_1101-2021_01_07_425794	100	7	expected	expect	VBN
10_1101-2021_01_07_425794	100	8	,	,	,
10_1101-2021_01_07_425794	100	9	the	the	DT
10_1101-2021_01_07_425794	100	10	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	100	11	annotation	annotation	NN
10_1101-2021_01_07_425794	100	12	contains	contain	VBZ
10_1101-2021_01_07_425794	100	13	a	a	DT
10_1101-2021_01_07_425794	100	14	lot	lot	NN
10_1101-2021_01_07_425794	100	15	more	more	RBR
10_1101-2021_01_07_425794	100	16	exon	exon	NN
10_1101-2021_01_07_425794	100	17	-	-	HYPH
10_1101-2021_01_07_425794	100	18	containing	contain	VBG
10_1101-2021_01_07_425794	100	19	genes	gene	NNS
10_1101-2021_01_07_425794	100	20	than	than	IN
10_1101-2021_01_07_425794	100	21	the	the	DT
10_1101-2021_01_07_425794	100	22	two	two	CD
10_1101-2021_01_07_425794	100	23	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	100	24	annotations	annotation	NNS
10_1101-2021_01_07_425794	100	25	.	.	.
10_1101-2021_01_07_425794	101	1	The	the	DT
10_1101-2021_01_07_425794	101	2	En-	en-	CD
10_1101-2021_01_07_425794	101	3	sembl	sembl	NN
10_1101-2021_01_07_425794	101	4	annotation	annotation	NN
10_1101-2021_01_07_425794	101	5	is	be	VBZ
10_1101-2021_01_07_425794	101	6	known	know	VBN
10_1101-2021_01_07_425794	101	7	to	to	TO
10_1101-2021_01_07_425794	101	8	contain	contain	VB
10_1101-2021_01_07_425794	101	9	a	a	DT
10_1101-2021_01_07_425794	101	10	large	large	JJ
10_1101-2021_01_07_425794	101	11	number	number	NN
10_1101-2021_01_07_425794	101	12	of	of	IN
10_1101-2021_01_07_425794	101	13	computationally	computationally	RB
10_1101-2021_01_07_425794	101	14	predicted	predict	VBN
10_1101-2021_01_07_425794	101	15	genes	gene	NNS
10_1101-2021_01_07_425794	101	16	whereas	whereas	IN
10_1101-2021_01_07_425794	101	17	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	101	18	genes	gene	NNS
10_1101-2021_01_07_425794	101	19	were	be	VBD
10_1101-2021_01_07_425794	101	20	mainly	mainly	RB
10_1101-2021_01_07_425794	101	21	annotated	annotate	VBN
10_1101-2021_01_07_425794	101	22	based	base	VBN
10_1101-2021_01_07_425794	101	23	on	on	IN
10_1101-2021_01_07_425794	101	24	the	the	DT
10_1101-2021_01_07_425794	101	25	biological	biological	JJ
10_1101-2021_01_07_425794	101	26	evidence	evidence	NN
10_1101-2021_01_07_425794	101	27	.	.	.
10_1101-2021_01_07_425794	102	1	However	however	RB
10_1101-2021_01_07_425794	102	2	,	,	,
10_1101-2021_01_07_425794	102	3	it	-PRON-	PRP
10_1101-2021_01_07_425794	102	4	is	be	VBZ
10_1101-2021_01_07_425794	102	5	worth	worth	JJ
10_1101-2021_01_07_425794	102	6	noting	note	VBG
10_1101-2021_01_07_425794	102	7	that	that	IN
10_1101-2021_01_07_425794	102	8	the	the	DT
10_1101-2021_01_07_425794	102	9	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	102	10	-	-	HYPH
10_1101-2021_01_07_425794	102	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	102	12	annotation	annotation	NN
10_1101-2021_01_07_425794	102	13	still	still	RB
10_1101-2021_01_07_425794	102	14	has	have	VBZ
10_1101-2021_01_07_425794	102	15	>	>	XX
10_1101-2021_01_07_425794	102	16	14,000	14,000	CD
10_1101-2021_01_07_425794	102	17	genes	gene	NNS
10_1101-2021_01_07_425794	102	18	that	that	WDT
10_1101-2021_01_07_425794	102	19	are	be	VBP
10_1101-2021_01_07_425794	102	20	not	not	RB
10_1101-2021_01_07_425794	102	21	included	include	VBN
10_1101-2021_01_07_425794	102	22	in	in	IN
10_1101-2021_01_07_425794	102	23	the	the	DT
10_1101-2021_01_07_425794	102	24	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	102	25	annotation	annotation	NN
10_1101-2021_01_07_425794	102	26	.	.	.
10_1101-2021_01_07_425794	103	1	Nearly	nearly	RB
10_1101-2021_01_07_425794	103	2	60	60	CD
10_1101-2021_01_07_425794	103	3	%	%	NN
10_1101-2021_01_07_425794	103	4	of	of	IN
10_1101-2021_01_07_425794	103	5	the	the	DT
10_1101-2021_01_07_425794	103	6	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	103	7	genes	gene	NNS
10_1101-2021_01_07_425794	103	8	were	be	VBD
10_1101-2021_01_07_425794	103	9	found	find	VBN
10_1101-2021_01_07_425794	103	10	to	to	TO
10_1101-2021_01_07_425794	103	11	be	be	VB
10_1101-2021_01_07_425794	103	12	absent	absent	JJ
10_1101-2021_01_07_425794	103	13	from	from	IN
10_1101-2021_01_07_425794	103	14	both	both	DT
10_1101-2021_01_07_425794	103	15	of	of	IN
10_1101-2021_01_07_425794	103	16	the	the	DT
10_1101-2021_01_07_425794	103	17	two	two	CD
10_1101-2021_01_07_425794	103	18	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	103	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	103	20	.	.	.
10_1101-2021_01_07_425794	104	1	In	in	IN
10_1101-2021_01_07_425794	104	2	total	total	JJ
10_1101-2021_01_07_425794	104	3	,	,	,
10_1101-2021_01_07_425794	104	4	23,424	23,424	CD
10_1101-2021_01_07_425794	104	5	common	common	JJ
10_1101-2021_01_07_425794	104	6	genes	gene	NNS
10_1101-2021_01_07_425794	104	7	were	be	VBD
10_1101-2021_01_07_425794	104	8	found	find	VBN
10_1101-2021_01_07_425794	104	9	between	between	IN
10_1101-2021_01_07_425794	104	10	the	the	DT
10_1101-2021_01_07_425794	104	11	three	three	CD
10_1101-2021_01_07_425794	104	12	annotations	annotation	NNS
10_1101-2021_01_07_425794	104	13	.	.	.
10_1101-2021_01_07_425794	105	1	Most	Most	JJS
10_1101-2021_01_07_425794	105	2	of	of	IN
10_1101-2021_01_07_425794	105	3	the	the	DT
10_1101-2021_01_07_425794	105	4	genes	gene	NNS
10_1101-2021_01_07_425794	105	5	included	include	VBN
10_1101-2021_01_07_425794	105	6	in	in	IN
10_1101-2021_01_07_425794	105	7	the	the	DT
10_1101-2021_01_07_425794	105	8	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	105	9	-	-	HYPH
10_1101-2021_01_07_425794	105	10	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	105	11	annotation	annotation	NN
10_1101-2021_01_07_425794	105	12	can	can	MD
10_1101-2021_01_07_425794	105	13	be	be	VB
10_1101-2021_01_07_425794	105	14	found	find	VBN
10_1101-2021_01_07_425794	105	15	in	in	IN
10_1101-2021_01_07_425794	105	16	the	the	DT
10_1101-2021_01_07_425794	105	17	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	105	18	-	-	HYPH
10_1101-2021_01_07_425794	105	19	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	105	20	or	or	CC
10_1101-2021_01_07_425794	105	21	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	105	22	annotations	annotation	NNS
10_1101-2021_01_07_425794	105	23	.	.	.
10_1101-2021_01_07_425794	106	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	106	2	then	then	RB
10_1101-2021_01_07_425794	106	3	examined	examine	VBD
10_1101-2021_01_07_425794	106	4	the	the	DT
10_1101-2021_01_07_425794	106	5	effective	effective	JJ
10_1101-2021_01_07_425794	106	6	gene	gene	NN
10_1101-2021_01_07_425794	106	7	lengths	length	NNS
10_1101-2021_01_07_425794	106	8	in	in	IN
10_1101-2021_01_07_425794	106	9	each	each	DT
10_1101-2021_01_07_425794	106	10	annotation	annotation	NN
10_1101-2021_01_07_425794	106	11	.	.	.
10_1101-2021_01_07_425794	107	1	The	the	DT
10_1101-2021_01_07_425794	107	2	effective	effective	JJ
10_1101-2021_01_07_425794	107	3	length	length	NN
10_1101-2021_01_07_425794	107	4	of	of	IN
10_1101-2021_01_07_425794	107	5	a	a	DT
10_1101-2021_01_07_425794	107	6	gene	gene	NN
10_1101-2021_01_07_425794	107	7	is	be	VBZ
10_1101-2021_01_07_425794	107	8	the	the	DT
10_1101-2021_01_07_425794	107	9	total	total	JJ
10_1101-2021_01_07_425794	107	10	number	number	NN
10_1101-2021_01_07_425794	107	11	of	of	IN
10_1101-2021_01_07_425794	107	12	unique	unique	JJ
10_1101-2021_01_07_425794	107	13	bases	basis	NNS
10_1101-2021_01_07_425794	107	14	included	include	VBN
10_1101-2021_01_07_425794	107	15	in	in	IN
10_1101-2021_01_07_425794	107	16	all	all	PDT
10_1101-2021_01_07_425794	107	17	the	the	DT
10_1101-2021_01_07_425794	107	18	exons	exon	NNS
10_1101-2021_01_07_425794	107	19	belonging	belong	VBG
10_1101-2021_01_07_425794	107	20	to	to	IN
10_1101-2021_01_07_425794	107	21	the	the	DT
10_1101-2021_01_07_425794	107	22	gene	gene	NN
10_1101-2021_01_07_425794	107	23	.	.	.
10_1101-2021_01_07_425794	108	1	Figure	figure	NN
10_1101-2021_01_07_425794	108	2	1B	1b	NN
10_1101-2021_01_07_425794	108	3	shows	show	VBZ
10_1101-2021_01_07_425794	108	4	the	the	DT
10_1101-2021_01_07_425794	108	5	distributions	distribution	NNS
10_1101-2021_01_07_425794	108	6	of	of	IN
10_1101-2021_01_07_425794	108	7	effective	effective	JJ
10_1101-2021_01_07_425794	108	8	lengths	length	NNS
10_1101-2021_01_07_425794	108	9	of	of	IN
10_1101-2021_01_07_425794	108	10	genes	gene	NNS
10_1101-2021_01_07_425794	108	11	in	in	IN
10_1101-2021_01_07_425794	108	12	the	the	DT
10_1101-2021_01_07_425794	108	13	three	three	CD
10_1101-2021_01_07_425794	108	14	annota-	annota-	JJ
10_1101-2021_01_07_425794	108	15	tions	tion	NNS
10_1101-2021_01_07_425794	108	16	.	.	.
10_1101-2021_01_07_425794	109	1	Around	around	IN
10_1101-2021_01_07_425794	109	2	half	half	NN
10_1101-2021_01_07_425794	109	3	of	of	IN
10_1101-2021_01_07_425794	109	4	the	the	DT
10_1101-2021_01_07_425794	109	5	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	109	6	genes	gene	NNS
10_1101-2021_01_07_425794	109	7	have	have	VBP
10_1101-2021_01_07_425794	109	8	an	an	DT
10_1101-2021_01_07_425794	109	9	effective	effective	JJ
10_1101-2021_01_07_425794	109	10	length	length	NN
10_1101-2021_01_07_425794	109	11	less	less	JJR
10_1101-2021_01_07_425794	109	12	than	than	IN
10_1101-2021_01_07_425794	109	13	1,000	1,000	CD
10_1101-2021_01_07_425794	109	14	bases	basis	NNS
10_1101-2021_01_07_425794	109	15	,	,	,
10_1101-2021_01_07_425794	109	16	whereas	whereas	IN
10_1101-2021_01_07_425794	109	17	in	in	IN
10_1101-2021_01_07_425794	109	18	the	the	DT
10_1101-2021_01_07_425794	109	19	two	two	CD
10_1101-2021_01_07_425794	109	20	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	109	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	109	22	only	only	RB
10_1101-2021_01_07_425794	109	23	∼25	∼25	VBP
10_1101-2021_01_07_425794	109	24	%	%	NN
10_1101-2021_01_07_425794	109	25	of	of	IN
10_1101-2021_01_07_425794	109	26	the	the	DT
10_1101-2021_01_07_425794	109	27	genes	gene	NNS
10_1101-2021_01_07_425794	109	28	are	be	VBP
10_1101-2021_01_07_425794	109	29	shorter	short	JJR
10_1101-2021_01_07_425794	109	30	than	than	IN
10_1101-2021_01_07_425794	109	31	1,000	1,000	CD
10_1101-2021_01_07_425794	109	32	bases	basis	NNS
10_1101-2021_01_07_425794	109	33	in	in	IN
10_1101-2021_01_07_425794	109	34	length	length	NN
10_1101-2021_01_07_425794	109	35	.	.	.
10_1101-2021_01_07_425794	110	1	The	the	DT
10_1101-2021_01_07_425794	110	2	median	median	JJ
10_1101-2021_01_07_425794	110	3	effective	effective	JJ
10_1101-2021_01_07_425794	110	4	gene	gene	NN
10_1101-2021_01_07_425794	110	5	lengths	length	NNS
10_1101-2021_01_07_425794	110	6	in	in	IN
10_1101-2021_01_07_425794	110	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	110	8	-	-	HYPH
10_1101-2021_01_07_425794	110	9	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	110	10	and	and	CC
10_1101-2021_01_07_425794	110	11	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	110	12	-	-	HYPH
10_1101-2021_01_07_425794	110	13	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	110	14	7	7	CD
10_1101-2021_01_07_425794	110	15	.CC	.cc	SYM
10_1101-2021_01_07_425794	110	16	-	-	HYPH
10_1101-2021_01_07_425794	110	17	BY	by	IN
10_1101-2021_01_07_425794	110	18	-	-	HYPH
10_1101-2021_01_07_425794	110	19	NC	NC	NNP
10_1101-2021_01_07_425794	110	20	-	-	HYPH
10_1101-2021_01_07_425794	110	21	ND	ND	NNP
10_1101-2021_01_07_425794	110	22	4.0	4.0	CD
10_1101-2021_01_07_425794	110	23	International	international	JJ
10_1101-2021_01_07_425794	110	24	licensemade	licensemade	NN
10_1101-2021_01_07_425794	110	25	available	available	JJ
10_1101-2021_01_07_425794	110	26	under	under	IN
10_1101-2021_01_07_425794	110	27	a	a	DT
10_1101-2021_01_07_425794	110	28	(	(	-LRB-
10_1101-2021_01_07_425794	110	29	which	which	WDT
10_1101-2021_01_07_425794	110	30	was	be	VBD
10_1101-2021_01_07_425794	110	31	not	not	RB
10_1101-2021_01_07_425794	110	32	certified	certify	VBN
10_1101-2021_01_07_425794	110	33	by	by	IN
10_1101-2021_01_07_425794	110	34	peer	peer	NN
10_1101-2021_01_07_425794	110	35	review	review	NN
10_1101-2021_01_07_425794	110	36	)	)	-RRB-
10_1101-2021_01_07_425794	110	37	is	be	VBZ
10_1101-2021_01_07_425794	110	38	the	the	DT
10_1101-2021_01_07_425794	110	39	author	author	NN
10_1101-2021_01_07_425794	110	40	/	/	SYM
10_1101-2021_01_07_425794	110	41	funder	funder	NN
10_1101-2021_01_07_425794	110	42	,	,	,
10_1101-2021_01_07_425794	110	43	who	who	WP
10_1101-2021_01_07_425794	110	44	has	have	VBZ
10_1101-2021_01_07_425794	110	45	granted	grant	VBN
10_1101-2021_01_07_425794	110	46	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	110	47	a	a	DT
10_1101-2021_01_07_425794	110	48	license	license	NN
10_1101-2021_01_07_425794	110	49	to	to	TO
10_1101-2021_01_07_425794	110	50	display	display	VB
10_1101-2021_01_07_425794	110	51	the	the	DT
10_1101-2021_01_07_425794	110	52	preprint	preprint	NN
10_1101-2021_01_07_425794	110	53	in	in	IN
10_1101-2021_01_07_425794	110	54	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	110	55	.	.	.
10_1101-2021_01_07_425794	111	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	111	2	is	be	VBZ
10_1101-2021_01_07_425794	111	3	The	the	DT
10_1101-2021_01_07_425794	111	4	copyright	copyright	NN
10_1101-2021_01_07_425794	111	5	holder	holder	NN
10_1101-2021_01_07_425794	111	6	for	for	IN
10_1101-2021_01_07_425794	111	7	this	this	DT
10_1101-2021_01_07_425794	111	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	111	9	version	version	NN
10_1101-2021_01_07_425794	111	10	posted	post	VBD
10_1101-2021_01_07_425794	111	11	January	January	NNP
10_1101-2021_01_07_425794	111	12	8	8	CD
10_1101-2021_01_07_425794	111	13	,	,	,
10_1101-2021_01_07_425794	111	14	2021	2021	CD
10_1101-2021_01_07_425794	111	15	.	.	.
10_1101-2021_01_07_425794	111	16	;	;	:
10_1101-2021_01_07_425794	111	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	111	18	:	:	:
10_1101-2021_01_07_425794	111	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	111	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	111	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	111	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	111	23	A	A	NNP
10_1101-2021_01_07_425794	111	24	B	B	NNP
10_1101-2021_01_07_425794	111	25	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	111	26	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	111	27	-	-	HYPH
10_1101-2021_01_07_425794	111	28	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	111	29	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	111	30	-	-	HYPH
10_1101-2021_01_07_425794	111	31	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	111	32	1,354	1,354	CD
10_1101-2021_01_07_425794	111	33	23,424	23,424	CD
10_1101-2021_01_07_425794	111	34	4,27820	4,27820	CD
10_1101-2021_01_07_425794	111	35	35,885	35,885	CD
10_1101-2021_01_07_425794	111	36	673	673	CD
10_1101-2021_01_07_425794	111	37	10,479	10,479	CD
10_1101-2021_01_07_425794	111	38	E	e	NN
10_1101-2021_01_07_425794	111	39	ns	ns	IN
10_1101-2021_01_07_425794	111	40	em	-PRON-	PRP
10_1101-2021_01_07_425794	111	41	bl	bl	NNP
10_1101-2021_01_07_425794	111	42	R	R	NNP
10_1101-2021_01_07_425794	111	43	ef	ef	NNP
10_1101-2021_01_07_425794	111	44	S	S	NNP
10_1101-2021_01_07_425794	111	45	eq	eq	NNP
10_1101-2021_01_07_425794	111	46	-R	-R	NNP
10_1101-2021_01_07_425794	111	47	su	su	NNP
10_1101-2021_01_07_425794	111	48	br	br	VBP
10_1101-2021_01_07_425794	111	49	ea	ea	NNP
10_1101-2021_01_07_425794	111	50	d	d	NNP
10_1101-2021_01_07_425794	111	51	Lo	Lo	NNP
10_1101-2021_01_07_425794	111	52	g2	g2	NNP
10_1101-2021_01_07_425794	111	53	ef	ef	NNP
10_1101-2021_01_07_425794	111	54	fe	fe	NNP
10_1101-2021_01_07_425794	111	55	ct	ct	NNP
10_1101-2021_01_07_425794	111	56	iv	iv	NNP
10_1101-2021_01_07_425794	111	57	e	e	NNP
10_1101-2021_01_07_425794	111	58	ge	ge	NNP
10_1101-2021_01_07_425794	111	59	ne	ne	NNP
10_1101-2021_01_07_425794	111	60	le	le	NNP
10_1101-2021_01_07_425794	111	61	ng	ng	PRP
10_1101-2021_01_07_425794	111	62	th	th	XX
10_1101-2021_01_07_425794	111	63	R	r	NN
10_1101-2021_01_07_425794	111	64	ef	ef	NNP
10_1101-2021_01_07_425794	111	65	S	S	NNP
10_1101-2021_01_07_425794	111	66	eq	eq	NNP
10_1101-2021_01_07_425794	111	67	-N	-n	NN
10_1101-2021_01_07_425794	111	68	C	C	NNP
10_1101-2021_01_07_425794	111	69	B	B	NNP
10_1101-2021_01_07_425794	111	70	I	i	NN
10_1101-2021_01_07_425794	111	71	E	e	NN
10_1101-2021_01_07_425794	111	72	ns	ns	IN
10_1101-2021_01_07_425794	111	73	em	-PRON-	PRP
10_1101-2021_01_07_425794	111	74	bl	bl	PRP
10_1101-2021_01_07_425794	111	75	vs	vs	IN
10_1101-2021_01_07_425794	111	76	R	R	NNP
10_1101-2021_01_07_425794	111	77	ef	ef	NNP
10_1101-2021_01_07_425794	111	78	S	S	NNP
10_1101-2021_01_07_425794	111	79	eq	eq	NNP
10_1101-2021_01_07_425794	111	80	-N	-n	NN
10_1101-2021_01_07_425794	111	81	C	C	NNP
10_1101-2021_01_07_425794	111	82	B	B	NNP
10_1101-2021_01_07_425794	111	83	I	i	NN
10_1101-2021_01_07_425794	111	84	E	e	NN
10_1101-2021_01_07_425794	111	85	ns	ns	IN
10_1101-2021_01_07_425794	111	86	em	-PRON-	PRP
10_1101-2021_01_07_425794	111	87	bl	bl	PRP
10_1101-2021_01_07_425794	111	88	vs	vs	IN
10_1101-2021_01_07_425794	111	89	R	R	NNP
10_1101-2021_01_07_425794	111	90	ef	ef	NNP
10_1101-2021_01_07_425794	111	91	S	S	NNP
10_1101-2021_01_07_425794	111	92	eq	eq	NNP
10_1101-2021_01_07_425794	111	93	-R	-R	NNP
10_1101-2021_01_07_425794	111	94	su	su	NNP
10_1101-2021_01_07_425794	111	95	br	br	VBP
10_1101-2021_01_07_425794	111	96	ea	ea	NNP
10_1101-2021_01_07_425794	111	97	d	d	NN
10_1101-2021_01_07_425794	111	98	R	r	NN
10_1101-2021_01_07_425794	111	99	ef	ef	NN
10_1101-2021_01_07_425794	111	100	S	S	NNP
10_1101-2021_01_07_425794	111	101	eq	eq	NNP
10_1101-2021_01_07_425794	111	102	-N	-n	NN
10_1101-2021_01_07_425794	111	103	C	C	NNP
10_1101-2021_01_07_425794	111	104	B	B	NNP
10_1101-2021_01_07_425794	111	105	I	I	NNP
10_1101-2021_01_07_425794	111	106	vs	vs	IN
10_1101-2021_01_07_425794	111	107	R	r	NN
10_1101-2021_01_07_425794	111	108	ef	ef	NNP
10_1101-2021_01_07_425794	111	109	S	S	NNP
10_1101-2021_01_07_425794	111	110	eq	eq	NNP
10_1101-2021_01_07_425794	111	111	-R	-R	NNP
10_1101-2021_01_07_425794	111	112	su	su	NNP
10_1101-2021_01_07_425794	111	113	br	br	VBP
10_1101-2021_01_07_425794	111	114	ea	ea	NNP
10_1101-2021_01_07_425794	111	115	d	d	NN
10_1101-2021_01_07_425794	111	116	D	d	JJ
10_1101-2021_01_07_425794	111	117	iff	iff	NN
10_1101-2021_01_07_425794	111	118	er	er	UH
10_1101-2021_01_07_425794	111	119	en	en	FW
10_1101-2021_01_07_425794	111	120	ce	ce	NNP
10_1101-2021_01_07_425794	111	121	in	in	IN
10_1101-2021_01_07_425794	111	122	lo	lo	NNP
10_1101-2021_01_07_425794	111	123	g2	g2	NNP
10_1101-2021_01_07_425794	111	124	ef	ef	NNP
10_1101-2021_01_07_425794	111	125	fe	fe	NNP
10_1101-2021_01_07_425794	111	126	ct	ct	NNP
10_1101-2021_01_07_425794	111	127	iv	iv	NNP
10_1101-2021_01_07_425794	111	128	e	e	NNP
10_1101-2021_01_07_425794	111	129	ge	ge	NNP
10_1101-2021_01_07_425794	111	130	ne	ne	NNP
10_1101-2021_01_07_425794	111	131	le	le	NNP
10_1101-2021_01_07_425794	111	132	ng	ng	PRP
10_1101-2021_01_07_425794	111	133	th	th	XX
10_1101-2021_01_07_425794	111	134	C	C	NNP
10_1101-2021_01_07_425794	111	135	To	to	TO
10_1101-2021_01_07_425794	111	136	ta	ta	NNP
10_1101-2021_01_07_425794	111	137	le	le	NNP
10_1101-2021_01_07_425794	111	138	ffe	ffe	NNP
10_1101-2021_01_07_425794	111	139	ct	ct	NNP
10_1101-2021_01_07_425794	111	140	iv	iv	NNP
10_1101-2021_01_07_425794	111	141	e	e	NNP
10_1101-2021_01_07_425794	111	142	ge	ge	NNP
10_1101-2021_01_07_425794	111	143	ne	ne	NNP
10_1101-2021_01_07_425794	111	144	le	le	NNP
10_1101-2021_01_07_425794	111	145	ng	ng	NNP
10_1101-2021_01_07_425794	111	146	th	th	FW
10_1101-2021_01_07_425794	111	147	s	s	NNP
10_1101-2021_01_07_425794	111	148	(	(	-LRB-
10_1101-2021_01_07_425794	111	149	x	x	SYM
10_1101-2021_01_07_425794	111	150	10	10	CD
10_1101-2021_01_07_425794	111	151	^6	^6	NNP
10_1101-2021_01_07_425794	111	152	)	)	-RRB-
10_1101-2021_01_07_425794	111	153	0	0	NFP
10_1101-2021_01_07_425794	111	154	50	50	CD
10_1101-2021_01_07_425794	111	155	100	100	CD
10_1101-2021_01_07_425794	111	156	150	150	CD
10_1101-2021_01_07_425794	111	157	E	E	NNS
10_1101-2021_01_07_425794	111	158	ns	ns	IN
10_1101-2021_01_07_425794	111	159	em	-PRON-	PRP
10_1101-2021_01_07_425794	111	160	bl	bl	NNP
10_1101-2021_01_07_425794	111	161	R	R	NNP
10_1101-2021_01_07_425794	111	162	ef	ef	NNP
10_1101-2021_01_07_425794	111	163	S	S	NNP
10_1101-2021_01_07_425794	111	164	eq	eq	NNP
10_1101-2021_01_07_425794	111	165	-R	-R	NNP
10_1101-2021_01_07_425794	111	166	su	su	NNP
10_1101-2021_01_07_425794	111	167	br	br	VBP
10_1101-2021_01_07_425794	111	168	ea	ea	NNP
10_1101-2021_01_07_425794	111	169	d	d	NN
10_1101-2021_01_07_425794	111	170	R	r	NN
10_1101-2021_01_07_425794	111	171	ef	ef	NN
10_1101-2021_01_07_425794	111	172	S	S	NNP
10_1101-2021_01_07_425794	111	173	eq	eq	NNP
10_1101-2021_01_07_425794	111	174	-N	-n	NN
10_1101-2021_01_07_425794	111	175	C	C	NNP
10_1101-2021_01_07_425794	111	176	B	B	NNP
10_1101-2021_01_07_425794	111	177	I	i	NN
10_1101-2021_01_07_425794	111	178	D	d	NN
10_1101-2021_01_07_425794	111	179	3	3	CD
10_1101-2021_01_07_425794	111	180	6	6	CD
10_1101-2021_01_07_425794	111	181	9	9	CD
10_1101-2021_01_07_425794	111	182	12	12	CD
10_1101-2021_01_07_425794	111	183	15	15	CD
10_1101-2021_01_07_425794	111	184	18	18	CD
10_1101-2021_01_07_425794	111	185	−4	−4	CD
10_1101-2021_01_07_425794	111	186	−2	−2	NNP
10_1101-2021_01_07_425794	111	187	0	0	CD
10_1101-2021_01_07_425794	111	188	2	2	CD
10_1101-2021_01_07_425794	111	189	4	4	CD
10_1101-2021_01_07_425794	111	190	6	6	CD
10_1101-2021_01_07_425794	111	191	Figure	figure	NN
10_1101-2021_01_07_425794	111	192	1	1	CD
10_1101-2021_01_07_425794	111	193	:	:	:
10_1101-2021_01_07_425794	111	194	Concordance	concordance	NN
10_1101-2021_01_07_425794	111	195	and	and	CC
10_1101-2021_01_07_425794	111	196	differences	difference	NNS
10_1101-2021_01_07_425794	111	197	between	between	IN
10_1101-2021_01_07_425794	111	198	gene	gene	NN
10_1101-2021_01_07_425794	111	199	annotations	annotation	NNS
10_1101-2021_01_07_425794	111	200	.	.	.
10_1101-2021_01_07_425794	112	1	(	(	-LRB-
10_1101-2021_01_07_425794	112	2	A	a	DT
10_1101-2021_01_07_425794	112	3	)	)	-RRB-
10_1101-2021_01_07_425794	112	4	Venn	Venn	NNP
10_1101-2021_01_07_425794	112	5	diagram	diagram	NN
10_1101-2021_01_07_425794	112	6	showing	show	VBG
10_1101-2021_01_07_425794	112	7	genes	gene	NNS
10_1101-2021_01_07_425794	112	8	that	that	WDT
10_1101-2021_01_07_425794	112	9	are	be	VBP
10_1101-2021_01_07_425794	112	10	common	common	JJ
10_1101-2021_01_07_425794	112	11	or	or	CC
10_1101-2021_01_07_425794	112	12	unique	unique	JJ
10_1101-2021_01_07_425794	112	13	in	in	IN
10_1101-2021_01_07_425794	112	14	the	the	DT
10_1101-2021_01_07_425794	112	15	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	112	16	,	,	,
10_1101-2021_01_07_425794	112	17	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	112	18	-	-	HYPH
10_1101-2021_01_07_425794	112	19	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	112	20	and	and	CC
10_1101-2021_01_07_425794	112	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	112	22	-	-	HYPH
10_1101-2021_01_07_425794	112	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	112	24	annotations	annotation	NNS
10_1101-2021_01_07_425794	112	25	.	.	.
10_1101-2021_01_07_425794	113	1	(	(	-LRB-
10_1101-2021_01_07_425794	113	2	B	b	NN
10_1101-2021_01_07_425794	113	3	)	)	-RRB-
10_1101-2021_01_07_425794	113	4	Boxplots	boxplot	NNS
10_1101-2021_01_07_425794	113	5	showing	show	VBG
10_1101-2021_01_07_425794	113	6	the	the	DT
10_1101-2021_01_07_425794	113	7	distribution	distribution	NN
10_1101-2021_01_07_425794	113	8	of	of	IN
10_1101-2021_01_07_425794	113	9	effective	effective	JJ
10_1101-2021_01_07_425794	113	10	gene	gene	NN
10_1101-2021_01_07_425794	113	11	lengths	length	NNS
10_1101-2021_01_07_425794	113	12	(	(	-LRB-
10_1101-2021_01_07_425794	113	13	log2	log2	NN
10_1101-2021_01_07_425794	113	14	scale	scale	NN
10_1101-2021_01_07_425794	113	15	)	)	-RRB-
10_1101-2021_01_07_425794	113	16	in	in	IN
10_1101-2021_01_07_425794	113	17	each	each	DT
10_1101-2021_01_07_425794	113	18	annotation	annotation	NN
10_1101-2021_01_07_425794	113	19	.	.	.
10_1101-2021_01_07_425794	114	1	(	(	-LRB-
10_1101-2021_01_07_425794	114	2	C	c	NN
10_1101-2021_01_07_425794	114	3	)	)	-RRB-
10_1101-2021_01_07_425794	114	4	Boxplots	boxplot	NNS
10_1101-2021_01_07_425794	114	5	showing	show	VBG
10_1101-2021_01_07_425794	114	6	the	the	DT
10_1101-2021_01_07_425794	114	7	differences	difference	NNS
10_1101-2021_01_07_425794	114	8	in	in	IN
10_1101-2021_01_07_425794	114	9	effective	effective	JJ
10_1101-2021_01_07_425794	114	10	lengths	length	NNS
10_1101-2021_01_07_425794	114	11	of	of	IN
10_1101-2021_01_07_425794	114	12	common	common	JJ
10_1101-2021_01_07_425794	114	13	genes	gene	NNS
10_1101-2021_01_07_425794	114	14	between	between	IN
10_1101-2021_01_07_425794	114	15	each	each	DT
10_1101-2021_01_07_425794	114	16	pair	pair	NN
10_1101-2021_01_07_425794	114	17	of	of	IN
10_1101-2021_01_07_425794	114	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	114	19	.	.	.
10_1101-2021_01_07_425794	115	1	Values	value	NNS
10_1101-2021_01_07_425794	115	2	shown	show	VBN
10_1101-2021_01_07_425794	115	3	in	in	IN
10_1101-2021_01_07_425794	115	4	the	the	DT
10_1101-2021_01_07_425794	115	5	plots	plot	NNS
10_1101-2021_01_07_425794	115	6	are	be	VBP
10_1101-2021_01_07_425794	115	7	the	the	DT
10_1101-2021_01_07_425794	115	8	ratio	ratio	NN
10_1101-2021_01_07_425794	115	9	of	of	IN
10_1101-2021_01_07_425794	115	10	effective	effective	JJ
10_1101-2021_01_07_425794	115	11	lengths	length	NNS
10_1101-2021_01_07_425794	115	12	of	of	IN
10_1101-2021_01_07_425794	115	13	the	the	DT
10_1101-2021_01_07_425794	115	14	same	same	JJ
10_1101-2021_01_07_425794	115	15	gene	gene	NN
10_1101-2021_01_07_425794	115	16	from	from	IN
10_1101-2021_01_07_425794	115	17	two	two	CD
10_1101-2021_01_07_425794	115	18	different	different	JJ
10_1101-2021_01_07_425794	115	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	115	20	(	(	-LRB-
10_1101-2021_01_07_425794	115	21	log2	log2	NNP
10_1101-2021_01_07_425794	115	22	scale	scale	NN
10_1101-2021_01_07_425794	115	23	)	)	-RRB-
10_1101-2021_01_07_425794	115	24	.	.	.
10_1101-2021_01_07_425794	116	1	(	(	-LRB-
10_1101-2021_01_07_425794	116	2	D	d	NN
10_1101-2021_01_07_425794	116	3	)	)	-RRB-
10_1101-2021_01_07_425794	116	4	The	the	DT
10_1101-2021_01_07_425794	116	5	size	size	NN
10_1101-2021_01_07_425794	116	6	of	of	IN
10_1101-2021_01_07_425794	116	7	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	116	8	calculated	calculate	VBN
10_1101-2021_01_07_425794	116	9	from	from	IN
10_1101-2021_01_07_425794	116	10	each	each	DT
10_1101-2021_01_07_425794	116	11	annotation	annotation	NN
10_1101-2021_01_07_425794	116	12	.	.	.
10_1101-2021_01_07_425794	117	1	Shown	show	VBN
10_1101-2021_01_07_425794	117	2	are	be	VBP
10_1101-2021_01_07_425794	117	3	the	the	DT
10_1101-2021_01_07_425794	117	4	sum	sum	NN
10_1101-2021_01_07_425794	117	5	of	of	IN
10_1101-2021_01_07_425794	117	6	effective	effective	JJ
10_1101-2021_01_07_425794	117	7	gene	gene	NN
10_1101-2021_01_07_425794	117	8	lengths	length	NNS
10_1101-2021_01_07_425794	117	9	in	in	IN
10_1101-2021_01_07_425794	117	10	each	each	DT
10_1101-2021_01_07_425794	117	11	annotation	annotation	NN
10_1101-2021_01_07_425794	117	12	.	.	.
10_1101-2021_01_07_425794	118	1	are	be	VBP
10_1101-2021_01_07_425794	118	2	∼3,000	∼3,000	CD
10_1101-2021_01_07_425794	118	3	bases	basis	NNS
10_1101-2021_01_07_425794	118	4	,	,	,
10_1101-2021_01_07_425794	118	5	which	which	WDT
10_1101-2021_01_07_425794	118	6	is	be	VBZ
10_1101-2021_01_07_425794	118	7	much	much	RB
10_1101-2021_01_07_425794	118	8	larger	large	JJR
10_1101-2021_01_07_425794	118	9	than	than	IN
10_1101-2021_01_07_425794	118	10	that	that	DT
10_1101-2021_01_07_425794	118	11	in	in	IN
10_1101-2021_01_07_425794	118	12	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	118	13	(	(	-LRB-
10_1101-2021_01_07_425794	118	14	∼1,000	∼1,000	CD
10_1101-2021_01_07_425794	118	15	bases	basis	NNS
10_1101-2021_01_07_425794	118	16	)	)	-RRB-
10_1101-2021_01_07_425794	118	17	.	.	.
10_1101-2021_01_07_425794	119	1	Although	although	IN
10_1101-2021_01_07_425794	119	2	the	the	DT
10_1101-2021_01_07_425794	119	3	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	119	4	annotation	annotation	NN
10_1101-2021_01_07_425794	119	5	contains	contain	VBZ
10_1101-2021_01_07_425794	119	6	a	a	DT
10_1101-2021_01_07_425794	119	7	lot	lot	NN
10_1101-2021_01_07_425794	119	8	more	more	JJR
10_1101-2021_01_07_425794	119	9	genes	gene	NNS
10_1101-2021_01_07_425794	119	10	than	than	IN
10_1101-2021_01_07_425794	119	11	the	the	DT
10_1101-2021_01_07_425794	119	12	two	two	CD
10_1101-2021_01_07_425794	119	13	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	119	14	annotations	annotation	NNS
10_1101-2021_01_07_425794	119	15	,	,	,
10_1101-2021_01_07_425794	119	16	it	-PRON-	PRP
10_1101-2021_01_07_425794	119	17	also	also	RB
10_1101-2021_01_07_425794	119	18	contains	contain	VBZ
10_1101-2021_01_07_425794	119	19	a	a	DT
10_1101-2021_01_07_425794	119	20	much	much	RB
10_1101-2021_01_07_425794	119	21	higher	high	JJR
10_1101-2021_01_07_425794	119	22	percentage	percentage	NN
10_1101-2021_01_07_425794	119	23	of	of	IN
10_1101-2021_01_07_425794	119	24	short	short	JJ
10_1101-2021_01_07_425794	119	25	genes	gene	NNS
10_1101-2021_01_07_425794	119	26	.	.	.
10_1101-2021_01_07_425794	120	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	120	2	further	further	RB
10_1101-2021_01_07_425794	120	3	performed	perform	VBD
10_1101-2021_01_07_425794	120	4	gene	gene	NN
10_1101-2021_01_07_425794	120	5	-	-	HYPH
10_1101-2021_01_07_425794	120	6	wise	wise	JJ
10_1101-2021_01_07_425794	120	7	comparison	comparison	NN
10_1101-2021_01_07_425794	120	8	of	of	IN
10_1101-2021_01_07_425794	120	9	effective	effective	JJ
10_1101-2021_01_07_425794	120	10	gene	gene	NN
10_1101-2021_01_07_425794	120	11	lengths	length	NNS
10_1101-2021_01_07_425794	120	12	using	use	VBG
10_1101-2021_01_07_425794	120	13	common	common	JJ
10_1101-2021_01_07_425794	120	14	genes	gene	NNS
10_1101-2021_01_07_425794	120	15	between	between	IN
10_1101-2021_01_07_425794	120	16	each	each	DT
10_1101-2021_01_07_425794	120	17	pair	pair	NN
10_1101-2021_01_07_425794	120	18	of	of	IN
10_1101-2021_01_07_425794	120	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	120	20	.	.	.
10_1101-2021_01_07_425794	121	1	Although	although	IN
10_1101-2021_01_07_425794	121	2	every	every	DT
10_1101-2021_01_07_425794	121	3	annotation	annotation	NN
10_1101-2021_01_07_425794	121	4	contains	contain	VBZ
10_1101-2021_01_07_425794	121	5	both	both	CC
10_1101-2021_01_07_425794	121	6	longer	long	JJR
10_1101-2021_01_07_425794	121	7	and	and	CC
10_1101-2021_01_07_425794	121	8	shorter	short	JJR
10_1101-2021_01_07_425794	121	9	genes	gene	NNS
10_1101-2021_01_07_425794	121	10	in	in	IN
10_1101-2021_01_07_425794	121	11	comparison	comparison	NN
10_1101-2021_01_07_425794	121	12	to	to	IN
10_1101-2021_01_07_425794	121	13	the	the	DT
10_1101-2021_01_07_425794	121	14	corresponding	correspond	VBG
10_1101-2021_01_07_425794	121	15	genes	gene	NNS
10_1101-2021_01_07_425794	121	16	from	from	IN
10_1101-2021_01_07_425794	121	17	other	other	JJ
10_1101-2021_01_07_425794	121	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	121	19	,	,	,
10_1101-2021_01_07_425794	121	20	the	the	DT
10_1101-2021_01_07_425794	121	21	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	121	22	genes	gene	NNS
10_1101-2021_01_07_425794	121	23	were	be	VBD
10_1101-2021_01_07_425794	121	24	found	find	VBN
10_1101-2021_01_07_425794	121	25	to	to	TO
10_1101-2021_01_07_425794	121	26	have	have	VB
10_1101-2021_01_07_425794	121	27	a	a	DT
10_1101-2021_01_07_425794	121	28	larger	large	JJR
10_1101-2021_01_07_425794	121	29	effective	effective	JJ
10_1101-2021_01_07_425794	121	30	length	length	NN
10_1101-2021_01_07_425794	121	31	than	than	IN
10_1101-2021_01_07_425794	121	32	genes	gene	NNS
10_1101-2021_01_07_425794	121	33	from	from	IN
10_1101-2021_01_07_425794	121	34	the	the	DT
10_1101-2021_01_07_425794	121	35	two	two	CD
10_1101-2021_01_07_425794	121	36	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	121	37	annotations	annotation	NNS
10_1101-2021_01_07_425794	121	38	overall	overall	JJ
10_1101-2021_01_07_425794	121	39	(	(	-LRB-
10_1101-2021_01_07_425794	121	40	Figure	figure	NN
10_1101-2021_01_07_425794	121	41	1C	1c	NN
10_1101-2021_01_07_425794	121	42	)	)	-RRB-
10_1101-2021_01_07_425794	121	43	.	.	.
10_1101-2021_01_07_425794	122	1	This	this	DT
10_1101-2021_01_07_425794	122	2	is	be	VBZ
10_1101-2021_01_07_425794	122	3	in	in	IN
10_1101-2021_01_07_425794	122	4	contrast	contrast	NN
10_1101-2021_01_07_425794	122	5	to	to	IN
10_1101-2021_01_07_425794	122	6	the	the	DT
10_1101-2021_01_07_425794	122	7	higher	high	JJR
10_1101-2021_01_07_425794	122	8	proportion	proportion	NN
10_1101-2021_01_07_425794	122	9	of	of	IN
10_1101-2021_01_07_425794	122	10	short	short	JJ
10_1101-2021_01_07_425794	122	11	genes	gene	NNS
10_1101-2021_01_07_425794	122	12	observed	observe	VBN
10_1101-2021_01_07_425794	122	13	in	in	IN
10_1101-2021_01_07_425794	122	14	the	the	DT
10_1101-2021_01_07_425794	122	15	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	122	16	annotation	annotation	NN
10_1101-2021_01_07_425794	122	17	(	(	-LRB-
10_1101-2021_01_07_425794	122	18	Figure	figure	NN
10_1101-2021_01_07_425794	122	19	1B	1b	NN
10_1101-2021_01_07_425794	122	20	)	)	-RRB-
10_1101-2021_01_07_425794	122	21	,	,	,
10_1101-2021_01_07_425794	122	22	which	which	WDT
10_1101-2021_01_07_425794	122	23	indicates	indicate	VBZ
10_1101-2021_01_07_425794	122	24	that	that	IN
10_1101-2021_01_07_425794	122	25	the	the	DT
10_1101-2021_01_07_425794	122	26	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	122	27	genes	gene	NNS
10_1101-2021_01_07_425794	122	28	that	that	WDT
10_1101-2021_01_07_425794	122	29	are	be	VBP
10_1101-2021_01_07_425794	122	30	also	also	RB
10_1101-2021_01_07_425794	122	31	present	present	JJ
10_1101-2021_01_07_425794	122	32	in	in	IN
10_1101-2021_01_07_425794	122	33	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	122	34	-	-	HYPH
10_1101-2021_01_07_425794	122	35	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	122	36	or	or	CC
10_1101-2021_01_07_425794	122	37	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	122	38	-	-	HYPH
10_1101-2021_01_07_425794	122	39	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	122	40	annotations	annotation	NNS
10_1101-2021_01_07_425794	122	41	tend	tend	VBP
10_1101-2021_01_07_425794	122	42	to	to	TO
10_1101-2021_01_07_425794	122	43	be	be	VB
10_1101-2021_01_07_425794	122	44	longer	long	JJR
10_1101-2021_01_07_425794	122	45	than	than	IN
10_1101-2021_01_07_425794	122	46	those	those	DT
10_1101-2021_01_07_425794	122	47	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	122	48	genes	gene	NNS
10_1101-2021_01_07_425794	122	49	that	that	WDT
10_1101-2021_01_07_425794	122	50	can	can	MD
10_1101-2021_01_07_425794	122	51	only	only	RB
10_1101-2021_01_07_425794	122	52	be	be	VB
10_1101-2021_01_07_425794	122	53	found	find	VBN
10_1101-2021_01_07_425794	122	54	in	in	IN
10_1101-2021_01_07_425794	122	55	the	the	DT
10_1101-2021_01_07_425794	122	56	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	122	57	annotation	annotation	NN
10_1101-2021_01_07_425794	122	58	.	.	.
10_1101-2021_01_07_425794	123	1	Although	although	IN
10_1101-2021_01_07_425794	123	2	at	at	RB
10_1101-2021_01_07_425794	123	3	least	least	JJS
10_1101-2021_01_07_425794	123	4	half	half	NN
10_1101-2021_01_07_425794	123	5	of	of	IN
10_1101-2021_01_07_425794	123	6	the	the	DT
10_1101-2021_01_07_425794	123	7	genes	gene	NNS
10_1101-2021_01_07_425794	123	8	were	be	VBD
10_1101-2021_01_07_425794	123	9	found	find	VBN
10_1101-2021_01_07_425794	123	10	to	to	TO
10_1101-2021_01_07_425794	123	11	have	have	VB
10_1101-2021_01_07_425794	123	12	a	a	DT
10_1101-2021_01_07_425794	123	13	less	less	JJR
10_1101-2021_01_07_425794	123	14	than	than	IN
10_1101-2021_01_07_425794	123	15	2-fold	2-fold	CD
10_1101-2021_01_07_425794	123	16	(	(	-LRB-
10_1101-2021_01_07_425794	123	17	1-fold	1-fold	CD
10_1101-2021_01_07_425794	123	18	at	at	IN
10_1101-2021_01_07_425794	123	19	log2	log2	NN
10_1101-2021_01_07_425794	123	20	scale	scale	NN
10_1101-2021_01_07_425794	123	21	)	)	-RRB-
10_1101-2021_01_07_425794	123	22	length	length	NN
10_1101-2021_01_07_425794	123	23	difference	difference	NN
10_1101-2021_01_07_425794	123	24	between	between	IN
10_1101-2021_01_07_425794	123	25	annotations	annotation	NNS
10_1101-2021_01_07_425794	123	26	(	(	-LRB-
10_1101-2021_01_07_425794	123	27	Figure	figure	NN
10_1101-2021_01_07_425794	123	28	1C	1c	NN
10_1101-2021_01_07_425794	123	29	)	)	-RRB-
10_1101-2021_01_07_425794	123	30	,	,	,
10_1101-2021_01_07_425794	123	31	the	the	DT
10_1101-2021_01_07_425794	123	32	length	length	NN
10_1101-2021_01_07_425794	123	33	differences	difference	NNS
10_1101-2021_01_07_425794	123	34	could	could	MD
10_1101-2021_01_07_425794	123	35	be	be	VB
10_1101-2021_01_07_425794	123	36	as	as	RB
10_1101-2021_01_07_425794	123	37	high	high	JJ
10_1101-2021_01_07_425794	123	38	as	as	IN
10_1101-2021_01_07_425794	123	39	more	more	JJR
10_1101-2021_01_07_425794	123	40	than	than	IN
10_1101-2021_01_07_425794	123	41	64-folds	64-folds	CD
10_1101-2021_01_07_425794	123	42	(	(	-LRB-
10_1101-2021_01_07_425794	123	43	6-folds	6-folds	CD
10_1101-2021_01_07_425794	123	44	at	at	IN
10_1101-2021_01_07_425794	123	45	log2	log2	NN
10_1101-2021_01_07_425794	123	46	scale	scale	NN
10_1101-2021_01_07_425794	123	47	)	)	-RRB-
10_1101-2021_01_07_425794	123	48	.	.	.
10_1101-2021_01_07_425794	124	1	The	the	DT
10_1101-2021_01_07_425794	124	2	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	124	3	-	-	HYPH
10_1101-2021_01_07_425794	124	4	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	124	5	genes	gene	NNS
10_1101-2021_01_07_425794	124	6	seem	seem	VBP
10_1101-2021_01_07_425794	124	7	to	to	IN
10_1101-2021_01_07_425794	124	8	8	8	CD
10_1101-2021_01_07_425794	124	9	.CC	.CC	NFP
10_1101-2021_01_07_425794	124	10	-	-	HYPH
10_1101-2021_01_07_425794	124	11	BY	by	IN
10_1101-2021_01_07_425794	124	12	-	-	HYPH
10_1101-2021_01_07_425794	124	13	NC	NC	NNP
10_1101-2021_01_07_425794	124	14	-	-	HYPH
10_1101-2021_01_07_425794	124	15	ND	ND	NNP
10_1101-2021_01_07_425794	124	16	4.0	4.0	CD
10_1101-2021_01_07_425794	124	17	International	international	JJ
10_1101-2021_01_07_425794	124	18	licensemade	licensemade	NN
10_1101-2021_01_07_425794	124	19	available	available	JJ
10_1101-2021_01_07_425794	124	20	under	under	IN
10_1101-2021_01_07_425794	124	21	a	a	DT
10_1101-2021_01_07_425794	124	22	(	(	-LRB-
10_1101-2021_01_07_425794	124	23	which	which	WDT
10_1101-2021_01_07_425794	124	24	was	be	VBD
10_1101-2021_01_07_425794	124	25	not	not	RB
10_1101-2021_01_07_425794	124	26	certified	certify	VBN
10_1101-2021_01_07_425794	124	27	by	by	IN
10_1101-2021_01_07_425794	124	28	peer	peer	NN
10_1101-2021_01_07_425794	124	29	review	review	NN
10_1101-2021_01_07_425794	124	30	)	)	-RRB-
10_1101-2021_01_07_425794	124	31	is	be	VBZ
10_1101-2021_01_07_425794	124	32	the	the	DT
10_1101-2021_01_07_425794	124	33	author	author	NN
10_1101-2021_01_07_425794	124	34	/	/	SYM
10_1101-2021_01_07_425794	124	35	funder	funder	NN
10_1101-2021_01_07_425794	124	36	,	,	,
10_1101-2021_01_07_425794	124	37	who	who	WP
10_1101-2021_01_07_425794	124	38	has	have	VBZ
10_1101-2021_01_07_425794	124	39	granted	grant	VBN
10_1101-2021_01_07_425794	124	40	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	124	41	a	a	DT
10_1101-2021_01_07_425794	124	42	license	license	NN
10_1101-2021_01_07_425794	124	43	to	to	TO
10_1101-2021_01_07_425794	124	44	display	display	VB
10_1101-2021_01_07_425794	124	45	the	the	DT
10_1101-2021_01_07_425794	124	46	preprint	preprint	NN
10_1101-2021_01_07_425794	124	47	in	in	IN
10_1101-2021_01_07_425794	124	48	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	124	49	.	.	.
10_1101-2021_01_07_425794	125	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	125	2	is	be	VBZ
10_1101-2021_01_07_425794	125	3	The	the	DT
10_1101-2021_01_07_425794	125	4	copyright	copyright	NN
10_1101-2021_01_07_425794	125	5	holder	holder	NN
10_1101-2021_01_07_425794	125	6	for	for	IN
10_1101-2021_01_07_425794	125	7	this	this	DT
10_1101-2021_01_07_425794	125	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	125	9	version	version	NN
10_1101-2021_01_07_425794	125	10	posted	post	VBD
10_1101-2021_01_07_425794	125	11	January	January	NNP
10_1101-2021_01_07_425794	125	12	8	8	CD
10_1101-2021_01_07_425794	125	13	,	,	,
10_1101-2021_01_07_425794	125	14	2021	2021	CD
10_1101-2021_01_07_425794	125	15	.	.	.
10_1101-2021_01_07_425794	125	16	;	;	:
10_1101-2021_01_07_425794	125	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	125	18	:	:	:
10_1101-2021_01_07_425794	125	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	125	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	125	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	125	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	125	23	be	be	VB
10_1101-2021_01_07_425794	125	24	slightly	slightly	RB
10_1101-2021_01_07_425794	125	25	longer	long	JJR
10_1101-2021_01_07_425794	125	26	than	than	IN
10_1101-2021_01_07_425794	125	27	the	the	DT
10_1101-2021_01_07_425794	125	28	corresponding	corresponding	JJ
10_1101-2021_01_07_425794	125	29	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	125	30	-	-	HYPH
10_1101-2021_01_07_425794	125	31	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	125	32	genes	gene	NNS
10_1101-2021_01_07_425794	125	33	overall	overall	RB
10_1101-2021_01_07_425794	125	34	.	.	.
10_1101-2021_01_07_425794	126	1	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	126	2	and	and	CC
10_1101-2021_01_07_425794	126	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	126	4	-	-	HYPH
10_1101-2021_01_07_425794	126	5	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	126	6	were	be	VBD
10_1101-2021_01_07_425794	126	7	found	find	VBN
10_1101-2021_01_07_425794	126	8	to	to	TO
10_1101-2021_01_07_425794	126	9	be	be	VB
10_1101-2021_01_07_425794	126	10	the	the	DT
10_1101-2021_01_07_425794	126	11	least	least	JJS
10_1101-2021_01_07_425794	126	12	concordant	concordant	NN
10_1101-2021_01_07_425794	126	13	annotations	annotation	NNS
10_1101-2021_01_07_425794	126	14	among	among	IN
10_1101-2021_01_07_425794	126	15	the	the	DT
10_1101-2021_01_07_425794	126	16	three	three	CD
10_1101-2021_01_07_425794	126	17	annotations	annotation	NNS
10_1101-2021_01_07_425794	126	18	being	be	VBG
10_1101-2021_01_07_425794	126	19	compared	compare	VBN
10_1101-2021_01_07_425794	126	20	.	.	.
10_1101-2021_01_07_425794	127	1	Lastly	lastly	RB
10_1101-2021_01_07_425794	127	2	,	,	,
10_1101-2021_01_07_425794	127	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	127	4	compared	compare	VBD
10_1101-2021_01_07_425794	127	5	the	the	DT
10_1101-2021_01_07_425794	127	6	size	size	NN
10_1101-2021_01_07_425794	127	7	of	of	IN
10_1101-2021_01_07_425794	127	8	the	the	DT
10_1101-2021_01_07_425794	127	9	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	127	10	represented	represent	VBN
10_1101-2021_01_07_425794	127	11	by	by	IN
10_1101-2021_01_07_425794	127	12	each	each	DT
10_1101-2021_01_07_425794	127	13	annotation	annotation	NN
10_1101-2021_01_07_425794	127	14	.	.	.
10_1101-2021_01_07_425794	128	1	The	the	DT
10_1101-2021_01_07_425794	128	2	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	128	3	size	size	NN
10_1101-2021_01_07_425794	128	4	of	of	IN
10_1101-2021_01_07_425794	128	5	an	an	DT
10_1101-2021_01_07_425794	128	6	annotation	annotation	NN
10_1101-2021_01_07_425794	128	7	is	be	VBZ
10_1101-2021_01_07_425794	128	8	computed	compute	VBN
10_1101-2021_01_07_425794	128	9	as	as	IN
10_1101-2021_01_07_425794	128	10	the	the	DT
10_1101-2021_01_07_425794	128	11	sum	sum	NN
10_1101-2021_01_07_425794	128	12	of	of	IN
10_1101-2021_01_07_425794	128	13	effective	effective	JJ
10_1101-2021_01_07_425794	128	14	gene	gene	NN
10_1101-2021_01_07_425794	128	15	lengths	length	NNS
10_1101-2021_01_07_425794	128	16	from	from	IN
10_1101-2021_01_07_425794	128	17	all	all	PDT
10_1101-2021_01_07_425794	128	18	the	the	DT
10_1101-2021_01_07_425794	128	19	genes	gene	NNS
10_1101-2021_01_07_425794	128	20	included	include	VBN
10_1101-2021_01_07_425794	128	21	in	in	IN
10_1101-2021_01_07_425794	128	22	that	that	DT
10_1101-2021_01_07_425794	128	23	annotation	annotation	NN
10_1101-2021_01_07_425794	128	24	,	,	,
10_1101-2021_01_07_425794	128	25	which	which	WDT
10_1101-2021_01_07_425794	128	26	also	also	RB
10_1101-2021_01_07_425794	128	27	represents	represent	VBZ
10_1101-2021_01_07_425794	128	28	the	the	DT
10_1101-2021_01_07_425794	128	29	total	total	JJ
10_1101-2021_01_07_425794	128	30	num-	num-	NNP
10_1101-2021_01_07_425794	128	31	ber	ber	NN
10_1101-2021_01_07_425794	128	32	of	of	IN
10_1101-2021_01_07_425794	128	33	exonic	exonic	JJ
10_1101-2021_01_07_425794	128	34	bases	basis	NNS
10_1101-2021_01_07_425794	128	35	that	that	WDT
10_1101-2021_01_07_425794	128	36	were	be	VBD
10_1101-2021_01_07_425794	128	37	annotated	annotate	VBN
10_1101-2021_01_07_425794	128	38	in	in	IN
10_1101-2021_01_07_425794	128	39	an	an	DT
10_1101-2021_01_07_425794	128	40	annotation	annotation	NN
10_1101-2021_01_07_425794	128	41	.	.	.
10_1101-2021_01_07_425794	129	1	Figure	figure	NN
10_1101-2021_01_07_425794	129	2	1D	1D	NNP
10_1101-2021_01_07_425794	129	3	shows	show	VBZ
10_1101-2021_01_07_425794	129	4	that	that	IN
10_1101-2021_01_07_425794	129	5	the	the	DT
10_1101-2021_01_07_425794	129	6	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	129	7	annotation	annotation	NN
10_1101-2021_01_07_425794	129	8	has	have	VBZ
10_1101-2021_01_07_425794	129	9	a	a	DT
10_1101-2021_01_07_425794	129	10	larger	large	JJR
10_1101-2021_01_07_425794	129	11	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	129	12	size	size	NN
10_1101-2021_01_07_425794	129	13	than	than	IN
10_1101-2021_01_07_425794	129	14	both	both	DT
10_1101-2021_01_07_425794	129	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	129	16	-	-	HYPH
10_1101-2021_01_07_425794	129	17	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	129	18	and	and	CC
10_1101-2021_01_07_425794	129	19	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	129	20	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	129	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	129	22	.	.	.
10_1101-2021_01_07_425794	130	1	This	this	DT
10_1101-2021_01_07_425794	130	2	is	be	VBZ
10_1101-2021_01_07_425794	130	3	not	not	RB
10_1101-2021_01_07_425794	130	4	surprising	surprising	JJ
10_1101-2021_01_07_425794	130	5	because	because	IN
10_1101-2021_01_07_425794	130	6	the	the	DT
10_1101-2021_01_07_425794	130	7	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	130	8	annotation	annotation	NN
10_1101-2021_01_07_425794	130	9	contains	contain	VBZ
10_1101-2021_01_07_425794	130	10	more	more	JJR
10_1101-2021_01_07_425794	130	11	genes	gene	NNS
10_1101-2021_01_07_425794	130	12	and	and	CC
10_1101-2021_01_07_425794	130	13	also	also	RB
10_1101-2021_01_07_425794	130	14	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	130	15	genes	gene	NNS
10_1101-2021_01_07_425794	130	16	common	common	JJ
10_1101-2021_01_07_425794	130	17	to	to	IN
10_1101-2021_01_07_425794	130	18	other	other	JJ
10_1101-2021_01_07_425794	130	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	130	20	are	be	VBP
10_1101-2021_01_07_425794	130	21	longer	long	JJR
10_1101-2021_01_07_425794	130	22	in	in	IN
10_1101-2021_01_07_425794	130	23	general	general	JJ
10_1101-2021_01_07_425794	130	24	.	.	.
10_1101-2021_01_07_425794	131	1	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	131	2	-	-	HYPH
10_1101-2021_01_07_425794	131	3	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	131	4	has	have	VBZ
10_1101-2021_01_07_425794	131	5	a	a	DT
10_1101-2021_01_07_425794	131	6	much	much	RB
10_1101-2021_01_07_425794	131	7	smaller	small	JJR
10_1101-2021_01_07_425794	131	8	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	131	9	size	size	NN
10_1101-2021_01_07_425794	131	10	than	than	IN
10_1101-2021_01_07_425794	131	11	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	131	12	-	-	HYPH
10_1101-2021_01_07_425794	131	13	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	131	14	,	,	,
10_1101-2021_01_07_425794	131	15	indicating	indicate	VBG
10_1101-2021_01_07_425794	131	16	a	a	DT
10_1101-2021_01_07_425794	131	17	significant	significant	JJ
10_1101-2021_01_07_425794	131	18	expansion	expansion	NN
10_1101-2021_01_07_425794	131	19	of	of	IN
10_1101-2021_01_07_425794	131	20	the	the	DT
10_1101-2021_01_07_425794	131	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	131	22	-	-	HYPH
10_1101-2021_01_07_425794	131	23	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	131	24	annotation	annotation	NN
10_1101-2021_01_07_425794	131	25	in	in	IN
10_1101-2021_01_07_425794	131	26	the	the	DT
10_1101-2021_01_07_425794	131	27	past	past	JJ
10_1101-2021_01_07_425794	131	28	five	five	CD
10_1101-2021_01_07_425794	131	29	years	year	NNS
10_1101-2021_01_07_425794	131	30	.	.	.
10_1101-2021_01_07_425794	132	1	However	however	RB
10_1101-2021_01_07_425794	132	2	,	,	,
10_1101-2021_01_07_425794	132	3	it	-PRON-	PRP
10_1101-2021_01_07_425794	132	4	is	be	VBZ
10_1101-2021_01_07_425794	132	5	important	important	JJ
10_1101-2021_01_07_425794	132	6	to	to	TO
10_1101-2021_01_07_425794	132	7	note	note	VB
10_1101-2021_01_07_425794	132	8	that	that	IN
10_1101-2021_01_07_425794	132	9	the	the	DT
10_1101-2021_01_07_425794	132	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	132	11	-	-	HYPH
10_1101-2021_01_07_425794	132	12	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	132	13	annotation	annotation	NN
10_1101-2021_01_07_425794	132	14	is	be	VBZ
10_1101-2021_01_07_425794	132	15	not	not	RB
10_1101-2021_01_07_425794	132	16	a	a	DT
10_1101-2021_01_07_425794	132	17	subset	subset	NN
10_1101-2021_01_07_425794	132	18	of	of	IN
10_1101-2021_01_07_425794	132	19	the	the	DT
10_1101-2021_01_07_425794	132	20	RefSeq-	refseq-	JJ
10_1101-2021_01_07_425794	132	21	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	132	22	annotation	annotation	NN
10_1101-2021_01_07_425794	132	23	,	,	,
10_1101-2021_01_07_425794	132	24	as	as	IN
10_1101-2021_01_07_425794	132	25	demonstrated	demonstrate	VBN
10_1101-2021_01_07_425794	132	26	by	by	IN
10_1101-2021_01_07_425794	132	27	the	the	DT
10_1101-2021_01_07_425794	132	28	existence	existence	NN
10_1101-2021_01_07_425794	132	29	of	of	IN
10_1101-2021_01_07_425794	132	30	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	132	31	-	-	HYPH
10_1101-2021_01_07_425794	132	32	RSubread	RSubread	NNP
10_1101-2021_01_07_425794	132	33	genes	gene	NNS
10_1101-2021_01_07_425794	132	34	that	that	WDT
10_1101-2021_01_07_425794	132	35	are	be	VBP
10_1101-2021_01_07_425794	132	36	absent	absent	JJ
10_1101-2021_01_07_425794	132	37	in	in	IN
10_1101-2021_01_07_425794	132	38	the	the	DT
10_1101-2021_01_07_425794	132	39	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	132	40	-	-	HYPH
10_1101-2021_01_07_425794	132	41	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	132	42	annotation	annotation	NN
10_1101-2021_01_07_425794	132	43	,	,	,
10_1101-2021_01_07_425794	132	44	the	the	DT
10_1101-2021_01_07_425794	132	45	difference	difference	NN
10_1101-2021_01_07_425794	132	46	in	in	IN
10_1101-2021_01_07_425794	132	47	gene	gene	NN
10_1101-2021_01_07_425794	132	48	length	length	NN
10_1101-2021_01_07_425794	132	49	distribution	distribution	NN
10_1101-2021_01_07_425794	132	50	and	and	CC
10_1101-2021_01_07_425794	132	51	the	the	DT
10_1101-2021_01_07_425794	132	52	length	length	NN
10_1101-2021_01_07_425794	132	53	differences	difference	NNS
10_1101-2021_01_07_425794	132	54	of	of	IN
10_1101-2021_01_07_425794	132	55	the	the	DT
10_1101-2021_01_07_425794	132	56	same	same	JJ
10_1101-2021_01_07_425794	132	57	genes	gene	NNS
10_1101-2021_01_07_425794	132	58	between	between	IN
10_1101-2021_01_07_425794	132	59	the	the	DT
10_1101-2021_01_07_425794	132	60	two	two	CD
10_1101-2021_01_07_425794	132	61	annotations	annotation	NNS
10_1101-2021_01_07_425794	132	62	(	(	-LRB-
10_1101-2021_01_07_425794	132	63	Figure	figure	NN
10_1101-2021_01_07_425794	132	64	1A	1a	CD
10_1101-2021_01_07_425794	132	65	-	-	HYPH
10_1101-2021_01_07_425794	132	66	C	c	NN
10_1101-2021_01_07_425794	132	67	)	)	-RRB-
10_1101-2021_01_07_425794	132	68	.	.	.
10_1101-2021_01_07_425794	133	1	This	this	DT
10_1101-2021_01_07_425794	133	2	indicates	indicate	VBZ
10_1101-2021_01_07_425794	133	3	that	that	IN
10_1101-2021_01_07_425794	133	4	not	not	RB
10_1101-2021_01_07_425794	133	5	only	only	RB
10_1101-2021_01_07_425794	133	6	were	be	VBD
10_1101-2021_01_07_425794	133	7	new	new	JJ
10_1101-2021_01_07_425794	133	8	genes	gene	NNS
10_1101-2021_01_07_425794	133	9	added	add	VBN
10_1101-2021_01_07_425794	133	10	to	to	IN
10_1101-2021_01_07_425794	133	11	the	the	DT
10_1101-2021_01_07_425794	133	12	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	133	13	annotation	annotation	NN
10_1101-2021_01_07_425794	133	14	during	during	IN
10_1101-2021_01_07_425794	133	15	the	the	DT
10_1101-2021_01_07_425794	133	16	expansion	expansion	NN
10_1101-2021_01_07_425794	133	17	,	,	,
10_1101-2021_01_07_425794	133	18	but	but	CC
10_1101-2021_01_07_425794	133	19	existing	exist	VBG
10_1101-2021_01_07_425794	133	20	genes	gene	NNS
10_1101-2021_01_07_425794	133	21	have	have	VBP
10_1101-2021_01_07_425794	133	22	been	be	VBN
10_1101-2021_01_07_425794	133	23	modified	modify	VBN
10_1101-2021_01_07_425794	133	24	.	.	.
10_1101-2021_01_07_425794	134	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	134	2	is	be	VBZ
10_1101-2021_01_07_425794	134	3	against	against	IN
10_1101-2021_01_07_425794	134	4	this	this	DT
10_1101-2021_01_07_425794	134	5	background	background	NN
10_1101-2021_01_07_425794	134	6	that	that	WDT
10_1101-2021_01_07_425794	134	7	we	-PRON-	PRP
10_1101-2021_01_07_425794	134	8	sought	seek	VBD
10_1101-2021_01_07_425794	134	9	to	to	TO
10_1101-2021_01_07_425794	134	10	understand	understand	VB
10_1101-2021_01_07_425794	134	11	how	how	WRB
10_1101-2021_01_07_425794	134	12	these	these	DT
10_1101-2021_01_07_425794	134	13	differences	difference	NNS
10_1101-2021_01_07_425794	134	14	in	in	IN
10_1101-2021_01_07_425794	134	15	the	the	DT
10_1101-2021_01_07_425794	134	16	annotations	annotation	NNS
10_1101-2021_01_07_425794	134	17	impact	impact	NN
10_1101-2021_01_07_425794	134	18	on	on	IN
10_1101-2021_01_07_425794	134	19	the	the	DT
10_1101-2021_01_07_425794	134	20	overall	overall	JJ
10_1101-2021_01_07_425794	134	21	gene	gene	NN
10_1101-2021_01_07_425794	134	22	-	-	HYPH
10_1101-2021_01_07_425794	134	23	level	level	NN
10_1101-2021_01_07_425794	134	24	quantification	quantification	NN
10_1101-2021_01_07_425794	134	25	results	result	NNS
10_1101-2021_01_07_425794	134	26	.	.	.
10_1101-2021_01_07_425794	135	1	3.2	3.2	CD
10_1101-2021_01_07_425794	135	2	Fragments	Fragments	NNPS
10_1101-2021_01_07_425794	135	3	counted	count	VBD
10_1101-2021_01_07_425794	135	4	to	to	IN
10_1101-2021_01_07_425794	135	5	annotated	annotate	VBN
10_1101-2021_01_07_425794	135	6	genes	gene	NNS
10_1101-2021_01_07_425794	135	7	We	-PRON-	PRP
10_1101-2021_01_07_425794	135	8	used	use	VBD
10_1101-2021_01_07_425794	135	9	a	a	DT
10_1101-2021_01_07_425794	135	10	benchmark	benchmark	JJ
10_1101-2021_01_07_425794	135	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	135	12	-	-	HYPH
10_1101-2021_01_07_425794	135	13	seq	seq	NN
10_1101-2021_01_07_425794	135	14	dataset	dataset	NN
10_1101-2021_01_07_425794	135	15	generated	generate	VBN
10_1101-2021_01_07_425794	135	16	by	by	IN
10_1101-2021_01_07_425794	135	17	the	the	DT
10_1101-2021_01_07_425794	135	18	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	135	19	project	project	NN
10_1101-2021_01_07_425794	135	20	[	[	-LRB-
10_1101-2021_01_07_425794	135	21	1	1	CD
10_1101-2021_01_07_425794	135	22	]	]	-RRB-
10_1101-2021_01_07_425794	135	23	to	to	TO
10_1101-2021_01_07_425794	135	24	evaluate	evaluate	VB
10_1101-2021_01_07_425794	135	25	the	the	DT
10_1101-2021_01_07_425794	135	26	impact	impact	NN
10_1101-2021_01_07_425794	135	27	of	of	IN
10_1101-2021_01_07_425794	135	28	gene	gene	NN
10_1101-2021_01_07_425794	135	29	annotation	annotation	NN
10_1101-2021_01_07_425794	135	30	on	on	IN
10_1101-2021_01_07_425794	135	31	the	the	DT
10_1101-2021_01_07_425794	135	32	accuracy	accuracy	NN
10_1101-2021_01_07_425794	135	33	of	of	IN
10_1101-2021_01_07_425794	135	34	RNA	RNA	NNP
10_1101-2021_01_07_425794	135	35	-	-	HYPH
10_1101-2021_01_07_425794	135	36	seq	seq	NN
10_1101-2021_01_07_425794	135	37	expression	expression	NN
10_1101-2021_01_07_425794	135	38	quantification	quantification	NN
10_1101-2021_01_07_425794	135	39	.	.	.
10_1101-2021_01_07_425794	136	1	This	this	DT
10_1101-2021_01_07_425794	136	2	dataset	dataset	NN
10_1101-2021_01_07_425794	136	3	contains	contain	VBZ
10_1101-2021_01_07_425794	136	4	paired	pair	VBN
10_1101-2021_01_07_425794	136	5	-	-	HYPH
10_1101-2021_01_07_425794	136	6	end	end	NN
10_1101-2021_01_07_425794	136	7	100bp	100bp	NNP
10_1101-2021_01_07_425794	136	8	read	read	VB
10_1101-2021_01_07_425794	136	9	data	datum	NNS
10_1101-2021_01_07_425794	136	10	generated	generate	VBN
10_1101-2021_01_07_425794	136	11	for	for	IN
10_1101-2021_01_07_425794	136	12	four	four	CD
10_1101-2021_01_07_425794	136	13	samples	sample	NNS
10_1101-2021_01_07_425794	136	14	including	include	VBG
10_1101-2021_01_07_425794	136	15	a	a	DT
10_1101-2021_01_07_425794	136	16	Universal	Universal	NNP
10_1101-2021_01_07_425794	136	17	Human	Human	NNP
10_1101-2021_01_07_425794	136	18	Reference	Reference	NNP
10_1101-2021_01_07_425794	136	19	RNA	RNA	NNP
10_1101-2021_01_07_425794	136	20	sample	sample	NN
10_1101-2021_01_07_425794	136	21	(	(	-LRB-
10_1101-2021_01_07_425794	136	22	sample	sample	NNP
10_1101-2021_01_07_425794	136	23	A	A	NNP
10_1101-2021_01_07_425794	136	24	)	)	-RRB-
10_1101-2021_01_07_425794	136	25	,	,	,
10_1101-2021_01_07_425794	136	26	a	a	DT
10_1101-2021_01_07_425794	136	27	Human	Human	NNP
10_1101-2021_01_07_425794	136	28	Brain	Brain	NNP
10_1101-2021_01_07_425794	136	29	Reference	Reference	NNP
10_1101-2021_01_07_425794	136	30	RNA	RNA	NNP
10_1101-2021_01_07_425794	136	31	sample	sample	NN
10_1101-2021_01_07_425794	136	32	(	(	-LRB-
10_1101-2021_01_07_425794	136	33	sample	sample	NNP
10_1101-2021_01_07_425794	136	34	B	B	NNP
10_1101-2021_01_07_425794	136	35	)	)	-RRB-
10_1101-2021_01_07_425794	136	36	,	,	,
10_1101-2021_01_07_425794	136	37	a	a	DT
10_1101-2021_01_07_425794	136	38	mixture	mixture	NN
10_1101-2021_01_07_425794	136	39	sample	sample	NN
10_1101-2021_01_07_425794	136	40	with	with	IN
10_1101-2021_01_07_425794	136	41	75%A	75%a	CD
10_1101-2021_01_07_425794	136	42	and	and	CC
10_1101-2021_01_07_425794	136	43	25%B	25%b	CD
10_1101-2021_01_07_425794	136	44	(	(	-LRB-
10_1101-2021_01_07_425794	136	45	sample	sample	NN
10_1101-2021_01_07_425794	136	46	C	C	NNP
10_1101-2021_01_07_425794	136	47	)	)	-RRB-
10_1101-2021_01_07_425794	136	48	and	and	CC
10_1101-2021_01_07_425794	136	49	a	a	DT
10_1101-2021_01_07_425794	136	50	mixture	mixture	NN
10_1101-2021_01_07_425794	136	51	sample	sample	NN
10_1101-2021_01_07_425794	136	52	with	with	IN
10_1101-2021_01_07_425794	136	53	25%A	25%a	CD
10_1101-2021_01_07_425794	136	54	and	and	CC
10_1101-2021_01_07_425794	136	55	75%B	75%b	CD
10_1101-2021_01_07_425794	136	56	(	(	-LRB-
10_1101-2021_01_07_425794	136	57	sample	sample	NN
10_1101-2021_01_07_425794	136	58	D	D	NNP
10_1101-2021_01_07_425794	136	59	)	)	-RRB-
10_1101-2021_01_07_425794	136	60	.	.	.
10_1101-2021_01_07_425794	137	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	137	2	mapped	map	VBD
10_1101-2021_01_07_425794	137	3	the	the	DT
10_1101-2021_01_07_425794	137	4	RNA	RNA	NNP
10_1101-2021_01_07_425794	137	5	-	-	HYPH
10_1101-2021_01_07_425794	137	6	seq	seq	NN
10_1101-2021_01_07_425794	137	7	reads	read	VBZ
10_1101-2021_01_07_425794	137	8	to	to	IN
10_1101-2021_01_07_425794	137	9	the	the	DT
10_1101-2021_01_07_425794	137	10	human	human	JJ
10_1101-2021_01_07_425794	137	11	genome	genome	NNP
10_1101-2021_01_07_425794	137	12	GRCh38	GRCh38	NNP
10_1101-2021_01_07_425794	137	13	/	/	SYM
10_1101-2021_01_07_425794	137	14	hg38	hg38	NNP
10_1101-2021_01_07_425794	137	15	using	use	VBG
10_1101-2021_01_07_425794	137	16	the	the	DT
10_1101-2021_01_07_425794	137	17	Sub-	Sub-	NNP
10_1101-2021_01_07_425794	137	18	read	read	VBN
10_1101-2021_01_07_425794	137	19	aligner	aligner	NN
10_1101-2021_01_07_425794	137	20	[	[	-LRB-
10_1101-2021_01_07_425794	137	21	20	20	CD
10_1101-2021_01_07_425794	137	22	,	,	,
10_1101-2021_01_07_425794	137	23	5	5	CD
10_1101-2021_01_07_425794	137	24	]	]	-RRB-
10_1101-2021_01_07_425794	137	25	,	,	,
10_1101-2021_01_07_425794	137	26	and	and	CC
10_1101-2021_01_07_425794	137	27	then	then	RB
10_1101-2021_01_07_425794	137	28	counted	count	VBD
10_1101-2021_01_07_425794	137	29	the	the	DT
10_1101-2021_01_07_425794	137	30	number	number	NN
10_1101-2021_01_07_425794	137	31	of	of	IN
10_1101-2021_01_07_425794	137	32	mapped	map	VBN
10_1101-2021_01_07_425794	137	33	fragments	fragment	NNS
10_1101-2021_01_07_425794	137	34	(	(	-LRB-
10_1101-2021_01_07_425794	137	35	read	read	VB
10_1101-2021_01_07_425794	137	36	pairs	pair	NNS
10_1101-2021_01_07_425794	137	37	)	)	-RRB-
10_1101-2021_01_07_425794	137	38	to	to	IN
10_1101-2021_01_07_425794	137	39	each	each	DT
10_1101-2021_01_07_425794	137	40	gene	gene	NN
10_1101-2021_01_07_425794	137	41	in	in	IN
10_1101-2021_01_07_425794	137	42	each	each	DT
10_1101-2021_01_07_425794	137	43	annotation	annotation	NN
10_1101-2021_01_07_425794	137	44	using	use	VBG
10_1101-2021_01_07_425794	137	45	the	the	DT
10_1101-2021_01_07_425794	137	46	featureCounts	featurecount	NNS
10_1101-2021_01_07_425794	137	47	program	program	NN
10_1101-2021_01_07_425794	137	48	[	[	-LRB-
10_1101-2021_01_07_425794	137	49	4	4	CD
10_1101-2021_01_07_425794	137	50	,	,	,
10_1101-2021_01_07_425794	137	51	5	5	CD
10_1101-2021_01_07_425794	137	52	]	]	-RRB-
10_1101-2021_01_07_425794	137	53	.	.	.
10_1101-2021_01_07_425794	138	1	FeatureCounts	FeatureCounts	NNP
10_1101-2021_01_07_425794	138	2	assigns	assign	VBZ
10_1101-2021_01_07_425794	138	3	a	a	DT
10_1101-2021_01_07_425794	138	4	mapped	map	VBN
10_1101-2021_01_07_425794	138	5	fragment	fragment	NN
10_1101-2021_01_07_425794	138	6	to	to	IN
10_1101-2021_01_07_425794	138	7	a	a	DT
10_1101-2021_01_07_425794	138	8	gene	gene	NN
10_1101-2021_01_07_425794	138	9	if	if	IN
10_1101-2021_01_07_425794	138	10	the	the	DT
10_1101-2021_01_07_425794	138	11	fragment	fragment	NN
10_1101-2021_01_07_425794	138	12	overlaps	overlap	VBZ
10_1101-2021_01_07_425794	138	13	any	any	DT
10_1101-2021_01_07_425794	138	14	of	of	IN
10_1101-2021_01_07_425794	138	15	the	the	DT
10_1101-2021_01_07_425794	138	16	exons	exon	NNS
10_1101-2021_01_07_425794	138	17	in	in	IN
10_1101-2021_01_07_425794	138	18	the	the	DT
10_1101-2021_01_07_425794	138	19	gene	gene	NN
10_1101-2021_01_07_425794	138	20	.	.	.
10_1101-2021_01_07_425794	139	1	Figure	figure	NN
10_1101-2021_01_07_425794	139	2	2	2	CD
10_1101-2021_01_07_425794	139	3	shows	show	VBZ
10_1101-2021_01_07_425794	139	4	that	that	IN
10_1101-2021_01_07_425794	139	5	across	across	IN
10_1101-2021_01_07_425794	139	6	all	all	PDT
10_1101-2021_01_07_425794	139	7	the	the	DT
10_1101-2021_01_07_425794	139	8	16	16	CD
10_1101-2021_01_07_425794	139	9	libraries	library	NNS
10_1101-2021_01_07_425794	139	10	,	,	,
10_1101-2021_01_07_425794	139	11	the	the	DT
10_1101-2021_01_07_425794	139	12	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	139	13	-	-	HYPH
10_1101-2021_01_07_425794	139	14	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	139	15	annotation	annotation	NN
10_1101-2021_01_07_425794	139	16	constantly	constantly	RB
10_1101-2021_01_07_425794	139	17	has	have	VBZ
10_1101-2021_01_07_425794	139	18	substantially	substantially	RB
10_1101-2021_01_07_425794	139	19	more	more	JJR
10_1101-2021_01_07_425794	139	20	fragments	fragment	NNS
10_1101-2021_01_07_425794	139	21	assigned	assign	VBN
10_1101-2021_01_07_425794	139	22	to	to	IN
10_1101-2021_01_07_425794	139	23	it	-PRON-	PRP
10_1101-2021_01_07_425794	139	24	than	than	IN
10_1101-2021_01_07_425794	139	25	the	the	DT
10_1101-2021_01_07_425794	139	26	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	139	27	and	and	CC
10_1101-2021_01_07_425794	139	28	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	139	29	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	139	30	annotations	annotation	NNS
10_1101-2021_01_07_425794	139	31	.	.	.
10_1101-2021_01_07_425794	140	1	This	this	DT
10_1101-2021_01_07_425794	140	2	is	be	VBZ
10_1101-2021_01_07_425794	140	3	surprising	surprising	JJ
10_1101-2021_01_07_425794	140	4	because	because	IN
10_1101-2021_01_07_425794	140	5	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	140	6	-	-	HYPH
10_1101-2021_01_07_425794	140	7	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	140	8	contains	contain	VBZ
10_1101-2021_01_07_425794	140	9	much	much	RB
10_1101-2021_01_07_425794	140	10	less	less	RBR
10_1101-2021_01_07_425794	140	11	an-	an-	CC
10_1101-2021_01_07_425794	140	12	notated	notate	VBN
10_1101-2021_01_07_425794	140	13	genes	gene	NNS
10_1101-2021_01_07_425794	140	14	and	and	CC
10_1101-2021_01_07_425794	140	15	also	also	RB
10_1101-2021_01_07_425794	140	16	has	have	VBZ
10_1101-2021_01_07_425794	140	17	a	a	DT
10_1101-2021_01_07_425794	140	18	significantly	significantly	RB
10_1101-2021_01_07_425794	140	19	smaller	small	JJR
10_1101-2021_01_07_425794	140	20	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	140	21	,	,	,
10_1101-2021_01_07_425794	140	22	compared	compare	VBN
10_1101-2021_01_07_425794	140	23	to	to	IN
10_1101-2021_01_07_425794	140	24	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	140	25	9	9	CD
10_1101-2021_01_07_425794	140	26	.CC	.cc	SYM
10_1101-2021_01_07_425794	140	27	-	-	HYPH
10_1101-2021_01_07_425794	140	28	BY	by	IN
10_1101-2021_01_07_425794	140	29	-	-	HYPH
10_1101-2021_01_07_425794	140	30	NC	NC	NNP
10_1101-2021_01_07_425794	140	31	-	-	HYPH
10_1101-2021_01_07_425794	140	32	ND	ND	NNP
10_1101-2021_01_07_425794	140	33	4.0	4.0	CD
10_1101-2021_01_07_425794	140	34	International	international	JJ
10_1101-2021_01_07_425794	140	35	licensemade	licensemade	NN
10_1101-2021_01_07_425794	140	36	available	available	JJ
10_1101-2021_01_07_425794	140	37	under	under	IN
10_1101-2021_01_07_425794	140	38	a	a	DT
10_1101-2021_01_07_425794	140	39	(	(	-LRB-
10_1101-2021_01_07_425794	140	40	which	which	WDT
10_1101-2021_01_07_425794	140	41	was	be	VBD
10_1101-2021_01_07_425794	140	42	not	not	RB
10_1101-2021_01_07_425794	140	43	certified	certify	VBN
10_1101-2021_01_07_425794	140	44	by	by	IN
10_1101-2021_01_07_425794	140	45	peer	peer	NN
10_1101-2021_01_07_425794	140	46	review	review	NN
10_1101-2021_01_07_425794	140	47	)	)	-RRB-
10_1101-2021_01_07_425794	140	48	is	be	VBZ
10_1101-2021_01_07_425794	140	49	the	the	DT
10_1101-2021_01_07_425794	140	50	author	author	NN
10_1101-2021_01_07_425794	140	51	/	/	SYM
10_1101-2021_01_07_425794	140	52	funder	funder	NN
10_1101-2021_01_07_425794	140	53	,	,	,
10_1101-2021_01_07_425794	140	54	who	who	WP
10_1101-2021_01_07_425794	140	55	has	have	VBZ
10_1101-2021_01_07_425794	140	56	granted	grant	VBN
10_1101-2021_01_07_425794	140	57	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	140	58	a	a	DT
10_1101-2021_01_07_425794	140	59	license	license	NN
10_1101-2021_01_07_425794	140	60	to	to	TO
10_1101-2021_01_07_425794	140	61	display	display	VB
10_1101-2021_01_07_425794	140	62	the	the	DT
10_1101-2021_01_07_425794	140	63	preprint	preprint	NN
10_1101-2021_01_07_425794	140	64	in	in	IN
10_1101-2021_01_07_425794	140	65	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	140	66	.	.	.
10_1101-2021_01_07_425794	141	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	141	2	is	be	VBZ
10_1101-2021_01_07_425794	141	3	The	the	DT
10_1101-2021_01_07_425794	141	4	copyright	copyright	NN
10_1101-2021_01_07_425794	141	5	holder	holder	NN
10_1101-2021_01_07_425794	141	6	for	for	IN
10_1101-2021_01_07_425794	141	7	this	this	DT
10_1101-2021_01_07_425794	141	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	141	9	version	version	NN
10_1101-2021_01_07_425794	141	10	posted	post	VBD
10_1101-2021_01_07_425794	141	11	January	January	NNP
10_1101-2021_01_07_425794	141	12	8	8	CD
10_1101-2021_01_07_425794	141	13	,	,	,
10_1101-2021_01_07_425794	141	14	2021	2021	CD
10_1101-2021_01_07_425794	141	15	.	.	.
10_1101-2021_01_07_425794	141	16	;	;	:
10_1101-2021_01_07_425794	141	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	141	18	:	:	:
10_1101-2021_01_07_425794	141	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	141	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	141	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	141	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	141	23	P	p	NN
10_1101-2021_01_07_425794	141	24	er	er	UH
10_1101-2021_01_07_425794	141	25	ce	ce	UH
10_1101-2021_01_07_425794	141	26	nt	nt	RB
10_1101-2021_01_07_425794	141	27	ag	ag	NNP
10_1101-2021_01_07_425794	141	28	e	e	NNP
10_1101-2021_01_07_425794	141	29	of	of	IN
10_1101-2021_01_07_425794	141	30	co	co	NNP
10_1101-2021_01_07_425794	141	31	un	un	NNP
10_1101-2021_01_07_425794	141	32	te	te	NNP
10_1101-2021_01_07_425794	141	33	d	d	NNP
10_1101-2021_01_07_425794	141	34	fr	fr	NNP
10_1101-2021_01_07_425794	141	35	ag	ag	NNP
10_1101-2021_01_07_425794	141	36	m	m	NNP
10_1101-2021_01_07_425794	141	37	en	en	NNP
10_1101-2021_01_07_425794	141	38	ts	ts	NNP
10_1101-2021_01_07_425794	141	39	Key	Key	NNP
10_1101-2021_01_07_425794	141	40	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	141	41	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	141	42	-	-	HYPH
10_1101-2021_01_07_425794	141	43	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	141	44	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	141	45	-	-	HYPH
10_1101-2021_01_07_425794	141	46	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	141	47	0	0	CD
10_1101-2021_01_07_425794	141	48	20	20	CD
10_1101-2021_01_07_425794	141	49	40	40	CD
10_1101-2021_01_07_425794	141	50	60	60	CD
10_1101-2021_01_07_425794	141	51	80	80	CD
10_1101-2021_01_07_425794	141	52	A	a	NN
10_1101-2021_01_07_425794	141	53	−1	−1	NNP
10_1101-2021_01_07_425794	141	54	A	A	NNP
10_1101-2021_01_07_425794	141	55	−2	−2	NNP
10_1101-2021_01_07_425794	141	56	A	a	NN
10_1101-2021_01_07_425794	141	57	−3	−3	NNP
10_1101-2021_01_07_425794	141	58	A	a	NN
10_1101-2021_01_07_425794	141	59	−4	−4	NNP
10_1101-2021_01_07_425794	141	60	B	B	NNP
10_1101-2021_01_07_425794	141	61	−4	−4	NNP
10_1101-2021_01_07_425794	141	62	B	B	NNP
10_1101-2021_01_07_425794	141	63	−1	−1	NNP
10_1101-2021_01_07_425794	141	64	B	B	NNP
10_1101-2021_01_07_425794	141	65	−2	−2	NNP
10_1101-2021_01_07_425794	141	66	B	B	NNP
10_1101-2021_01_07_425794	141	67	−3	−3	NNP
10_1101-2021_01_07_425794	141	68	C	C	NNP
10_1101-2021_01_07_425794	141	69	−1	−1	NNP
10_1101-2021_01_07_425794	141	70	C	C	NNP
10_1101-2021_01_07_425794	141	71	−2	−2	NNP
10_1101-2021_01_07_425794	141	72	C	C	NNP
10_1101-2021_01_07_425794	141	73	−3	−3	NNP
10_1101-2021_01_07_425794	141	74	C	C	NNP
10_1101-2021_01_07_425794	141	75	−4	−4	NNP
10_1101-2021_01_07_425794	141	76	D	D	NNP
10_1101-2021_01_07_425794	141	77	−1	−1	NNP
10_1101-2021_01_07_425794	141	78	D	D	NNP
10_1101-2021_01_07_425794	141	79	−2	−2	NNP
10_1101-2021_01_07_425794	141	80	D	D	NNP
10_1101-2021_01_07_425794	141	81	−3	−3	NNP
10_1101-2021_01_07_425794	141	82	D	D	NNP
10_1101-2021_01_07_425794	141	83	−4	−4	NNP
10_1101-2021_01_07_425794	141	84	Figure	figure	NN
10_1101-2021_01_07_425794	141	85	2	2	CD
10_1101-2021_01_07_425794	141	86	:	:	:
10_1101-2021_01_07_425794	141	87	Barplots	barplot	NNS
10_1101-2021_01_07_425794	141	88	showing	show	VBG
10_1101-2021_01_07_425794	141	89	the	the	DT
10_1101-2021_01_07_425794	141	90	percentage	percentage	NN
10_1101-2021_01_07_425794	141	91	of	of	IN
10_1101-2021_01_07_425794	141	92	fragments	fragment	NNS
10_1101-2021_01_07_425794	141	93	successfully	successfully	RB
10_1101-2021_01_07_425794	141	94	assigned	assign	VBN
10_1101-2021_01_07_425794	141	95	to	to	IN
10_1101-2021_01_07_425794	141	96	genes	gene	NNS
10_1101-2021_01_07_425794	141	97	in	in	IN
10_1101-2021_01_07_425794	141	98	each	each	DT
10_1101-2021_01_07_425794	141	99	annota-	annota-	JJ
10_1101-2021_01_07_425794	141	100	tion	tion	NN
10_1101-2021_01_07_425794	141	101	,	,	,
10_1101-2021_01_07_425794	141	102	out	out	IN
10_1101-2021_01_07_425794	141	103	of	of	IN
10_1101-2021_01_07_425794	141	104	all	all	PDT
10_1101-2021_01_07_425794	141	105	the	the	DT
10_1101-2021_01_07_425794	141	106	fragments	fragment	NNS
10_1101-2021_01_07_425794	141	107	included	include	VBN
10_1101-2021_01_07_425794	141	108	in	in	IN
10_1101-2021_01_07_425794	141	109	each	each	DT
10_1101-2021_01_07_425794	141	110	library	library	NN
10_1101-2021_01_07_425794	141	111	.	.	.
10_1101-2021_01_07_425794	142	1	The	the	DT
10_1101-2021_01_07_425794	142	2	horizontal	horizontal	JJ
10_1101-2021_01_07_425794	142	3	axis	axi	NNS
10_1101-2021_01_07_425794	142	4	represents	represent	VBZ
10_1101-2021_01_07_425794	142	5	the	the	DT
10_1101-2021_01_07_425794	142	6	sixteen	sixteen	CD
10_1101-2021_01_07_425794	142	7	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	142	8	RNA	RNA	NNP
10_1101-2021_01_07_425794	142	9	-	-	HYPH
10_1101-2021_01_07_425794	142	10	seq	seq	NN
10_1101-2021_01_07_425794	142	11	libraries	library	NNS
10_1101-2021_01_07_425794	142	12	generated	generate	VBN
10_1101-2021_01_07_425794	142	13	from	from	IN
10_1101-2021_01_07_425794	142	14	the	the	DT
10_1101-2021_01_07_425794	142	15	four	four	CD
10_1101-2021_01_07_425794	142	16	samples	sample	NNS
10_1101-2021_01_07_425794	142	17	‘	'	``
10_1101-2021_01_07_425794	142	18	A	a	NN
10_1101-2021_01_07_425794	142	19	’	'	''
10_1101-2021_01_07_425794	142	20	,	,	,
10_1101-2021_01_07_425794	142	21	‘	'	``
10_1101-2021_01_07_425794	142	22	B	b	NN
10_1101-2021_01_07_425794	142	23	’	'	''
10_1101-2021_01_07_425794	142	24	,	,	,
10_1101-2021_01_07_425794	142	25	‘	'	``
10_1101-2021_01_07_425794	142	26	C	C	NNP
10_1101-2021_01_07_425794	142	27	’	'	''
10_1101-2021_01_07_425794	142	28	and	and	CC
10_1101-2021_01_07_425794	142	29	‘	'	``
10_1101-2021_01_07_425794	142	30	D	d	NN
10_1101-2021_01_07_425794	142	31	’	'	''
10_1101-2021_01_07_425794	142	32	.	.	.
10_1101-2021_01_07_425794	143	1	Each	each	DT
10_1101-2021_01_07_425794	143	2	sample	sample	NN
10_1101-2021_01_07_425794	143	3	has	have	VBZ
10_1101-2021_01_07_425794	143	4	four	four	CD
10_1101-2021_01_07_425794	143	5	replicates	replicate	NNS
10_1101-2021_01_07_425794	143	6	that	that	WDT
10_1101-2021_01_07_425794	143	7	are	be	VBP
10_1101-2021_01_07_425794	143	8	numbered	number	VBN
10_1101-2021_01_07_425794	143	9	from	from	IN
10_1101-2021_01_07_425794	143	10	1	1	CD
10_1101-2021_01_07_425794	143	11	to	to	IN
10_1101-2021_01_07_425794	143	12	4	4	CD
10_1101-2021_01_07_425794	143	13	.	.	.
10_1101-2021_01_07_425794	143	14	and	and	CC
10_1101-2021_01_07_425794	143	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	143	16	-	-	HYPH
10_1101-2021_01_07_425794	143	17	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	143	18	(	(	-LRB-
10_1101-2021_01_07_425794	143	19	Figure	Figure	NNP
10_1101-2021_01_07_425794	143	20	1A	1a	NN
10_1101-2021_01_07_425794	143	21	,	,	,
10_1101-2021_01_07_425794	143	22	D	d	NN
10_1101-2021_01_07_425794	143	23	)	)	-RRB-
10_1101-2021_01_07_425794	143	24	.	.	.
10_1101-2021_01_07_425794	144	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	144	2	then	then	RB
10_1101-2021_01_07_425794	144	3	performed	perform	VBD
10_1101-2021_01_07_425794	144	4	a	a	DT
10_1101-2021_01_07_425794	144	5	detailed	detailed	JJ
10_1101-2021_01_07_425794	144	6	investigation	investigation	NN
10_1101-2021_01_07_425794	144	7	into	into	IN
10_1101-2021_01_07_425794	144	8	the	the	DT
10_1101-2021_01_07_425794	144	9	mapping	mapping	NN
10_1101-2021_01_07_425794	144	10	and	and	CC
10_1101-2021_01_07_425794	144	11	counting	counting	NN
10_1101-2021_01_07_425794	144	12	results	result	NNS
10_1101-2021_01_07_425794	144	13	to	to	TO
10_1101-2021_01_07_425794	144	14	find	find	VB
10_1101-2021_01_07_425794	144	15	out	out	RP
10_1101-2021_01_07_425794	144	16	what	what	WP
10_1101-2021_01_07_425794	144	17	enabled	enable	VBD
10_1101-2021_01_07_425794	144	18	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	144	19	-	-	HYPH
10_1101-2021_01_07_425794	144	20	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	144	21	to	to	TO
10_1101-2021_01_07_425794	144	22	achieve	achieve	VB
10_1101-2021_01_07_425794	144	23	a	a	DT
10_1101-2021_01_07_425794	144	24	higher	high	JJR
10_1101-2021_01_07_425794	144	25	percentage	percentage	NN
10_1101-2021_01_07_425794	144	26	of	of	IN
10_1101-2021_01_07_425794	144	27	successfully	successfully	RB
10_1101-2021_01_07_425794	144	28	assigned	assign	VBN
10_1101-2021_01_07_425794	144	29	fragments	fragment	NNS
10_1101-2021_01_07_425794	144	30	.	.	.
10_1101-2021_01_07_425794	145	1	Although	although	IN
10_1101-2021_01_07_425794	145	2	gene	gene	NN
10_1101-2021_01_07_425794	145	3	annotations	annotation	NNS
10_1101-2021_01_07_425794	145	4	were	be	VBD
10_1101-2021_01_07_425794	145	5	utilized	utilize	VBN
10_1101-2021_01_07_425794	145	6	in	in	IN
10_1101-2021_01_07_425794	145	7	mapping	mapping	NN
10_1101-2021_01_07_425794	145	8	reads	read	VBZ
10_1101-2021_01_07_425794	145	9	to	to	IN
10_1101-2021_01_07_425794	145	10	the	the	DT
10_1101-2021_01_07_425794	145	11	human	human	JJ
10_1101-2021_01_07_425794	145	12	reference	reference	NN
10_1101-2021_01_07_425794	145	13	genome	genome	NN
10_1101-2021_01_07_425794	145	14	,	,	,
10_1101-2021_01_07_425794	145	15	the	the	DT
10_1101-2021_01_07_425794	145	16	use	use	NN
10_1101-2021_01_07_425794	145	17	of	of	IN
10_1101-2021_01_07_425794	145	18	different	different	JJ
10_1101-2021_01_07_425794	145	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	145	20	was	be	VBD
10_1101-2021_01_07_425794	145	21	not	not	RB
10_1101-2021_01_07_425794	145	22	found	find	VBN
10_1101-2021_01_07_425794	145	23	to	to	TO
10_1101-2021_01_07_425794	145	24	affect	affect	VB
10_1101-2021_01_07_425794	145	25	the	the	DT
10_1101-2021_01_07_425794	145	26	number	number	NN
10_1101-2021_01_07_425794	145	27	of	of	IN
10_1101-2021_01_07_425794	145	28	success-	success-	NN
10_1101-2021_01_07_425794	145	29	fully	fully	RB
10_1101-2021_01_07_425794	145	30	aligned	align	VBN
10_1101-2021_01_07_425794	145	31	fragments	fragment	NNS
10_1101-2021_01_07_425794	145	32	for	for	IN
10_1101-2021_01_07_425794	145	33	each	each	DT
10_1101-2021_01_07_425794	145	34	library	library	NN
10_1101-2021_01_07_425794	145	35	(	(	-LRB-
10_1101-2021_01_07_425794	145	36	Supplementary	Supplementary	NNP
10_1101-2021_01_07_425794	145	37	Figure	Figure	NNP
10_1101-2021_01_07_425794	145	38	S1	S1	NNS
10_1101-2021_01_07_425794	145	39	)	)	-RRB-
10_1101-2021_01_07_425794	145	40	.	.	.
10_1101-2021_01_07_425794	146	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	146	2	found	find	VBD
10_1101-2021_01_07_425794	146	3	that	that	IN
10_1101-2021_01_07_425794	146	4	when	when	WRB
10_1101-2021_01_07_425794	146	5	assigning	assign	VBG
10_1101-2021_01_07_425794	146	6	fragments	fragment	NNS
10_1101-2021_01_07_425794	146	7	to	to	IN
10_1101-2021_01_07_425794	146	8	genes	gene	NNS
10_1101-2021_01_07_425794	146	9	using	use	VBG
10_1101-2021_01_07_425794	146	10	the	the	DT
10_1101-2021_01_07_425794	146	11	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	146	12	or	or	CC
10_1101-2021_01_07_425794	146	13	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	146	14	-	-	HYPH
10_1101-2021_01_07_425794	146	15	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	146	16	annotation	annotation	NN
10_1101-2021_01_07_425794	146	17	,	,	,
10_1101-2021_01_07_425794	146	18	more	more	RBR
10_1101-2021_01_07_425794	146	19	frag-	frag-	NN
10_1101-2021_01_07_425794	146	20	ments	ment	NNS
10_1101-2021_01_07_425794	146	21	were	be	VBD
10_1101-2021_01_07_425794	146	22	unable	unable	JJ
10_1101-2021_01_07_425794	146	23	to	to	TO
10_1101-2021_01_07_425794	146	24	be	be	VB
10_1101-2021_01_07_425794	146	25	assigned	assign	VBN
10_1101-2021_01_07_425794	146	26	because	because	IN
10_1101-2021_01_07_425794	146	27	they	-PRON-	PRP
10_1101-2021_01_07_425794	146	28	did	do	VBD
10_1101-2021_01_07_425794	146	29	not	not	RB
10_1101-2021_01_07_425794	146	30	overlap	overlap	VB
10_1101-2021_01_07_425794	146	31	any	any	DT
10_1101-2021_01_07_425794	146	32	genes	gene	NNS
10_1101-2021_01_07_425794	146	33	(	(	-LRB-
10_1101-2021_01_07_425794	146	34	ie	ie	FW
10_1101-2021_01_07_425794	146	35	.	.	.
10_1101-2021_01_07_425794	147	1	failed	fail	VBD
10_1101-2021_01_07_425794	147	2	to	to	TO
10_1101-2021_01_07_425794	147	3	overlap	overlap	VB
10_1101-2021_01_07_425794	147	4	any	any	DT
10_1101-2021_01_07_425794	147	5	exons	exon	NNS
10_1101-2021_01_07_425794	147	6	included	include	VBN
10_1101-2021_01_07_425794	147	7	in	in	IN
10_1101-2021_01_07_425794	147	8	any	any	DT
10_1101-2021_01_07_425794	147	9	genes	gene	NNS
10_1101-2021_01_07_425794	147	10	)	)	-RRB-
10_1101-2021_01_07_425794	147	11	,	,	,
10_1101-2021_01_07_425794	147	12	despite	despite	IN
10_1101-2021_01_07_425794	147	13	there	there	EX
10_1101-2021_01_07_425794	147	14	are	be	VBP
10_1101-2021_01_07_425794	147	15	more	more	JJR
10_1101-2021_01_07_425794	147	16	genes	gene	NNS
10_1101-2021_01_07_425794	147	17	included	include	VBN
10_1101-2021_01_07_425794	147	18	in	in	IN
10_1101-2021_01_07_425794	147	19	these	these	DT
10_1101-2021_01_07_425794	147	20	annotations	annotation	NNS
10_1101-2021_01_07_425794	147	21	compared	compare	VBN
10_1101-2021_01_07_425794	147	22	to	to	IN
10_1101-2021_01_07_425794	147	23	the	the	DT
10_1101-2021_01_07_425794	147	24	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	147	25	-	-	HYPH
10_1101-2021_01_07_425794	147	26	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	147	27	annotation	annotation	NN
10_1101-2021_01_07_425794	147	28	(	(	-LRB-
10_1101-2021_01_07_425794	147	29	Supplementary	Supplementary	NNP
10_1101-2021_01_07_425794	147	30	Figure	Figure	NNP
10_1101-2021_01_07_425794	147	31	S2	S2	NNP
10_1101-2021_01_07_425794	147	32	)	)	-RRB-
10_1101-2021_01_07_425794	147	33	.	.	.
10_1101-2021_01_07_425794	148	1	This	this	DT
10_1101-2021_01_07_425794	148	2	is	be	VBZ
10_1101-2021_01_07_425794	148	3	particularly	particularly	RB
10_1101-2021_01_07_425794	148	4	the	the	DT
10_1101-2021_01_07_425794	148	5	case	case	NN
10_1101-2021_01_07_425794	148	6	for	for	IN
10_1101-2021_01_07_425794	148	7	the	the	DT
10_1101-2021_01_07_425794	148	8	fragment	fragment	NN
10_1101-2021_01_07_425794	148	9	assignment	assignment	NN
10_1101-2021_01_07_425794	148	10	in	in	IN
10_1101-2021_01_07_425794	148	11	the	the	DT
10_1101-2021_01_07_425794	148	12	human	human	JJ
10_1101-2021_01_07_425794	148	13	brain	brain	NN
10_1101-2021_01_07_425794	148	14	reference	reference	NN
10_1101-2021_01_07_425794	148	15	samples	sample	NNS
10_1101-2021_01_07_425794	148	16	.	.	.
10_1101-2021_01_07_425794	149	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	149	2	also	also	RB
10_1101-2021_01_07_425794	149	3	found	find	VBD
10_1101-2021_01_07_425794	149	4	that	that	IN
10_1101-2021_01_07_425794	149	5	the	the	DT
10_1101-2021_01_07_425794	149	6	use	use	NN
10_1101-2021_01_07_425794	149	7	of	of	IN
10_1101-2021_01_07_425794	149	8	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	149	9	and	and	CC
10_1101-2021_01_07_425794	149	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	149	11	-	-	HYPH
10_1101-2021_01_07_425794	149	12	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	149	13	annotations	annotation	NNS
10_1101-2021_01_07_425794	149	14	led	lead	VBD
10_1101-2021_01_07_425794	149	15	to	to	IN
10_1101-2021_01_07_425794	149	16	more	more	JJR
10_1101-2021_01_07_425794	149	17	fragments	fragment	NNS
10_1101-2021_01_07_425794	149	18	being	be	VBG
10_1101-2021_01_07_425794	149	19	unassigned	unassigne	VBN
10_1101-2021_01_07_425794	149	20	due	due	IN
10_1101-2021_01_07_425794	149	21	to	to	IN
10_1101-2021_01_07_425794	149	22	the	the	DT
10_1101-2021_01_07_425794	149	23	assignment	assignment	NN
10_1101-2021_01_07_425794	149	24	ambiguity	ambiguity	NN
10_1101-2021_01_07_425794	149	25	,	,	,
10_1101-2021_01_07_425794	149	26	ie	ie	NNP
10_1101-2021_01_07_425794	149	27	.	.	.
10_1101-2021_01_07_425794	150	1	a	a	DT
10_1101-2021_01_07_425794	150	2	fragment	fragment	NN
10_1101-2021_01_07_425794	150	3	over-	over-	NN
10_1101-2021_01_07_425794	150	4	laps	lap	VBZ
10_1101-2021_01_07_425794	150	5	more	more	JJR
10_1101-2021_01_07_425794	150	6	than	than	IN
10_1101-2021_01_07_425794	150	7	one	one	CD
10_1101-2021_01_07_425794	150	8	gene	gene	NN
10_1101-2021_01_07_425794	150	9	(	(	-LRB-
10_1101-2021_01_07_425794	150	10	Supplementary	Supplementary	NNP
10_1101-2021_01_07_425794	150	11	Figure	Figure	NNP
10_1101-2021_01_07_425794	150	12	S3	S3	NNP
10_1101-2021_01_07_425794	150	13	)	)	-RRB-
10_1101-2021_01_07_425794	150	14	.	.	.
10_1101-2021_01_07_425794	151	1	This	this	DT
10_1101-2021_01_07_425794	151	2	should	should	MD
10_1101-2021_01_07_425794	151	3	be	be	VB
10_1101-2021_01_07_425794	151	4	because	because	IN
10_1101-2021_01_07_425794	151	5	there	there	EX
10_1101-2021_01_07_425794	151	6	are	be	VBP
10_1101-2021_01_07_425794	151	7	more	more	JJR
10_1101-2021_01_07_425794	151	8	genes	gene	NNS
10_1101-2021_01_07_425794	151	9	that	that	WDT
10_1101-2021_01_07_425794	151	10	overlap	overlap	VBP
10_1101-2021_01_07_425794	151	11	with	with	IN
10_1101-2021_01_07_425794	151	12	each	each	DT
10_1101-2021_01_07_425794	151	13	other	other	JJ
10_1101-2021_01_07_425794	151	14	(	(	-LRB-
10_1101-2021_01_07_425794	151	15	ie	ie	FW
10_1101-2021_01_07_425794	151	16	.	.	.
10_1101-2021_01_07_425794	152	1	exons	exon	NNS
10_1101-2021_01_07_425794	152	2	from	from	IN
10_1101-2021_01_07_425794	152	3	different	different	JJ
10_1101-2021_01_07_425794	152	4	genes	gene	NNS
10_1101-2021_01_07_425794	152	5	overlap	overlap	VBP
10_1101-2021_01_07_425794	152	6	with	with	IN
10_1101-2021_01_07_425794	152	7	each	each	DT
10_1101-2021_01_07_425794	152	8	other	other	JJ
10_1101-2021_01_07_425794	152	9	)	)	-RRB-
10_1101-2021_01_07_425794	152	10	in	in	IN
10_1101-2021_01_07_425794	152	11	the	the	DT
10_1101-2021_01_07_425794	152	12	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	152	13	and	and	CC
10_1101-2021_01_07_425794	152	14	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	152	15	-	-	HYPH
10_1101-2021_01_07_425794	152	16	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	152	17	annotations	annotation	NNS
10_1101-2021_01_07_425794	152	18	compared	compare	VBN
10_1101-2021_01_07_425794	152	19	to	to	IN
10_1101-2021_01_07_425794	152	20	the	the	DT
10_1101-2021_01_07_425794	152	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	152	22	-	-	HYPH
10_1101-2021_01_07_425794	152	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	152	24	annotation	annotation	NN
10_1101-2021_01_07_425794	152	25	.	.	.
10_1101-2021_01_07_425794	153	1	Our	-PRON-	PRP$
10_1101-2021_01_07_425794	153	2	investigation	investigation	NN
10_1101-2021_01_07_425794	153	3	revealed	reveal	VBD
10_1101-2021_01_07_425794	153	4	that	that	IN
10_1101-2021_01_07_425794	153	5	less	less	JJR
10_1101-2021_01_07_425794	153	6	gene	gene	NN
10_1101-2021_01_07_425794	153	7	overlapping	overlapping	NN
10_1101-2021_01_07_425794	153	8	in	in	IN
10_1101-2021_01_07_425794	153	9	the	the	DT
10_1101-2021_01_07_425794	153	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	153	11	-	-	HYPH
10_1101-2021_01_07_425794	153	12	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	153	13	annotation	annotation	NN
10_1101-2021_01_07_425794	153	14	and	and	CC
10_1101-2021_01_07_425794	153	15	better	well	JJR
10_1101-2021_01_07_425794	153	16	compatibility	compatibility	NN
10_1101-2021_01_07_425794	153	17	of	of	IN
10_1101-2021_01_07_425794	153	18	this	this	DT
10_1101-2021_01_07_425794	153	19	annotation	annotation	NN
10_1101-2021_01_07_425794	153	20	with	with	IN
10_1101-2021_01_07_425794	153	21	the	the	DT
10_1101-2021_01_07_425794	153	22	mapped	map	VBN
10_1101-2021_01_07_425794	153	23	fragments	fragment	NNS
10_1101-2021_01_07_425794	153	24	have	have	VBP
10_1101-2021_01_07_425794	153	25	led	lead	VBN
10_1101-2021_01_07_425794	153	26	to	to	IN
10_1101-2021_01_07_425794	153	27	more	more	JJR
10_1101-2021_01_07_425794	153	28	fragments	fragment	NNS
10_1101-2021_01_07_425794	153	29	being	be	VBG
10_1101-2021_01_07_425794	153	30	successfully	successfully	RB
10_1101-2021_01_07_425794	153	31	counted	count	VBN
10_1101-2021_01_07_425794	153	32	for	for	IN
10_1101-2021_01_07_425794	153	33	each	each	DT
10_1101-2021_01_07_425794	153	34	library	library	NN
10_1101-2021_01_07_425794	153	35	in	in	IN
10_1101-2021_01_07_425794	153	36	this	this	DT
10_1101-2021_01_07_425794	153	37	dataset	dataset	NN
10_1101-2021_01_07_425794	153	38	.	.	.
10_1101-2021_01_07_425794	154	1	Given	give	VBN
10_1101-2021_01_07_425794	154	2	10	10	CD
10_1101-2021_01_07_425794	154	3	.CC	.CC	,
10_1101-2021_01_07_425794	154	4	-	-	HYPH
10_1101-2021_01_07_425794	154	5	BY	by	IN
10_1101-2021_01_07_425794	154	6	-	-	HYPH
10_1101-2021_01_07_425794	154	7	NC	NC	NNP
10_1101-2021_01_07_425794	154	8	-	-	HYPH
10_1101-2021_01_07_425794	154	9	ND	ND	NNP
10_1101-2021_01_07_425794	154	10	4.0	4.0	CD
10_1101-2021_01_07_425794	154	11	International	international	JJ
10_1101-2021_01_07_425794	154	12	licensemade	licensemade	NN
10_1101-2021_01_07_425794	154	13	available	available	JJ
10_1101-2021_01_07_425794	154	14	under	under	IN
10_1101-2021_01_07_425794	154	15	a	a	DT
10_1101-2021_01_07_425794	154	16	(	(	-LRB-
10_1101-2021_01_07_425794	154	17	which	which	WDT
10_1101-2021_01_07_425794	154	18	was	be	VBD
10_1101-2021_01_07_425794	154	19	not	not	RB
10_1101-2021_01_07_425794	154	20	certified	certify	VBN
10_1101-2021_01_07_425794	154	21	by	by	IN
10_1101-2021_01_07_425794	154	22	peer	peer	NN
10_1101-2021_01_07_425794	154	23	review	review	NN
10_1101-2021_01_07_425794	154	24	)	)	-RRB-
10_1101-2021_01_07_425794	154	25	is	be	VBZ
10_1101-2021_01_07_425794	154	26	the	the	DT
10_1101-2021_01_07_425794	154	27	author	author	NN
10_1101-2021_01_07_425794	154	28	/	/	SYM
10_1101-2021_01_07_425794	154	29	funder	funder	NN
10_1101-2021_01_07_425794	154	30	,	,	,
10_1101-2021_01_07_425794	154	31	who	who	WP
10_1101-2021_01_07_425794	154	32	has	have	VBZ
10_1101-2021_01_07_425794	154	33	granted	grant	VBN
10_1101-2021_01_07_425794	154	34	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	154	35	a	a	DT
10_1101-2021_01_07_425794	154	36	license	license	NN
10_1101-2021_01_07_425794	154	37	to	to	TO
10_1101-2021_01_07_425794	154	38	display	display	VB
10_1101-2021_01_07_425794	154	39	the	the	DT
10_1101-2021_01_07_425794	154	40	preprint	preprint	NN
10_1101-2021_01_07_425794	154	41	in	in	IN
10_1101-2021_01_07_425794	154	42	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	154	43	.	.	.
10_1101-2021_01_07_425794	155	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	155	2	is	be	VBZ
10_1101-2021_01_07_425794	155	3	The	the	DT
10_1101-2021_01_07_425794	155	4	copyright	copyright	NN
10_1101-2021_01_07_425794	155	5	holder	holder	NN
10_1101-2021_01_07_425794	155	6	for	for	IN
10_1101-2021_01_07_425794	155	7	this	this	DT
10_1101-2021_01_07_425794	155	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	155	9	version	version	NN
10_1101-2021_01_07_425794	155	10	posted	post	VBD
10_1101-2021_01_07_425794	155	11	January	January	NNP
10_1101-2021_01_07_425794	155	12	8	8	CD
10_1101-2021_01_07_425794	155	13	,	,	,
10_1101-2021_01_07_425794	155	14	2021	2021	CD
10_1101-2021_01_07_425794	155	15	.	.	.
10_1101-2021_01_07_425794	155	16	;	;	:
10_1101-2021_01_07_425794	155	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	155	18	:	:	:
10_1101-2021_01_07_425794	155	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	155	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	155	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	155	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	CD
10_1101-2021_01_07_425794	155	23	−10	−10	NNP
10_1101-2021_01_07_425794	155	24	−5	−5	NNP
10_1101-2021_01_07_425794	155	25	0	0	CD
10_1101-2021_01_07_425794	155	26	5	5	CD
10_1101-2021_01_07_425794	155	27	10	10	CD
10_1101-2021_01_07_425794	155	28	15	15	CD
10_1101-2021_01_07_425794	155	29	lo	lo	IN
10_1101-2021_01_07_425794	155	30	g2	g2	NNP
10_1101-2021_01_07_425794	155	31	R	r	NN
10_1101-2021_01_07_425794	155	32	P	p	NN
10_1101-2021_01_07_425794	155	33	K	k	NN
10_1101-2021_01_07_425794	155	34	M	M	NNP
10_1101-2021_01_07_425794	155	35	A	A	NNP
10_1101-2021_01_07_425794	155	36	−1	−1	NNP
10_1101-2021_01_07_425794	155	37	A	A	NNP
10_1101-2021_01_07_425794	155	38	−2	−2	NNP
10_1101-2021_01_07_425794	155	39	A	a	NN
10_1101-2021_01_07_425794	155	40	−3	−3	NNP
10_1101-2021_01_07_425794	155	41	A	A	NNP
10_1101-2021_01_07_425794	155	42	−4	−4	NNP
10_1101-2021_01_07_425794	155	43	B	B	NNP
10_1101-2021_01_07_425794	155	44	−1	−1	NNP
10_1101-2021_01_07_425794	155	45	B	B	NNP
10_1101-2021_01_07_425794	155	46	−2	−2	NNP
10_1101-2021_01_07_425794	155	47	B	B	NNP
10_1101-2021_01_07_425794	155	48	−3	−3	NNP
10_1101-2021_01_07_425794	155	49	B	B	NNP
10_1101-2021_01_07_425794	155	50	−4	−4	NNP
10_1101-2021_01_07_425794	155	51	C	C	NNP
10_1101-2021_01_07_425794	155	52	−1	−1	NNP
10_1101-2021_01_07_425794	155	53	C	C	NNP
10_1101-2021_01_07_425794	155	54	−2	−2	NNP
10_1101-2021_01_07_425794	155	55	C	C	NNP
10_1101-2021_01_07_425794	155	56	−3	−3	NNP
10_1101-2021_01_07_425794	155	57	C	C	NNP
10_1101-2021_01_07_425794	155	58	−4	−4	NNP
10_1101-2021_01_07_425794	155	59	D	D	NNP
10_1101-2021_01_07_425794	155	60	−1	−1	NNP
10_1101-2021_01_07_425794	155	61	D	D	NNP
10_1101-2021_01_07_425794	155	62	−2	−2	NNP
10_1101-2021_01_07_425794	155	63	D	D	NNP
10_1101-2021_01_07_425794	155	64	−3	−3	NNP
10_1101-2021_01_07_425794	155	65	D	D	NNP
10_1101-2021_01_07_425794	155	66	−4	−4	NNP
10_1101-2021_01_07_425794	155	67	Key	Key	NNP
10_1101-2021_01_07_425794	155	68	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	155	69	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	155	70	-	-	HYPH
10_1101-2021_01_07_425794	155	71	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	155	72	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	155	73	-	-	HYPH
10_1101-2021_01_07_425794	155	74	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	155	75	Figure	Figure	NNP
10_1101-2021_01_07_425794	155	76	3	3	CD
10_1101-2021_01_07_425794	155	77	:	:	:
10_1101-2021_01_07_425794	155	78	Boxplots	boxplot	NNS
10_1101-2021_01_07_425794	155	79	comparing	compare	VBG
10_1101-2021_01_07_425794	155	80	the	the	DT
10_1101-2021_01_07_425794	155	81	intensity	intensity	NN
10_1101-2021_01_07_425794	155	82	range	range	NN
10_1101-2021_01_07_425794	155	83	of	of	IN
10_1101-2021_01_07_425794	155	84	gene	gene	NN
10_1101-2021_01_07_425794	155	85	expression	expression	NN
10_1101-2021_01_07_425794	155	86	between	between	IN
10_1101-2021_01_07_425794	155	87	the	the	DT
10_1101-2021_01_07_425794	155	88	three	three	CD
10_1101-2021_01_07_425794	155	89	annotations	annotation	NNS
10_1101-2021_01_07_425794	155	90	.	.	.
10_1101-2021_01_07_425794	156	1	All	all	PDT
10_1101-2021_01_07_425794	156	2	the	the	DT
10_1101-2021_01_07_425794	156	3	genes	gene	NNS
10_1101-2021_01_07_425794	156	4	from	from	IN
10_1101-2021_01_07_425794	156	5	each	each	DT
10_1101-2021_01_07_425794	156	6	annotation	annotation	NN
10_1101-2021_01_07_425794	156	7	were	be	VBD
10_1101-2021_01_07_425794	156	8	included	include	VBN
10_1101-2021_01_07_425794	156	9	in	in	IN
10_1101-2021_01_07_425794	156	10	the	the	DT
10_1101-2021_01_07_425794	156	11	plots	plot	NNS
10_1101-2021_01_07_425794	156	12	.	.	.
10_1101-2021_01_07_425794	157	1	Raw	raw	JJ
10_1101-2021_01_07_425794	157	2	read	read	VBD
10_1101-2021_01_07_425794	157	3	counts	count	NNS
10_1101-2021_01_07_425794	157	4	of	of	IN
10_1101-2021_01_07_425794	157	5	genes	gene	NNS
10_1101-2021_01_07_425794	157	6	were	be	VBD
10_1101-2021_01_07_425794	157	7	transformed	transform	VBN
10_1101-2021_01_07_425794	157	8	to	to	IN
10_1101-2021_01_07_425794	157	9	log2FPKM	log2fpkm	CD
10_1101-2021_01_07_425794	157	10	values	value	NNS
10_1101-2021_01_07_425794	157	11	.	.	.
10_1101-2021_01_07_425794	158	1	A	a	DT
10_1101-2021_01_07_425794	158	2	prior	prior	JJ
10_1101-2021_01_07_425794	158	3	count	count	NN
10_1101-2021_01_07_425794	158	4	of	of	IN
10_1101-2021_01_07_425794	158	5	0.5	0.5	CD
10_1101-2021_01_07_425794	158	6	was	be	VBD
10_1101-2021_01_07_425794	158	7	added	add	VBN
10_1101-2021_01_07_425794	158	8	to	to	IN
10_1101-2021_01_07_425794	158	9	raw	raw	JJ
10_1101-2021_01_07_425794	158	10	counts	count	NNS
10_1101-2021_01_07_425794	158	11	to	to	TO
10_1101-2021_01_07_425794	158	12	avoid	avoid	VB
10_1101-2021_01_07_425794	158	13	log	log	NN
10_1101-2021_01_07_425794	158	14	-	-	HYPH
10_1101-2021_01_07_425794	158	15	transformation	transformation	NN
10_1101-2021_01_07_425794	158	16	of	of	IN
10_1101-2021_01_07_425794	158	17	zero	zero	CD
10_1101-2021_01_07_425794	158	18	.	.	.
10_1101-2021_01_07_425794	159	1	that	that	IN
10_1101-2021_01_07_425794	159	2	both	both	CC
10_1101-2021_01_07_425794	159	3	the	the	DT
10_1101-2021_01_07_425794	159	4	Universal	Universal	NNP
10_1101-2021_01_07_425794	159	5	Human	Human	NNP
10_1101-2021_01_07_425794	159	6	Reference	Reference	NNP
10_1101-2021_01_07_425794	159	7	and	and	CC
10_1101-2021_01_07_425794	159	8	Human	Human	NNP
10_1101-2021_01_07_425794	159	9	Brain	Brain	NNP
10_1101-2021_01_07_425794	159	10	Reference	Reference	NNP
10_1101-2021_01_07_425794	159	11	samples	sample	NNS
10_1101-2021_01_07_425794	159	12	used	use	VBN
10_1101-2021_01_07_425794	159	13	in	in	IN
10_1101-2021_01_07_425794	159	14	this	this	DT
10_1101-2021_01_07_425794	159	15	study	study	NN
10_1101-2021_01_07_425794	159	16	are	be	VBP
10_1101-2021_01_07_425794	159	17	known	know	VBN
10_1101-2021_01_07_425794	159	18	to	to	TO
10_1101-2021_01_07_425794	159	19	contain	contain	VB
10_1101-2021_01_07_425794	159	20	a	a	DT
10_1101-2021_01_07_425794	159	21	very	very	RB
10_1101-2021_01_07_425794	159	22	high	high	JJ
10_1101-2021_01_07_425794	159	23	number	number	NN
10_1101-2021_01_07_425794	159	24	of	of	IN
10_1101-2021_01_07_425794	159	25	expressed	express	VBN
10_1101-2021_01_07_425794	159	26	genes	gene	NNS
10_1101-2021_01_07_425794	159	27	and	and	CC
10_1101-2021_01_07_425794	159	28	the	the	DT
10_1101-2021_01_07_425794	159	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	159	30	-	-	HYPH
10_1101-2021_01_07_425794	159	31	seq	seq	NN
10_1101-2021_01_07_425794	159	32	data	datum	NNS
10_1101-2021_01_07_425794	159	33	generated	generate	VBN
10_1101-2021_01_07_425794	159	34	from	from	IN
10_1101-2021_01_07_425794	159	35	these	these	DT
10_1101-2021_01_07_425794	159	36	samples	sample	NNS
10_1101-2021_01_07_425794	159	37	are	be	VBP
10_1101-2021_01_07_425794	159	38	expected	expect	VBN
10_1101-2021_01_07_425794	159	39	to	to	TO
10_1101-2021_01_07_425794	159	40	cover	cover	VB
10_1101-2021_01_07_425794	159	41	most	most	JJS
10_1101-2021_01_07_425794	159	42	of	of	IN
10_1101-2021_01_07_425794	159	43	the	the	DT
10_1101-2021_01_07_425794	159	44	human	human	NN
10_1101-2021_01_07_425794	159	45	transcrip-	transcrip-	XX
10_1101-2021_01_07_425794	159	46	tome	tome	NNP
10_1101-2021_01_07_425794	159	47	,	,	,
10_1101-2021_01_07_425794	159	48	our	-PRON-	PRP$
10_1101-2021_01_07_425794	159	49	analysis	analysis	NN
10_1101-2021_01_07_425794	159	50	suggests	suggest	VBZ
10_1101-2021_01_07_425794	159	51	that	that	IN
10_1101-2021_01_07_425794	159	52	the	the	DT
10_1101-2021_01_07_425794	159	53	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	159	54	-	-	HYPH
10_1101-2021_01_07_425794	159	55	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	159	56	annotation	annotation	NN
10_1101-2021_01_07_425794	159	57	is	be	VBZ
10_1101-2021_01_07_425794	159	58	likely	likely	JJ
10_1101-2021_01_07_425794	159	59	to	to	TO
10_1101-2021_01_07_425794	159	60	contain	contain	VB
10_1101-2021_01_07_425794	159	61	more	more	JJR
10_1101-2021_01_07_425794	159	62	transcribed	transcribe	VBN
10_1101-2021_01_07_425794	159	63	region	region	NN
10_1101-2021_01_07_425794	159	64	in	in	IN
10_1101-2021_01_07_425794	159	65	the	the	DT
10_1101-2021_01_07_425794	159	66	genome	genome	NN
10_1101-2021_01_07_425794	159	67	than	than	IN
10_1101-2021_01_07_425794	159	68	the	the	DT
10_1101-2021_01_07_425794	159	69	other	other	JJ
10_1101-2021_01_07_425794	159	70	two	two	CD
10_1101-2021_01_07_425794	159	71	annotations	annotation	NNS
10_1101-2021_01_07_425794	159	72	in	in	IN
10_1101-2021_01_07_425794	159	73	general	general	JJ
10_1101-2021_01_07_425794	159	74	.	.	.
10_1101-2021_01_07_425794	160	1	3.3	3.3	CD
10_1101-2021_01_07_425794	160	2	Intensity	intensity	NN
10_1101-2021_01_07_425794	160	3	range	range	NN
10_1101-2021_01_07_425794	160	4	of	of	IN
10_1101-2021_01_07_425794	160	5	gene	gene	NN
10_1101-2021_01_07_425794	160	6	expression	expression	NN
10_1101-2021_01_07_425794	160	7	We	-PRON-	PRP
10_1101-2021_01_07_425794	160	8	examined	examine	VBD
10_1101-2021_01_07_425794	160	9	if	if	IN
10_1101-2021_01_07_425794	160	10	the	the	DT
10_1101-2021_01_07_425794	160	11	gene	gene	NN
10_1101-2021_01_07_425794	160	12	annotation	annotation	NN
10_1101-2021_01_07_425794	160	13	choice	choice	NN
10_1101-2021_01_07_425794	160	14	has	have	VBZ
10_1101-2021_01_07_425794	160	15	an	an	DT
10_1101-2021_01_07_425794	160	16	impact	impact	NN
10_1101-2021_01_07_425794	160	17	on	on	IN
10_1101-2021_01_07_425794	160	18	the	the	DT
10_1101-2021_01_07_425794	160	19	range	range	NN
10_1101-2021_01_07_425794	160	20	of	of	IN
10_1101-2021_01_07_425794	160	21	gene	gene	NN
10_1101-2021_01_07_425794	160	22	expression	expression	NN
10_1101-2021_01_07_425794	160	23	levels	level	NNS
10_1101-2021_01_07_425794	160	24	in	in	IN
10_1101-2021_01_07_425794	160	25	the	the	DT
10_1101-2021_01_07_425794	160	26	RNA	RNA	NNP
10_1101-2021_01_07_425794	160	27	-	-	HYPH
10_1101-2021_01_07_425794	160	28	seq	seq	NN
10_1101-2021_01_07_425794	160	29	data	datum	NNS
10_1101-2021_01_07_425794	160	30	.	.	.
10_1101-2021_01_07_425794	161	1	Raw	raw	JJ
10_1101-2021_01_07_425794	161	2	gene	gene	NN
10_1101-2021_01_07_425794	161	3	counts	count	NNS
10_1101-2021_01_07_425794	161	4	of	of	IN
10_1101-2021_01_07_425794	161	5	the	the	DT
10_1101-2021_01_07_425794	161	6	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	161	7	data	datum	NNS
10_1101-2021_01_07_425794	161	8	were	be	VBD
10_1101-2021_01_07_425794	161	9	converted	convert	VBN
10_1101-2021_01_07_425794	161	10	to	to	IN
10_1101-2021_01_07_425794	161	11	log2FPKM	log2FPKM	NNP
10_1101-2021_01_07_425794	161	12	(	(	-LRB-
10_1101-2021_01_07_425794	161	13	log2	log2	NN
10_1101-2021_01_07_425794	161	14	fragments	fragment	NNS
10_1101-2021_01_07_425794	161	15	per	per	IN
10_1101-2021_01_07_425794	161	16	kilo	kilo	NNP
10_1101-2021_01_07_425794	161	17	exonic	exonic	JJ
10_1101-2021_01_07_425794	161	18	bases	basis	NNS
10_1101-2021_01_07_425794	161	19	per	per	IN
10_1101-2021_01_07_425794	161	20	million	million	CD
10_1101-2021_01_07_425794	161	21	mapped	map	VBN
10_1101-2021_01_07_425794	161	22	fragments	fragment	NNS
10_1101-2021_01_07_425794	161	23	)	)	-RRB-
10_1101-2021_01_07_425794	161	24	values	value	NNS
10_1101-2021_01_07_425794	161	25	for	for	IN
10_1101-2021_01_07_425794	161	26	all	all	PDT
10_1101-2021_01_07_425794	161	27	the	the	DT
10_1101-2021_01_07_425794	161	28	genes	gene	NNS
10_1101-2021_01_07_425794	161	29	included	include	VBN
10_1101-2021_01_07_425794	161	30	in	in	IN
10_1101-2021_01_07_425794	161	31	each	each	DT
10_1101-2021_01_07_425794	161	32	annotation	annotation	NN
10_1101-2021_01_07_425794	161	33	.	.	.
10_1101-2021_01_07_425794	162	1	A	a	DT
10_1101-2021_01_07_425794	162	2	prior	prior	JJ
10_1101-2021_01_07_425794	162	3	count	count	NN
10_1101-2021_01_07_425794	162	4	of	of	IN
10_1101-2021_01_07_425794	162	5	0.5	0.5	CD
10_1101-2021_01_07_425794	162	6	was	be	VBD
10_1101-2021_01_07_425794	162	7	added	add	VBN
10_1101-2021_01_07_425794	162	8	to	to	IN
10_1101-2021_01_07_425794	162	9	the	the	DT
10_1101-2021_01_07_425794	162	10	raw	raw	JJ
10_1101-2021_01_07_425794	162	11	counts	count	NNS
10_1101-2021_01_07_425794	162	12	to	to	TO
10_1101-2021_01_07_425794	162	13	avoid	avoid	VB
10_1101-2021_01_07_425794	162	14	log	log	NN
10_1101-2021_01_07_425794	162	15	-	-	HYPH
10_1101-2021_01_07_425794	162	16	transformation	transformation	NN
10_1101-2021_01_07_425794	162	17	of	of	IN
10_1101-2021_01_07_425794	162	18	zero	zero	CD
10_1101-2021_01_07_425794	162	19	.	.	.
10_1101-2021_01_07_425794	163	1	Figure	figure	NN
10_1101-2021_01_07_425794	163	2	3	3	CD
10_1101-2021_01_07_425794	163	3	shows	show	VBZ
10_1101-2021_01_07_425794	163	4	that	that	IN
10_1101-2021_01_07_425794	163	5	the	the	DT
10_1101-2021_01_07_425794	163	6	two	two	CD
10_1101-2021_01_07_425794	163	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	163	8	annotations	annotation	NNS
10_1101-2021_01_07_425794	163	9	exhibit	exhibit	VBP
10_1101-2021_01_07_425794	163	10	a	a	DT
10_1101-2021_01_07_425794	163	11	desirable	desirable	JJ
10_1101-2021_01_07_425794	163	12	larger	large	JJR
10_1101-2021_01_07_425794	163	13	intensity	intensity	NN
10_1101-2021_01_07_425794	163	14	range	range	NN
10_1101-2021_01_07_425794	163	15	of	of	IN
10_1101-2021_01_07_425794	163	16	gene	gene	NN
10_1101-2021_01_07_425794	163	17	expression	expression	NN
10_1101-2021_01_07_425794	163	18	than	than	IN
10_1101-2021_01_07_425794	163	19	the	the	DT
10_1101-2021_01_07_425794	163	20	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	163	21	annotation	annotation	NN
10_1101-2021_01_07_425794	163	22	,	,	,
10_1101-2021_01_07_425794	163	23	as	as	IN
10_1101-2021_01_07_425794	163	24	shown	show	VBN
10_1101-2021_01_07_425794	163	25	by	by	IN
10_1101-2021_01_07_425794	163	26	the	the	DT
10_1101-2021_01_07_425794	163	27	larger	large	JJR
10_1101-2021_01_07_425794	163	28	boxes	box	NNS
10_1101-2021_01_07_425794	163	29	in	in	IN
10_1101-2021_01_07_425794	163	30	the	the	DT
10_1101-2021_01_07_425794	163	31	boxplots	boxplot	NNS
10_1101-2021_01_07_425794	163	32	.	.	.
10_1101-2021_01_07_425794	164	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	164	2	is	be	VBZ
10_1101-2021_01_07_425794	164	3	surprising	surprising	JJ
10_1101-2021_01_07_425794	164	4	to	to	TO
10_1101-2021_01_07_425794	164	5	see	see	VB
10_1101-2021_01_07_425794	164	6	that	that	IN
10_1101-2021_01_07_425794	164	7	the	the	DT
10_1101-2021_01_07_425794	164	8	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	164	9	genes	gene	NNS
10_1101-2021_01_07_425794	164	10	have	have	VBP
10_1101-2021_01_07_425794	164	11	the	the	DT
10_1101-2021_01_07_425794	164	12	smallest	small	JJS
10_1101-2021_01_07_425794	164	13	intensity	intensity	NN
10_1101-2021_01_07_425794	164	14	ranges	range	VBZ
10_1101-2021_01_07_425794	164	15	in	in	IN
10_1101-2021_01_07_425794	164	16	all	all	PDT
10_1101-2021_01_07_425794	164	17	the	the	DT
10_1101-2021_01_07_425794	164	18	libraries	library	NNS
10_1101-2021_01_07_425794	164	19	,	,	,
10_1101-2021_01_07_425794	164	20	give	give	VBP
10_1101-2021_01_07_425794	164	21	that	that	IN
10_1101-2021_01_07_425794	164	22	the	the	DT
10_1101-2021_01_07_425794	164	23	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	164	24	annotation	annotation	NN
10_1101-2021_01_07_425794	164	25	contains	contain	VBZ
10_1101-2021_01_07_425794	164	26	the	the	DT
10_1101-2021_01_07_425794	164	27	largest	large	JJS
10_1101-2021_01_07_425794	164	28	number	number	NN
10_1101-2021_01_07_425794	164	29	of	of	IN
10_1101-2021_01_07_425794	164	30	genes	gene	NNS
10_1101-2021_01_07_425794	164	31	in	in	IN
10_1101-2021_01_07_425794	164	32	all	all	PDT
10_1101-2021_01_07_425794	164	33	the	the	DT
10_1101-2021_01_07_425794	164	34	three	three	CD
10_1101-2021_01_07_425794	164	35	annotations	annotation	NNS
10_1101-2021_01_07_425794	164	36	being	be	VBG
10_1101-2021_01_07_425794	164	37	examined	examine	VBN
10_1101-2021_01_07_425794	164	38	.	.	.
10_1101-2021_01_07_425794	165	1	In	in	IN
10_1101-2021_01_07_425794	165	2	addition	addition	NN
10_1101-2021_01_07_425794	165	3	to	to	IN
10_1101-2021_01_07_425794	165	4	the	the	DT
10_1101-2021_01_07_425794	165	5	large	large	JJ
10_1101-2021_01_07_425794	165	6	intensity	intensity	NN
10_1101-2021_01_07_425794	165	7	range	range	NN
10_1101-2021_01_07_425794	165	8	,	,	,
10_1101-2021_01_07_425794	165	9	the	the	DT
10_1101-2021_01_07_425794	165	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	165	11	-	-	HYPH
10_1101-2021_01_07_425794	165	12	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	165	13	genes	gene	NNS
10_1101-2021_01_07_425794	165	14	were	be	VBD
10_1101-2021_01_07_425794	165	15	also	also	RB
10_1101-2021_01_07_425794	165	16	found	find	VBN
10_1101-2021_01_07_425794	165	17	to	to	TO
10_1101-2021_01_07_425794	165	18	have	have	VB
10_1101-2021_01_07_425794	165	19	a	a	DT
10_1101-2021_01_07_425794	165	20	markedly	markedly	RB
10_1101-2021_01_07_425794	165	21	higher	high	JJR
10_1101-2021_01_07_425794	165	22	median	median	JJ
10_1101-2021_01_07_425794	165	23	expression	expression	NN
10_1101-2021_01_07_425794	165	24	level	level	NN
10_1101-2021_01_07_425794	165	25	than	than	IN
10_1101-2021_01_07_425794	165	26	genes	gene	NNS
10_1101-2021_01_07_425794	165	27	in	in	IN
10_1101-2021_01_07_425794	165	28	the	the	DT
10_1101-2021_01_07_425794	165	29	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	165	30	-	-	HYPH
10_1101-2021_01_07_425794	165	31	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	165	32	and	and	CC
10_1101-2021_01_07_425794	165	33	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	165	34	annotations	annotation	NNS
10_1101-2021_01_07_425794	165	35	.	.	.
10_1101-2021_01_07_425794	166	1	11	11	CD
10_1101-2021_01_07_425794	166	2	.CC	.CC	:
10_1101-2021_01_07_425794	166	3	-	-	HYPH
10_1101-2021_01_07_425794	166	4	BY	by	IN
10_1101-2021_01_07_425794	166	5	-	-	HYPH
10_1101-2021_01_07_425794	166	6	NC	NC	NNP
10_1101-2021_01_07_425794	166	7	-	-	HYPH
10_1101-2021_01_07_425794	166	8	ND	ND	NNP
10_1101-2021_01_07_425794	166	9	4.0	4.0	CD
10_1101-2021_01_07_425794	166	10	International	international	JJ
10_1101-2021_01_07_425794	166	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	166	12	available	available	JJ
10_1101-2021_01_07_425794	166	13	under	under	IN
10_1101-2021_01_07_425794	166	14	a	a	DT
10_1101-2021_01_07_425794	166	15	(	(	-LRB-
10_1101-2021_01_07_425794	166	16	which	which	WDT
10_1101-2021_01_07_425794	166	17	was	be	VBD
10_1101-2021_01_07_425794	166	18	not	not	RB
10_1101-2021_01_07_425794	166	19	certified	certify	VBN
10_1101-2021_01_07_425794	166	20	by	by	IN
10_1101-2021_01_07_425794	166	21	peer	peer	NN
10_1101-2021_01_07_425794	166	22	review	review	NN
10_1101-2021_01_07_425794	166	23	)	)	-RRB-
10_1101-2021_01_07_425794	166	24	is	be	VBZ
10_1101-2021_01_07_425794	166	25	the	the	DT
10_1101-2021_01_07_425794	166	26	author	author	NN
10_1101-2021_01_07_425794	166	27	/	/	SYM
10_1101-2021_01_07_425794	166	28	funder	funder	NN
10_1101-2021_01_07_425794	166	29	,	,	,
10_1101-2021_01_07_425794	166	30	who	who	WP
10_1101-2021_01_07_425794	166	31	has	have	VBZ
10_1101-2021_01_07_425794	166	32	granted	grant	VBN
10_1101-2021_01_07_425794	166	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	166	34	a	a	DT
10_1101-2021_01_07_425794	166	35	license	license	NN
10_1101-2021_01_07_425794	166	36	to	to	TO
10_1101-2021_01_07_425794	166	37	display	display	VB
10_1101-2021_01_07_425794	166	38	the	the	DT
10_1101-2021_01_07_425794	166	39	preprint	preprint	NN
10_1101-2021_01_07_425794	166	40	in	in	IN
10_1101-2021_01_07_425794	166	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	166	42	.	.	.
10_1101-2021_01_07_425794	167	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	167	2	is	be	VBZ
10_1101-2021_01_07_425794	167	3	The	the	DT
10_1101-2021_01_07_425794	167	4	copyright	copyright	NN
10_1101-2021_01_07_425794	167	5	holder	holder	NN
10_1101-2021_01_07_425794	167	6	for	for	IN
10_1101-2021_01_07_425794	167	7	this	this	DT
10_1101-2021_01_07_425794	167	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	167	9	version	version	NN
10_1101-2021_01_07_425794	167	10	posted	post	VBD
10_1101-2021_01_07_425794	167	11	January	January	NNP
10_1101-2021_01_07_425794	167	12	8	8	CD
10_1101-2021_01_07_425794	167	13	,	,	,
10_1101-2021_01_07_425794	167	14	2021	2021	CD
10_1101-2021_01_07_425794	167	15	.	.	.
10_1101-2021_01_07_425794	167	16	;	;	:
10_1101-2021_01_07_425794	167	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	167	18	:	:	:
10_1101-2021_01_07_425794	167	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	167	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	167	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	167	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	167	23	3.4	3.4	CD
10_1101-2021_01_07_425794	167	24	Gene	gene	NN
10_1101-2021_01_07_425794	167	25	annotation	annotation	NN
10_1101-2021_01_07_425794	167	26	discrepancy	discrepancy	NN
10_1101-2021_01_07_425794	167	27	after	after	IN
10_1101-2021_01_07_425794	167	28	expression	expression	NN
10_1101-2021_01_07_425794	167	29	filtering	filter	VBG
10_1101-2021_01_07_425794	167	30	As	as	IN
10_1101-2021_01_07_425794	167	31	it	-PRON-	PRP
10_1101-2021_01_07_425794	167	32	is	be	VBZ
10_1101-2021_01_07_425794	167	33	a	a	DT
10_1101-2021_01_07_425794	167	34	common	common	JJ
10_1101-2021_01_07_425794	167	35	practice	practice	NN
10_1101-2021_01_07_425794	167	36	to	to	TO
10_1101-2021_01_07_425794	167	37	filter	filter	VB
10_1101-2021_01_07_425794	167	38	out	out	RP
10_1101-2021_01_07_425794	167	39	genes	gene	NNS
10_1101-2021_01_07_425794	167	40	that	that	WDT
10_1101-2021_01_07_425794	167	41	are	be	VBP
10_1101-2021_01_07_425794	167	42	deemed	deem	VBN
10_1101-2021_01_07_425794	167	43	as	as	IN
10_1101-2021_01_07_425794	167	44	lowly	lowly	RB
10_1101-2021_01_07_425794	167	45	expressed	express	VBN
10_1101-2021_01_07_425794	167	46	,	,	,
10_1101-2021_01_07_425794	167	47	or	or	CC
10_1101-2021_01_07_425794	167	48	are	be	VBP
10_1101-2021_01_07_425794	167	49	completely	completely	RB
10_1101-2021_01_07_425794	167	50	absent	absent	JJ
10_1101-2021_01_07_425794	167	51	in	in	IN
10_1101-2021_01_07_425794	167	52	an	an	DT
10_1101-2021_01_07_425794	167	53	RNA	RNA	NNP
10_1101-2021_01_07_425794	167	54	-	-	HYPH
10_1101-2021_01_07_425794	167	55	seq	seq	NN
10_1101-2021_01_07_425794	167	56	data	data	NN
10_1101-2021_01_07_425794	167	57	analysis	analysis	NN
10_1101-2021_01_07_425794	167	58	[	[	-LRB-
10_1101-2021_01_07_425794	167	59	2	2	CD
10_1101-2021_01_07_425794	167	60	]	]	-RRB-
10_1101-2021_01_07_425794	167	61	,	,	,
10_1101-2021_01_07_425794	167	62	we	-PRON-	PRP
10_1101-2021_01_07_425794	167	63	also	also	RB
10_1101-2021_01_07_425794	167	64	set	set	VBD
10_1101-2021_01_07_425794	167	65	out	out	RP
10_1101-2021_01_07_425794	167	66	to	to	TO
10_1101-2021_01_07_425794	167	67	assess	assess	VB
10_1101-2021_01_07_425794	167	68	the	the	DT
10_1101-2021_01_07_425794	167	69	differences	difference	NNS
10_1101-2021_01_07_425794	167	70	between	between	IN
10_1101-2021_01_07_425794	167	71	alternative	alternative	JJ
10_1101-2021_01_07_425794	167	72	annotations	annotation	NNS
10_1101-2021_01_07_425794	167	73	after	after	IN
10_1101-2021_01_07_425794	167	74	excluding	exclude	VBG
10_1101-2021_01_07_425794	167	75	such	such	JJ
10_1101-2021_01_07_425794	167	76	genes	gene	NNS
10_1101-2021_01_07_425794	167	77	.	.	.
10_1101-2021_01_07_425794	168	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	168	2	excluded	exclude	VBD
10_1101-2021_01_07_425794	168	3	those	those	DT
10_1101-2021_01_07_425794	168	4	genes	gene	NNS
10_1101-2021_01_07_425794	168	5	that	that	WDT
10_1101-2021_01_07_425794	168	6	failed	fail	VBD
10_1101-2021_01_07_425794	168	7	to	to	TO
10_1101-2021_01_07_425794	168	8	have	have	VB
10_1101-2021_01_07_425794	168	9	at	at	RB
10_1101-2021_01_07_425794	168	10	least	least	RBS
10_1101-2021_01_07_425794	168	11	0.5	0.5	CD
10_1101-2021_01_07_425794	168	12	CPM	cpm	NN
10_1101-2021_01_07_425794	168	13	(	(	-LRB-
10_1101-2021_01_07_425794	168	14	counts	count	NNS
10_1101-2021_01_07_425794	168	15	per	per	IN
10_1101-2021_01_07_425794	168	16	million	million	CD
10_1101-2021_01_07_425794	168	17	)	)	-RRB-
10_1101-2021_01_07_425794	168	18	in	in	IN
10_1101-2021_01_07_425794	168	19	at	at	RB
10_1101-2021_01_07_425794	168	20	least	least	RBS
10_1101-2021_01_07_425794	168	21	four	four	CD
10_1101-2021_01_07_425794	168	22	libraries	library	NNS
10_1101-2021_01_07_425794	168	23	(	(	-LRB-
10_1101-2021_01_07_425794	168	24	each	each	DT
10_1101-2021_01_07_425794	168	25	sample	sample	NN
10_1101-2021_01_07_425794	168	26	has	have	VBZ
10_1101-2021_01_07_425794	168	27	four	four	CD
10_1101-2021_01_07_425794	168	28	replicates	replicate	NNS
10_1101-2021_01_07_425794	168	29	)	)	-RRB-
10_1101-2021_01_07_425794	168	30	in	in	IN
10_1101-2021_01_07_425794	168	31	the	the	DT
10_1101-2021_01_07_425794	168	32	analysis	analysis	NN
10_1101-2021_01_07_425794	168	33	of	of	IN
10_1101-2021_01_07_425794	168	34	the	the	DT
10_1101-2021_01_07_425794	168	35	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	168	36	dataset	dataset	NN
10_1101-2021_01_07_425794	168	37	.	.	.
10_1101-2021_01_07_425794	169	1	The	the	DT
10_1101-2021_01_07_425794	169	2	expression	expression	NN
10_1101-2021_01_07_425794	169	3	-	-	HYPH
10_1101-2021_01_07_425794	169	4	filtered	filter	VBN
10_1101-2021_01_07_425794	169	5	data	datum	NNS
10_1101-2021_01_07_425794	169	6	were	be	VBD
10_1101-2021_01_07_425794	169	7	also	also	RB
10_1101-2021_01_07_425794	169	8	used	use	VBN
10_1101-2021_01_07_425794	169	9	for	for	IN
10_1101-2021_01_07_425794	169	10	comparing	compare	VBG
10_1101-2021_01_07_425794	169	11	the	the	DT
10_1101-2021_01_07_425794	169	12	accuracy	accuracy	NN
10_1101-2021_01_07_425794	169	13	of	of	IN
10_1101-2021_01_07_425794	169	14	quantification	quantification	NN
10_1101-2021_01_07_425794	169	15	from	from	IN
10_1101-2021_01_07_425794	169	16	using	use	VBG
10_1101-2021_01_07_425794	169	17	alternative	alternative	JJ
10_1101-2021_01_07_425794	169	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	169	19	presented	present	VBN
10_1101-2021_01_07_425794	169	20	in	in	IN
10_1101-2021_01_07_425794	169	21	the	the	DT
10_1101-2021_01_07_425794	169	22	following	following	JJ
10_1101-2021_01_07_425794	169	23	sections	section	NNS
10_1101-2021_01_07_425794	169	24	.	.	.
10_1101-2021_01_07_425794	170	1	The	the	DT
10_1101-2021_01_07_425794	170	2	bar	bar	NN
10_1101-2021_01_07_425794	170	3	plot	plot	NN
10_1101-2021_01_07_425794	170	4	in	in	IN
10_1101-2021_01_07_425794	170	5	Figure	figure	NN
10_1101-2021_01_07_425794	170	6	4A	4a	NN
10_1101-2021_01_07_425794	170	7	shows	show	VBZ
10_1101-2021_01_07_425794	170	8	that	that	IN
10_1101-2021_01_07_425794	170	9	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	170	10	has	have	VBZ
10_1101-2021_01_07_425794	170	11	significantly	significantly	RB
10_1101-2021_01_07_425794	170	12	more	more	JJR
10_1101-2021_01_07_425794	170	13	genes	gene	NNS
10_1101-2021_01_07_425794	170	14	(	(	-LRB-
10_1101-2021_01_07_425794	170	15	also	also	RB
10_1101-2021_01_07_425794	170	16	higher	high	JJR
10_1101-2021_01_07_425794	170	17	proportion	proportion	NN
10_1101-2021_01_07_425794	170	18	of	of	IN
10_1101-2021_01_07_425794	170	19	genes	gene	NNS
10_1101-2021_01_07_425794	170	20	)	)	-RRB-
10_1101-2021_01_07_425794	170	21	filtered	filter	VBD
10_1101-2021_01_07_425794	170	22	out	out	RP
10_1101-2021_01_07_425794	170	23	due	due	IN
10_1101-2021_01_07_425794	170	24	to	to	IN
10_1101-2021_01_07_425794	170	25	low	low	JJ
10_1101-2021_01_07_425794	170	26	or	or	CC
10_1101-2021_01_07_425794	170	27	no	no	DT
10_1101-2021_01_07_425794	170	28	expression	expression	NN
10_1101-2021_01_07_425794	170	29	,	,	,
10_1101-2021_01_07_425794	170	30	compared	compare	VBN
10_1101-2021_01_07_425794	170	31	to	to	IN
10_1101-2021_01_07_425794	170	32	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	170	33	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	170	34	and	and	CC
10_1101-2021_01_07_425794	170	35	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	170	36	-	-	HYPH
10_1101-2021_01_07_425794	170	37	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	170	38	.	.	.
10_1101-2021_01_07_425794	171	1	After	after	IN
10_1101-2021_01_07_425794	171	2	expression	expression	NN
10_1101-2021_01_07_425794	171	3	filtering	filtering	NN
10_1101-2021_01_07_425794	171	4	,	,	,
10_1101-2021_01_07_425794	171	5	the	the	DT
10_1101-2021_01_07_425794	171	6	total	total	JJ
10_1101-2021_01_07_425794	171	7	numbers	number	NNS
10_1101-2021_01_07_425794	171	8	of	of	IN
10_1101-2021_01_07_425794	171	9	remaining	remain	VBG
10_1101-2021_01_07_425794	171	10	genes	gene	NNS
10_1101-2021_01_07_425794	171	11	from	from	IN
10_1101-2021_01_07_425794	171	12	the	the	DT
10_1101-2021_01_07_425794	171	13	three	three	CD
10_1101-2021_01_07_425794	171	14	annotations	annotation	NNS
10_1101-2021_01_07_425794	171	15	became	become	VBD
10_1101-2021_01_07_425794	171	16	more	more	RBR
10_1101-2021_01_07_425794	171	17	similar	similar	JJ
10_1101-2021_01_07_425794	171	18	to	to	IN
10_1101-2021_01_07_425794	171	19	each	each	DT
10_1101-2021_01_07_425794	171	20	other	other	JJ
10_1101-2021_01_07_425794	171	21	.	.	.
10_1101-2021_01_07_425794	172	1	16,472	16,472	CD
10_1101-2021_01_07_425794	172	2	genes	gene	NNS
10_1101-2021_01_07_425794	172	3	were	be	VBD
10_1101-2021_01_07_425794	172	4	found	find	VBN
10_1101-2021_01_07_425794	172	5	to	to	TO
10_1101-2021_01_07_425794	172	6	be	be	VB
10_1101-2021_01_07_425794	172	7	common	common	JJ
10_1101-2021_01_07_425794	172	8	between	between	IN
10_1101-2021_01_07_425794	172	9	the	the	DT
10_1101-2021_01_07_425794	172	10	three	three	CD
10_1101-2021_01_07_425794	172	11	annotations	annotation	NNS
10_1101-2021_01_07_425794	172	12	after	after	IN
10_1101-2021_01_07_425794	172	13	filtering	filter	VBG
10_1101-2021_01_07_425794	172	14	,	,	,
10_1101-2021_01_07_425794	172	15	accounting	account	VBG
10_1101-2021_01_07_425794	172	16	for	for	IN
10_1101-2021_01_07_425794	172	17	69	69	CD
10_1101-2021_01_07_425794	172	18	%	%	NN
10_1101-2021_01_07_425794	172	19	,	,	,
10_1101-2021_01_07_425794	172	20	78	78	CD
10_1101-2021_01_07_425794	172	21	%	%	NN
10_1101-2021_01_07_425794	172	22	and	and	CC
10_1101-2021_01_07_425794	172	23	86	86	CD
10_1101-2021_01_07_425794	172	24	%	%	NN
10_1101-2021_01_07_425794	172	25	of	of	IN
10_1101-2021_01_07_425794	172	26	the	the	DT
10_1101-2021_01_07_425794	172	27	filtered	filter	VBN
10_1101-2021_01_07_425794	172	28	genes	gene	NNS
10_1101-2021_01_07_425794	172	29	in	in	IN
10_1101-2021_01_07_425794	172	30	the	the	DT
10_1101-2021_01_07_425794	172	31	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	172	32	,	,	,
10_1101-2021_01_07_425794	172	33	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	172	34	-	-	HYPH
10_1101-2021_01_07_425794	172	35	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	172	36	and	and	CC
10_1101-2021_01_07_425794	172	37	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	172	38	-	-	HYPH
10_1101-2021_01_07_425794	172	39	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	172	40	an-	an-	CC
10_1101-2021_01_07_425794	172	41	notations	notation	NNS
10_1101-2021_01_07_425794	172	42	respectively	respectively	RB
10_1101-2021_01_07_425794	172	43	(	(	-LRB-
10_1101-2021_01_07_425794	172	44	Figure	figure	NN
10_1101-2021_01_07_425794	172	45	4B	4b	NN
10_1101-2021_01_07_425794	172	46	)	)	-RRB-
10_1101-2021_01_07_425794	172	47	.	.	.
10_1101-2021_01_07_425794	173	1	Almost	almost	RB
10_1101-2021_01_07_425794	173	2	all	all	PDT
10_1101-2021_01_07_425794	173	3	the	the	DT
10_1101-2021_01_07_425794	173	4	filtered	filter	VBN
10_1101-2021_01_07_425794	173	5	genes	gene	NNS
10_1101-2021_01_07_425794	173	6	in	in	IN
10_1101-2021_01_07_425794	173	7	the	the	DT
10_1101-2021_01_07_425794	173	8	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	173	9	-	-	HYPH
10_1101-2021_01_07_425794	173	10	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	173	11	annotation	annotation	NN
10_1101-2021_01_07_425794	173	12	can	can	MD
10_1101-2021_01_07_425794	173	13	be	be	VB
10_1101-2021_01_07_425794	173	14	found	find	VBN
10_1101-2021_01_07_425794	173	15	in	in	IN
10_1101-2021_01_07_425794	173	16	the	the	DT
10_1101-2021_01_07_425794	173	17	other	other	JJ
10_1101-2021_01_07_425794	173	18	two	two	CD
10_1101-2021_01_07_425794	173	19	annotations	annotation	NNS
10_1101-2021_01_07_425794	173	20	.	.	.
10_1101-2021_01_07_425794	174	1	After	after	IN
10_1101-2021_01_07_425794	174	2	expression	expression	NN
10_1101-2021_01_07_425794	174	3	filtering	filtering	NN
10_1101-2021_01_07_425794	174	4	,	,	,
10_1101-2021_01_07_425794	174	5	the	the	DT
10_1101-2021_01_07_425794	174	6	median	median	JJ
10_1101-2021_01_07_425794	174	7	effective	effective	JJ
10_1101-2021_01_07_425794	174	8	gene	gene	NN
10_1101-2021_01_07_425794	174	9	length	length	NN
10_1101-2021_01_07_425794	174	10	has	have	VBZ
10_1101-2021_01_07_425794	174	11	increased	increase	VBN
10_1101-2021_01_07_425794	174	12	to	to	IN
10_1101-2021_01_07_425794	174	13	∼4,000	∼4,000	CD
10_1101-2021_01_07_425794	174	14	bases	basis	NNS
10_1101-2021_01_07_425794	174	15	for	for	IN
10_1101-2021_01_07_425794	174	16	all	all	DT
10_1101-2021_01_07_425794	174	17	annotations	annotation	NNS
10_1101-2021_01_07_425794	174	18	(	(	-LRB-
10_1101-2021_01_07_425794	174	19	Figure	figure	NN
10_1101-2021_01_07_425794	174	20	4C	4c	NN
10_1101-2021_01_07_425794	174	21	)	)	-RRB-
10_1101-2021_01_07_425794	174	22	,	,	,
10_1101-2021_01_07_425794	174	23	meaning	mean	VBG
10_1101-2021_01_07_425794	174	24	that	that	IN
10_1101-2021_01_07_425794	174	25	a	a	DT
10_1101-2021_01_07_425794	174	26	higher	high	JJR
10_1101-2021_01_07_425794	174	27	proportion	proportion	NN
10_1101-2021_01_07_425794	174	28	of	of	IN
10_1101-2021_01_07_425794	174	29	short	short	JJ
10_1101-2021_01_07_425794	174	30	genes	gene	NNS
10_1101-2021_01_07_425794	174	31	were	be	VBD
10_1101-2021_01_07_425794	174	32	removed	remove	VBN
10_1101-2021_01_07_425794	174	33	due	due	IN
10_1101-2021_01_07_425794	174	34	to	to	IN
10_1101-2021_01_07_425794	174	35	low	low	JJ
10_1101-2021_01_07_425794	174	36	expression	expression	NN
10_1101-2021_01_07_425794	174	37	in	in	IN
10_1101-2021_01_07_425794	174	38	every	every	DT
10_1101-2021_01_07_425794	174	39	annotation	annotation	NN
10_1101-2021_01_07_425794	174	40	.	.	.
10_1101-2021_01_07_425794	175	1	The	the	DT
10_1101-2021_01_07_425794	175	2	median	median	JJ
10_1101-2021_01_07_425794	175	3	effective	effective	JJ
10_1101-2021_01_07_425794	175	4	length	length	NN
10_1101-2021_01_07_425794	175	5	of	of	IN
10_1101-2021_01_07_425794	175	6	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	175	7	genes	gene	NNS
10_1101-2021_01_07_425794	175	8	now	now	RB
10_1101-2021_01_07_425794	175	9	became	become	VBD
10_1101-2021_01_07_425794	175	10	comparable	comparable	JJ
10_1101-2021_01_07_425794	175	11	to	to	IN
10_1101-2021_01_07_425794	175	12	,	,	,
10_1101-2021_01_07_425794	175	13	or	or	CC
10_1101-2021_01_07_425794	175	14	slightly	slightly	RB
10_1101-2021_01_07_425794	175	15	higher	high	JJR
10_1101-2021_01_07_425794	175	16	than	than	IN
10_1101-2021_01_07_425794	175	17	those	those	DT
10_1101-2021_01_07_425794	175	18	in	in	IN
10_1101-2021_01_07_425794	175	19	the	the	DT
10_1101-2021_01_07_425794	175	20	two	two	CD
10_1101-2021_01_07_425794	175	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	175	22	annotations	annotation	NNS
10_1101-2021_01_07_425794	175	23	,	,	,
10_1101-2021_01_07_425794	175	24	indicating	indicate	VBG
10_1101-2021_01_07_425794	175	25	that	that	IN
10_1101-2021_01_07_425794	175	26	the	the	DT
10_1101-2021_01_07_425794	175	27	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	175	28	annotation	annotation	NN
10_1101-2021_01_07_425794	175	29	contained	contain	VBD
10_1101-2021_01_07_425794	175	30	a	a	DT
10_1101-2021_01_07_425794	175	31	higher	high	JJR
10_1101-2021_01_07_425794	175	32	proportion	proportion	NN
10_1101-2021_01_07_425794	175	33	of	of	IN
10_1101-2021_01_07_425794	175	34	lowly	lowly	JJ
10_1101-2021_01_07_425794	175	35	expressed	express	VBN
10_1101-2021_01_07_425794	175	36	short	short	JJ
10_1101-2021_01_07_425794	175	37	genes	gene	NNS
10_1101-2021_01_07_425794	175	38	than	than	IN
10_1101-2021_01_07_425794	175	39	the	the	DT
10_1101-2021_01_07_425794	175	40	two	two	CD
10_1101-2021_01_07_425794	175	41	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	175	42	annotations	annotation	NNS
10_1101-2021_01_07_425794	175	43	.	.	.
10_1101-2021_01_07_425794	176	1	When	when	WRB
10_1101-2021_01_07_425794	176	2	comparing	compare	VBG
10_1101-2021_01_07_425794	176	3	the	the	DT
10_1101-2021_01_07_425794	176	4	effective	effective	JJ
10_1101-2021_01_07_425794	176	5	lengths	length	NNS
10_1101-2021_01_07_425794	176	6	of	of	IN
10_1101-2021_01_07_425794	176	7	genes	gene	NNS
10_1101-2021_01_07_425794	176	8	common	common	JJ
10_1101-2021_01_07_425794	176	9	to	to	IN
10_1101-2021_01_07_425794	176	10	all	all	DT
10_1101-2021_01_07_425794	176	11	three	three	CD
10_1101-2021_01_07_425794	176	12	annotations	annotation	NNS
10_1101-2021_01_07_425794	176	13	after	after	IN
10_1101-2021_01_07_425794	176	14	filtering	filter	VBG
10_1101-2021_01_07_425794	176	15	,	,	,
10_1101-2021_01_07_425794	176	16	the	the	DT
10_1101-2021_01_07_425794	176	17	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	176	18	genes	gene	NNS
10_1101-2021_01_07_425794	176	19	were	be	VBD
10_1101-2021_01_07_425794	176	20	found	find	VBN
10_1101-2021_01_07_425794	176	21	to	to	TO
10_1101-2021_01_07_425794	176	22	have	have	VB
10_1101-2021_01_07_425794	176	23	the	the	DT
10_1101-2021_01_07_425794	176	24	largest	large	JJS
10_1101-2021_01_07_425794	176	25	median	median	JJ
10_1101-2021_01_07_425794	176	26	effective	effective	JJ
10_1101-2021_01_07_425794	176	27	length	length	NN
10_1101-2021_01_07_425794	176	28	and	and	CC
10_1101-2021_01_07_425794	176	29	the	the	DT
10_1101-2021_01_07_425794	176	30	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	176	31	-	-	HYPH
10_1101-2021_01_07_425794	176	32	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	176	33	genes	gene	NNS
10_1101-2021_01_07_425794	176	34	have	have	VBP
10_1101-2021_01_07_425794	176	35	the	the	DT
10_1101-2021_01_07_425794	176	36	smallest	small	JJS
10_1101-2021_01_07_425794	176	37	median	median	JJ
10_1101-2021_01_07_425794	176	38	effective	effective	JJ
10_1101-2021_01_07_425794	176	39	length	length	NN
10_1101-2021_01_07_425794	176	40	(	(	-LRB-
10_1101-2021_01_07_425794	176	41	Figure	Figure	NNP
10_1101-2021_01_07_425794	176	42	4D	4d	NN
10_1101-2021_01_07_425794	176	43	)	)	-RRB-
10_1101-2021_01_07_425794	176	44	.	.	.
10_1101-2021_01_07_425794	177	1	This	this	DT
10_1101-2021_01_07_425794	177	2	is	be	VBZ
10_1101-2021_01_07_425794	177	3	not	not	RB
10_1101-2021_01_07_425794	177	4	surprising	surprising	JJ
10_1101-2021_01_07_425794	177	5	because	because	IN
10_1101-2021_01_07_425794	177	6	the	the	DT
10_1101-2021_01_07_425794	177	7	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	177	8	annotation	annotation	NN
10_1101-2021_01_07_425794	177	9	is	be	VBZ
10_1101-2021_01_07_425794	177	10	known	know	VBN
10_1101-2021_01_07_425794	177	11	to	to	TO
10_1101-2021_01_07_425794	177	12	be	be	VB
10_1101-2021_01_07_425794	177	13	more	more	RBR
10_1101-2021_01_07_425794	177	14	aggressive	aggressive	JJ
10_1101-2021_01_07_425794	177	15	than	than	IN
10_1101-2021_01_07_425794	177	16	the	the	DT
10_1101-2021_01_07_425794	177	17	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	177	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	177	19	and	and	CC
10_1101-2021_01_07_425794	177	20	the	the	DT
10_1101-2021_01_07_425794	177	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	177	22	-	-	HYPH
10_1101-2021_01_07_425794	177	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	177	24	annotation	annotation	NN
10_1101-2021_01_07_425794	177	25	is	be	VBZ
10_1101-2021_01_07_425794	177	26	an	an	DT
10_1101-2021_01_07_425794	177	27	old	old	JJ
10_1101-2021_01_07_425794	177	28	annotation	annotation	NN
10_1101-2021_01_07_425794	177	29	that	that	WDT
10_1101-2021_01_07_425794	177	30	has	have	VBZ
10_1101-2021_01_07_425794	177	31	not	not	RB
10_1101-2021_01_07_425794	177	32	been	be	VBN
10_1101-2021_01_07_425794	177	33	updated	update	VBN
10_1101-2021_01_07_425794	177	34	in	in	IN
10_1101-2021_01_07_425794	177	35	the	the	DT
10_1101-2021_01_07_425794	177	36	last	last	JJ
10_1101-2021_01_07_425794	177	37	five	five	CD
10_1101-2021_01_07_425794	177	38	year	year	NN
10_1101-2021_01_07_425794	177	39	.	.	.
10_1101-2021_01_07_425794	178	1	The	the	DT
10_1101-2021_01_07_425794	178	2	expression	expression	NN
10_1101-2021_01_07_425794	178	3	filtering	filtering	NN
10_1101-2021_01_07_425794	178	4	did	do	VBD
10_1101-2021_01_07_425794	178	5	not	not	RB
10_1101-2021_01_07_425794	178	6	seem	seem	VB
10_1101-2021_01_07_425794	178	7	to	to	TO
10_1101-2021_01_07_425794	178	8	affect	affect	VB
10_1101-2021_01_07_425794	178	9	the	the	DT
10_1101-2021_01_07_425794	178	10	distribution	distribution	NN
10_1101-2021_01_07_425794	178	11	of	of	IN
10_1101-2021_01_07_425794	178	12	differences	difference	NNS
10_1101-2021_01_07_425794	178	13	of	of	IN
10_1101-2021_01_07_425794	178	14	effective	effective	JJ
10_1101-2021_01_07_425794	178	15	gene	gene	NN
10_1101-2021_01_07_425794	178	16	lengths	length	NNS
10_1101-2021_01_07_425794	178	17	between	between	IN
10_1101-2021_01_07_425794	178	18	each	each	DT
10_1101-2021_01_07_425794	178	19	pair	pair	NN
10_1101-2021_01_07_425794	178	20	of	of	IN
10_1101-2021_01_07_425794	178	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	178	22	(	(	-LRB-
10_1101-2021_01_07_425794	178	23	using	use	VBG
10_1101-2021_01_07_425794	178	24	genes	gene	NNS
10_1101-2021_01_07_425794	178	25	common	common	JJ
10_1101-2021_01_07_425794	178	26	to	to	IN
10_1101-2021_01_07_425794	178	27	each	each	DT
10_1101-2021_01_07_425794	178	28	pair	pair	NN
10_1101-2021_01_07_425794	178	29	of	of	IN
10_1101-2021_01_07_425794	178	30	annotations	annotation	NNS
10_1101-2021_01_07_425794	178	31	)	)	-RRB-
10_1101-2021_01_07_425794	178	32	,	,	,
10_1101-2021_01_07_425794	178	33	with	with	IN
10_1101-2021_01_07_425794	178	34	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	178	35	and	and	CC
10_1101-2021_01_07_425794	178	36	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	178	37	-	-	HYPH
10_1101-2021_01_07_425794	178	38	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	178	39	remaining	remain	VBG
10_1101-2021_01_07_425794	178	40	to	to	TO
10_1101-2021_01_07_425794	178	41	be	be	VB
10_1101-2021_01_07_425794	178	42	the	the	DT
10_1101-2021_01_07_425794	178	43	least	least	JJS
10_1101-2021_01_07_425794	178	44	concordant	concordant	NN
10_1101-2021_01_07_425794	178	45	annotations	annotation	NNS
10_1101-2021_01_07_425794	178	46	(	(	-LRB-
10_1101-2021_01_07_425794	178	47	Figure	figure	NN
10_1101-2021_01_07_425794	178	48	4E	4e	NN
10_1101-2021_01_07_425794	178	49	and	and	CC
10_1101-2021_01_07_425794	178	50	Figure	figure	NN
10_1101-2021_01_07_425794	178	51	1C	1c	NN
10_1101-2021_01_07_425794	178	52	)	)	-RRB-
10_1101-2021_01_07_425794	178	53	.	.	.
10_1101-2021_01_07_425794	179	1	Using	use	VBG
10_1101-2021_01_07_425794	179	2	genes	gene	NNS
10_1101-2021_01_07_425794	179	3	common	common	JJ
10_1101-2021_01_07_425794	179	4	to	to	IN
10_1101-2021_01_07_425794	179	5	all	all	DT
10_1101-2021_01_07_425794	179	6	three	three	CD
10_1101-2021_01_07_425794	179	7	annotations	annotation	NNS
10_1101-2021_01_07_425794	179	8	after	after	IN
10_1101-2021_01_07_425794	179	9	filtering	filter	VBG
10_1101-2021_01_07_425794	179	10	exhibited	exhibit	VBD
10_1101-2021_01_07_425794	179	11	similar	similar	JJ
10_1101-2021_01_07_425794	179	12	distributions	distribution	NNS
10_1101-2021_01_07_425794	179	13	of	of	IN
10_1101-2021_01_07_425794	179	14	gene	gene	NN
10_1101-2021_01_07_425794	179	15	length	length	NN
10_1101-2021_01_07_425794	179	16	differences	difference	NNS
10_1101-2021_01_07_425794	179	17	between	between	IN
10_1101-2021_01_07_425794	179	18	each	each	DT
10_1101-2021_01_07_425794	179	19	pair	pair	NN
10_1101-2021_01_07_425794	179	20	of	of	IN
10_1101-2021_01_07_425794	179	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	179	22	compared	compare	VBN
10_1101-2021_01_07_425794	179	23	to	to	IN
10_1101-2021_01_07_425794	179	24	using	use	VBG
10_1101-2021_01_07_425794	179	25	genes	gene	NNS
10_1101-2021_01_07_425794	179	26	common	common	JJ
10_1101-2021_01_07_425794	179	27	to	to	IN
10_1101-2021_01_07_425794	179	28	each	each	DT
10_1101-2021_01_07_425794	179	29	pair	pair	NN
10_1101-2021_01_07_425794	179	30	of	of	IN
10_1101-2021_01_07_425794	179	31	annotations	annotation	NNS
10_1101-2021_01_07_425794	179	32	(	(	-LRB-
10_1101-2021_01_07_425794	179	33	Figure	Figure	NNP
10_1101-2021_01_07_425794	179	34	4F	4f	NN
10_1101-2021_01_07_425794	179	35	)	)	-RRB-
10_1101-2021_01_07_425794	179	36	.	.	.
10_1101-2021_01_07_425794	180	1	Similar	similar	JJ
10_1101-2021_01_07_425794	180	2	to	to	IN
10_1101-2021_01_07_425794	180	3	before	before	IN
10_1101-2021_01_07_425794	180	4	filtering	filtering	NN
10_1101-2021_01_07_425794	180	5	,	,	,
10_1101-2021_01_07_425794	180	6	the	the	DT
10_1101-2021_01_07_425794	180	7	gene	gene	NN
10_1101-2021_01_07_425794	180	8	-	-	HYPH
10_1101-2021_01_07_425794	180	9	wise	wise	JJ
10_1101-2021_01_07_425794	180	10	length	length	NN
10_1101-2021_01_07_425794	180	11	comparison	comparison	NN
10_1101-2021_01_07_425794	180	12	performed	perform	VBN
10_1101-2021_01_07_425794	180	13	after	after	IN
10_1101-2021_01_07_425794	180	14	filtering	filter	VBG
10_1101-2021_01_07_425794	180	15	also	also	RB
10_1101-2021_01_07_425794	180	16	showed	show	VBD
10_1101-2021_01_07_425794	180	17	that	that	IN
10_1101-2021_01_07_425794	180	18	overall	overall	RB
10_1101-2021_01_07_425794	180	19	the	the	DT
10_1101-2021_01_07_425794	180	20	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	180	21	genes	gene	NNS
10_1101-2021_01_07_425794	180	22	had	have	VBD
10_1101-2021_01_07_425794	180	23	the	the	DT
10_1101-2021_01_07_425794	180	24	largest	large	JJS
10_1101-2021_01_07_425794	180	25	gene	gene	NN
10_1101-2021_01_07_425794	180	26	lengths	length	NNS
10_1101-2021_01_07_425794	180	27	and	and	CC
10_1101-2021_01_07_425794	180	28	the	the	DT
10_1101-2021_01_07_425794	180	29	RefSeq-	refseq-	JJ
10_1101-2021_01_07_425794	180	30	12	12	CD
10_1101-2021_01_07_425794	180	31	.CC	.CC	,
10_1101-2021_01_07_425794	180	32	-	-	HYPH
10_1101-2021_01_07_425794	180	33	BY	by	IN
10_1101-2021_01_07_425794	180	34	-	-	HYPH
10_1101-2021_01_07_425794	180	35	NC	NC	NNP
10_1101-2021_01_07_425794	180	36	-	-	HYPH
10_1101-2021_01_07_425794	180	37	ND	ND	NNP
10_1101-2021_01_07_425794	180	38	4.0	4.0	CD
10_1101-2021_01_07_425794	180	39	International	international	JJ
10_1101-2021_01_07_425794	180	40	licensemade	licensemade	NN
10_1101-2021_01_07_425794	180	41	available	available	JJ
10_1101-2021_01_07_425794	180	42	under	under	IN
10_1101-2021_01_07_425794	180	43	a	a	DT
10_1101-2021_01_07_425794	180	44	(	(	-LRB-
10_1101-2021_01_07_425794	180	45	which	which	WDT
10_1101-2021_01_07_425794	180	46	was	be	VBD
10_1101-2021_01_07_425794	180	47	not	not	RB
10_1101-2021_01_07_425794	180	48	certified	certify	VBN
10_1101-2021_01_07_425794	180	49	by	by	IN
10_1101-2021_01_07_425794	180	50	peer	peer	NN
10_1101-2021_01_07_425794	180	51	review	review	NN
10_1101-2021_01_07_425794	180	52	)	)	-RRB-
10_1101-2021_01_07_425794	180	53	is	be	VBZ
10_1101-2021_01_07_425794	180	54	the	the	DT
10_1101-2021_01_07_425794	180	55	author	author	NN
10_1101-2021_01_07_425794	180	56	/	/	SYM
10_1101-2021_01_07_425794	180	57	funder	funder	NN
10_1101-2021_01_07_425794	180	58	,	,	,
10_1101-2021_01_07_425794	180	59	who	who	WP
10_1101-2021_01_07_425794	180	60	has	have	VBZ
10_1101-2021_01_07_425794	180	61	granted	grant	VBN
10_1101-2021_01_07_425794	180	62	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	180	63	a	a	DT
10_1101-2021_01_07_425794	180	64	license	license	NN
10_1101-2021_01_07_425794	180	65	to	to	TO
10_1101-2021_01_07_425794	180	66	display	display	VB
10_1101-2021_01_07_425794	180	67	the	the	DT
10_1101-2021_01_07_425794	180	68	preprint	preprint	NN
10_1101-2021_01_07_425794	180	69	in	in	IN
10_1101-2021_01_07_425794	180	70	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	180	71	.	.	.
10_1101-2021_01_07_425794	181	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	181	2	is	be	VBZ
10_1101-2021_01_07_425794	181	3	The	the	DT
10_1101-2021_01_07_425794	181	4	copyright	copyright	NN
10_1101-2021_01_07_425794	181	5	holder	holder	NN
10_1101-2021_01_07_425794	181	6	for	for	IN
10_1101-2021_01_07_425794	181	7	this	this	DT
10_1101-2021_01_07_425794	181	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	181	9	version	version	NN
10_1101-2021_01_07_425794	181	10	posted	post	VBD
10_1101-2021_01_07_425794	181	11	January	January	NNP
10_1101-2021_01_07_425794	181	12	8	8	CD
10_1101-2021_01_07_425794	181	13	,	,	,
10_1101-2021_01_07_425794	181	14	2021	2021	CD
10_1101-2021_01_07_425794	181	15	.	.	.
10_1101-2021_01_07_425794	181	16	;	;	:
10_1101-2021_01_07_425794	181	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	181	18	:	:	:
10_1101-2021_01_07_425794	181	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	181	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	181	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	181	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	CD
10_1101-2021_01_07_425794	181	23	1,996	1,996	CD
10_1101-2021_01_07_425794	181	24	376	376	CD
10_1101-2021_01_07_425794	181	25	2,141	2,141	CD
10_1101-2021_01_07_425794	181	26	6,837	6,837	CD
10_1101-2021_01_07_425794	181	27	489	489	CD
10_1101-2021_01_07_425794	181	28	71	71	CD
10_1101-2021_01_07_425794	181	29	16,472	16,472	CD
10_1101-2021_01_07_425794	181	30	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	181	31	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	181	32	-	-	HYPH
10_1101-2021_01_07_425794	181	33	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	181	34	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	181	35	-	-	HYPH
10_1101-2021_01_07_425794	181	36	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	181	37	B	B	NNP
10_1101-2021_01_07_425794	181	38	D	D	NNP
10_1101-2021_01_07_425794	181	39	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	181	40	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	181	41	-	-	HYPH
10_1101-2021_01_07_425794	181	42	RsubreadRefSeq	RsubreadRefSeq	NNP
10_1101-2021_01_07_425794	181	43	-	-	HYPH
10_1101-2021_01_07_425794	181	44	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	181	45	Before	before	IN
10_1101-2021_01_07_425794	181	46	After	after	IN
10_1101-2021_01_07_425794	181	47	G	G	NNP
10_1101-2021_01_07_425794	181	48	en	en	NNP
10_1101-2021_01_07_425794	181	49	e	e	NNP
10_1101-2021_01_07_425794	181	50	co	co	NN
10_1101-2021_01_07_425794	181	51	un	un	NNP
10_1101-2021_01_07_425794	181	52	t	t	NNP
10_1101-2021_01_07_425794	181	53	(	(	-LRB-
10_1101-2021_01_07_425794	181	54	x1	x1	NNP
10_1101-2021_01_07_425794	181	55	00	00	CD
10_1101-2021_01_07_425794	181	56	0	0	CD
10_1101-2021_01_07_425794	181	57	)	)	-RRB-
10_1101-2021_01_07_425794	181	58	10	10	CD
10_1101-2021_01_07_425794	181	59	30	30	CD
10_1101-2021_01_07_425794	181	60	50	50	CD
10_1101-2021_01_07_425794	181	61	60,683	60,683	CD
10_1101-2021_01_07_425794	181	62	23,869	23,869	CD
10_1101-2021_01_07_425794	181	63	28,395	28,395	CD
10_1101-2021_01_07_425794	181	64	19,060	19,060	CD
10_1101-2021_01_07_425794	181	65	39,535	39,535	CD
10_1101-2021_01_07_425794	181	66	21,098	21,098	CD
10_1101-2021_01_07_425794	181	67	A	a	NN
10_1101-2021_01_07_425794	181	68	E	e	NN
10_1101-2021_01_07_425794	181	69	ns	ns	IN
10_1101-2021_01_07_425794	181	70	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	71	bl	bl	NNP
10_1101-2021_01_07_425794	181	72	R	R	NNP
10_1101-2021_01_07_425794	181	73	ef	ef	NNP
10_1101-2021_01_07_425794	181	74	S	S	NNP
10_1101-2021_01_07_425794	181	75	eq	eq	NNP
10_1101-2021_01_07_425794	181	76	-N	-n	NN
10_1101-2021_01_07_425794	181	77	C	C	NNP
10_1101-2021_01_07_425794	181	78	B	B	NNP
10_1101-2021_01_07_425794	181	79	I	I	NNP
10_1101-2021_01_07_425794	181	80	R	r	NN
10_1101-2021_01_07_425794	181	81	ef	ef	NNP
10_1101-2021_01_07_425794	181	82	S	S	NNP
10_1101-2021_01_07_425794	181	83	eq	eq	NNP
10_1101-2021_01_07_425794	181	84	-R	-R	NNP
10_1101-2021_01_07_425794	181	85	su	su	NNP
10_1101-2021_01_07_425794	181	86	br	br	VBP
10_1101-2021_01_07_425794	181	87	ea	ea	NNP
10_1101-2021_01_07_425794	181	88	d	d	NNP
10_1101-2021_01_07_425794	181	89	Lo	Lo	NNP
10_1101-2021_01_07_425794	181	90	g2	g2	NNP
10_1101-2021_01_07_425794	181	91	ef	ef	NNP
10_1101-2021_01_07_425794	181	92	fe	fe	NNP
10_1101-2021_01_07_425794	181	93	ct	ct	NNP
10_1101-2021_01_07_425794	181	94	iv	iv	NNP
10_1101-2021_01_07_425794	181	95	e	e	NNP
10_1101-2021_01_07_425794	181	96	ge	ge	NNP
10_1101-2021_01_07_425794	181	97	ne	ne	NNP
10_1101-2021_01_07_425794	181	98	le	le	NNP
10_1101-2021_01_07_425794	181	99	ng	ng	PRP
10_1101-2021_01_07_425794	181	100	th	th	XX
10_1101-2021_01_07_425794	181	101	D	d	NN
10_1101-2021_01_07_425794	181	102	iff	iff	NN
10_1101-2021_01_07_425794	181	103	er	er	UH
10_1101-2021_01_07_425794	181	104	en	en	FW
10_1101-2021_01_07_425794	181	105	ce	ce	NNP
10_1101-2021_01_07_425794	181	106	in	in	IN
10_1101-2021_01_07_425794	181	107	lo	lo	NNP
10_1101-2021_01_07_425794	181	108	g2	g2	NNP
10_1101-2021_01_07_425794	181	109	ef	ef	NNP
10_1101-2021_01_07_425794	181	110	fe	fe	NNP
10_1101-2021_01_07_425794	181	111	ct	ct	NNP
10_1101-2021_01_07_425794	181	112	iv	iv	NNP
10_1101-2021_01_07_425794	181	113	e	e	NNP
10_1101-2021_01_07_425794	181	114	ge	ge	NNP
10_1101-2021_01_07_425794	181	115	ne	ne	NNP
10_1101-2021_01_07_425794	181	116	le	le	NNP
10_1101-2021_01_07_425794	181	117	ng	ng	NNP
10_1101-2021_01_07_425794	181	118	th	th	XX
10_1101-2021_01_07_425794	181	119	F	F	NNP
10_1101-2021_01_07_425794	181	120	R	R	NNP
10_1101-2021_01_07_425794	181	121	ef	ef	NNP
10_1101-2021_01_07_425794	181	122	S	S	NNP
10_1101-2021_01_07_425794	181	123	eq	eq	NN
10_1101-2021_01_07_425794	181	124	−N	−N	NNP
10_1101-2021_01_07_425794	181	125	C	C	NNP
10_1101-2021_01_07_425794	181	126	B	B	NNP
10_1101-2021_01_07_425794	181	127	I	I	NNP
10_1101-2021_01_07_425794	181	128	vs	vs	IN
10_1101-2021_01_07_425794	181	129	R	r	NN
10_1101-2021_01_07_425794	181	130	ef	ef	NNP
10_1101-2021_01_07_425794	181	131	S	S	NNP
10_1101-2021_01_07_425794	181	132	eq	eq	NNP
10_1101-2021_01_07_425794	181	133	−R	−R	NNP
10_1101-2021_01_07_425794	181	134	su	su	NNP
10_1101-2021_01_07_425794	181	135	br	br	VBP
10_1101-2021_01_07_425794	181	136	ea	ea	NN
10_1101-2021_01_07_425794	181	137	d	d	NN
10_1101-2021_01_07_425794	181	138	E	e	NN
10_1101-2021_01_07_425794	181	139	ns	ns	IN
10_1101-2021_01_07_425794	181	140	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	141	bl	bl	PRP
10_1101-2021_01_07_425794	181	142	vs	vs	IN
10_1101-2021_01_07_425794	181	143	R	R	NNP
10_1101-2021_01_07_425794	181	144	ef	ef	NNP
10_1101-2021_01_07_425794	181	145	S	S	NNP
10_1101-2021_01_07_425794	181	146	eq	eq	NNP
10_1101-2021_01_07_425794	181	147	−R	−R	NNP
10_1101-2021_01_07_425794	181	148	su	su	NNP
10_1101-2021_01_07_425794	181	149	br	br	VBP
10_1101-2021_01_07_425794	181	150	ea	ea	NN
10_1101-2021_01_07_425794	181	151	d	d	NN
10_1101-2021_01_07_425794	181	152	E	e	NN
10_1101-2021_01_07_425794	181	153	ns	ns	IN
10_1101-2021_01_07_425794	181	154	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	155	bl	bl	PRP
10_1101-2021_01_07_425794	181	156	vs	vs	IN
10_1101-2021_01_07_425794	181	157	R	R	NNP
10_1101-2021_01_07_425794	181	158	ef	ef	NNP
10_1101-2021_01_07_425794	181	159	S	S	NNP
10_1101-2021_01_07_425794	181	160	eq	eq	NNP
10_1101-2021_01_07_425794	181	161	-N	-n	NN
10_1101-2021_01_07_425794	181	162	C	C	NNP
10_1101-2021_01_07_425794	181	163	B	B	NNP
10_1101-2021_01_07_425794	181	164	I	i	NN
10_1101-2021_01_07_425794	181	165	E	e	NN
10_1101-2021_01_07_425794	181	166	ns	ns	IN
10_1101-2021_01_07_425794	181	167	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	168	bl	bl	NNP
10_1101-2021_01_07_425794	181	169	R	R	NNP
10_1101-2021_01_07_425794	181	170	ef	ef	NNP
10_1101-2021_01_07_425794	181	171	S	S	NNP
10_1101-2021_01_07_425794	181	172	eq	eq	NNP
10_1101-2021_01_07_425794	181	173	-N	-n	NN
10_1101-2021_01_07_425794	181	174	C	C	NNP
10_1101-2021_01_07_425794	181	175	B	B	NNP
10_1101-2021_01_07_425794	181	176	I	I	NNP
10_1101-2021_01_07_425794	181	177	R	r	NN
10_1101-2021_01_07_425794	181	178	ef	ef	NNP
10_1101-2021_01_07_425794	181	179	S	S	NNP
10_1101-2021_01_07_425794	181	180	eq	eq	NNP
10_1101-2021_01_07_425794	181	181	-R	-R	NNP
10_1101-2021_01_07_425794	181	182	su	su	NNP
10_1101-2021_01_07_425794	181	183	br	br	VBP
10_1101-2021_01_07_425794	181	184	ea	ea	NNP
10_1101-2021_01_07_425794	181	185	d	d	NN
10_1101-2021_01_07_425794	181	186	R	r	NN
10_1101-2021_01_07_425794	181	187	ef	ef	NN
10_1101-2021_01_07_425794	181	188	S	S	NNP
10_1101-2021_01_07_425794	181	189	eq	eq	NN
10_1101-2021_01_07_425794	181	190	−N	−N	NNP
10_1101-2021_01_07_425794	181	191	C	C	NNP
10_1101-2021_01_07_425794	181	192	B	B	NNP
10_1101-2021_01_07_425794	181	193	I	I	NNP
10_1101-2021_01_07_425794	181	194	vs	vs	IN
10_1101-2021_01_07_425794	181	195	R	r	NN
10_1101-2021_01_07_425794	181	196	ef	ef	NNP
10_1101-2021_01_07_425794	181	197	S	S	NNP
10_1101-2021_01_07_425794	181	198	eq	eq	NNP
10_1101-2021_01_07_425794	181	199	−R	−R	NNP
10_1101-2021_01_07_425794	181	200	su	su	NNP
10_1101-2021_01_07_425794	181	201	br	br	VBP
10_1101-2021_01_07_425794	181	202	ea	ea	NN
10_1101-2021_01_07_425794	181	203	d	d	NN
10_1101-2021_01_07_425794	181	204	E	e	NN
10_1101-2021_01_07_425794	181	205	ns	ns	IN
10_1101-2021_01_07_425794	181	206	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	207	bl	bl	PRP
10_1101-2021_01_07_425794	181	208	vs	vs	IN
10_1101-2021_01_07_425794	181	209	R	R	NNP
10_1101-2021_01_07_425794	181	210	ef	ef	NNP
10_1101-2021_01_07_425794	181	211	S	S	NNP
10_1101-2021_01_07_425794	181	212	eq	eq	NNP
10_1101-2021_01_07_425794	181	213	−R	−R	NNP
10_1101-2021_01_07_425794	181	214	su	su	NNP
10_1101-2021_01_07_425794	181	215	br	br	VBP
10_1101-2021_01_07_425794	181	216	ea	ea	NN
10_1101-2021_01_07_425794	181	217	d	d	NN
10_1101-2021_01_07_425794	181	218	E	e	NN
10_1101-2021_01_07_425794	181	219	ns	ns	IN
10_1101-2021_01_07_425794	181	220	em	-PRON-	PRP
10_1101-2021_01_07_425794	181	221	bl	bl	PRP
10_1101-2021_01_07_425794	181	222	vs	vs	IN
10_1101-2021_01_07_425794	181	223	R	R	NNP
10_1101-2021_01_07_425794	181	224	ef	ef	NNP
10_1101-2021_01_07_425794	181	225	S	S	NNP
10_1101-2021_01_07_425794	181	226	eq	eq	NNP
10_1101-2021_01_07_425794	181	227	-N	-n	NN
10_1101-2021_01_07_425794	181	228	C	C	NNP
10_1101-2021_01_07_425794	181	229	B	B	NNP
10_1101-2021_01_07_425794	181	230	I	i	NN
10_1101-2021_01_07_425794	181	231	C	c	NN
10_1101-2021_01_07_425794	181	232	E	e	NN
10_1101-2021_01_07_425794	181	233	D	d	NN
10_1101-2021_01_07_425794	181	234	iff	iff	NN
10_1101-2021_01_07_425794	181	235	er	er	UH
10_1101-2021_01_07_425794	181	236	en	en	FW
10_1101-2021_01_07_425794	181	237	ce	ce	NNP
10_1101-2021_01_07_425794	181	238	in	in	IN
10_1101-2021_01_07_425794	181	239	lo	lo	NNP
10_1101-2021_01_07_425794	181	240	g2	g2	NNP
10_1101-2021_01_07_425794	181	241	ef	ef	NNP
10_1101-2021_01_07_425794	181	242	fe	fe	NNP
10_1101-2021_01_07_425794	181	243	ct	ct	NNP
10_1101-2021_01_07_425794	181	244	iv	iv	NNP
10_1101-2021_01_07_425794	181	245	e	e	NNP
10_1101-2021_01_07_425794	181	246	ge	ge	NNP
10_1101-2021_01_07_425794	181	247	ne	ne	NNP
10_1101-2021_01_07_425794	181	248	le	le	NNP
10_1101-2021_01_07_425794	181	249	ng	ng	PRP
10_1101-2021_01_07_425794	181	250	th	th	XX
10_1101-2021_01_07_425794	181	251	Lo	Lo	NNP
10_1101-2021_01_07_425794	181	252	g2	g2	NNP
10_1101-2021_01_07_425794	181	253	ef	ef	FW
10_1101-2021_01_07_425794	181	254	fe	fe	NNP
10_1101-2021_01_07_425794	181	255	ct	ct	NNP
10_1101-2021_01_07_425794	181	256	iv	iv	NNP
10_1101-2021_01_07_425794	181	257	e	e	NNP
10_1101-2021_01_07_425794	181	258	ge	ge	NNP
10_1101-2021_01_07_425794	181	259	ne	ne	NNP
10_1101-2021_01_07_425794	181	260	le	le	NNP
10_1101-2021_01_07_425794	181	261	ng	ng	NNP
10_1101-2021_01_07_425794	181	262	th	th	XX
10_1101-2021_01_07_425794	181	263	0	0	CD
10_1101-2021_01_07_425794	181	264	20	20	CD
10_1101-2021_01_07_425794	181	265	40	40	CD
10_1101-2021_01_07_425794	181	266	60	60	CD
10_1101-2021_01_07_425794	181	267	3	3	CD
10_1101-2021_01_07_425794	181	268	6	6	CD
10_1101-2021_01_07_425794	181	269	9	9	CD
10_1101-2021_01_07_425794	181	270	12	12	CD
10_1101-2021_01_07_425794	181	271	15	15	CD
10_1101-2021_01_07_425794	181	272	18	18	CD
10_1101-2021_01_07_425794	181	273	3	3	CD
10_1101-2021_01_07_425794	181	274	6	6	CD
10_1101-2021_01_07_425794	181	275	9	9	CD
10_1101-2021_01_07_425794	181	276	12	12	CD
10_1101-2021_01_07_425794	181	277	15	15	CD
10_1101-2021_01_07_425794	181	278	18	18	CD
10_1101-2021_01_07_425794	181	279	−4	−4	CD
10_1101-2021_01_07_425794	181	280	−2	−2	NNP
10_1101-2021_01_07_425794	181	281	0	0	CD
10_1101-2021_01_07_425794	181	282	2	2	CD
10_1101-2021_01_07_425794	181	283	4	4	CD
10_1101-2021_01_07_425794	181	284	6	6	CD
10_1101-2021_01_07_425794	181	285	−4	−4	CD
10_1101-2021_01_07_425794	181	286	−2	−2	NNP
10_1101-2021_01_07_425794	181	287	0	0	CD
10_1101-2021_01_07_425794	181	288	2	2	CD
10_1101-2021_01_07_425794	181	289	4	4	CD
10_1101-2021_01_07_425794	181	290	6	6	CD
10_1101-2021_01_07_425794	181	291	Figure	figure	NN
10_1101-2021_01_07_425794	181	292	4	4	CD
10_1101-2021_01_07_425794	181	293	:	:	:
10_1101-2021_01_07_425794	181	294	Concordance	concordance	NN
10_1101-2021_01_07_425794	181	295	and	and	CC
10_1101-2021_01_07_425794	181	296	differences	difference	NNS
10_1101-2021_01_07_425794	181	297	between	between	IN
10_1101-2021_01_07_425794	181	298	gene	gene	NN
10_1101-2021_01_07_425794	181	299	annotations	annotation	NNS
10_1101-2021_01_07_425794	181	300	after	after	IN
10_1101-2021_01_07_425794	181	301	filtering	filter	VBG
10_1101-2021_01_07_425794	181	302	for	for	IN
10_1101-2021_01_07_425794	181	303	lowly	lowly	JJ
10_1101-2021_01_07_425794	181	304	expressed	express	VBN
10_1101-2021_01_07_425794	181	305	genes	gene	NNS
10_1101-2021_01_07_425794	181	306	.	.	.
10_1101-2021_01_07_425794	182	1	(	(	-LRB-
10_1101-2021_01_07_425794	182	2	A	a	NN
10_1101-2021_01_07_425794	182	3	)	)	-RRB-
10_1101-2021_01_07_425794	182	4	Bar	bar	NN
10_1101-2021_01_07_425794	182	5	plot	plot	NN
10_1101-2021_01_07_425794	182	6	showing	show	VBG
10_1101-2021_01_07_425794	182	7	the	the	DT
10_1101-2021_01_07_425794	182	8	differences	difference	NNS
10_1101-2021_01_07_425794	182	9	in	in	IN
10_1101-2021_01_07_425794	182	10	the	the	DT
10_1101-2021_01_07_425794	182	11	number	number	NN
10_1101-2021_01_07_425794	182	12	of	of	IN
10_1101-2021_01_07_425794	182	13	genes	gene	NNS
10_1101-2021_01_07_425794	182	14	included	include	VBN
10_1101-2021_01_07_425794	182	15	in	in	IN
10_1101-2021_01_07_425794	182	16	each	each	DT
10_1101-2021_01_07_425794	182	17	annotation	annotation	NN
10_1101-2021_01_07_425794	182	18	before	before	RB
10_1101-2021_01_07_425794	182	19	and	and	CC
10_1101-2021_01_07_425794	182	20	after	after	IN
10_1101-2021_01_07_425794	182	21	filtering	filter	VBG
10_1101-2021_01_07_425794	182	22	for	for	IN
10_1101-2021_01_07_425794	182	23	lowly	lowly	JJ
10_1101-2021_01_07_425794	182	24	expressed	express	VBN
10_1101-2021_01_07_425794	182	25	genes	gene	NNS
10_1101-2021_01_07_425794	182	26	.	.	.
10_1101-2021_01_07_425794	183	1	(	(	-LRB-
10_1101-2021_01_07_425794	183	2	B	b	NN
10_1101-2021_01_07_425794	183	3	)	)	-RRB-
10_1101-2021_01_07_425794	183	4	Venn	Venn	NNP
10_1101-2021_01_07_425794	183	5	diagram	diagram	NN
10_1101-2021_01_07_425794	183	6	comparing	comparing	NN
10_1101-2021_01_07_425794	183	7	genes	gene	NNS
10_1101-2021_01_07_425794	183	8	from	from	IN
10_1101-2021_01_07_425794	183	9	different	different	JJ
10_1101-2021_01_07_425794	183	10	annotations	annotation	NNS
10_1101-2021_01_07_425794	183	11	after	after	IN
10_1101-2021_01_07_425794	183	12	filtering	filter	VBG
10_1101-2021_01_07_425794	183	13	for	for	IN
10_1101-2021_01_07_425794	183	14	lowly	lowly	JJ
10_1101-2021_01_07_425794	183	15	expressed	express	VBN
10_1101-2021_01_07_425794	183	16	genes	gene	NNS
10_1101-2021_01_07_425794	183	17	.	.	.
10_1101-2021_01_07_425794	184	1	Distributions	distribution	NNS
10_1101-2021_01_07_425794	184	2	of	of	IN
10_1101-2021_01_07_425794	184	3	effective	effective	JJ
10_1101-2021_01_07_425794	184	4	gene	gene	NN
10_1101-2021_01_07_425794	184	5	lengths	length	NNS
10_1101-2021_01_07_425794	184	6	after	after	IN
10_1101-2021_01_07_425794	184	7	filtering	filtering	NN
10_1101-2021_01_07_425794	184	8	are	be	VBP
10_1101-2021_01_07_425794	184	9	shown	show	VBN
10_1101-2021_01_07_425794	184	10	for	for	IN
10_1101-2021_01_07_425794	184	11	all	all	DT
10_1101-2021_01_07_425794	184	12	genes	gene	NNS
10_1101-2021_01_07_425794	184	13	in	in	IN
10_1101-2021_01_07_425794	184	14	each	each	DT
10_1101-2021_01_07_425794	184	15	annotation	annotation	NN
10_1101-2021_01_07_425794	184	16	(	(	-LRB-
10_1101-2021_01_07_425794	184	17	C	c	NN
10_1101-2021_01_07_425794	184	18	)	)	-RRB-
10_1101-2021_01_07_425794	184	19	and	and	CC
10_1101-2021_01_07_425794	184	20	for	for	IN
10_1101-2021_01_07_425794	184	21	genes	gene	NNS
10_1101-2021_01_07_425794	184	22	that	that	WDT
10_1101-2021_01_07_425794	184	23	are	be	VBP
10_1101-2021_01_07_425794	184	24	common	common	JJ
10_1101-2021_01_07_425794	184	25	between	between	IN
10_1101-2021_01_07_425794	184	26	all	all	DT
10_1101-2021_01_07_425794	184	27	three	three	CD
10_1101-2021_01_07_425794	184	28	annotations	annotation	NNS
10_1101-2021_01_07_425794	184	29	(	(	-LRB-
10_1101-2021_01_07_425794	184	30	D	D	NNP
10_1101-2021_01_07_425794	184	31	)	)	-RRB-
10_1101-2021_01_07_425794	184	32	.	.	.
10_1101-2021_01_07_425794	185	1	Distributions	distribution	NNS
10_1101-2021_01_07_425794	185	2	of	of	IN
10_1101-2021_01_07_425794	185	3	differences	difference	NNS
10_1101-2021_01_07_425794	185	4	of	of	IN
10_1101-2021_01_07_425794	185	5	effective	effective	JJ
10_1101-2021_01_07_425794	185	6	gene	gene	NN
10_1101-2021_01_07_425794	185	7	lengths	length	NNS
10_1101-2021_01_07_425794	185	8	between	between	IN
10_1101-2021_01_07_425794	185	9	annotations	annotation	NNS
10_1101-2021_01_07_425794	185	10	after	after	IN
10_1101-2021_01_07_425794	185	11	filtering	filtering	NN
10_1101-2021_01_07_425794	185	12	are	be	VBP
10_1101-2021_01_07_425794	185	13	shown	show	VBN
10_1101-2021_01_07_425794	185	14	for	for	IN
10_1101-2021_01_07_425794	185	15	common	common	JJ
10_1101-2021_01_07_425794	185	16	genes	gene	NNS
10_1101-2021_01_07_425794	185	17	between	between	IN
10_1101-2021_01_07_425794	185	18	each	each	DT
10_1101-2021_01_07_425794	185	19	pair	pair	NN
10_1101-2021_01_07_425794	185	20	of	of	IN
10_1101-2021_01_07_425794	185	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	185	22	(	(	-LRB-
10_1101-2021_01_07_425794	185	23	E	E	NNP
10_1101-2021_01_07_425794	185	24	)	)	-RRB-
10_1101-2021_01_07_425794	185	25	and	and	CC
10_1101-2021_01_07_425794	185	26	for	for	IN
10_1101-2021_01_07_425794	185	27	genes	gene	NNS
10_1101-2021_01_07_425794	185	28	that	that	WDT
10_1101-2021_01_07_425794	185	29	are	be	VBP
10_1101-2021_01_07_425794	185	30	common	common	JJ
10_1101-2021_01_07_425794	185	31	between	between	IN
10_1101-2021_01_07_425794	185	32	all	all	DT
10_1101-2021_01_07_425794	185	33	three	three	CD
10_1101-2021_01_07_425794	185	34	annotations	annotation	NNS
10_1101-2021_01_07_425794	185	35	(	(	-LRB-
10_1101-2021_01_07_425794	185	36	F	F	NNP
10_1101-2021_01_07_425794	185	37	)	)	-RRB-
10_1101-2021_01_07_425794	185	38	.	.	.
10_1101-2021_01_07_425794	186	1	13	13	CD
10_1101-2021_01_07_425794	186	2	.CC	.CC	:
10_1101-2021_01_07_425794	186	3	-	-	HYPH
10_1101-2021_01_07_425794	186	4	BY	by	IN
10_1101-2021_01_07_425794	186	5	-	-	HYPH
10_1101-2021_01_07_425794	186	6	NC	NC	NNP
10_1101-2021_01_07_425794	186	7	-	-	HYPH
10_1101-2021_01_07_425794	186	8	ND	ND	NNP
10_1101-2021_01_07_425794	186	9	4.0	4.0	CD
10_1101-2021_01_07_425794	186	10	International	international	JJ
10_1101-2021_01_07_425794	186	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	186	12	available	available	JJ
10_1101-2021_01_07_425794	186	13	under	under	IN
10_1101-2021_01_07_425794	186	14	a	a	DT
10_1101-2021_01_07_425794	186	15	(	(	-LRB-
10_1101-2021_01_07_425794	186	16	which	which	WDT
10_1101-2021_01_07_425794	186	17	was	be	VBD
10_1101-2021_01_07_425794	186	18	not	not	RB
10_1101-2021_01_07_425794	186	19	certified	certify	VBN
10_1101-2021_01_07_425794	186	20	by	by	IN
10_1101-2021_01_07_425794	186	21	peer	peer	NN
10_1101-2021_01_07_425794	186	22	review	review	NN
10_1101-2021_01_07_425794	186	23	)	)	-RRB-
10_1101-2021_01_07_425794	186	24	is	be	VBZ
10_1101-2021_01_07_425794	186	25	the	the	DT
10_1101-2021_01_07_425794	186	26	author	author	NN
10_1101-2021_01_07_425794	186	27	/	/	SYM
10_1101-2021_01_07_425794	186	28	funder	funder	NN
10_1101-2021_01_07_425794	186	29	,	,	,
10_1101-2021_01_07_425794	186	30	who	who	WP
10_1101-2021_01_07_425794	186	31	has	have	VBZ
10_1101-2021_01_07_425794	186	32	granted	grant	VBN
10_1101-2021_01_07_425794	186	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	186	34	a	a	DT
10_1101-2021_01_07_425794	186	35	license	license	NN
10_1101-2021_01_07_425794	186	36	to	to	TO
10_1101-2021_01_07_425794	186	37	display	display	VB
10_1101-2021_01_07_425794	186	38	the	the	DT
10_1101-2021_01_07_425794	186	39	preprint	preprint	NN
10_1101-2021_01_07_425794	186	40	in	in	IN
10_1101-2021_01_07_425794	186	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	186	42	.	.	.
10_1101-2021_01_07_425794	187	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	187	2	is	be	VBZ
10_1101-2021_01_07_425794	187	3	The	the	DT
10_1101-2021_01_07_425794	187	4	copyright	copyright	NN
10_1101-2021_01_07_425794	187	5	holder	holder	NN
10_1101-2021_01_07_425794	187	6	for	for	IN
10_1101-2021_01_07_425794	187	7	this	this	DT
10_1101-2021_01_07_425794	187	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	187	9	version	version	NN
10_1101-2021_01_07_425794	187	10	posted	post	VBD
10_1101-2021_01_07_425794	187	11	January	January	NNP
10_1101-2021_01_07_425794	187	12	8	8	CD
10_1101-2021_01_07_425794	187	13	,	,	,
10_1101-2021_01_07_425794	187	14	2021	2021	CD
10_1101-2021_01_07_425794	187	15	.	.	.
10_1101-2021_01_07_425794	187	16	;	;	:
10_1101-2021_01_07_425794	187	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	187	18	:	:	:
10_1101-2021_01_07_425794	187	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	187	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	187	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	187	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	187	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	187	24	genes	gene	NNS
10_1101-2021_01_07_425794	187	25	had	have	VBD
10_1101-2021_01_07_425794	187	26	the	the	DT
10_1101-2021_01_07_425794	187	27	shortest	short	JJS
10_1101-2021_01_07_425794	187	28	gene	gene	NN
10_1101-2021_01_07_425794	187	29	lengths	length	NNS
10_1101-2021_01_07_425794	187	30	.	.	.
10_1101-2021_01_07_425794	188	1	3.5	3.5	CD
10_1101-2021_01_07_425794	188	2	Comparison	comparison	NN
10_1101-2021_01_07_425794	188	3	of	of	IN
10_1101-2021_01_07_425794	188	4	titration	titration	NN
10_1101-2021_01_07_425794	188	5	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	188	6	preservation	preservation	NN
10_1101-2021_01_07_425794	188	7	To	to	TO
10_1101-2021_01_07_425794	188	8	assess	assess	VB
10_1101-2021_01_07_425794	188	9	the	the	DT
10_1101-2021_01_07_425794	188	10	impact	impact	NN
10_1101-2021_01_07_425794	188	11	of	of	IN
10_1101-2021_01_07_425794	188	12	gene	gene	NN
10_1101-2021_01_07_425794	188	13	annotation	annotation	NN
10_1101-2021_01_07_425794	188	14	choice	choice	NN
10_1101-2021_01_07_425794	188	15	on	on	IN
10_1101-2021_01_07_425794	188	16	the	the	DT
10_1101-2021_01_07_425794	188	17	accuracy	accuracy	NN
10_1101-2021_01_07_425794	188	18	of	of	IN
10_1101-2021_01_07_425794	188	19	RNA	RNA	NNP
10_1101-2021_01_07_425794	188	20	-	-	HYPH
10_1101-2021_01_07_425794	188	21	seq	seq	NN
10_1101-2021_01_07_425794	188	22	quantification	quantification	NN
10_1101-2021_01_07_425794	188	23	result	result	NN
10_1101-2021_01_07_425794	188	24	,	,	,
10_1101-2021_01_07_425794	188	25	we	-PRON-	PRP
10_1101-2021_01_07_425794	188	26	utilized	utilize	VBD
10_1101-2021_01_07_425794	188	27	as	as	IN
10_1101-2021_01_07_425794	188	28	ground	ground	NN
10_1101-2021_01_07_425794	188	29	truth	truth	NN
10_1101-2021_01_07_425794	188	30	the	the	DT
10_1101-2021_01_07_425794	188	31	inbuilt	inbuilt	NN
10_1101-2021_01_07_425794	188	32	titration	titration	NN
10_1101-2021_01_07_425794	188	33	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	188	34	in	in	IN
10_1101-2021_01_07_425794	188	35	the	the	DT
10_1101-2021_01_07_425794	188	36	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	188	37	data	datum	NNS
10_1101-2021_01_07_425794	188	38	,	,	,
10_1101-2021_01_07_425794	188	39	the	the	DT
10_1101-2021_01_07_425794	188	40	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	188	41	RT	RT	NNP
10_1101-2021_01_07_425794	188	42	-	-	HYPH
10_1101-2021_01_07_425794	188	43	PCR	PCR	NNP
10_1101-2021_01_07_425794	188	44	data	datum	NNS
10_1101-2021_01_07_425794	188	45	and	and	CC
10_1101-2021_01_07_425794	188	46	the	the	DT
10_1101-2021_01_07_425794	188	47	microarray	microarray	JJ
10_1101-2021_01_07_425794	188	48	data	datum	NNS
10_1101-2021_01_07_425794	188	49	generated	generate	VBN
10_1101-2021_01_07_425794	188	50	for	for	IN
10_1101-2021_01_07_425794	188	51	the	the	DT
10_1101-2021_01_07_425794	188	52	same	same	JJ
10_1101-2021_01_07_425794	188	53	samples	sample	NNS
10_1101-2021_01_07_425794	188	54	,	,	,
10_1101-2021_01_07_425794	188	55	to	to	TO
10_1101-2021_01_07_425794	188	56	evaluate	evaluate	VB
10_1101-2021_01_07_425794	188	57	which	which	WDT
10_1101-2021_01_07_425794	188	58	annotation	annotation	NN
10_1101-2021_01_07_425794	188	59	gives	give	VBZ
10_1101-2021_01_07_425794	188	60	rise	rise	NN
10_1101-2021_01_07_425794	188	61	to	to	IN
10_1101-2021_01_07_425794	188	62	a	a	DT
10_1101-2021_01_07_425794	188	63	better	well	JJR
10_1101-2021_01_07_425794	188	64	expression	expression	NN
10_1101-2021_01_07_425794	188	65	correlation	correlation	NN
10_1101-2021_01_07_425794	188	66	of	of	IN
10_1101-2021_01_07_425794	188	67	the	the	DT
10_1101-2021_01_07_425794	188	68	RNA	RNA	NNP
10_1101-2021_01_07_425794	188	69	-	-	HYPH
10_1101-2021_01_07_425794	188	70	seq	seq	NN
10_1101-2021_01_07_425794	188	71	quantification	quantification	NN
10_1101-2021_01_07_425794	188	72	data	datum	NNS
10_1101-2021_01_07_425794	188	73	with	with	IN
10_1101-2021_01_07_425794	188	74	the	the	DT
10_1101-2021_01_07_425794	188	75	truth	truth	NN
10_1101-2021_01_07_425794	188	76	.	.	.
10_1101-2021_01_07_425794	189	1	In	in	IN
10_1101-2021_01_07_425794	189	2	this	this	DT
10_1101-2021_01_07_425794	189	3	section	section	NN
10_1101-2021_01_07_425794	189	4	,	,	,
10_1101-2021_01_07_425794	189	5	we	-PRON-	PRP
10_1101-2021_01_07_425794	189	6	compared	compare	VBD
10_1101-2021_01_07_425794	189	7	the	the	DT
10_1101-2021_01_07_425794	189	8	ability	ability	NN
10_1101-2021_01_07_425794	189	9	of	of	IN
10_1101-2021_01_07_425794	189	10	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	189	11	and	and	CC
10_1101-2021_01_07_425794	189	12	the	the	DT
10_1101-2021_01_07_425794	189	13	two	two	CD
10_1101-2021_01_07_425794	189	14	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	189	15	annotations	annotation	NNS
10_1101-2021_01_07_425794	189	16	in	in	IN
10_1101-2021_01_07_425794	189	17	retaining	retain	VBG
10_1101-2021_01_07_425794	189	18	the	the	DT
10_1101-2021_01_07_425794	189	19	inbuilt	inbuilt	NN
10_1101-2021_01_07_425794	189	20	titration	titration	NN
10_1101-2021_01_07_425794	189	21	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	189	22	in	in	IN
10_1101-2021_01_07_425794	189	23	the	the	DT
10_1101-2021_01_07_425794	189	24	RNA	RNA	NNP
10_1101-2021_01_07_425794	189	25	-	-	HYPH
10_1101-2021_01_07_425794	189	26	seq	seq	NN
10_1101-2021_01_07_425794	189	27	dataset	dataset	NN
10_1101-2021_01_07_425794	189	28	.	.	.
10_1101-2021_01_07_425794	190	1	In	in	IN
10_1101-2021_01_07_425794	190	2	Figure	Figure	NNP
10_1101-2021_01_07_425794	190	3	5	5	CD
10_1101-2021_01_07_425794	190	4	,	,	,
10_1101-2021_01_07_425794	190	5	the	the	DT
10_1101-2021_01_07_425794	190	6	reference	reference	NN
10_1101-2021_01_07_425794	190	7	titration	titration	NN
10_1101-2021_01_07_425794	190	8	curve	curve	NN
10_1101-2021_01_07_425794	190	9	depicts	depict	VBZ
10_1101-2021_01_07_425794	190	10	the	the	DT
10_1101-2021_01_07_425794	190	11	expected	expect	VBN
10_1101-2021_01_07_425794	190	12	fold	fold	JJ
10_1101-2021_01_07_425794	190	13	change	change	NN
10_1101-2021_01_07_425794	190	14	that	that	IN
10_1101-2021_01_07_425794	190	15	genes	gene	NNS
10_1101-2021_01_07_425794	190	16	are	be	VBP
10_1101-2021_01_07_425794	190	17	expected	expect	VBN
10_1101-2021_01_07_425794	190	18	to	to	TO
10_1101-2021_01_07_425794	190	19	follow	follow	VB
10_1101-2021_01_07_425794	190	20	in	in	IN
10_1101-2021_01_07_425794	190	21	sample	sample	NN
10_1101-2021_01_07_425794	190	22	C	C	NNP
10_1101-2021_01_07_425794	190	23	vs	vs	IN
10_1101-2021_01_07_425794	190	24	sample	sample	NN
10_1101-2021_01_07_425794	190	25	D	d	NN
10_1101-2021_01_07_425794	190	26	based	base	VBN
10_1101-2021_01_07_425794	190	27	on	on	IN
10_1101-2021_01_07_425794	190	28	the	the	DT
10_1101-2021_01_07_425794	190	29	fold	fold	JJ
10_1101-2021_01_07_425794	190	30	change	change	NN
10_1101-2021_01_07_425794	190	31	in	in	IN
10_1101-2021_01_07_425794	190	32	sample	sample	NN
10_1101-2021_01_07_425794	190	33	A	A	NNP
10_1101-2021_01_07_425794	190	34	vs	vs	FW
10_1101-2021_01_07_425794	190	35	sample	sample	NN
10_1101-2021_01_07_425794	190	36	B.	b.	NN
10_1101-2021_01_07_425794	191	1	This	this	DT
10_1101-2021_01_07_425794	191	2	is	be	VBZ
10_1101-2021_01_07_425794	191	3	computed	compute	VBN
10_1101-2021_01_07_425794	191	4	using	use	VBG
10_1101-2021_01_07_425794	191	5	the	the	DT
10_1101-2021_01_07_425794	191	6	Equation	Equation	NNP
10_1101-2021_01_07_425794	191	7	(	(	-LRB-
10_1101-2021_01_07_425794	191	8	1	1	CD
10_1101-2021_01_07_425794	191	9	)	)	-RRB-
10_1101-2021_01_07_425794	191	10	(	(	-LRB-
10_1101-2021_01_07_425794	191	11	see	see	VB
10_1101-2021_01_07_425794	191	12	MATERIALS	material	NNS
10_1101-2021_01_07_425794	191	13	AND	and	CC
10_1101-2021_01_07_425794	191	14	METHODS	method	NNS
10_1101-2021_01_07_425794	191	15	)	)	-RRB-
10_1101-2021_01_07_425794	191	16	.	.	.
10_1101-2021_01_07_425794	192	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	192	2	then	then	RB
10_1101-2021_01_07_425794	192	3	calculated	calculate	VBD
10_1101-2021_01_07_425794	192	4	the	the	DT
10_1101-2021_01_07_425794	192	5	Mean	Mean	NNP
10_1101-2021_01_07_425794	192	6	Squared	Squared	NNP
10_1101-2021_01_07_425794	192	7	Error	Error	NNP
10_1101-2021_01_07_425794	192	8	(	(	-LRB-
10_1101-2021_01_07_425794	192	9	MSE	MSE	NNP
10_1101-2021_01_07_425794	192	10	)	)	-RRB-
10_1101-2021_01_07_425794	192	11	between	between	IN
10_1101-2021_01_07_425794	192	12	the	the	DT
10_1101-2021_01_07_425794	192	13	reference	reference	NN
10_1101-2021_01_07_425794	192	14	titration	titration	NN
10_1101-2021_01_07_425794	192	15	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	192	16	and	and	CC
10_1101-2021_01_07_425794	192	17	the	the	DT
10_1101-2021_01_07_425794	192	18	titration	titration	NN
10_1101-2021_01_07_425794	192	19	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	192	20	obtained	obtain	VBN
10_1101-2021_01_07_425794	192	21	from	from	IN
10_1101-2021_01_07_425794	192	22	each	each	DT
10_1101-2021_01_07_425794	192	23	annotation	annotation	NN
10_1101-2021_01_07_425794	192	24	.	.	.
10_1101-2021_01_07_425794	193	1	A	a	DT
10_1101-2021_01_07_425794	193	2	smaller	small	JJR
10_1101-2021_01_07_425794	193	3	MSE	mse	NN
10_1101-2021_01_07_425794	193	4	value	value	NN
10_1101-2021_01_07_425794	193	5	means	mean	VBZ
10_1101-2021_01_07_425794	193	6	that	that	IN
10_1101-2021_01_07_425794	193	7	the	the	DT
10_1101-2021_01_07_425794	193	8	generated	generate	VBN
10_1101-2021_01_07_425794	193	9	quantification	quantification	NN
10_1101-2021_01_07_425794	193	10	data	datum	NNS
10_1101-2021_01_07_425794	193	11	is	be	VBZ
10_1101-2021_01_07_425794	193	12	closer	close	JJR
10_1101-2021_01_07_425794	193	13	to	to	IN
10_1101-2021_01_07_425794	193	14	the	the	DT
10_1101-2021_01_07_425794	193	15	truth	truth	NN
10_1101-2021_01_07_425794	193	16	.	.	.
10_1101-2021_01_07_425794	194	1	Figure	figure	NN
10_1101-2021_01_07_425794	194	2	5	5	CD
10_1101-2021_01_07_425794	194	3	shows	show	VBZ
10_1101-2021_01_07_425794	194	4	that	that	IN
10_1101-2021_01_07_425794	194	5	the	the	DT
10_1101-2021_01_07_425794	194	6	MSE	MSE	NNP
10_1101-2021_01_07_425794	194	7	computed	compute	VBD
10_1101-2021_01_07_425794	194	8	for	for	IN
10_1101-2021_01_07_425794	194	9	the	the	DT
10_1101-2021_01_07_425794	194	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	194	11	-	-	HYPH
10_1101-2021_01_07_425794	194	12	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	194	13	annotation	annotation	NN
10_1101-2021_01_07_425794	194	14	is	be	VBZ
10_1101-2021_01_07_425794	194	15	constantly	constantly	RB
10_1101-2021_01_07_425794	194	16	lower	low	JJR
10_1101-2021_01_07_425794	194	17	than	than	IN
10_1101-2021_01_07_425794	194	18	those	those	DT
10_1101-2021_01_07_425794	194	19	computed	compute	VBN
10_1101-2021_01_07_425794	194	20	for	for	IN
10_1101-2021_01_07_425794	194	21	the	the	DT
10_1101-2021_01_07_425794	194	22	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	194	23	and	and	CC
10_1101-2021_01_07_425794	194	24	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	194	25	-	-	HYPH
10_1101-2021_01_07_425794	194	26	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	194	27	annotations	annotation	NNS
10_1101-2021_01_07_425794	194	28	,	,	,
10_1101-2021_01_07_425794	194	29	regardless	regardless	RB
10_1101-2021_01_07_425794	194	30	if	if	IN
10_1101-2021_01_07_425794	194	31	filtering	filtering	NN
10_1101-2021_01_07_425794	194	32	was	be	VBD
10_1101-2021_01_07_425794	194	33	applied	apply	VBN
10_1101-2021_01_07_425794	194	34	or	or	CC
10_1101-2021_01_07_425794	194	35	if	if	IN
10_1101-2021_01_07_425794	194	36	only	only	RB
10_1101-2021_01_07_425794	194	37	common	common	JJ
10_1101-2021_01_07_425794	194	38	genes	gene	NNS
10_1101-2021_01_07_425794	194	39	were	be	VBD
10_1101-2021_01_07_425794	194	40	included	include	VBN
10_1101-2021_01_07_425794	194	41	for	for	IN
10_1101-2021_01_07_425794	194	42	comparison	comparison	NN
10_1101-2021_01_07_425794	194	43	.	.	.
10_1101-2021_01_07_425794	195	1	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	195	2	-	-	HYPH
10_1101-2021_01_07_425794	195	3	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	195	4	was	be	VBD
10_1101-2021_01_07_425794	195	5	also	also	RB
10_1101-2021_01_07_425794	195	6	found	find	VBN
10_1101-2021_01_07_425794	195	7	to	to	TO
10_1101-2021_01_07_425794	195	8	yield	yield	VB
10_1101-2021_01_07_425794	195	9	comparable	comparable	JJ
10_1101-2021_01_07_425794	195	10	or	or	CC
10_1101-2021_01_07_425794	195	11	lower	low	JJR
10_1101-2021_01_07_425794	195	12	MSE	MSE	NNP
10_1101-2021_01_07_425794	195	13	compared	compare	VBN
10_1101-2021_01_07_425794	195	14	to	to	IN
10_1101-2021_01_07_425794	195	15	the	the	DT
10_1101-2021_01_07_425794	195	16	other	other	JJ
10_1101-2021_01_07_425794	195	17	two	two	CD
10_1101-2021_01_07_425794	195	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	195	19	when	when	WRB
10_1101-2021_01_07_425794	195	20	the	the	DT
10_1101-2021_01_07_425794	195	21	data	datum	NNS
10_1101-2021_01_07_425794	195	22	were	be	VBD
10_1101-2021_01_07_425794	195	23	TMM	TMM	NNP
10_1101-2021_01_07_425794	195	24	or	or	CC
10_1101-2021_01_07_425794	195	25	quantile	quantile	NN
10_1101-2021_01_07_425794	195	26	normalized	normalized	JJ
10_1101-2021_01_07_425794	195	27	(	(	-LRB-
10_1101-2021_01_07_425794	195	28	Supplementary	Supplementary	NNP
10_1101-2021_01_07_425794	195	29	Figures	Figures	NNPS
10_1101-2021_01_07_425794	195	30	S4	S4	NNP
10_1101-2021_01_07_425794	195	31	and	and	CC
10_1101-2021_01_07_425794	195	32	S5	s5	NN
10_1101-2021_01_07_425794	195	33	)	)	-RRB-
10_1101-2021_01_07_425794	195	34	,	,	,
10_1101-2021_01_07_425794	195	35	in	in	IN
10_1101-2021_01_07_425794	195	36	addition	addition	NN
10_1101-2021_01_07_425794	195	37	to	to	IN
10_1101-2021_01_07_425794	195	38	the	the	DT
10_1101-2021_01_07_425794	195	39	library	library	NN
10_1101-2021_01_07_425794	195	40	-	-	HYPH
10_1101-2021_01_07_425794	195	41	size	size	NN
10_1101-2021_01_07_425794	195	42	normalized	normalize	VBN
10_1101-2021_01_07_425794	195	43	data	datum	NNS
10_1101-2021_01_07_425794	195	44	shown	show	VBN
10_1101-2021_01_07_425794	195	45	in	in	IN
10_1101-2021_01_07_425794	195	46	Figure	Figure	NNP
10_1101-2021_01_07_425794	195	47	5	5	CD
10_1101-2021_01_07_425794	195	48	.	.	.
10_1101-2021_01_07_425794	196	1	These	these	DT
10_1101-2021_01_07_425794	196	2	results	result	NNS
10_1101-2021_01_07_425794	196	3	demonstrated	demonstrate	VBD
10_1101-2021_01_07_425794	196	4	that	that	IN
10_1101-2021_01_07_425794	196	5	the	the	DT
10_1101-2021_01_07_425794	196	6	use	use	NN
10_1101-2021_01_07_425794	196	7	of	of	IN
10_1101-2021_01_07_425794	196	8	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	196	9	-	-	HYPH
10_1101-2021_01_07_425794	196	10	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	196	11	annotation	annotation	NN
10_1101-2021_01_07_425794	196	12	led	lead	VBD
10_1101-2021_01_07_425794	196	13	to	to	IN
10_1101-2021_01_07_425794	196	14	better	well	JJR
10_1101-2021_01_07_425794	196	15	quantification	quantification	NN
10_1101-2021_01_07_425794	196	16	accuracy	accuracy	NN
10_1101-2021_01_07_425794	196	17	for	for	IN
10_1101-2021_01_07_425794	196	18	the	the	DT
10_1101-2021_01_07_425794	196	19	RNA	RNA	NNP
10_1101-2021_01_07_425794	196	20	-	-	HYPH
10_1101-2021_01_07_425794	196	21	seq	seq	NN
10_1101-2021_01_07_425794	196	22	data	datum	NNS
10_1101-2021_01_07_425794	196	23	.	.	.
10_1101-2021_01_07_425794	197	1	14	14	CD
10_1101-2021_01_07_425794	197	2	.CC	.CC	:
10_1101-2021_01_07_425794	197	3	-	-	HYPH
10_1101-2021_01_07_425794	197	4	BY	by	IN
10_1101-2021_01_07_425794	197	5	-	-	HYPH
10_1101-2021_01_07_425794	197	6	NC	NC	NNP
10_1101-2021_01_07_425794	197	7	-	-	HYPH
10_1101-2021_01_07_425794	197	8	ND	ND	NNP
10_1101-2021_01_07_425794	197	9	4.0	4.0	CD
10_1101-2021_01_07_425794	197	10	International	international	JJ
10_1101-2021_01_07_425794	197	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	197	12	available	available	JJ
10_1101-2021_01_07_425794	197	13	under	under	IN
10_1101-2021_01_07_425794	197	14	a	a	DT
10_1101-2021_01_07_425794	197	15	(	(	-LRB-
10_1101-2021_01_07_425794	197	16	which	which	WDT
10_1101-2021_01_07_425794	197	17	was	be	VBD
10_1101-2021_01_07_425794	197	18	not	not	RB
10_1101-2021_01_07_425794	197	19	certified	certify	VBN
10_1101-2021_01_07_425794	197	20	by	by	IN
10_1101-2021_01_07_425794	197	21	peer	peer	NN
10_1101-2021_01_07_425794	197	22	review	review	NN
10_1101-2021_01_07_425794	197	23	)	)	-RRB-
10_1101-2021_01_07_425794	197	24	is	be	VBZ
10_1101-2021_01_07_425794	197	25	the	the	DT
10_1101-2021_01_07_425794	197	26	author	author	NN
10_1101-2021_01_07_425794	197	27	/	/	SYM
10_1101-2021_01_07_425794	197	28	funder	funder	NN
10_1101-2021_01_07_425794	197	29	,	,	,
10_1101-2021_01_07_425794	197	30	who	who	WP
10_1101-2021_01_07_425794	197	31	has	have	VBZ
10_1101-2021_01_07_425794	197	32	granted	grant	VBN
10_1101-2021_01_07_425794	197	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	197	34	a	a	DT
10_1101-2021_01_07_425794	197	35	license	license	NN
10_1101-2021_01_07_425794	197	36	to	to	TO
10_1101-2021_01_07_425794	197	37	display	display	VB
10_1101-2021_01_07_425794	197	38	the	the	DT
10_1101-2021_01_07_425794	197	39	preprint	preprint	NN
10_1101-2021_01_07_425794	197	40	in	in	IN
10_1101-2021_01_07_425794	197	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	197	42	.	.	.
10_1101-2021_01_07_425794	198	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	198	2	is	be	VBZ
10_1101-2021_01_07_425794	198	3	The	the	DT
10_1101-2021_01_07_425794	198	4	copyright	copyright	NN
10_1101-2021_01_07_425794	198	5	holder	holder	NN
10_1101-2021_01_07_425794	198	6	for	for	IN
10_1101-2021_01_07_425794	198	7	this	this	DT
10_1101-2021_01_07_425794	198	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	198	9	version	version	NN
10_1101-2021_01_07_425794	198	10	posted	post	VBD
10_1101-2021_01_07_425794	198	11	January	January	NNP
10_1101-2021_01_07_425794	198	12	8	8	CD
10_1101-2021_01_07_425794	198	13	,	,	,
10_1101-2021_01_07_425794	198	14	2021	2021	CD
10_1101-2021_01_07_425794	198	15	.	.	.
10_1101-2021_01_07_425794	198	16	;	;	:
10_1101-2021_01_07_425794	198	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	198	18	:	:	:
10_1101-2021_01_07_425794	198	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	198	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	198	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	198	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	198	23	Figure	figure	NN
10_1101-2021_01_07_425794	198	24	5	5	CD
10_1101-2021_01_07_425794	198	25	:	:	:
10_1101-2021_01_07_425794	198	26	Titration	titration	NN
10_1101-2021_01_07_425794	198	27	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	198	28	plots	plot	NNS
10_1101-2021_01_07_425794	198	29	.	.	.
10_1101-2021_01_07_425794	199	1	The	the	DT
10_1101-2021_01_07_425794	199	2	ability	ability	NN
10_1101-2021_01_07_425794	199	3	of	of	IN
10_1101-2021_01_07_425794	199	4	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	199	5	,	,	,
10_1101-2021_01_07_425794	199	6	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	199	7	-	-	HYPH
10_1101-2021_01_07_425794	199	8	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	199	9	and	and	CC
10_1101-2021_01_07_425794	199	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	199	11	-	-	HYPH
10_1101-2021_01_07_425794	199	12	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	199	13	to	to	TO
10_1101-2021_01_07_425794	199	14	retain	retain	VB
10_1101-2021_01_07_425794	199	15	the	the	DT
10_1101-2021_01_07_425794	199	16	titration	titration	NN
10_1101-2021_01_07_425794	199	17	monotonicity	monotonicity	NN
10_1101-2021_01_07_425794	199	18	built	build	VBN
10_1101-2021_01_07_425794	199	19	into	into	IN
10_1101-2021_01_07_425794	199	20	the	the	DT
10_1101-2021_01_07_425794	199	21	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	199	22	RNA	RNA	NNP
10_1101-2021_01_07_425794	199	23	-	-	HYPH
10_1101-2021_01_07_425794	199	24	seq	seq	NN
10_1101-2021_01_07_425794	199	25	data	datum	NNS
10_1101-2021_01_07_425794	199	26	was	be	VBD
10_1101-2021_01_07_425794	199	27	measured	measure	VBN
10_1101-2021_01_07_425794	199	28	using	use	VBG
10_1101-2021_01_07_425794	199	29	the	the	DT
10_1101-2021_01_07_425794	199	30	Mean	Mean	NNP
10_1101-2021_01_07_425794	199	31	Squared	Squared	NNP
10_1101-2021_01_07_425794	199	32	Error	Error	NNP
10_1101-2021_01_07_425794	199	33	(	(	-LRB-
10_1101-2021_01_07_425794	199	34	MSE	MSE	NNP
10_1101-2021_01_07_425794	199	35	)	)	-RRB-
10_1101-2021_01_07_425794	199	36	between	between	IN
10_1101-2021_01_07_425794	199	37	the	the	DT
10_1101-2021_01_07_425794	199	38	reference	reference	NN
10_1101-2021_01_07_425794	199	39	titration	titration	NN
10_1101-2021_01_07_425794	199	40	and	and	CC
10_1101-2021_01_07_425794	199	41	the	the	DT
10_1101-2021_01_07_425794	199	42	actual	actual	JJ
10_1101-2021_01_07_425794	199	43	titration	titration	NN
10_1101-2021_01_07_425794	199	44	obtained	obtain	VBN
10_1101-2021_01_07_425794	199	45	from	from	IN
10_1101-2021_01_07_425794	199	46	each	each	DT
10_1101-2021_01_07_425794	199	47	an-	an-	RB
10_1101-2021_01_07_425794	199	48	notation	notation	NN
10_1101-2021_01_07_425794	199	49	.	.	.
10_1101-2021_01_07_425794	200	1	The	the	DT
10_1101-2021_01_07_425794	200	2	red	red	JJ
10_1101-2021_01_07_425794	200	3	curve	curve	NN
10_1101-2021_01_07_425794	200	4	in	in	IN
10_1101-2021_01_07_425794	200	5	each	each	DT
10_1101-2021_01_07_425794	200	6	plot	plot	NN
10_1101-2021_01_07_425794	200	7	represents	represent	VBZ
10_1101-2021_01_07_425794	200	8	the	the	DT
10_1101-2021_01_07_425794	200	9	reference	reference	NN
10_1101-2021_01_07_425794	200	10	titration	titration	NN
10_1101-2021_01_07_425794	200	11	calculated	calculate	VBN
10_1101-2021_01_07_425794	200	12	from	from	IN
10_1101-2021_01_07_425794	200	13	using	use	VBG
10_1101-2021_01_07_425794	200	14	Equation	Equation	NNP
10_1101-2021_01_07_425794	200	15	(	(	-LRB-
10_1101-2021_01_07_425794	200	16	1	1	CD
10_1101-2021_01_07_425794	200	17	)	)	-RRB-
10_1101-2021_01_07_425794	200	18	.	.	.
10_1101-2021_01_07_425794	201	1	Plots	plot	NNS
10_1101-2021_01_07_425794	201	2	in	in	IN
10_1101-2021_01_07_425794	201	3	the	the	DT
10_1101-2021_01_07_425794	201	4	top	top	NN
10_1101-2021_01_07_425794	201	5	row	row	NN
10_1101-2021_01_07_425794	201	6	include	include	VBP
10_1101-2021_01_07_425794	201	7	all	all	PDT
10_1101-2021_01_07_425794	201	8	the	the	DT
10_1101-2021_01_07_425794	201	9	genes	gene	NNS
10_1101-2021_01_07_425794	201	10	available	available	JJ
10_1101-2021_01_07_425794	201	11	in	in	IN
10_1101-2021_01_07_425794	201	12	each	each	DT
10_1101-2021_01_07_425794	201	13	annotation	annotation	NN
10_1101-2021_01_07_425794	201	14	.	.	.
10_1101-2021_01_07_425794	202	1	Plots	plot	NNS
10_1101-2021_01_07_425794	202	2	in	in	IN
10_1101-2021_01_07_425794	202	3	the	the	DT
10_1101-2021_01_07_425794	202	4	middle	middle	JJ
10_1101-2021_01_07_425794	202	5	row	row	NN
10_1101-2021_01_07_425794	202	6	includes	include	VBZ
10_1101-2021_01_07_425794	202	7	those	those	DT
10_1101-2021_01_07_425794	202	8	genes	gene	NNS
10_1101-2021_01_07_425794	202	9	that	that	WDT
10_1101-2021_01_07_425794	202	10	remained	remain	VBD
10_1101-2021_01_07_425794	202	11	after	after	IN
10_1101-2021_01_07_425794	202	12	filtering	filter	VBG
10_1101-2021_01_07_425794	202	13	for	for	IN
10_1101-2021_01_07_425794	202	14	lowly	lowly	JJ
10_1101-2021_01_07_425794	202	15	expressed	express	VBN
10_1101-2021_01_07_425794	202	16	genes	gene	NNS
10_1101-2021_01_07_425794	202	17	,	,	,
10_1101-2021_01_07_425794	202	18	in	in	IN
10_1101-2021_01_07_425794	202	19	each	each	DT
10_1101-2021_01_07_425794	202	20	annotation	annotation	NN
10_1101-2021_01_07_425794	202	21	.	.	.
10_1101-2021_01_07_425794	203	1	Plots	plot	NNS
10_1101-2021_01_07_425794	203	2	in	in	IN
10_1101-2021_01_07_425794	203	3	the	the	DT
10_1101-2021_01_07_425794	203	4	bottom	bottom	NN
10_1101-2021_01_07_425794	203	5	row	row	NN
10_1101-2021_01_07_425794	203	6	includes	include	VBZ
10_1101-2021_01_07_425794	203	7	genes	gene	NNS
10_1101-2021_01_07_425794	203	8	that	that	WDT
10_1101-2021_01_07_425794	203	9	are	be	VBP
10_1101-2021_01_07_425794	203	10	common	common	JJ
10_1101-2021_01_07_425794	203	11	between	between	IN
10_1101-2021_01_07_425794	203	12	the	the	DT
10_1101-2021_01_07_425794	203	13	three	three	CD
10_1101-2021_01_07_425794	203	14	annotations	annotation	NNS
10_1101-2021_01_07_425794	203	15	after	after	IN
10_1101-2021_01_07_425794	203	16	the	the	DT
10_1101-2021_01_07_425794	203	17	expression	expression	NN
10_1101-2021_01_07_425794	203	18	filtering	filtering	NN
10_1101-2021_01_07_425794	203	19	was	be	VBD
10_1101-2021_01_07_425794	203	20	performed	perform	VBN
10_1101-2021_01_07_425794	203	21	.	.	.
10_1101-2021_01_07_425794	204	1	In	in	IN
10_1101-2021_01_07_425794	204	2	each	each	DT
10_1101-2021_01_07_425794	204	3	plot	plot	NN
10_1101-2021_01_07_425794	204	4	,	,	,
10_1101-2021_01_07_425794	204	5	the	the	DT
10_1101-2021_01_07_425794	204	6	horizontal	horizontal	JJ
10_1101-2021_01_07_425794	204	7	axis	axis	NNP
10_1101-2021_01_07_425794	204	8	represents	represent	VBZ
10_1101-2021_01_07_425794	204	9	the	the	DT
10_1101-2021_01_07_425794	204	10	log2	log2	NN
10_1101-2021_01_07_425794	204	11	fold	fold	VB
10_1101-2021_01_07_425794	204	12	changes	change	NNS
10_1101-2021_01_07_425794	204	13	of	of	IN
10_1101-2021_01_07_425794	204	14	gene	gene	NN
10_1101-2021_01_07_425794	204	15	expres-	expres-	XX
10_1101-2021_01_07_425794	204	16	sion	sion	NN
10_1101-2021_01_07_425794	204	17	between	between	IN
10_1101-2021_01_07_425794	204	18	samples	sample	NNS
10_1101-2021_01_07_425794	204	19	A	a	NN
10_1101-2021_01_07_425794	204	20	and	and	CC
10_1101-2021_01_07_425794	204	21	B	b	NN
10_1101-2021_01_07_425794	204	22	and	and	CC
10_1101-2021_01_07_425794	204	23	the	the	DT
10_1101-2021_01_07_425794	204	24	vertical	vertical	JJ
10_1101-2021_01_07_425794	204	25	axis	axi	NNS
10_1101-2021_01_07_425794	204	26	represents	represent	VBZ
10_1101-2021_01_07_425794	204	27	the	the	DT
10_1101-2021_01_07_425794	204	28	log2	log2	NN
10_1101-2021_01_07_425794	204	29	fold	fold	VB
10_1101-2021_01_07_425794	204	30	changes	change	NNS
10_1101-2021_01_07_425794	204	31	of	of	IN
10_1101-2021_01_07_425794	204	32	gene	gene	NN
10_1101-2021_01_07_425794	204	33	expression	expression	NN
10_1101-2021_01_07_425794	204	34	between	between	IN
10_1101-2021_01_07_425794	204	35	samples	sample	NNS
10_1101-2021_01_07_425794	204	36	C	C	NNP
10_1101-2021_01_07_425794	204	37	and	and	CC
10_1101-2021_01_07_425794	204	38	D.	D.	NNP
10_1101-2021_01_07_425794	204	39	3.6	3.6	CD
10_1101-2021_01_07_425794	204	40	Validation	validation	NN
10_1101-2021_01_07_425794	204	41	against	against	IN
10_1101-2021_01_07_425794	204	42	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	204	43	RT	RT	NNP
10_1101-2021_01_07_425794	204	44	-	-	HYPH
10_1101-2021_01_07_425794	204	45	PCR	PCR	NNP
10_1101-2021_01_07_425794	204	46	data	datum	NNS
10_1101-2021_01_07_425794	204	47	The	the	DT
10_1101-2021_01_07_425794	204	48	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	204	49	RT	RT	NNP
10_1101-2021_01_07_425794	204	50	-	-	HYPH
10_1101-2021_01_07_425794	204	51	PCR	PCR	NNP
10_1101-2021_01_07_425794	204	52	dataset	dataset	NN
10_1101-2021_01_07_425794	204	53	generated	generate	VBN
10_1101-2021_01_07_425794	204	54	in	in	IN
10_1101-2021_01_07_425794	204	55	the	the	DT
10_1101-2021_01_07_425794	204	56	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	204	57	study	study	NN
10_1101-2021_01_07_425794	204	58	[	[	-LRB-
10_1101-2021_01_07_425794	204	59	14	14	CD
10_1101-2021_01_07_425794	204	60	,	,	,
10_1101-2021_01_07_425794	204	61	15	15	CD
10_1101-2021_01_07_425794	204	62	]	]	-RRB-
10_1101-2021_01_07_425794	204	63	was	be	VBD
10_1101-2021_01_07_425794	204	64	used	use	VBN
10_1101-2021_01_07_425794	204	65	to	to	TO
10_1101-2021_01_07_425794	204	66	validate	validate	VB
10_1101-2021_01_07_425794	204	67	the	the	DT
10_1101-2021_01_07_425794	204	68	gene	gene	NN
10_1101-2021_01_07_425794	204	69	-	-	HYPH
10_1101-2021_01_07_425794	204	70	level	level	NN
10_1101-2021_01_07_425794	204	71	quantification	quantification	NN
10_1101-2021_01_07_425794	204	72	results	result	NNS
10_1101-2021_01_07_425794	204	73	from	from	IN
10_1101-2021_01_07_425794	204	74	the	the	DT
10_1101-2021_01_07_425794	204	75	RNA	RNA	NNP
10_1101-2021_01_07_425794	204	76	-	-	HYPH
10_1101-2021_01_07_425794	204	77	seq	seq	NN
10_1101-2021_01_07_425794	204	78	dataset	dataset	NN
10_1101-2021_01_07_425794	204	79	.	.	.
10_1101-2021_01_07_425794	205	1	This	this	DT
10_1101-2021_01_07_425794	205	2	dataset	dataset	NN
10_1101-2021_01_07_425794	205	3	contains	contain	VBZ
10_1101-2021_01_07_425794	205	4	measured	measured	JJ
10_1101-2021_01_07_425794	205	5	expression	expression	NN
10_1101-2021_01_07_425794	205	6	levels	level	NNS
10_1101-2021_01_07_425794	205	7	for	for	IN
10_1101-2021_01_07_425794	205	8	>	>	XX
10_1101-2021_01_07_425794	205	9	1,000	1,000	CD
10_1101-2021_01_07_425794	205	10	genes	gene	NNS
10_1101-2021_01_07_425794	205	11	in	in	IN
10_1101-2021_01_07_425794	205	12	the	the	DT
10_1101-2021_01_07_425794	205	13	four	four	CD
10_1101-2021_01_07_425794	205	14	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	205	15	samples	sample	NNS
10_1101-2021_01_07_425794	205	16	.	.	.
10_1101-2021_01_07_425794	206	1	The	the	DT
10_1101-2021_01_07_425794	206	2	aim	aim	NN
10_1101-2021_01_07_425794	206	3	was	be	VBD
10_1101-2021_01_07_425794	206	4	to	to	TO
10_1101-2021_01_07_425794	206	5	understand	understand	VB
10_1101-2021_01_07_425794	206	6	how	how	WRB
10_1101-2021_01_07_425794	206	7	well	well	RB
10_1101-2021_01_07_425794	206	8	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	206	9	and	and	CC
10_1101-2021_01_07_425794	206	10	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	206	11	annotated	annotate	VBD
10_1101-2021_01_07_425794	206	12	gene	gene	NN
10_1101-2021_01_07_425794	206	13	expression	expression	NN
10_1101-2021_01_07_425794	206	14	correlated	correlate	VBD
10_1101-2021_01_07_425794	206	15	with	with	IN
10_1101-2021_01_07_425794	206	16	the	the	DT
10_1101-2021_01_07_425794	206	17	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	206	18	RT	RT	NNP
10_1101-2021_01_07_425794	206	19	-	-	HYPH
10_1101-2021_01_07_425794	206	20	PCR	PCR	NNP
10_1101-2021_01_07_425794	206	21	data	datum	NNS
10_1101-2021_01_07_425794	206	22	.	.	.
10_1101-2021_01_07_425794	207	1	15	15	CD
10_1101-2021_01_07_425794	207	2	.CC	.CC	:
10_1101-2021_01_07_425794	207	3	-	-	HYPH
10_1101-2021_01_07_425794	207	4	BY	by	IN
10_1101-2021_01_07_425794	207	5	-	-	HYPH
10_1101-2021_01_07_425794	207	6	NC	NC	NNP
10_1101-2021_01_07_425794	207	7	-	-	HYPH
10_1101-2021_01_07_425794	207	8	ND	ND	NNP
10_1101-2021_01_07_425794	207	9	4.0	4.0	CD
10_1101-2021_01_07_425794	207	10	International	international	JJ
10_1101-2021_01_07_425794	207	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	207	12	available	available	JJ
10_1101-2021_01_07_425794	207	13	under	under	IN
10_1101-2021_01_07_425794	207	14	a	a	DT
10_1101-2021_01_07_425794	207	15	(	(	-LRB-
10_1101-2021_01_07_425794	207	16	which	which	WDT
10_1101-2021_01_07_425794	207	17	was	be	VBD
10_1101-2021_01_07_425794	207	18	not	not	RB
10_1101-2021_01_07_425794	207	19	certified	certify	VBN
10_1101-2021_01_07_425794	207	20	by	by	IN
10_1101-2021_01_07_425794	207	21	peer	peer	NN
10_1101-2021_01_07_425794	207	22	review	review	NN
10_1101-2021_01_07_425794	207	23	)	)	-RRB-
10_1101-2021_01_07_425794	207	24	is	be	VBZ
10_1101-2021_01_07_425794	207	25	the	the	DT
10_1101-2021_01_07_425794	207	26	author	author	NN
10_1101-2021_01_07_425794	207	27	/	/	SYM
10_1101-2021_01_07_425794	207	28	funder	funder	NN
10_1101-2021_01_07_425794	207	29	,	,	,
10_1101-2021_01_07_425794	207	30	who	who	WP
10_1101-2021_01_07_425794	207	31	has	have	VBZ
10_1101-2021_01_07_425794	207	32	granted	grant	VBN
10_1101-2021_01_07_425794	207	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	207	34	a	a	DT
10_1101-2021_01_07_425794	207	35	license	license	NN
10_1101-2021_01_07_425794	207	36	to	to	TO
10_1101-2021_01_07_425794	207	37	display	display	VB
10_1101-2021_01_07_425794	207	38	the	the	DT
10_1101-2021_01_07_425794	207	39	preprint	preprint	NN
10_1101-2021_01_07_425794	207	40	in	in	IN
10_1101-2021_01_07_425794	207	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	207	42	.	.	.
10_1101-2021_01_07_425794	208	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	208	2	is	be	VBZ
10_1101-2021_01_07_425794	208	3	The	the	DT
10_1101-2021_01_07_425794	208	4	copyright	copyright	NN
10_1101-2021_01_07_425794	208	5	holder	holder	NN
10_1101-2021_01_07_425794	208	6	for	for	IN
10_1101-2021_01_07_425794	208	7	this	this	DT
10_1101-2021_01_07_425794	208	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	208	9	version	version	NN
10_1101-2021_01_07_425794	208	10	posted	post	VBD
10_1101-2021_01_07_425794	208	11	January	January	NNP
10_1101-2021_01_07_425794	208	12	8	8	CD
10_1101-2021_01_07_425794	208	13	,	,	,
10_1101-2021_01_07_425794	208	14	2021	2021	CD
10_1101-2021_01_07_425794	208	15	.	.	.
10_1101-2021_01_07_425794	208	16	;	;	:
10_1101-2021_01_07_425794	208	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	208	18	:	:	:
10_1101-2021_01_07_425794	208	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	208	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	208	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	208	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	CD
10_1101-2021_01_07_425794	208	23	Key	Key	NNP
10_1101-2021_01_07_425794	208	24	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	208	25	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	208	26	-	-	HYPH
10_1101-2021_01_07_425794	208	27	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	208	28	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	208	29	-	-	HYPH
10_1101-2021_01_07_425794	208	30	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	208	31	All	all	DT
10_1101-2021_01_07_425794	208	32	genes	gene	NNS
10_1101-2021_01_07_425794	208	33	after	after	IN
10_1101-2021_01_07_425794	208	34	filtering	filter	VBG
10_1101-2021_01_07_425794	208	35	Common	common	JJ
10_1101-2021_01_07_425794	208	36	genes	gene	NNS
10_1101-2021_01_07_425794	208	37	after	after	IN
10_1101-2021_01_07_425794	208	38	filtering	filter	VBG
10_1101-2021_01_07_425794	208	39	0.70	0.70	CD
10_1101-2021_01_07_425794	208	40	0.75	0.75	CD
10_1101-2021_01_07_425794	208	41	0.80	0.80	CD
10_1101-2021_01_07_425794	208	42	0.85	0.85	CD
10_1101-2021_01_07_425794	208	43	0.70	0.70	CD
10_1101-2021_01_07_425794	208	44	0.75	0.75	CD
10_1101-2021_01_07_425794	208	45	0.80	0.80	CD
10_1101-2021_01_07_425794	208	46	0.85	0.85	CD
10_1101-2021_01_07_425794	208	47	A	A	NNP
10_1101-2021_01_07_425794	208	48	B	b	NN
10_1101-2021_01_07_425794	208	49	C	c	NN
10_1101-2021_01_07_425794	208	50	D	d	NN
10_1101-2021_01_07_425794	208	51	A	a	NN
10_1101-2021_01_07_425794	208	52	B	b	NN
10_1101-2021_01_07_425794	208	53	C	c	NN
10_1101-2021_01_07_425794	208	54	D	d	NN
10_1101-2021_01_07_425794	208	55	0.70	0.70	CD
10_1101-2021_01_07_425794	208	56	0.75	0.75	CD
10_1101-2021_01_07_425794	208	57	0.80	0.80	CD
10_1101-2021_01_07_425794	208	58	0.85	0.85	CD
10_1101-2021_01_07_425794	208	59	Li	Li	NNP
10_1101-2021_01_07_425794	208	60	br	br	IN
10_1101-2021_01_07_425794	208	61	ar	ar	NNP
10_1101-2021_01_07_425794	208	62	y	y	NNP
10_1101-2021_01_07_425794	208	63	si	si	NN
10_1101-2021_01_07_425794	208	64	ze	ze	UH
10_1101-2021_01_07_425794	208	65	no	no	UH
10_1101-2021_01_07_425794	208	66	rm	rm	NNP
10_1101-2021_01_07_425794	208	67	al	al	NNP
10_1101-2021_01_07_425794	208	68	iz	iz	NNP
10_1101-2021_01_07_425794	208	69	at	at	IN
10_1101-2021_01_07_425794	208	70	io	io	NNP
10_1101-2021_01_07_425794	208	71	n	n	NNP
10_1101-2021_01_07_425794	208	72	Q	Q	NNP
10_1101-2021_01_07_425794	208	73	ua	ua	PRP
10_1101-2021_01_07_425794	208	74	nt	nt	RB
10_1101-2021_01_07_425794	208	75	ile	ile	VB
10_1101-2021_01_07_425794	208	76	no	no	UH
10_1101-2021_01_07_425794	208	77	rm	rm	NNP
10_1101-2021_01_07_425794	208	78	al	al	NNP
10_1101-2021_01_07_425794	208	79	iz	iz	NNP
10_1101-2021_01_07_425794	208	80	at	at	IN
10_1101-2021_01_07_425794	208	81	io	io	NNP
10_1101-2021_01_07_425794	208	82	n	n	CC
10_1101-2021_01_07_425794	208	83	TM	TM	NNP
10_1101-2021_01_07_425794	208	84	M	M	NNP
10_1101-2021_01_07_425794	208	85	no	no	UH
10_1101-2021_01_07_425794	208	86	rm	rm	NNP
10_1101-2021_01_07_425794	208	87	al	al	NNP
10_1101-2021_01_07_425794	208	88	iz	iz	NNP
10_1101-2021_01_07_425794	208	89	at	at	IN
10_1101-2021_01_07_425794	208	90	io	io	NNP
10_1101-2021_01_07_425794	208	91	n	n	CC
10_1101-2021_01_07_425794	208	92	0.70	0.70	CD
10_1101-2021_01_07_425794	208	93	0.75	0.75	CD
10_1101-2021_01_07_425794	208	94	0.80	0.80	CD
10_1101-2021_01_07_425794	208	95	0.85	0.85	CD
10_1101-2021_01_07_425794	208	96	0.70	0.70	CD
10_1101-2021_01_07_425794	208	97	0.75	0.75	CD
10_1101-2021_01_07_425794	208	98	0.80	0.80	CD
10_1101-2021_01_07_425794	208	99	0.85	0.85	CD
10_1101-2021_01_07_425794	208	100	0.70	0.70	CD
10_1101-2021_01_07_425794	208	101	0.75	0.75	CD
10_1101-2021_01_07_425794	208	102	0.80	0.80	CD
10_1101-2021_01_07_425794	208	103	0.85	0.85	CD
10_1101-2021_01_07_425794	208	104	C	C	NNP
10_1101-2021_01_07_425794	208	105	or	or	CC
10_1101-2021_01_07_425794	208	106	re	re	VB
10_1101-2021_01_07_425794	208	107	la	la	NNP
10_1101-2021_01_07_425794	208	108	tio	tio	NNP
10_1101-2021_01_07_425794	208	109	n	n	NNP
10_1101-2021_01_07_425794	208	110	co	co	NNP
10_1101-2021_01_07_425794	208	111	ef	ef	NNP
10_1101-2021_01_07_425794	208	112	fic	fic	NNP
10_1101-2021_01_07_425794	208	113	ie	ie	NNP
10_1101-2021_01_07_425794	208	114	nt	nt	RB
10_1101-2021_01_07_425794	208	115	C	C	NNP
10_1101-2021_01_07_425794	208	116	or	or	CC
10_1101-2021_01_07_425794	208	117	re	re	VB
10_1101-2021_01_07_425794	208	118	la	la	NNP
10_1101-2021_01_07_425794	208	119	tio	tio	NNP
10_1101-2021_01_07_425794	208	120	n	n	NNP
10_1101-2021_01_07_425794	208	121	co	co	NNP
10_1101-2021_01_07_425794	208	122	ef	ef	NNP
10_1101-2021_01_07_425794	208	123	fic	fic	NNP
10_1101-2021_01_07_425794	208	124	ie	ie	NNP
10_1101-2021_01_07_425794	208	125	nt	nt	RB
10_1101-2021_01_07_425794	208	126	C	C	NNP
10_1101-2021_01_07_425794	208	127	or	or	CC
10_1101-2021_01_07_425794	208	128	re	re	VB
10_1101-2021_01_07_425794	208	129	la	la	NNP
10_1101-2021_01_07_425794	208	130	tio	tio	NNP
10_1101-2021_01_07_425794	208	131	n	n	NNP
10_1101-2021_01_07_425794	208	132	co	co	NNP
10_1101-2021_01_07_425794	208	133	ef	ef	NNP
10_1101-2021_01_07_425794	208	134	fic	fic	NNP
10_1101-2021_01_07_425794	208	135	ie	ie	NNP
10_1101-2021_01_07_425794	208	136	nt	nt	NNP
10_1101-2021_01_07_425794	208	137	Figure	Figure	NNP
10_1101-2021_01_07_425794	208	138	6	6	CD
10_1101-2021_01_07_425794	208	139	:	:	:
10_1101-2021_01_07_425794	208	140	Validation	validation	NN
10_1101-2021_01_07_425794	208	141	of	of	IN
10_1101-2021_01_07_425794	208	142	RNA	RNA	NNP
10_1101-2021_01_07_425794	208	143	-	-	HYPH
10_1101-2021_01_07_425794	208	144	seq	seq	NN
10_1101-2021_01_07_425794	208	145	against	against	IN
10_1101-2021_01_07_425794	208	146	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	208	147	RT	RT	NNP
10_1101-2021_01_07_425794	208	148	-	-	HYPH
10_1101-2021_01_07_425794	208	149	PCR	PCR	NNP
10_1101-2021_01_07_425794	208	150	dataset	dataset	NN
10_1101-2021_01_07_425794	208	151	.	.	.
10_1101-2021_01_07_425794	209	1	Shown	show	VBN
10_1101-2021_01_07_425794	209	2	are	be	VBP
10_1101-2021_01_07_425794	209	3	Pearson	Pearson	NNP
10_1101-2021_01_07_425794	209	4	correlation	correlation	NN
10_1101-2021_01_07_425794	209	5	coefficients	coefficient	NNS
10_1101-2021_01_07_425794	209	6	computed	compute	VBD
10_1101-2021_01_07_425794	209	7	from	from	IN
10_1101-2021_01_07_425794	209	8	comparing	compare	VBG
10_1101-2021_01_07_425794	209	9	RNA	RNA	NNP
10_1101-2021_01_07_425794	209	10	-	-	HYPH
10_1101-2021_01_07_425794	209	11	seq	seq	NN
10_1101-2021_01_07_425794	209	12	data	datum	NNS
10_1101-2021_01_07_425794	209	13	against	against	IN
10_1101-2021_01_07_425794	209	14	RT	RT	NNP
10_1101-2021_01_07_425794	209	15	-	-	HYPH
10_1101-2021_01_07_425794	209	16	PCR	PCR	NNP
10_1101-2021_01_07_425794	209	17	data	datum	NNS
10_1101-2021_01_07_425794	209	18	,	,	,
10_1101-2021_01_07_425794	209	19	using	use	VBG
10_1101-2021_01_07_425794	209	20	the	the	DT
10_1101-2021_01_07_425794	209	21	RT	RT	NNP
10_1101-2021_01_07_425794	209	22	-	-	HYPH
10_1101-2021_01_07_425794	209	23	PCR	PCR	NNP
10_1101-2021_01_07_425794	209	24	genes	gene	NNS
10_1101-2021_01_07_425794	209	25	matched	match	VBN
10_1101-2021_01_07_425794	209	26	with	with	IN
10_1101-2021_01_07_425794	209	27	each	each	DT
10_1101-2021_01_07_425794	209	28	individual	individual	JJ
10_1101-2021_01_07_425794	209	29	annotation	annotation	NN
10_1101-2021_01_07_425794	209	30	(	(	-LRB-
10_1101-2021_01_07_425794	209	31	left	leave	VBN
10_1101-2021_01_07_425794	209	32	column	column	NN
10_1101-2021_01_07_425794	209	33	)	)	-RRB-
10_1101-2021_01_07_425794	209	34	or	or	CC
10_1101-2021_01_07_425794	209	35	matched	match	VBN
10_1101-2021_01_07_425794	209	36	with	with	IN
10_1101-2021_01_07_425794	209	37	all	all	DT
10_1101-2021_01_07_425794	209	38	three	three	CD
10_1101-2021_01_07_425794	209	39	annotations	annotation	NNS
10_1101-2021_01_07_425794	209	40	(	(	-LRB-
10_1101-2021_01_07_425794	209	41	right	right	JJ
10_1101-2021_01_07_425794	209	42	column	column	NN
10_1101-2021_01_07_425794	209	43	)	)	-RRB-
10_1101-2021_01_07_425794	209	44	.	.	.
10_1101-2021_01_07_425794	210	1	The	the	DT
10_1101-2021_01_07_425794	210	2	rows	row	NNS
10_1101-2021_01_07_425794	210	3	represent	represent	VBP
10_1101-2021_01_07_425794	210	4	the	the	DT
10_1101-2021_01_07_425794	210	5	different	different	JJ
10_1101-2021_01_07_425794	210	6	RNA	RNA	NNP
10_1101-2021_01_07_425794	210	7	-	-	HYPH
10_1101-2021_01_07_425794	210	8	seq	seq	NN
10_1101-2021_01_07_425794	210	9	normalization	normalization	NN
10_1101-2021_01_07_425794	210	10	methods	method	NNS
10_1101-2021_01_07_425794	210	11	used	use	VBN
10_1101-2021_01_07_425794	210	12	.	.	.
10_1101-2021_01_07_425794	211	1	Lowly	Lowly	NNP
10_1101-2021_01_07_425794	211	2	expressed	express	VBD
10_1101-2021_01_07_425794	211	3	genes	gene	NNS
10_1101-2021_01_07_425794	211	4	in	in	IN
10_1101-2021_01_07_425794	211	5	the	the	DT
10_1101-2021_01_07_425794	211	6	RNA	RNA	NNP
10_1101-2021_01_07_425794	211	7	-	-	HYPH
10_1101-2021_01_07_425794	211	8	seq	seq	NN
10_1101-2021_01_07_425794	211	9	data	datum	NNS
10_1101-2021_01_07_425794	211	10	were	be	VBD
10_1101-2021_01_07_425794	211	11	filtered	filter	VBN
10_1101-2021_01_07_425794	211	12	out	out	RP
10_1101-2021_01_07_425794	211	13	before	before	IN
10_1101-2021_01_07_425794	211	14	the	the	DT
10_1101-2021_01_07_425794	211	15	correlation	correlation	NN
10_1101-2021_01_07_425794	211	16	analysis	analysis	NN
10_1101-2021_01_07_425794	211	17	was	be	VBD
10_1101-2021_01_07_425794	211	18	performed	perform	VBN
10_1101-2021_01_07_425794	211	19	.	.	.
10_1101-2021_01_07_425794	212	1	The	the	DT
10_1101-2021_01_07_425794	212	2	RNA	RNA	NNP
10_1101-2021_01_07_425794	212	3	-	-	HYPH
10_1101-2021_01_07_425794	212	4	seq	seq	NN
10_1101-2021_01_07_425794	212	5	data	datum	NNS
10_1101-2021_01_07_425794	212	6	generated	generate	VBN
10_1101-2021_01_07_425794	212	7	from	from	IN
10_1101-2021_01_07_425794	212	8	each	each	DT
10_1101-2021_01_07_425794	212	9	annotation	annotation	NN
10_1101-2021_01_07_425794	212	10	were	be	VBD
10_1101-2021_01_07_425794	212	11	filtered	filter	VBN
10_1101-2021_01_07_425794	212	12	to	to	TO
10_1101-2021_01_07_425794	212	13	remove	remove	VB
10_1101-2021_01_07_425794	212	14	lowly	lowly	RB
10_1101-2021_01_07_425794	212	15	expressed	express	VBN
10_1101-2021_01_07_425794	212	16	genes	gene	NNS
10_1101-2021_01_07_425794	212	17	before	before	IN
10_1101-2021_01_07_425794	212	18	being	be	VBG
10_1101-2021_01_07_425794	212	19	compared	compare	VBN
10_1101-2021_01_07_425794	212	20	to	to	IN
10_1101-2021_01_07_425794	212	21	the	the	DT
10_1101-2021_01_07_425794	212	22	RT	RT	NNP
10_1101-2021_01_07_425794	212	23	-	-	HYPH
10_1101-2021_01_07_425794	212	24	PCR	PCR	NNP
10_1101-2021_01_07_425794	212	25	data	datum	NNS
10_1101-2021_01_07_425794	212	26	.	.	.
10_1101-2021_01_07_425794	213	1	Numbers	number	NNS
10_1101-2021_01_07_425794	213	2	of	of	IN
10_1101-2021_01_07_425794	213	3	matched	match	VBN
10_1101-2021_01_07_425794	213	4	genes	gene	NNS
10_1101-2021_01_07_425794	213	5	between	between	IN
10_1101-2021_01_07_425794	213	6	the	the	DT
10_1101-2021_01_07_425794	213	7	RT	RT	NNP
10_1101-2021_01_07_425794	213	8	-	-	HYPH
10_1101-2021_01_07_425794	213	9	PCR	PCR	NNP
10_1101-2021_01_07_425794	213	10	data	datum	NNS
10_1101-2021_01_07_425794	213	11	and	and	CC
10_1101-2021_01_07_425794	213	12	the	the	DT
10_1101-2021_01_07_425794	213	13	RNA	RNA	NNP
10_1101-2021_01_07_425794	213	14	-	-	HYPH
10_1101-2021_01_07_425794	213	15	seq	seq	NN
10_1101-2021_01_07_425794	213	16	data	datum	NNS
10_1101-2021_01_07_425794	213	17	were	be	VBD
10_1101-2021_01_07_425794	213	18	856	856	CD
10_1101-2021_01_07_425794	213	19	,	,	,
10_1101-2021_01_07_425794	213	20	901	901	CD
10_1101-2021_01_07_425794	213	21	and	and	CC
10_1101-2021_01_07_425794	213	22	901	901	CD
10_1101-2021_01_07_425794	213	23	for	for	IN
10_1101-2021_01_07_425794	213	24	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	213	25	,	,	,
10_1101-2021_01_07_425794	213	26	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	213	27	-	-	HYPH
10_1101-2021_01_07_425794	213	28	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	213	29	and	and	CC
10_1101-2021_01_07_425794	213	30	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	213	31	-	-	HYPH
10_1101-2021_01_07_425794	213	32	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	213	33	,	,	,
10_1101-2021_01_07_425794	213	34	respectively	respectively	RB
10_1101-2021_01_07_425794	213	35	.	.	.
10_1101-2021_01_07_425794	214	1	846	846	CD
10_1101-2021_01_07_425794	214	2	RT	RT	NNP
10_1101-2021_01_07_425794	214	3	-	-	HYPH
10_1101-2021_01_07_425794	214	4	PCR	PCR	NNP
10_1101-2021_01_07_425794	214	5	genes	gene	NNS
10_1101-2021_01_07_425794	214	6	were	be	VBD
10_1101-2021_01_07_425794	214	7	found	find	VBN
10_1101-2021_01_07_425794	214	8	to	to	TO
10_1101-2021_01_07_425794	214	9	be	be	VB
10_1101-2021_01_07_425794	214	10	common	common	JJ
10_1101-2021_01_07_425794	214	11	to	to	IN
10_1101-2021_01_07_425794	214	12	all	all	PDT
10_1101-2021_01_07_425794	214	13	the	the	DT
10_1101-2021_01_07_425794	214	14	three	three	CD
10_1101-2021_01_07_425794	214	15	annotations	annotation	NNS
10_1101-2021_01_07_425794	214	16	.	.	.
10_1101-2021_01_07_425794	215	1	The	the	DT
10_1101-2021_01_07_425794	215	2	raw	raw	JJ
10_1101-2021_01_07_425794	215	3	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	215	4	RT	RT	NNP
10_1101-2021_01_07_425794	215	5	-	-	HYPH
10_1101-2021_01_07_425794	215	6	PCR	PCR	NNP
10_1101-2021_01_07_425794	215	7	data	datum	NNS
10_1101-2021_01_07_425794	215	8	were	be	VBD
10_1101-2021_01_07_425794	215	9	log2-	log2-	CD
10_1101-2021_01_07_425794	215	10	16	16	CD
10_1101-2021_01_07_425794	215	11	.CC	.CC	:
10_1101-2021_01_07_425794	215	12	-	-	HYPH
10_1101-2021_01_07_425794	215	13	BY	by	IN
10_1101-2021_01_07_425794	215	14	-	-	HYPH
10_1101-2021_01_07_425794	215	15	NC	NC	NNP
10_1101-2021_01_07_425794	215	16	-	-	HYPH
10_1101-2021_01_07_425794	215	17	ND	ND	NNP
10_1101-2021_01_07_425794	215	18	4.0	4.0	CD
10_1101-2021_01_07_425794	215	19	International	international	JJ
10_1101-2021_01_07_425794	215	20	licensemade	licensemade	NN
10_1101-2021_01_07_425794	215	21	available	available	JJ
10_1101-2021_01_07_425794	215	22	under	under	IN
10_1101-2021_01_07_425794	215	23	a	a	DT
10_1101-2021_01_07_425794	215	24	(	(	-LRB-
10_1101-2021_01_07_425794	215	25	which	which	WDT
10_1101-2021_01_07_425794	215	26	was	be	VBD
10_1101-2021_01_07_425794	215	27	not	not	RB
10_1101-2021_01_07_425794	215	28	certified	certify	VBN
10_1101-2021_01_07_425794	215	29	by	by	IN
10_1101-2021_01_07_425794	215	30	peer	peer	NN
10_1101-2021_01_07_425794	215	31	review	review	NN
10_1101-2021_01_07_425794	215	32	)	)	-RRB-
10_1101-2021_01_07_425794	215	33	is	be	VBZ
10_1101-2021_01_07_425794	215	34	the	the	DT
10_1101-2021_01_07_425794	215	35	author	author	NN
10_1101-2021_01_07_425794	215	36	/	/	SYM
10_1101-2021_01_07_425794	215	37	funder	funder	NN
10_1101-2021_01_07_425794	215	38	,	,	,
10_1101-2021_01_07_425794	215	39	who	who	WP
10_1101-2021_01_07_425794	215	40	has	have	VBZ
10_1101-2021_01_07_425794	215	41	granted	grant	VBN
10_1101-2021_01_07_425794	215	42	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	215	43	a	a	DT
10_1101-2021_01_07_425794	215	44	license	license	NN
10_1101-2021_01_07_425794	215	45	to	to	TO
10_1101-2021_01_07_425794	215	46	display	display	VB
10_1101-2021_01_07_425794	215	47	the	the	DT
10_1101-2021_01_07_425794	215	48	preprint	preprint	NN
10_1101-2021_01_07_425794	215	49	in	in	IN
10_1101-2021_01_07_425794	215	50	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	215	51	.	.	.
10_1101-2021_01_07_425794	216	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	216	2	is	be	VBZ
10_1101-2021_01_07_425794	216	3	The	the	DT
10_1101-2021_01_07_425794	216	4	copyright	copyright	NN
10_1101-2021_01_07_425794	216	5	holder	holder	NN
10_1101-2021_01_07_425794	216	6	for	for	IN
10_1101-2021_01_07_425794	216	7	this	this	DT
10_1101-2021_01_07_425794	216	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	216	9	version	version	NN
10_1101-2021_01_07_425794	216	10	posted	post	VBD
10_1101-2021_01_07_425794	216	11	January	January	NNP
10_1101-2021_01_07_425794	216	12	8	8	CD
10_1101-2021_01_07_425794	216	13	,	,	,
10_1101-2021_01_07_425794	216	14	2021	2021	CD
10_1101-2021_01_07_425794	216	15	.	.	.
10_1101-2021_01_07_425794	216	16	;	;	:
10_1101-2021_01_07_425794	216	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	216	18	:	:	:
10_1101-2021_01_07_425794	216	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	216	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	216	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	216	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	216	23	transformed	transform	VBN
10_1101-2021_01_07_425794	216	24	before	before	IN
10_1101-2021_01_07_425794	216	25	comparing	compare	VBG
10_1101-2021_01_07_425794	216	26	to	to	IN
10_1101-2021_01_07_425794	216	27	the	the	DT
10_1101-2021_01_07_425794	216	28	filtered	filter	VBN
10_1101-2021_01_07_425794	216	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	216	30	-	-	HYPH
10_1101-2021_01_07_425794	216	31	seq	seq	NN
10_1101-2021_01_07_425794	216	32	data	datum	NNS
10_1101-2021_01_07_425794	216	33	.	.	.
10_1101-2021_01_07_425794	217	1	Pearson	Pearson	NNP
10_1101-2021_01_07_425794	217	2	correlation	correlation	NN
10_1101-2021_01_07_425794	217	3	analysis	analysis	NN
10_1101-2021_01_07_425794	217	4	of	of	IN
10_1101-2021_01_07_425794	217	5	the	the	DT
10_1101-2021_01_07_425794	217	6	RNA	RNA	NNP
10_1101-2021_01_07_425794	217	7	-	-	HYPH
10_1101-2021_01_07_425794	217	8	seq	seq	NN
10_1101-2021_01_07_425794	217	9	gene	gene	NN
10_1101-2021_01_07_425794	217	10	expression	expression	NN
10_1101-2021_01_07_425794	217	11	(	(	-LRB-
10_1101-2021_01_07_425794	217	12	log2FPKM	log2fpkm	CD
10_1101-2021_01_07_425794	217	13	values	value	NNS
10_1101-2021_01_07_425794	217	14	)	)	-RRB-
10_1101-2021_01_07_425794	217	15	and	and	CC
10_1101-2021_01_07_425794	217	16	RT	RT	NNP
10_1101-2021_01_07_425794	217	17	-	-	HYPH
10_1101-2021_01_07_425794	217	18	PCR	PCR	NNP
10_1101-2021_01_07_425794	217	19	gene	gene	NN
10_1101-2021_01_07_425794	217	20	expression	expression	NN
10_1101-2021_01_07_425794	217	21	(	(	-LRB-
10_1101-2021_01_07_425794	217	22	log2	log2	NN
10_1101-2021_01_07_425794	217	23	values	value	NNS
10_1101-2021_01_07_425794	217	24	)	)	-RRB-
10_1101-2021_01_07_425794	217	25	from	from	IN
10_1101-2021_01_07_425794	217	26	using	use	VBG
10_1101-2021_01_07_425794	217	27	the	the	DT
10_1101-2021_01_07_425794	217	28	RT	RT	NNP
10_1101-2021_01_07_425794	217	29	-	-	HYPH
10_1101-2021_01_07_425794	217	30	PCR	PCR	NNP
10_1101-2021_01_07_425794	217	31	genes	gene	NNS
10_1101-2021_01_07_425794	217	32	matched	match	VBN
10_1101-2021_01_07_425794	217	33	with	with	IN
10_1101-2021_01_07_425794	217	34	each	each	DT
10_1101-2021_01_07_425794	217	35	individual	individual	JJ
10_1101-2021_01_07_425794	217	36	annotation	annotation	NN
10_1101-2021_01_07_425794	217	37	showed	show	VBD
10_1101-2021_01_07_425794	217	38	that	that	IN
10_1101-2021_01_07_425794	217	39	the	the	DT
10_1101-2021_01_07_425794	217	40	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	217	41	-	-	HYPH
10_1101-2021_01_07_425794	217	42	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	217	43	annotation	annotation	NN
10_1101-2021_01_07_425794	217	44	constantly	constantly	RB
10_1101-2021_01_07_425794	217	45	yielded	yield	VBD
10_1101-2021_01_07_425794	217	46	a	a	DT
10_1101-2021_01_07_425794	217	47	higher	high	JJR
10_1101-2021_01_07_425794	217	48	correlation	correlation	NN
10_1101-2021_01_07_425794	217	49	than	than	IN
10_1101-2021_01_07_425794	217	50	the	the	DT
10_1101-2021_01_07_425794	217	51	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	217	52	and	and	CC
10_1101-2021_01_07_425794	217	53	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	217	54	-	-	HYPH
10_1101-2021_01_07_425794	217	55	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	217	56	annotations	annotation	NNS
10_1101-2021_01_07_425794	217	57	,	,	,
10_1101-2021_01_07_425794	217	58	across	across	IN
10_1101-2021_01_07_425794	217	59	all	all	PDT
10_1101-2021_01_07_425794	217	60	the	the	DT
10_1101-2021_01_07_425794	217	61	samples	sample	NNS
10_1101-2021_01_07_425794	217	62	and	and	CC
10_1101-2021_01_07_425794	217	63	the	the	DT
10_1101-2021_01_07_425794	217	64	three	three	CD
10_1101-2021_01_07_425794	217	65	different	different	JJ
10_1101-2021_01_07_425794	217	66	normalization	normalization	NN
10_1101-2021_01_07_425794	217	67	methods	method	NNS
10_1101-2021_01_07_425794	217	68	(	(	-LRB-
10_1101-2021_01_07_425794	217	69	left	left	JJ
10_1101-2021_01_07_425794	217	70	panel	panel	NN
10_1101-2021_01_07_425794	217	71	in	in	IN
10_1101-2021_01_07_425794	217	72	Figure	Figure	NNP
10_1101-2021_01_07_425794	217	73	6	6	CD
10_1101-2021_01_07_425794	217	74	)	)	-RRB-
10_1101-2021_01_07_425794	217	75	.	.	.
10_1101-2021_01_07_425794	218	1	The	the	DT
10_1101-2021_01_07_425794	218	2	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	218	3	annotation	annotation	NN
10_1101-2021_01_07_425794	218	4	was	be	VBD
10_1101-2021_01_07_425794	218	5	found	find	VBN
10_1101-2021_01_07_425794	218	6	to	to	TO
10_1101-2021_01_07_425794	218	7	produce	produce	VB
10_1101-2021_01_07_425794	218	8	the	the	DT
10_1101-2021_01_07_425794	218	9	worst	bad	JJS
10_1101-2021_01_07_425794	218	10	correlation	correlation	NN
10_1101-2021_01_07_425794	218	11	in	in	IN
10_1101-2021_01_07_425794	218	12	all	all	PDT
10_1101-2021_01_07_425794	218	13	these	these	DT
10_1101-2021_01_07_425794	218	14	comparisons	comparison	NNS
10_1101-2021_01_07_425794	218	15	.	.	.
10_1101-2021_01_07_425794	219	1	When	when	WRB
10_1101-2021_01_07_425794	219	2	using	use	VBG
10_1101-2021_01_07_425794	219	3	the	the	DT
10_1101-2021_01_07_425794	219	4	RT	RT	NNP
10_1101-2021_01_07_425794	219	5	-	-	HYPH
10_1101-2021_01_07_425794	219	6	PCR	PCR	NNP
10_1101-2021_01_07_425794	219	7	genes	gene	NNS
10_1101-2021_01_07_425794	219	8	matched	match	VBN
10_1101-2021_01_07_425794	219	9	with	with	IN
10_1101-2021_01_07_425794	219	10	all	all	DT
10_1101-2021_01_07_425794	219	11	three	three	CD
10_1101-2021_01_07_425794	219	12	annotations	annotation	NNS
10_1101-2021_01_07_425794	219	13	for	for	IN
10_1101-2021_01_07_425794	219	14	comparison	comparison	NN
10_1101-2021_01_07_425794	219	15	,	,	,
10_1101-2021_01_07_425794	219	16	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	219	17	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	219	18	was	be	VBD
10_1101-2021_01_07_425794	219	19	again	again	RB
10_1101-2021_01_07_425794	219	20	found	find	VBN
10_1101-2021_01_07_425794	219	21	to	to	TO
10_1101-2021_01_07_425794	219	22	yield	yield	VB
10_1101-2021_01_07_425794	219	23	the	the	DT
10_1101-2021_01_07_425794	219	24	highest	high	JJS
10_1101-2021_01_07_425794	219	25	correlation	correlation	NN
10_1101-2021_01_07_425794	219	26	(	(	-LRB-
10_1101-2021_01_07_425794	219	27	right	right	JJ
10_1101-2021_01_07_425794	219	28	panel	panel	NN
10_1101-2021_01_07_425794	219	29	in	in	IN
10_1101-2021_01_07_425794	219	30	Figure	Figure	NNP
10_1101-2021_01_07_425794	219	31	6	6	CD
10_1101-2021_01_07_425794	219	32	)	)	-RRB-
10_1101-2021_01_07_425794	219	33	.	.	.
10_1101-2021_01_07_425794	220	1	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	220	2	and	and	CC
10_1101-2021_01_07_425794	220	3	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	220	4	-	-	HYPH
10_1101-2021_01_07_425794	220	5	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	220	6	were	be	VBD
10_1101-2021_01_07_425794	220	7	found	find	VBN
10_1101-2021_01_07_425794	220	8	to	to	TO
10_1101-2021_01_07_425794	220	9	produce	produce	VB
10_1101-2021_01_07_425794	220	10	similar	similar	JJ
10_1101-2021_01_07_425794	220	11	correlation	correlation	NN
10_1101-2021_01_07_425794	220	12	coefficients	coefficient	NNS
10_1101-2021_01_07_425794	220	13	.	.	.
10_1101-2021_01_07_425794	221	1	Taken	take	VBN
10_1101-2021_01_07_425794	221	2	together	together	RB
10_1101-2021_01_07_425794	221	3	,	,	,
10_1101-2021_01_07_425794	221	4	results	result	NNS
10_1101-2021_01_07_425794	221	5	from	from	IN
10_1101-2021_01_07_425794	221	6	this	this	DT
10_1101-2021_01_07_425794	221	7	evaluation	evaluation	NN
10_1101-2021_01_07_425794	221	8	showed	show	VBD
10_1101-2021_01_07_425794	221	9	that	that	IN
10_1101-2021_01_07_425794	221	10	the	the	DT
10_1101-2021_01_07_425794	221	11	use	use	NN
10_1101-2021_01_07_425794	221	12	of	of	IN
10_1101-2021_01_07_425794	221	13	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	221	14	-	-	HYPH
10_1101-2021_01_07_425794	221	15	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	221	16	annotation	annotation	NN
10_1101-2021_01_07_425794	221	17	led	lead	VBD
10_1101-2021_01_07_425794	221	18	to	to	IN
10_1101-2021_01_07_425794	221	19	a	a	DT
10_1101-2021_01_07_425794	221	20	better	well	JJR
10_1101-2021_01_07_425794	221	21	concordance	concordance	NN
10_1101-2021_01_07_425794	221	22	in	in	IN
10_1101-2021_01_07_425794	221	23	gene	gene	NN
10_1101-2021_01_07_425794	221	24	expression	expression	NN
10_1101-2021_01_07_425794	221	25	between	between	IN
10_1101-2021_01_07_425794	221	26	the	the	DT
10_1101-2021_01_07_425794	221	27	RNA	RNA	NNP
10_1101-2021_01_07_425794	221	28	-	-	HYPH
10_1101-2021_01_07_425794	221	29	seq	seq	NN
10_1101-2021_01_07_425794	221	30	data	datum	NNS
10_1101-2021_01_07_425794	221	31	and	and	CC
10_1101-2021_01_07_425794	221	32	the	the	DT
10_1101-2021_01_07_425794	221	33	RT-	RT-	NNP
10_1101-2021_01_07_425794	221	34	PCR	PCR	NNP
10_1101-2021_01_07_425794	221	35	data	datum	NNS
10_1101-2021_01_07_425794	221	36	,	,	,
10_1101-2021_01_07_425794	221	37	compared	compare	VBN
10_1101-2021_01_07_425794	221	38	to	to	IN
10_1101-2021_01_07_425794	221	39	the	the	DT
10_1101-2021_01_07_425794	221	40	use	use	NN
10_1101-2021_01_07_425794	221	41	of	of	IN
10_1101-2021_01_07_425794	221	42	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	221	43	and	and	CC
10_1101-2021_01_07_425794	221	44	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	221	45	-	-	HYPH
10_1101-2021_01_07_425794	221	46	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	221	47	annotations	annotation	NNS
10_1101-2021_01_07_425794	221	48	.	.	.
10_1101-2021_01_07_425794	222	1	3.7	3.7	CD
10_1101-2021_01_07_425794	222	2	Validation	validation	NN
10_1101-2021_01_07_425794	222	3	against	against	IN
10_1101-2021_01_07_425794	222	4	microarray	microarray	JJ
10_1101-2021_01_07_425794	222	5	data	datum	NNS
10_1101-2021_01_07_425794	222	6	An	an	DT
10_1101-2021_01_07_425794	222	7	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	222	8	BeadChip	BeadChip	NNP
10_1101-2021_01_07_425794	222	9	microarray	microarray	NN
10_1101-2021_01_07_425794	222	10	dataset	dataset	NN
10_1101-2021_01_07_425794	222	11	,	,	,
10_1101-2021_01_07_425794	222	12	which	which	WDT
10_1101-2021_01_07_425794	222	13	was	be	VBD
10_1101-2021_01_07_425794	222	14	generated	generate	VBN
10_1101-2021_01_07_425794	222	15	by	by	IN
10_1101-2021_01_07_425794	222	16	the	the	DT
10_1101-2021_01_07_425794	222	17	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	222	18	-	-	:
10_1101-2021_01_07_425794	222	19	I	-PRON-	PRP
10_1101-2021_01_07_425794	222	20	project	project	VBP
10_1101-2021_01_07_425794	222	21	[	[	-LRB-
10_1101-2021_01_07_425794	222	22	15	15	CD
10_1101-2021_01_07_425794	222	23	]	]	-RRB-
10_1101-2021_01_07_425794	222	24	for	for	IN
10_1101-2021_01_07_425794	222	25	the	the	DT
10_1101-2021_01_07_425794	222	26	same	same	JJ
10_1101-2021_01_07_425794	222	27	samples	sample	NNS
10_1101-2021_01_07_425794	222	28	as	as	IN
10_1101-2021_01_07_425794	222	29	in	in	IN
10_1101-2021_01_07_425794	222	30	the	the	DT
10_1101-2021_01_07_425794	222	31	RNA	RNA	NNP
10_1101-2021_01_07_425794	222	32	-	-	HYPH
10_1101-2021_01_07_425794	222	33	seq	seq	NN
10_1101-2021_01_07_425794	222	34	data	datum	NNS
10_1101-2021_01_07_425794	222	35	used	use	VBN
10_1101-2021_01_07_425794	222	36	in	in	IN
10_1101-2021_01_07_425794	222	37	this	this	DT
10_1101-2021_01_07_425794	222	38	study	study	NN
10_1101-2021_01_07_425794	222	39	,	,	,
10_1101-2021_01_07_425794	222	40	was	be	VBD
10_1101-2021_01_07_425794	222	41	used	use	VBN
10_1101-2021_01_07_425794	222	42	to	to	TO
10_1101-2021_01_07_425794	222	43	further	further	RB
10_1101-2021_01_07_425794	222	44	validate	validate	VB
10_1101-2021_01_07_425794	222	45	the	the	DT
10_1101-2021_01_07_425794	222	46	gene	gene	NN
10_1101-2021_01_07_425794	222	47	-	-	HYPH
10_1101-2021_01_07_425794	222	48	level	level	NN
10_1101-2021_01_07_425794	222	49	RNA	RNA	NNP
10_1101-2021_01_07_425794	222	50	-	-	HYPH
10_1101-2021_01_07_425794	222	51	seq	seq	NN
10_1101-2021_01_07_425794	222	52	quantification	quantification	NN
10_1101-2021_01_07_425794	222	53	results	result	NNS
10_1101-2021_01_07_425794	222	54	obtained	obtain	VBN
10_1101-2021_01_07_425794	222	55	from	from	IN
10_1101-2021_01_07_425794	222	56	different	different	JJ
10_1101-2021_01_07_425794	222	57	annota-	annota-	JJ
10_1101-2021_01_07_425794	222	58	tions	tion	NNS
10_1101-2021_01_07_425794	222	59	.	.	.
10_1101-2021_01_07_425794	223	1	The	the	DT
10_1101-2021_01_07_425794	223	2	microarray	microarray	JJ
10_1101-2021_01_07_425794	223	3	dataset	dataset	NN
10_1101-2021_01_07_425794	223	4	was	be	VBD
10_1101-2021_01_07_425794	223	5	background	background	NN
10_1101-2021_01_07_425794	223	6	corrected	correct	VBN
10_1101-2021_01_07_425794	223	7	and	and	CC
10_1101-2021_01_07_425794	223	8	normalized	normalize	VBD
10_1101-2021_01_07_425794	223	9	using	use	VBG
10_1101-2021_01_07_425794	223	10	the	the	DT
10_1101-2021_01_07_425794	223	11	‘	'	``
10_1101-2021_01_07_425794	223	12	neqc	neqc	NN
10_1101-2021_01_07_425794	223	13	’	'	''
10_1101-2021_01_07_425794	223	14	function	function	NN
10_1101-2021_01_07_425794	223	15	in	in	IN
10_1101-2021_01_07_425794	223	16	the	the	DT
10_1101-2021_01_07_425794	223	17	limma	limma	NN
10_1101-2021_01_07_425794	223	18	package	package	NN
10_1101-2021_01_07_425794	223	19	[	[	-LRB-
10_1101-2021_01_07_425794	223	20	26	26	CD
10_1101-2021_01_07_425794	223	21	,	,	,
10_1101-2021_01_07_425794	223	22	18	18	CD
10_1101-2021_01_07_425794	223	23	]	]	-RRB-
10_1101-2021_01_07_425794	223	24	.	.	.
10_1101-2021_01_07_425794	224	1	Microarray	microarray	JJ
10_1101-2021_01_07_425794	224	2	genes	gene	NNS
10_1101-2021_01_07_425794	224	3	were	be	VBD
10_1101-2021_01_07_425794	224	4	then	then	RB
10_1101-2021_01_07_425794	224	5	matched	match	VBN
10_1101-2021_01_07_425794	224	6	to	to	IN
10_1101-2021_01_07_425794	224	7	the	the	DT
10_1101-2021_01_07_425794	224	8	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	224	9	seq	seq	NN
10_1101-2021_01_07_425794	224	10	genes	gene	NNS
10_1101-2021_01_07_425794	224	11	included	include	VBN
10_1101-2021_01_07_425794	224	12	in	in	IN
10_1101-2021_01_07_425794	224	13	the	the	DT
10_1101-2021_01_07_425794	224	14	filtered	filter	VBN
10_1101-2021_01_07_425794	224	15	RNA	RNA	NNP
10_1101-2021_01_07_425794	224	16	-	-	HYPH
10_1101-2021_01_07_425794	224	17	seq	seq	NN
10_1101-2021_01_07_425794	224	18	data	datum	NNS
10_1101-2021_01_07_425794	224	19	.	.	.
10_1101-2021_01_07_425794	225	1	14,405	14,405	CD
10_1101-2021_01_07_425794	225	2	,	,	,
10_1101-2021_01_07_425794	225	3	14,561	14,561	CD
10_1101-2021_01_07_425794	225	4	and	and	CC
10_1101-2021_01_07_425794	225	5	14,508	14,508	CD
10_1101-2021_01_07_425794	225	6	microarray	microarray	JJ
10_1101-2021_01_07_425794	225	7	genes	gene	NNS
10_1101-2021_01_07_425794	225	8	were	be	VBD
10_1101-2021_01_07_425794	225	9	found	find	VBN
10_1101-2021_01_07_425794	225	10	to	to	TO
10_1101-2021_01_07_425794	225	11	be	be	VB
10_1101-2021_01_07_425794	225	12	matched	match	VBN
10_1101-2021_01_07_425794	225	13	with	with	IN
10_1101-2021_01_07_425794	225	14	RNA	RNA	NNP
10_1101-2021_01_07_425794	225	15	-	-	HYPH
10_1101-2021_01_07_425794	225	16	seq	seq	NN
10_1101-2021_01_07_425794	225	17	genes	gene	NNS
10_1101-2021_01_07_425794	225	18	from	from	IN
10_1101-2021_01_07_425794	225	19	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	225	20	,	,	,
10_1101-2021_01_07_425794	225	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	225	22	-	-	HYPH
10_1101-2021_01_07_425794	225	23	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	225	24	and	and	CC
10_1101-2021_01_07_425794	225	25	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	225	26	-	-	HYPH
10_1101-2021_01_07_425794	225	27	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	225	28	annotations	annotation	NNS
10_1101-2021_01_07_425794	225	29	,	,	,
10_1101-2021_01_07_425794	225	30	respectively	respectively	RB
10_1101-2021_01_07_425794	225	31	.	.	.
10_1101-2021_01_07_425794	226	1	13,424	13,424	CD
10_1101-2021_01_07_425794	226	2	microarray	microarray	JJ
10_1101-2021_01_07_425794	226	3	genes	gene	NNS
10_1101-2021_01_07_425794	226	4	were	be	VBD
10_1101-2021_01_07_425794	226	5	found	find	VBN
10_1101-2021_01_07_425794	226	6	to	to	TO
10_1101-2021_01_07_425794	226	7	be	be	VB
10_1101-2021_01_07_425794	226	8	present	present	JJ
10_1101-2021_01_07_425794	226	9	in	in	IN
10_1101-2021_01_07_425794	226	10	all	all	DT
10_1101-2021_01_07_425794	226	11	three	three	CD
10_1101-2021_01_07_425794	226	12	annotations	annotation	NNS
10_1101-2021_01_07_425794	226	13	.	.	.
10_1101-2021_01_07_425794	227	1	For	for	IN
10_1101-2021_01_07_425794	227	2	those	those	DT
10_1101-2021_01_07_425794	227	3	microarray	microarray	JJ
10_1101-2021_01_07_425794	227	4	genes	gene	NNS
10_1101-2021_01_07_425794	227	5	that	that	WDT
10_1101-2021_01_07_425794	227	6	contain	contain	VBP
10_1101-2021_01_07_425794	227	7	more	more	JJR
10_1101-2021_01_07_425794	227	8	than	than	IN
10_1101-2021_01_07_425794	227	9	one	one	CD
10_1101-2021_01_07_425794	227	10	probe	probe	NN
10_1101-2021_01_07_425794	227	11	,	,	,
10_1101-2021_01_07_425794	227	12	a	a	DT
10_1101-2021_01_07_425794	227	13	representative	representative	JJ
10_1101-2021_01_07_425794	227	14	probe	probe	NN
10_1101-2021_01_07_425794	227	15	was	be	VBD
10_1101-2021_01_07_425794	227	16	selected	select	VBN
10_1101-2021_01_07_425794	227	17	for	for	IN
10_1101-2021_01_07_425794	227	18	each	each	DT
10_1101-2021_01_07_425794	227	19	of	of	IN
10_1101-2021_01_07_425794	227	20	them	-PRON-	PRP
10_1101-2021_01_07_425794	227	21	.	.	.
10_1101-2021_01_07_425794	228	1	The	the	DT
10_1101-2021_01_07_425794	228	2	representative	representative	JJ
10_1101-2021_01_07_425794	228	3	probe	probe	NN
10_1101-2021_01_07_425794	228	4	selected	select	VBN
10_1101-2021_01_07_425794	228	5	for	for	IN
10_1101-2021_01_07_425794	228	6	a	a	DT
10_1101-2021_01_07_425794	228	7	gene	gene	NN
10_1101-2021_01_07_425794	228	8	had	have	VBD
10_1101-2021_01_07_425794	228	9	the	the	DT
10_1101-2021_01_07_425794	228	10	highest	high	JJS
10_1101-2021_01_07_425794	228	11	mean	mean	JJ
10_1101-2021_01_07_425794	228	12	expression	expression	NN
10_1101-2021_01_07_425794	228	13	value	value	NN
10_1101-2021_01_07_425794	228	14	across	across	IN
10_1101-2021_01_07_425794	228	15	the	the	DT
10_1101-2021_01_07_425794	228	16	four	four	CD
10_1101-2021_01_07_425794	228	17	samples	sample	NNS
10_1101-2021_01_07_425794	228	18	among	among	IN
10_1101-2021_01_07_425794	228	19	all	all	PDT
10_1101-2021_01_07_425794	228	20	the	the	DT
10_1101-2021_01_07_425794	228	21	probes	probe	NNS
10_1101-2021_01_07_425794	228	22	the	the	DT
10_1101-2021_01_07_425794	228	23	gene	gene	NN
10_1101-2021_01_07_425794	228	24	has	have	VBZ
10_1101-2021_01_07_425794	228	25	.	.	.
10_1101-2021_01_07_425794	229	1	A	a	DT
10_1101-2021_01_07_425794	229	2	Pearson	Pearson	NNP
10_1101-2021_01_07_425794	229	3	correlation	correlation	NN
10_1101-2021_01_07_425794	229	4	analysis	analysis	NN
10_1101-2021_01_07_425794	229	5	was	be	VBD
10_1101-2021_01_07_425794	229	6	then	then	RB
10_1101-2021_01_07_425794	229	7	performed	perform	VBN
10_1101-2021_01_07_425794	229	8	between	between	IN
10_1101-2021_01_07_425794	229	9	microarray	microarray	JJ
10_1101-2021_01_07_425794	229	10	data	datum	NNS
10_1101-2021_01_07_425794	229	11	and	and	CC
10_1101-2021_01_07_425794	229	12	RNA	RNA	NNP
10_1101-2021_01_07_425794	229	13	-	-	HYPH
10_1101-2021_01_07_425794	229	14	seq	seq	NN
10_1101-2021_01_07_425794	229	15	data	datum	NNS
10_1101-2021_01_07_425794	229	16	for	for	IN
10_1101-2021_01_07_425794	229	17	each	each	DT
10_1101-2021_01_07_425794	229	18	of	of	IN
10_1101-2021_01_07_425794	229	19	the	the	DT
10_1101-2021_01_07_425794	229	20	three	three	CD
10_1101-2021_01_07_425794	229	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	229	22	.	.	.
10_1101-2021_01_07_425794	230	1	Both	both	DT
10_1101-2021_01_07_425794	230	2	RNA	RNA	NNP
10_1101-2021_01_07_425794	230	3	-	-	HYPH
10_1101-2021_01_07_425794	230	4	seq	seq	NN
10_1101-2021_01_07_425794	230	5	and	and	CC
10_1101-2021_01_07_425794	230	6	microarray	microarray	NNP
10_1101-2021_01_07_425794	230	7	data	datum	NNS
10_1101-2021_01_07_425794	230	8	include	include	VBP
10_1101-2021_01_07_425794	230	9	log2	log2	NN
10_1101-2021_01_07_425794	230	10	expression	expression	NN
10_1101-2021_01_07_425794	230	11	values	value	NNS
10_1101-2021_01_07_425794	230	12	of	of	IN
10_1101-2021_01_07_425794	230	13	genes	gene	NNS
10_1101-2021_01_07_425794	230	14	.	.	.
10_1101-2021_01_07_425794	231	1	Figure	figure	NN
10_1101-2021_01_07_425794	231	2	7	7	CD
10_1101-2021_01_07_425794	231	3	shows	show	VBZ
10_1101-2021_01_07_425794	231	4	that	that	IN
10_1101-2021_01_07_425794	231	5	the	the	DT
10_1101-2021_01_07_425794	231	6	use	use	NN
10_1101-2021_01_07_425794	231	7	of	of	IN
10_1101-2021_01_07_425794	231	8	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	231	9	-	-	HYPH
10_1101-2021_01_07_425794	231	10	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	231	11	annotation	annotation	NN
10_1101-2021_01_07_425794	231	12	consistently	consistently	RB
10_1101-2021_01_07_425794	231	13	yielded	yield	VBD
10_1101-2021_01_07_425794	231	14	the	the	DT
10_1101-2021_01_07_425794	231	15	highest	high	JJS
10_1101-2021_01_07_425794	231	16	correlation	correlation	NN
10_1101-2021_01_07_425794	231	17	between	between	IN
10_1101-2021_01_07_425794	231	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	231	19	-	-	HYPH
10_1101-2021_01_07_425794	231	20	seq	seq	NN
10_1101-2021_01_07_425794	231	21	and	and	CC
10_1101-2021_01_07_425794	231	22	microarray	microarray	JJ
10_1101-2021_01_07_425794	231	23	data	datum	NNS
10_1101-2021_01_07_425794	231	24	in	in	IN
10_1101-2021_01_07_425794	231	25	all	all	PDT
10_1101-2021_01_07_425794	231	26	the	the	DT
10_1101-2021_01_07_425794	231	27	comparisons	comparison	NNS
10_1101-2021_01_07_425794	231	28	,	,	,
10_1101-2021_01_07_425794	231	29	no	no	RB
10_1101-2021_01_07_425794	231	30	matter	matter	RB
10_1101-2021_01_07_425794	231	31	which	which	WDT
10_1101-2021_01_07_425794	231	32	RNA	RNA	NNP
10_1101-2021_01_07_425794	231	33	-	-	HYPH
10_1101-2021_01_07_425794	231	34	seq	seq	NNP
10_1101-2021_01_07_425794	231	35	normalization	normalization	NN
10_1101-2021_01_07_425794	231	36	method	method	NN
10_1101-2021_01_07_425794	231	37	was	be	VBD
10_1101-2021_01_07_425794	231	38	used	use	VBN
10_1101-2021_01_07_425794	231	39	and	and	CC
10_1101-2021_01_07_425794	231	40	if	if	IN
10_1101-2021_01_07_425794	231	41	all	all	DT
10_1101-2021_01_07_425794	231	42	or	or	CC
10_1101-2021_01_07_425794	231	43	common	common	JJ
10_1101-2021_01_07_425794	231	44	matched	match	VBN
10_1101-2021_01_07_425794	231	45	genes	gene	NNS
10_1101-2021_01_07_425794	231	46	were	be	VBD
10_1101-2021_01_07_425794	231	47	included	include	VBN
10_1101-2021_01_07_425794	231	48	in	in	IN
10_1101-2021_01_07_425794	231	49	the	the	DT
10_1101-2021_01_07_425794	231	50	evaluation	evaluation	NN
10_1101-2021_01_07_425794	231	51	.	.	.
10_1101-2021_01_07_425794	232	1	On	on	IN
10_1101-2021_01_07_425794	232	2	the	the	DT
10_1101-2021_01_07_425794	232	3	other	other	JJ
10_1101-2021_01_07_425794	232	4	hand	hand	NN
10_1101-2021_01_07_425794	232	5	,	,	,
10_1101-2021_01_07_425794	232	6	the	the	DT
10_1101-2021_01_07_425794	232	7	use	use	NN
10_1101-2021_01_07_425794	232	8	of	of	IN
10_1101-2021_01_07_425794	232	9	the	the	DT
10_1101-2021_01_07_425794	232	10	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	232	11	annotation	annotation	NN
10_1101-2021_01_07_425794	232	12	resulted	result	VBD
10_1101-2021_01_07_425794	232	13	in	in	IN
10_1101-2021_01_07_425794	232	14	the	the	DT
10_1101-2021_01_07_425794	232	15	worst	bad	JJS
10_1101-2021_01_07_425794	232	16	correlation	correlation	NN
10_1101-2021_01_07_425794	232	17	between	between	IN
10_1101-2021_01_07_425794	232	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	232	19	-	-	HYPH
10_1101-2021_01_07_425794	232	20	seq	seq	NN
10_1101-2021_01_07_425794	232	21	data	datum	NNS
10_1101-2021_01_07_425794	232	22	and	and	CC
10_1101-2021_01_07_425794	232	23	microarray	microarray	JJ
10_1101-2021_01_07_425794	232	24	data	datum	NNS
10_1101-2021_01_07_425794	232	25	in	in	IN
10_1101-2021_01_07_425794	232	26	all	all	PDT
10_1101-2021_01_07_425794	232	27	the	the	DT
10_1101-2021_01_07_425794	232	28	comparisons	comparison	NNS
10_1101-2021_01_07_425794	232	29	.	.	.
10_1101-2021_01_07_425794	233	1	17	17	CD
10_1101-2021_01_07_425794	233	2	.CC	.CC	:
10_1101-2021_01_07_425794	233	3	-	-	HYPH
10_1101-2021_01_07_425794	233	4	BY	by	IN
10_1101-2021_01_07_425794	233	5	-	-	HYPH
10_1101-2021_01_07_425794	233	6	NC	NC	NNP
10_1101-2021_01_07_425794	233	7	-	-	HYPH
10_1101-2021_01_07_425794	233	8	ND	ND	NNP
10_1101-2021_01_07_425794	233	9	4.0	4.0	CD
10_1101-2021_01_07_425794	233	10	International	international	JJ
10_1101-2021_01_07_425794	233	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	233	12	available	available	JJ
10_1101-2021_01_07_425794	233	13	under	under	IN
10_1101-2021_01_07_425794	233	14	a	a	DT
10_1101-2021_01_07_425794	233	15	(	(	-LRB-
10_1101-2021_01_07_425794	233	16	which	which	WDT
10_1101-2021_01_07_425794	233	17	was	be	VBD
10_1101-2021_01_07_425794	233	18	not	not	RB
10_1101-2021_01_07_425794	233	19	certified	certify	VBN
10_1101-2021_01_07_425794	233	20	by	by	IN
10_1101-2021_01_07_425794	233	21	peer	peer	NN
10_1101-2021_01_07_425794	233	22	review	review	NN
10_1101-2021_01_07_425794	233	23	)	)	-RRB-
10_1101-2021_01_07_425794	233	24	is	be	VBZ
10_1101-2021_01_07_425794	233	25	the	the	DT
10_1101-2021_01_07_425794	233	26	author	author	NN
10_1101-2021_01_07_425794	233	27	/	/	SYM
10_1101-2021_01_07_425794	233	28	funder	funder	NN
10_1101-2021_01_07_425794	233	29	,	,	,
10_1101-2021_01_07_425794	233	30	who	who	WP
10_1101-2021_01_07_425794	233	31	has	have	VBZ
10_1101-2021_01_07_425794	233	32	granted	grant	VBN
10_1101-2021_01_07_425794	233	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	233	34	a	a	DT
10_1101-2021_01_07_425794	233	35	license	license	NN
10_1101-2021_01_07_425794	233	36	to	to	TO
10_1101-2021_01_07_425794	233	37	display	display	VB
10_1101-2021_01_07_425794	233	38	the	the	DT
10_1101-2021_01_07_425794	233	39	preprint	preprint	NN
10_1101-2021_01_07_425794	233	40	in	in	IN
10_1101-2021_01_07_425794	233	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	233	42	.	.	.
10_1101-2021_01_07_425794	234	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	234	2	is	be	VBZ
10_1101-2021_01_07_425794	234	3	The	the	DT
10_1101-2021_01_07_425794	234	4	copyright	copyright	NN
10_1101-2021_01_07_425794	234	5	holder	holder	NN
10_1101-2021_01_07_425794	234	6	for	for	IN
10_1101-2021_01_07_425794	234	7	this	this	DT
10_1101-2021_01_07_425794	234	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	234	9	version	version	NN
10_1101-2021_01_07_425794	234	10	posted	post	VBD
10_1101-2021_01_07_425794	234	11	January	January	NNP
10_1101-2021_01_07_425794	234	12	8	8	CD
10_1101-2021_01_07_425794	234	13	,	,	,
10_1101-2021_01_07_425794	234	14	2021	2021	CD
10_1101-2021_01_07_425794	234	15	.	.	.
10_1101-2021_01_07_425794	234	16	;	;	:
10_1101-2021_01_07_425794	234	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	234	18	:	:	:
10_1101-2021_01_07_425794	234	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	234	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	234	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	234	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	234	23	C	C	NNP
10_1101-2021_01_07_425794	234	24	or	or	CC
10_1101-2021_01_07_425794	234	25	re	re	VB
10_1101-2021_01_07_425794	234	26	la	la	NNP
10_1101-2021_01_07_425794	234	27	tio	tio	NNP
10_1101-2021_01_07_425794	234	28	n	n	NNP
10_1101-2021_01_07_425794	234	29	co	co	NNP
10_1101-2021_01_07_425794	234	30	ef	ef	NNP
10_1101-2021_01_07_425794	234	31	fic	fic	NNP
10_1101-2021_01_07_425794	234	32	ie	ie	NNP
10_1101-2021_01_07_425794	234	33	nt	nt	RB
10_1101-2021_01_07_425794	234	34	All	all	DT
10_1101-2021_01_07_425794	234	35	genes	gene	NNS
10_1101-2021_01_07_425794	234	36	after	after	IN
10_1101-2021_01_07_425794	234	37	filtering	filter	VBG
10_1101-2021_01_07_425794	234	38	Common	common	JJ
10_1101-2021_01_07_425794	234	39	genes	gene	NNS
10_1101-2021_01_07_425794	234	40	after	after	IN
10_1101-2021_01_07_425794	234	41	filtering	filter	VBG
10_1101-2021_01_07_425794	234	42	C	C	NNP
10_1101-2021_01_07_425794	234	43	or	or	CC
10_1101-2021_01_07_425794	234	44	re	re	VB
10_1101-2021_01_07_425794	234	45	la	la	NNP
10_1101-2021_01_07_425794	234	46	tio	tio	NNP
10_1101-2021_01_07_425794	234	47	n	n	NNP
10_1101-2021_01_07_425794	234	48	co	co	NNP
10_1101-2021_01_07_425794	234	49	ef	ef	NNP
10_1101-2021_01_07_425794	234	50	fic	fic	NNP
10_1101-2021_01_07_425794	234	51	ie	ie	NNP
10_1101-2021_01_07_425794	234	52	nt	nt	RB
10_1101-2021_01_07_425794	234	53	0.60	0.60	CD
10_1101-2021_01_07_425794	234	54	0.65	0.65	CD
10_1101-2021_01_07_425794	234	55	0.70	0.70	CD
10_1101-2021_01_07_425794	234	56	0.75	0.75	CD
10_1101-2021_01_07_425794	234	57	A	a	NN
10_1101-2021_01_07_425794	234	58	B	b	NN
10_1101-2021_01_07_425794	234	59	C	c	NN
10_1101-2021_01_07_425794	234	60	D	d	NN
10_1101-2021_01_07_425794	234	61	A	a	NN
10_1101-2021_01_07_425794	234	62	B	b	NN
10_1101-2021_01_07_425794	234	63	C	c	NN
10_1101-2021_01_07_425794	234	64	D	D	NNP
10_1101-2021_01_07_425794	234	65	Li	Li	NNP
10_1101-2021_01_07_425794	234	66	br	br	NN
10_1101-2021_01_07_425794	234	67	ar	ar	NNP
10_1101-2021_01_07_425794	234	68	y	y	NNP
10_1101-2021_01_07_425794	234	69	si	si	NN
10_1101-2021_01_07_425794	234	70	ze	ze	UH
10_1101-2021_01_07_425794	234	71	no	no	UH
10_1101-2021_01_07_425794	234	72	rm	rm	NNP
10_1101-2021_01_07_425794	234	73	al	al	NNP
10_1101-2021_01_07_425794	234	74	iz	iz	NNP
10_1101-2021_01_07_425794	234	75	at	at	IN
10_1101-2021_01_07_425794	234	76	io	io	NNP
10_1101-2021_01_07_425794	234	77	n	n	NNP
10_1101-2021_01_07_425794	234	78	Q	Q	NNP
10_1101-2021_01_07_425794	234	79	ua	ua	PRP
10_1101-2021_01_07_425794	234	80	nt	nt	RB
10_1101-2021_01_07_425794	234	81	ile	ile	VB
10_1101-2021_01_07_425794	234	82	no	no	UH
10_1101-2021_01_07_425794	234	83	rm	rm	NNP
10_1101-2021_01_07_425794	234	84	al	al	NNP
10_1101-2021_01_07_425794	234	85	iz	iz	NNP
10_1101-2021_01_07_425794	234	86	at	at	IN
10_1101-2021_01_07_425794	234	87	io	io	NNP
10_1101-2021_01_07_425794	234	88	n	n	CC
10_1101-2021_01_07_425794	234	89	TM	TM	NNP
10_1101-2021_01_07_425794	234	90	M	M	NNP
10_1101-2021_01_07_425794	234	91	no	no	UH
10_1101-2021_01_07_425794	234	92	rm	rm	NNP
10_1101-2021_01_07_425794	234	93	al	al	NNP
10_1101-2021_01_07_425794	234	94	iz	iz	NNP
10_1101-2021_01_07_425794	234	95	at	at	IN
10_1101-2021_01_07_425794	234	96	io	io	NNP
10_1101-2021_01_07_425794	234	97	n	n	CC
10_1101-2021_01_07_425794	234	98	C	C	NNP
10_1101-2021_01_07_425794	234	99	or	or	CC
10_1101-2021_01_07_425794	234	100	re	re	VB
10_1101-2021_01_07_425794	234	101	la	la	NNP
10_1101-2021_01_07_425794	234	102	tio	tio	NNP
10_1101-2021_01_07_425794	234	103	n	n	NNP
10_1101-2021_01_07_425794	234	104	co	co	NNP
10_1101-2021_01_07_425794	234	105	ef	ef	NNP
10_1101-2021_01_07_425794	234	106	fic	fic	NNP
10_1101-2021_01_07_425794	234	107	ie	ie	NNP
10_1101-2021_01_07_425794	234	108	nt	nt	RB
10_1101-2021_01_07_425794	234	109	0.80	0.80	CD
10_1101-2021_01_07_425794	234	110	0.60	0.60	CD
10_1101-2021_01_07_425794	234	111	0.65	0.65	CD
10_1101-2021_01_07_425794	234	112	0.70	0.70	CD
10_1101-2021_01_07_425794	234	113	0.75	0.75	CD
10_1101-2021_01_07_425794	234	114	0.80	0.80	CD
10_1101-2021_01_07_425794	234	115	0.60	0.60	CD
10_1101-2021_01_07_425794	234	116	0.65	0.65	CD
10_1101-2021_01_07_425794	234	117	0.70	0.70	CD
10_1101-2021_01_07_425794	234	118	0.75	0.75	CD
10_1101-2021_01_07_425794	234	119	0.80	0.80	CD
10_1101-2021_01_07_425794	234	120	0.60	0.60	CD
10_1101-2021_01_07_425794	234	121	0.65	0.65	CD
10_1101-2021_01_07_425794	234	122	0.70	0.70	CD
10_1101-2021_01_07_425794	234	123	0.75	0.75	CD
10_1101-2021_01_07_425794	234	124	0.80	0.80	CD
10_1101-2021_01_07_425794	234	125	0.60	0.60	CD
10_1101-2021_01_07_425794	234	126	0.65	0.65	CD
10_1101-2021_01_07_425794	234	127	0.70	0.70	CD
10_1101-2021_01_07_425794	234	128	0.75	0.75	CD
10_1101-2021_01_07_425794	234	129	0.80	0.80	CD
10_1101-2021_01_07_425794	234	130	0.60	0.60	CD
10_1101-2021_01_07_425794	234	131	0.65	0.65	CD
10_1101-2021_01_07_425794	234	132	0.70	0.70	CD
10_1101-2021_01_07_425794	234	133	0.75	0.75	CD
10_1101-2021_01_07_425794	234	134	0.80	0.80	CD
10_1101-2021_01_07_425794	234	135	Key	Key	NNP
10_1101-2021_01_07_425794	234	136	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	234	137	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	234	138	-	-	HYPH
10_1101-2021_01_07_425794	234	139	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	234	140	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	234	141	-	-	HYPH
10_1101-2021_01_07_425794	234	142	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	234	143	Figure	Figure	NNP
10_1101-2021_01_07_425794	234	144	7	7	CD
10_1101-2021_01_07_425794	234	145	:	:	:
10_1101-2021_01_07_425794	234	146	Validation	validation	NN
10_1101-2021_01_07_425794	234	147	of	of	IN
10_1101-2021_01_07_425794	234	148	RNA	RNA	NNP
10_1101-2021_01_07_425794	234	149	-	-	HYPH
10_1101-2021_01_07_425794	234	150	seq	seq	NN
10_1101-2021_01_07_425794	234	151	quantification	quantification	NN
10_1101-2021_01_07_425794	234	152	results	result	NNS
10_1101-2021_01_07_425794	234	153	against	against	IN
10_1101-2021_01_07_425794	234	154	microarray	microarray	JJ
10_1101-2021_01_07_425794	234	155	data	datum	NNS
10_1101-2021_01_07_425794	234	156	.	.	.
10_1101-2021_01_07_425794	235	1	Shown	show	VBN
10_1101-2021_01_07_425794	235	2	are	be	VBP
10_1101-2021_01_07_425794	235	3	Pearson	Pearson	NNP
10_1101-2021_01_07_425794	235	4	correlation	correlation	NN
10_1101-2021_01_07_425794	235	5	coefficients	coefficient	NNS
10_1101-2021_01_07_425794	235	6	computed	compute	VBD
10_1101-2021_01_07_425794	235	7	from	from	IN
10_1101-2021_01_07_425794	235	8	comparing	compare	VBG
10_1101-2021_01_07_425794	235	9	RNA	RNA	NNP
10_1101-2021_01_07_425794	235	10	-	-	HYPH
10_1101-2021_01_07_425794	235	11	seq	seq	NN
10_1101-2021_01_07_425794	235	12	data	datum	NNS
10_1101-2021_01_07_425794	235	13	against	against	IN
10_1101-2021_01_07_425794	235	14	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	235	15	BeadChip	BeadChip	NNP
10_1101-2021_01_07_425794	235	16	microarray	microarray	JJ
10_1101-2021_01_07_425794	235	17	data	datum	NNS
10_1101-2021_01_07_425794	235	18	,	,	,
10_1101-2021_01_07_425794	235	19	using	use	VBG
10_1101-2021_01_07_425794	235	20	the	the	DT
10_1101-2021_01_07_425794	235	21	microarray	microarray	JJ
10_1101-2021_01_07_425794	235	22	genes	gene	NNS
10_1101-2021_01_07_425794	235	23	matched	match	VBN
10_1101-2021_01_07_425794	235	24	with	with	IN
10_1101-2021_01_07_425794	235	25	each	each	DT
10_1101-2021_01_07_425794	235	26	individual	individual	JJ
10_1101-2021_01_07_425794	235	27	annotation	annotation	NN
10_1101-2021_01_07_425794	235	28	(	(	-LRB-
10_1101-2021_01_07_425794	235	29	left	leave	VBN
10_1101-2021_01_07_425794	235	30	column	column	NN
10_1101-2021_01_07_425794	235	31	)	)	-RRB-
10_1101-2021_01_07_425794	235	32	or	or	CC
10_1101-2021_01_07_425794	235	33	matched	match	VBN
10_1101-2021_01_07_425794	235	34	with	with	IN
10_1101-2021_01_07_425794	235	35	all	all	DT
10_1101-2021_01_07_425794	235	36	three	three	CD
10_1101-2021_01_07_425794	235	37	annotations	annotation	NNS
10_1101-2021_01_07_425794	235	38	(	(	-LRB-
10_1101-2021_01_07_425794	235	39	right	right	JJ
10_1101-2021_01_07_425794	235	40	column	column	NN
10_1101-2021_01_07_425794	235	41	)	)	-RRB-
10_1101-2021_01_07_425794	235	42	.	.	.
10_1101-2021_01_07_425794	236	1	Rows	row	NNS
10_1101-2021_01_07_425794	236	2	in	in	IN
10_1101-2021_01_07_425794	236	3	the	the	DT
10_1101-2021_01_07_425794	236	4	plots	plot	NNS
10_1101-2021_01_07_425794	236	5	represent	represent	VBP
10_1101-2021_01_07_425794	236	6	the	the	DT
10_1101-2021_01_07_425794	236	7	different	different	JJ
10_1101-2021_01_07_425794	236	8	RNA	RNA	NNP
10_1101-2021_01_07_425794	236	9	-	-	HYPH
10_1101-2021_01_07_425794	236	10	seq	seq	NN
10_1101-2021_01_07_425794	236	11	normalization	normalization	NN
10_1101-2021_01_07_425794	236	12	methods	method	NNS
10_1101-2021_01_07_425794	236	13	used	use	VBN
10_1101-2021_01_07_425794	236	14	.	.	.
10_1101-2021_01_07_425794	237	1	Lowly	Lowly	NNP
10_1101-2021_01_07_425794	237	2	expressed	express	VBD
10_1101-2021_01_07_425794	237	3	genes	gene	NNS
10_1101-2021_01_07_425794	237	4	in	in	IN
10_1101-2021_01_07_425794	237	5	the	the	DT
10_1101-2021_01_07_425794	237	6	RNA	RNA	NNP
10_1101-2021_01_07_425794	237	7	-	-	HYPH
10_1101-2021_01_07_425794	237	8	seq	seq	NN
10_1101-2021_01_07_425794	237	9	data	datum	NNS
10_1101-2021_01_07_425794	237	10	were	be	VBD
10_1101-2021_01_07_425794	237	11	filtered	filter	VBN
10_1101-2021_01_07_425794	237	12	out	out	RP
10_1101-2021_01_07_425794	237	13	before	before	IN
10_1101-2021_01_07_425794	237	14	the	the	DT
10_1101-2021_01_07_425794	237	15	correlation	correlation	NN
10_1101-2021_01_07_425794	237	16	analysis	analysis	NN
10_1101-2021_01_07_425794	237	17	was	be	VBD
10_1101-2021_01_07_425794	237	18	performed	perform	VBN
10_1101-2021_01_07_425794	237	19	.	.	.
10_1101-2021_01_07_425794	238	1	For	for	IN
10_1101-2021_01_07_425794	238	2	those	those	DT
10_1101-2021_01_07_425794	238	3	microarray	microarray	JJ
10_1101-2021_01_07_425794	238	4	genes	gene	NNS
10_1101-2021_01_07_425794	238	5	that	that	WDT
10_1101-2021_01_07_425794	238	6	include	include	VBP
10_1101-2021_01_07_425794	238	7	more	more	JJR
10_1101-2021_01_07_425794	238	8	than	than	IN
10_1101-2021_01_07_425794	238	9	one	one	CD
10_1101-2021_01_07_425794	238	10	probe	probe	NN
10_1101-2021_01_07_425794	238	11	,	,	,
10_1101-2021_01_07_425794	238	12	a	a	DT
10_1101-2021_01_07_425794	238	13	representative	representative	JJ
10_1101-2021_01_07_425794	238	14	probe	probe	NN
10_1101-2021_01_07_425794	238	15	was	be	VBD
10_1101-2021_01_07_425794	238	16	selected	select	VBN
10_1101-2021_01_07_425794	238	17	and	and	CC
10_1101-2021_01_07_425794	238	18	used	use	VBN
10_1101-2021_01_07_425794	238	19	for	for	IN
10_1101-2021_01_07_425794	238	20	this	this	DT
10_1101-2021_01_07_425794	238	21	analysis	analysis	NN
10_1101-2021_01_07_425794	238	22	.	.	.
10_1101-2021_01_07_425794	239	1	18	18	CD
10_1101-2021_01_07_425794	239	2	.CC	.CC	:
10_1101-2021_01_07_425794	239	3	-	-	HYPH
10_1101-2021_01_07_425794	239	4	BY	by	IN
10_1101-2021_01_07_425794	239	5	-	-	HYPH
10_1101-2021_01_07_425794	239	6	NC	NC	NNP
10_1101-2021_01_07_425794	239	7	-	-	HYPH
10_1101-2021_01_07_425794	239	8	ND	ND	NNP
10_1101-2021_01_07_425794	239	9	4.0	4.0	CD
10_1101-2021_01_07_425794	239	10	International	international	JJ
10_1101-2021_01_07_425794	239	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	239	12	available	available	JJ
10_1101-2021_01_07_425794	239	13	under	under	IN
10_1101-2021_01_07_425794	239	14	a	a	DT
10_1101-2021_01_07_425794	239	15	(	(	-LRB-
10_1101-2021_01_07_425794	239	16	which	which	WDT
10_1101-2021_01_07_425794	239	17	was	be	VBD
10_1101-2021_01_07_425794	239	18	not	not	RB
10_1101-2021_01_07_425794	239	19	certified	certify	VBN
10_1101-2021_01_07_425794	239	20	by	by	IN
10_1101-2021_01_07_425794	239	21	peer	peer	NN
10_1101-2021_01_07_425794	239	22	review	review	NN
10_1101-2021_01_07_425794	239	23	)	)	-RRB-
10_1101-2021_01_07_425794	239	24	is	be	VBZ
10_1101-2021_01_07_425794	239	25	the	the	DT
10_1101-2021_01_07_425794	239	26	author	author	NN
10_1101-2021_01_07_425794	239	27	/	/	SYM
10_1101-2021_01_07_425794	239	28	funder	funder	NN
10_1101-2021_01_07_425794	239	29	,	,	,
10_1101-2021_01_07_425794	239	30	who	who	WP
10_1101-2021_01_07_425794	239	31	has	have	VBZ
10_1101-2021_01_07_425794	239	32	granted	grant	VBN
10_1101-2021_01_07_425794	239	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	239	34	a	a	DT
10_1101-2021_01_07_425794	239	35	license	license	NN
10_1101-2021_01_07_425794	239	36	to	to	TO
10_1101-2021_01_07_425794	239	37	display	display	VB
10_1101-2021_01_07_425794	239	38	the	the	DT
10_1101-2021_01_07_425794	239	39	preprint	preprint	NN
10_1101-2021_01_07_425794	239	40	in	in	IN
10_1101-2021_01_07_425794	239	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	239	42	.	.	.
10_1101-2021_01_07_425794	240	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	240	2	is	be	VBZ
10_1101-2021_01_07_425794	240	3	The	the	DT
10_1101-2021_01_07_425794	240	4	copyright	copyright	NN
10_1101-2021_01_07_425794	240	5	holder	holder	NN
10_1101-2021_01_07_425794	240	6	for	for	IN
10_1101-2021_01_07_425794	240	7	this	this	DT
10_1101-2021_01_07_425794	240	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	240	9	version	version	NN
10_1101-2021_01_07_425794	240	10	posted	post	VBD
10_1101-2021_01_07_425794	240	11	January	January	NNP
10_1101-2021_01_07_425794	240	12	8	8	CD
10_1101-2021_01_07_425794	240	13	,	,	,
10_1101-2021_01_07_425794	240	14	2021	2021	CD
10_1101-2021_01_07_425794	240	15	.	.	.
10_1101-2021_01_07_425794	240	16	;	;	:
10_1101-2021_01_07_425794	240	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	240	18	:	:	:
10_1101-2021_01_07_425794	240	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	240	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	240	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	240	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	240	23	4	4	CD
10_1101-2021_01_07_425794	240	24	DISCUSSION	DISCUSSION	NNP
10_1101-2021_01_07_425794	240	25	The	the	DT
10_1101-2021_01_07_425794	240	26	RNA	RNA	NNP
10_1101-2021_01_07_425794	240	27	-	-	HYPH
10_1101-2021_01_07_425794	240	28	seq	seq	NN
10_1101-2021_01_07_425794	240	29	technique	technique	NN
10_1101-2021_01_07_425794	240	30	is	be	VBZ
10_1101-2021_01_07_425794	240	31	currently	currently	RB
10_1101-2021_01_07_425794	240	32	routinely	routinely	RB
10_1101-2021_01_07_425794	240	33	used	use	VBN
10_1101-2021_01_07_425794	240	34	for	for	IN
10_1101-2021_01_07_425794	240	35	genome	genome	NN
10_1101-2021_01_07_425794	240	36	-	-	HYPH
10_1101-2021_01_07_425794	240	37	wide	wide	JJ
10_1101-2021_01_07_425794	240	38	profiling	profiling	NN
10_1101-2021_01_07_425794	240	39	of	of	IN
10_1101-2021_01_07_425794	240	40	gene	gene	NN
10_1101-2021_01_07_425794	240	41	expression	expression	NN
10_1101-2021_01_07_425794	240	42	in	in	IN
10_1101-2021_01_07_425794	240	43	the	the	DT
10_1101-2021_01_07_425794	240	44	biomedical	biomedical	JJ
10_1101-2021_01_07_425794	240	45	research	research	NN
10_1101-2021_01_07_425794	240	46	field	field	NN
10_1101-2021_01_07_425794	240	47	.	.	.
10_1101-2021_01_07_425794	241	1	The	the	DT
10_1101-2021_01_07_425794	241	2	analysis	analysis	NN
10_1101-2021_01_07_425794	241	3	of	of	IN
10_1101-2021_01_07_425794	241	4	RNA	RNA	NNP
10_1101-2021_01_07_425794	241	5	-	-	HYPH
10_1101-2021_01_07_425794	241	6	seq	seq	NN
10_1101-2021_01_07_425794	241	7	data	data	NN
10_1101-2021_01_07_425794	241	8	relies	rely	VBZ
10_1101-2021_01_07_425794	241	9	on	on	IN
10_1101-2021_01_07_425794	241	10	the	the	DT
10_1101-2021_01_07_425794	241	11	accurate	accurate	JJ
10_1101-2021_01_07_425794	241	12	annotation	annotation	NN
10_1101-2021_01_07_425794	241	13	of	of	IN
10_1101-2021_01_07_425794	241	14	genes	gene	NNS
10_1101-2021_01_07_425794	241	15	so	so	IN
10_1101-2021_01_07_425794	241	16	that	that	IN
10_1101-2021_01_07_425794	241	17	expression	expression	NN
10_1101-2021_01_07_425794	241	18	levels	level	NNS
10_1101-2021_01_07_425794	241	19	of	of	IN
10_1101-2021_01_07_425794	241	20	genes	gene	NNS
10_1101-2021_01_07_425794	241	21	can	can	MD
10_1101-2021_01_07_425794	241	22	be	be	VB
10_1101-2021_01_07_425794	241	23	accurately	accurately	RB
10_1101-2021_01_07_425794	241	24	and	and	CC
10_1101-2021_01_07_425794	241	25	re-	re-	RB
10_1101-2021_01_07_425794	241	26	liably	liably	RB
10_1101-2021_01_07_425794	241	27	quantified	quantify	VBN
10_1101-2021_01_07_425794	241	28	.	.	.
10_1101-2021_01_07_425794	242	1	There	there	EX
10_1101-2021_01_07_425794	242	2	are	be	VBP
10_1101-2021_01_07_425794	242	3	several	several	JJ
10_1101-2021_01_07_425794	242	4	major	major	JJ
10_1101-2021_01_07_425794	242	5	gene	gene	NN
10_1101-2021_01_07_425794	242	6	annotation	annotation	NN
10_1101-2021_01_07_425794	242	7	sources	source	NNS
10_1101-2021_01_07_425794	242	8	that	that	WDT
10_1101-2021_01_07_425794	242	9	have	have	VBP
10_1101-2021_01_07_425794	242	10	been	be	VBN
10_1101-2021_01_07_425794	242	11	widely	widely	RB
10_1101-2021_01_07_425794	242	12	adopted	adopt	VBN
10_1101-2021_01_07_425794	242	13	in	in	IN
10_1101-2021_01_07_425794	242	14	the	the	DT
10_1101-2021_01_07_425794	242	15	field	field	NN
10_1101-2021_01_07_425794	242	16	such	such	JJ
10_1101-2021_01_07_425794	242	17	as	as	IN
10_1101-2021_01_07_425794	242	18	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	242	19	and	and	CC
10_1101-2021_01_07_425794	242	20	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	242	21	annotations	annotation	NNS
10_1101-2021_01_07_425794	242	22	.	.	.
10_1101-2021_01_07_425794	243	1	The	the	DT
10_1101-2021_01_07_425794	243	2	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	243	3	and	and	CC
10_1101-2021_01_07_425794	243	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	243	5	annotations	annotation	NNS
10_1101-2021_01_07_425794	243	6	have	have	VBP
10_1101-2021_01_07_425794	243	7	been	be	VBN
10_1101-2021_01_07_425794	243	8	well	well	RB
10_1101-2021_01_07_425794	243	9	maintained	maintain	VBN
10_1101-2021_01_07_425794	243	10	and	and	CC
10_1101-2021_01_07_425794	243	11	under	under	IN
10_1101-2021_01_07_425794	243	12	continuous	continuous	JJ
10_1101-2021_01_07_425794	243	13	development	development	NN
10_1101-2021_01_07_425794	243	14	.	.	.
10_1101-2021_01_07_425794	244	1	In	in	IN
10_1101-2021_01_07_425794	244	2	particular	particular	JJ
10_1101-2021_01_07_425794	244	3	,	,	,
10_1101-2021_01_07_425794	244	4	new	new	JJ
10_1101-2021_01_07_425794	244	5	gene	gene	NN
10_1101-2021_01_07_425794	244	6	information	information	NN
10_1101-2021_01_07_425794	244	7	collected	collect	VBN
10_1101-2021_01_07_425794	244	8	from	from	IN
10_1101-2021_01_07_425794	244	9	the	the	DT
10_1101-2021_01_07_425794	244	10	next	next	JJ
10_1101-2021_01_07_425794	244	11	-	-	HYPH
10_1101-2021_01_07_425794	244	12	generation	generation	NN
10_1101-2021_01_07_425794	244	13	sequencing	sequencing	NN
10_1101-2021_01_07_425794	244	14	technologies	technology	NNS
10_1101-2021_01_07_425794	244	15	,	,	,
10_1101-2021_01_07_425794	244	16	such	such	JJ
10_1101-2021_01_07_425794	244	17	as	as	IN
10_1101-2021_01_07_425794	244	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	244	19	-	-	HYPH
10_1101-2021_01_07_425794	244	20	seq	seq	NNP
10_1101-2021_01_07_425794	244	21	,	,	,
10_1101-2021_01_07_425794	244	22	has	have	VBZ
10_1101-2021_01_07_425794	244	23	been	be	VBN
10_1101-2021_01_07_425794	244	24	incorporated	incorporate	VBN
10_1101-2021_01_07_425794	244	25	into	into	IN
10_1101-2021_01_07_425794	244	26	the	the	DT
10_1101-2021_01_07_425794	244	27	expansion	expansion	NN
10_1101-2021_01_07_425794	244	28	of	of	IN
10_1101-2021_01_07_425794	244	29	these	these	DT
10_1101-2021_01_07_425794	244	30	annotations	annotation	NNS
10_1101-2021_01_07_425794	244	31	in	in	IN
10_1101-2021_01_07_425794	244	32	recent	recent	JJ
10_1101-2021_01_07_425794	244	33	years	year	NNS
10_1101-2021_01_07_425794	244	34	.	.	.
10_1101-2021_01_07_425794	245	1	However	however	RB
10_1101-2021_01_07_425794	245	2	,	,	,
10_1101-2021_01_07_425794	245	3	differences	difference	NNS
10_1101-2021_01_07_425794	245	4	between	between	IN
10_1101-2021_01_07_425794	245	5	these	these	DT
10_1101-2021_01_07_425794	245	6	annotations	annotation	NNS
10_1101-2021_01_07_425794	245	7	have	have	VBP
10_1101-2021_01_07_425794	245	8	raised	raise	VBN
10_1101-2021_01_07_425794	245	9	concerns	concern	NNS
10_1101-2021_01_07_425794	245	10	over	over	IN
10_1101-2021_01_07_425794	245	11	the	the	DT
10_1101-2021_01_07_425794	245	12	quality	quality	NN
10_1101-2021_01_07_425794	245	13	and	and	CC
10_1101-2021_01_07_425794	245	14	reproducibility	reproducibility	NN
10_1101-2021_01_07_425794	245	15	of	of	IN
10_1101-2021_01_07_425794	245	16	RNA	RNA	NNP
10_1101-2021_01_07_425794	245	17	-	-	HYPH
10_1101-2021_01_07_425794	245	18	seq	seq	NN
10_1101-2021_01_07_425794	245	19	data	data	NN
10_1101-2021_01_07_425794	245	20	analyses	analysis	NNS
10_1101-2021_01_07_425794	245	21	.	.	.
10_1101-2021_01_07_425794	246	1	There	there	EX
10_1101-2021_01_07_425794	246	2	are	be	VBP
10_1101-2021_01_07_425794	246	3	particularly	particularly	RB
10_1101-2021_01_07_425794	246	4	concerns	concern	NNS
10_1101-2021_01_07_425794	246	5	regarding	regard	VBG
10_1101-2021_01_07_425794	246	6	the	the	DT
10_1101-2021_01_07_425794	246	7	accuracy	accuracy	NN
10_1101-2021_01_07_425794	246	8	of	of	IN
10_1101-2021_01_07_425794	246	9	new	new	JJ
10_1101-2021_01_07_425794	246	10	gene	gene	NN
10_1101-2021_01_07_425794	246	11	annotations	annotation	NNS
10_1101-2021_01_07_425794	246	12	generated	generate	VBN
10_1101-2021_01_07_425794	246	13	from	from	IN
10_1101-2021_01_07_425794	246	14	the	the	DT
10_1101-2021_01_07_425794	246	15	use	use	NN
10_1101-2021_01_07_425794	246	16	of	of	IN
10_1101-2021_01_07_425794	246	17	the	the	DT
10_1101-2021_01_07_425794	246	18	sequencing	sequence	VBG
10_1101-2021_01_07_425794	246	19	tech-	tech-	JJ
10_1101-2021_01_07_425794	246	20	nologies	nologie	NNS
10_1101-2021_01_07_425794	246	21	,	,	,
10_1101-2021_01_07_425794	246	22	due	due	JJ
10_1101-2021_01_07_425794	246	23	to	to	IN
10_1101-2021_01_07_425794	246	24	known	know	VBN
10_1101-2021_01_07_425794	246	25	errors	error	NNS
10_1101-2021_01_07_425794	246	26	in	in	IN
10_1101-2021_01_07_425794	246	27	the	the	DT
10_1101-2021_01_07_425794	246	28	generation	generation	NN
10_1101-2021_01_07_425794	246	29	and	and	CC
10_1101-2021_01_07_425794	246	30	analysis	analysis	NN
10_1101-2021_01_07_425794	246	31	of	of	IN
10_1101-2021_01_07_425794	246	32	the	the	DT
10_1101-2021_01_07_425794	246	33	sequencing	sequencing	NN
10_1101-2021_01_07_425794	246	34	data	datum	NNS
10_1101-2021_01_07_425794	246	35	.	.	.
10_1101-2021_01_07_425794	247	1	To	to	TO
10_1101-2021_01_07_425794	247	2	address	address	VB
10_1101-2021_01_07_425794	247	3	these	these	DT
10_1101-2021_01_07_425794	247	4	concerns	concern	NNS
10_1101-2021_01_07_425794	247	5	,	,	,
10_1101-2021_01_07_425794	247	6	in	in	IN
10_1101-2021_01_07_425794	247	7	this	this	DT
10_1101-2021_01_07_425794	247	8	study	study	NN
10_1101-2021_01_07_425794	247	9	we	-PRON-	PRP
10_1101-2021_01_07_425794	247	10	systematically	systematically	RB
10_1101-2021_01_07_425794	247	11	assessed	assess	VBD
10_1101-2021_01_07_425794	247	12	the	the	DT
10_1101-2021_01_07_425794	247	13	differences	difference	NNS
10_1101-2021_01_07_425794	247	14	in	in	IN
10_1101-2021_01_07_425794	247	15	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	247	16	seq	seq	NN
10_1101-2021_01_07_425794	247	17	quantification	quantification	NN
10_1101-2021_01_07_425794	247	18	results	result	NNS
10_1101-2021_01_07_425794	247	19	attributed	attribute	VBN
10_1101-2021_01_07_425794	247	20	to	to	IN
10_1101-2021_01_07_425794	247	21	the	the	DT
10_1101-2021_01_07_425794	247	22	gene	gene	NN
10_1101-2021_01_07_425794	247	23	annotation	annotation	NN
10_1101-2021_01_07_425794	247	24	discrepancy	discrepancy	NN
10_1101-2021_01_07_425794	247	25	.	.	.
10_1101-2021_01_07_425794	248	1	Annotations	annotation	NNS
10_1101-2021_01_07_425794	248	2	being	be	VBG
10_1101-2021_01_07_425794	248	3	evaluated	evaluate	VBN
10_1101-2021_01_07_425794	248	4	in	in	IN
10_1101-2021_01_07_425794	248	5	this	this	DT
10_1101-2021_01_07_425794	248	6	study	study	NN
10_1101-2021_01_07_425794	248	7	included	include	VBD
10_1101-2021_01_07_425794	248	8	recent	recent	JJ
10_1101-2021_01_07_425794	248	9	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	248	10	and	and	CC
10_1101-2021_01_07_425794	248	11	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	248	12	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	248	13	annotations	annotation	NNS
10_1101-2021_01_07_425794	248	14	and	and	CC
10_1101-2021_01_07_425794	248	15	also	also	RB
10_1101-2021_01_07_425794	248	16	an	an	DT
10_1101-2021_01_07_425794	248	17	older	old	JJR
10_1101-2021_01_07_425794	248	18	version	version	NN
10_1101-2021_01_07_425794	248	19	of	of	IN
10_1101-2021_01_07_425794	248	20	the	the	DT
10_1101-2021_01_07_425794	248	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	248	22	annotation	annotation	NN
10_1101-2021_01_07_425794	248	23	.	.	.
10_1101-2021_01_07_425794	249	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	249	2	compared	compare	VBD
10_1101-2021_01_07_425794	249	3	the	the	DT
10_1101-2021_01_07_425794	249	4	recent	recent	JJ
10_1101-2021_01_07_425794	249	5	and	and	CC
10_1101-2021_01_07_425794	249	6	old	old	JJ
10_1101-2021_01_07_425794	249	7	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	249	8	annotations	annotation	NNS
10_1101-2021_01_07_425794	249	9	to	to	TO
10_1101-2021_01_07_425794	249	10	assess	assess	VB
10_1101-2021_01_07_425794	249	11	the	the	DT
10_1101-2021_01_07_425794	249	12	quality	quality	NN
10_1101-2021_01_07_425794	249	13	of	of	IN
10_1101-2021_01_07_425794	249	14	the	the	DT
10_1101-2021_01_07_425794	249	15	new	new	JJ
10_1101-2021_01_07_425794	249	16	annotations	annotation	NNS
10_1101-2021_01_07_425794	249	17	that	that	WDT
10_1101-2021_01_07_425794	249	18	were	be	VBD
10_1101-2021_01_07_425794	249	19	added	add	VBN
10_1101-2021_01_07_425794	249	20	when	when	WRB
10_1101-2021_01_07_425794	249	21	the	the	DT
10_1101-2021_01_07_425794	249	22	sequencing	sequencing	NN
10_1101-2021_01_07_425794	249	23	technology	technology	NN
10_1101-2021_01_07_425794	249	24	was	be	VBD
10_1101-2021_01_07_425794	249	25	utilized	utilize	VBN
10_1101-2021_01_07_425794	249	26	at	at	IN
10_1101-2021_01_07_425794	249	27	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	249	28	for	for	IN
10_1101-2021_01_07_425794	249	29	curating	curate	VBG
10_1101-2021_01_07_425794	249	30	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	249	31	gene	gene	NN
10_1101-2021_01_07_425794	249	32	annotations	annotation	NNS
10_1101-2021_01_07_425794	249	33	.	.	.
10_1101-2021_01_07_425794	250	1	Although	although	IN
10_1101-2021_01_07_425794	250	2	the	the	DT
10_1101-2021_01_07_425794	250	3	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	250	4	annotation	annotation	NN
10_1101-2021_01_07_425794	250	5	contains	contain	VBZ
10_1101-2021_01_07_425794	250	6	significantly	significantly	RB
10_1101-2021_01_07_425794	250	7	more	more	JJR
10_1101-2021_01_07_425794	250	8	genes	gene	NNS
10_1101-2021_01_07_425794	250	9	than	than	IN
10_1101-2021_01_07_425794	250	10	both	both	DT
10_1101-2021_01_07_425794	250	11	the	the	DT
10_1101-2021_01_07_425794	250	12	recent	recent	JJ
10_1101-2021_01_07_425794	250	13	and	and	CC
10_1101-2021_01_07_425794	250	14	old	old	JJ
10_1101-2021_01_07_425794	250	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	250	16	annotations	annotation	NNS
10_1101-2021_01_07_425794	250	17	,	,	,
10_1101-2021_01_07_425794	250	18	it	-PRON-	PRP
10_1101-2021_01_07_425794	250	19	was	be	VBD
10_1101-2021_01_07_425794	250	20	also	also	RB
10_1101-2021_01_07_425794	250	21	found	find	VBN
10_1101-2021_01_07_425794	250	22	to	to	TO
10_1101-2021_01_07_425794	250	23	have	have	VB
10_1101-2021_01_07_425794	250	24	a	a	DT
10_1101-2021_01_07_425794	250	25	much	much	RB
10_1101-2021_01_07_425794	250	26	higher	high	JJR
10_1101-2021_01_07_425794	250	27	proportion	proportion	NN
10_1101-2021_01_07_425794	250	28	of	of	IN
10_1101-2021_01_07_425794	250	29	short	short	JJ
10_1101-2021_01_07_425794	250	30	genes	gene	NNS
10_1101-2021_01_07_425794	250	31	.	.	.
10_1101-2021_01_07_425794	251	1	Interestingly	interestingly	RB
10_1101-2021_01_07_425794	251	2	,	,	,
10_1101-2021_01_07_425794	251	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	251	4	found	find	VBD
10_1101-2021_01_07_425794	251	5	that	that	IN
10_1101-2021_01_07_425794	251	6	a	a	DT
10_1101-2021_01_07_425794	251	7	much	much	RB
10_1101-2021_01_07_425794	251	8	higher	high	JJR
10_1101-2021_01_07_425794	251	9	fraction	fraction	NN
10_1101-2021_01_07_425794	251	10	of	of	IN
10_1101-2021_01_07_425794	251	11	these	these	DT
10_1101-2021_01_07_425794	251	12	short	short	JJ
10_1101-2021_01_07_425794	251	13	genes	gene	NNS
10_1101-2021_01_07_425794	251	14	in	in	IN
10_1101-2021_01_07_425794	251	15	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	251	16	were	be	VBD
10_1101-2021_01_07_425794	251	17	filtered	filter	VBN
10_1101-2021_01_07_425794	251	18	out	out	RP
10_1101-2021_01_07_425794	251	19	due	due	IN
10_1101-2021_01_07_425794	251	20	to	to	IN
10_1101-2021_01_07_425794	251	21	low	low	JJ
10_1101-2021_01_07_425794	251	22	or	or	CC
10_1101-2021_01_07_425794	251	23	no	no	DT
10_1101-2021_01_07_425794	251	24	expression	expression	NN
10_1101-2021_01_07_425794	251	25	in	in	IN
10_1101-2021_01_07_425794	251	26	the	the	DT
10_1101-2021_01_07_425794	251	27	analysis	analysis	NN
10_1101-2021_01_07_425794	251	28	of	of	IN
10_1101-2021_01_07_425794	251	29	the	the	DT
10_1101-2021_01_07_425794	251	30	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	251	31	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	251	32	seq	seq	NN
10_1101-2021_01_07_425794	251	33	dataset	dataset	NN
10_1101-2021_01_07_425794	251	34	,	,	,
10_1101-2021_01_07_425794	251	35	compared	compare	VBN
10_1101-2021_01_07_425794	251	36	to	to	IN
10_1101-2021_01_07_425794	251	37	the	the	DT
10_1101-2021_01_07_425794	251	38	short	short	JJ
10_1101-2021_01_07_425794	251	39	genes	gene	NNS
10_1101-2021_01_07_425794	251	40	included	include	VBN
10_1101-2021_01_07_425794	251	41	in	in	IN
10_1101-2021_01_07_425794	251	42	the	the	DT
10_1101-2021_01_07_425794	251	43	two	two	CD
10_1101-2021_01_07_425794	251	44	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	251	45	annotations	annotation	NNS
10_1101-2021_01_07_425794	251	46	.	.	.
10_1101-2021_01_07_425794	252	1	The	the	DT
10_1101-2021_01_07_425794	252	2	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	252	3	RNA	RNA	NNP
10_1101-2021_01_07_425794	252	4	-	-	HYPH
10_1101-2021_01_07_425794	252	5	seq	seq	NN
10_1101-2021_01_07_425794	252	6	data	datum	NNS
10_1101-2021_01_07_425794	252	7	is	be	VBZ
10_1101-2021_01_07_425794	252	8	a	a	DT
10_1101-2021_01_07_425794	252	9	widely	widely	RB
10_1101-2021_01_07_425794	252	10	used	use	VBN
10_1101-2021_01_07_425794	252	11	benchmark	benchmark	JJ
10_1101-2021_01_07_425794	252	12	dataset	dataset	NN
10_1101-2021_01_07_425794	252	13	including	include	VBG
10_1101-2021_01_07_425794	252	14	the	the	DT
10_1101-2021_01_07_425794	252	15	Human	Human	NNP
10_1101-2021_01_07_425794	252	16	Brain	Brain	NNP
10_1101-2021_01_07_425794	252	17	Reference	Reference	NNP
10_1101-2021_01_07_425794	252	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	252	19	and	and	CC
10_1101-2021_01_07_425794	252	20	Universal	Universal	NNP
10_1101-2021_01_07_425794	252	21	Human	Human	NNP
10_1101-2021_01_07_425794	252	22	Reference	Reference	NNP
10_1101-2021_01_07_425794	252	23	RNA	RNA	NNP
10_1101-2021_01_07_425794	252	24	samples	sample	NNS
10_1101-2021_01_07_425794	252	25	,	,	,
10_1101-2021_01_07_425794	252	26	in	in	IN
10_1101-2021_01_07_425794	252	27	which	which	WDT
10_1101-2021_01_07_425794	252	28	a	a	DT
10_1101-2021_01_07_425794	252	29	very	very	RB
10_1101-2021_01_07_425794	252	30	large	large	JJ
10_1101-2021_01_07_425794	252	31	number	number	NN
10_1101-2021_01_07_425794	252	32	of	of	IN
10_1101-2021_01_07_425794	252	33	gene	gene	NN
10_1101-2021_01_07_425794	252	34	expressed	express	VBD
10_1101-2021_01_07_425794	252	35	making	make	VBG
10_1101-2021_01_07_425794	252	36	the	the	DT
10_1101-2021_01_07_425794	252	37	entire	entire	JJ
10_1101-2021_01_07_425794	252	38	human	human	NN
10_1101-2021_01_07_425794	252	39	transcriptome	transcriptome	RBS
10_1101-2021_01_07_425794	252	40	well	well	RB
10_1101-2021_01_07_425794	252	41	covered	cover	VBN
10_1101-2021_01_07_425794	252	42	.	.	.
10_1101-2021_01_07_425794	253	1	The	the	DT
10_1101-2021_01_07_425794	253	2	use	use	NN
10_1101-2021_01_07_425794	253	3	of	of	IN
10_1101-2021_01_07_425794	253	4	the	the	DT
10_1101-2021_01_07_425794	253	5	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	253	6	-	-	HYPH
10_1101-2021_01_07_425794	253	7	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	253	8	annotation	annotation	NN
10_1101-2021_01_07_425794	253	9	(	(	-LRB-
10_1101-2021_01_07_425794	253	10	the	the	DT
10_1101-2021_01_07_425794	253	11	older	old	JJR
10_1101-2021_01_07_425794	253	12	version	version	NN
10_1101-2021_01_07_425794	253	13	of	of	IN
10_1101-2021_01_07_425794	253	14	the	the	DT
10_1101-2021_01_07_425794	253	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	253	16	anno-	anno-	JJ
10_1101-2021_01_07_425794	253	17	tation	tation	NN
10_1101-2021_01_07_425794	253	18	used	use	VBN
10_1101-2021_01_07_425794	253	19	in	in	IN
10_1101-2021_01_07_425794	253	20	this	this	DT
10_1101-2021_01_07_425794	253	21	study	study	NN
10_1101-2021_01_07_425794	253	22	)	)	-RRB-
10_1101-2021_01_07_425794	253	23	has	have	VBZ
10_1101-2021_01_07_425794	253	24	led	lead	VBN
10_1101-2021_01_07_425794	253	25	to	to	IN
10_1101-2021_01_07_425794	253	26	substantially	substantially	RB
10_1101-2021_01_07_425794	253	27	more	more	JJR
10_1101-2021_01_07_425794	253	28	fragments	fragment	NNS
10_1101-2021_01_07_425794	253	29	being	be	VBG
10_1101-2021_01_07_425794	253	30	successfully	successfully	RB
10_1101-2021_01_07_425794	253	31	counted	count	VBN
10_1101-2021_01_07_425794	253	32	to	to	IN
10_1101-2021_01_07_425794	253	33	genes	gene	NNS
10_1101-2021_01_07_425794	253	34	than	than	IN
10_1101-2021_01_07_425794	253	35	the	the	DT
10_1101-2021_01_07_425794	253	36	use	use	NN
10_1101-2021_01_07_425794	253	37	of	of	IN
10_1101-2021_01_07_425794	253	38	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	253	39	-	-	HYPH
10_1101-2021_01_07_425794	253	40	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	253	41	(	(	-LRB-
10_1101-2021_01_07_425794	253	42	the	the	DT
10_1101-2021_01_07_425794	253	43	recent	recent	JJ
10_1101-2021_01_07_425794	253	44	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	253	45	annotation	annotation	NN
10_1101-2021_01_07_425794	253	46	used	use	VBN
10_1101-2021_01_07_425794	253	47	in	in	IN
10_1101-2021_01_07_425794	253	48	this	this	DT
10_1101-2021_01_07_425794	253	49	study	study	NN
10_1101-2021_01_07_425794	253	50	)	)	-RRB-
10_1101-2021_01_07_425794	253	51	or	or	CC
10_1101-2021_01_07_425794	253	52	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	253	53	annotations	annotation	NNS
10_1101-2021_01_07_425794	253	54	.	.	.
10_1101-2021_01_07_425794	254	1	A	a	DT
10_1101-2021_01_07_425794	254	2	detailed	detailed	JJ
10_1101-2021_01_07_425794	254	3	investigation	investigation	NN
10_1101-2021_01_07_425794	254	4	revealed	reveal	VBD
10_1101-2021_01_07_425794	254	5	that	that	IN
10_1101-2021_01_07_425794	254	6	this	this	DT
10_1101-2021_01_07_425794	254	7	was	be	VBD
10_1101-2021_01_07_425794	254	8	be-	be-	XX
10_1101-2021_01_07_425794	254	9	cause	cause	NN
10_1101-2021_01_07_425794	254	10	(	(	-LRB-
10_1101-2021_01_07_425794	254	11	a	a	LS
10_1101-2021_01_07_425794	254	12	)	)	-RRB-
10_1101-2021_01_07_425794	254	13	there	there	EX
10_1101-2021_01_07_425794	254	14	are	be	VBP
10_1101-2021_01_07_425794	254	15	less	less	RBR
10_1101-2021_01_07_425794	254	16	overlapping	overlap	VBG
10_1101-2021_01_07_425794	254	17	between	between	IN
10_1101-2021_01_07_425794	254	18	genes	gene	NNS
10_1101-2021_01_07_425794	254	19	in	in	IN
10_1101-2021_01_07_425794	254	20	the	the	DT
10_1101-2021_01_07_425794	254	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	254	22	-	-	HYPH
10_1101-2021_01_07_425794	254	23	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	254	24	annotation	annotation	NN
10_1101-2021_01_07_425794	254	25	leading	lead	VBG
10_1101-2021_01_07_425794	254	26	to	to	IN
10_1101-2021_01_07_425794	254	27	less	less	RBR
10_1101-2021_01_07_425794	254	28	read	read	VB
10_1101-2021_01_07_425794	254	29	assignment	assignment	JJ
10_1101-2021_01_07_425794	254	30	ambiguity	ambiguity	NN
10_1101-2021_01_07_425794	254	31	and	and	CC
10_1101-2021_01_07_425794	254	32	(	(	-LRB-
10_1101-2021_01_07_425794	254	33	b	b	LS
10_1101-2021_01_07_425794	254	34	)	)	-RRB-
10_1101-2021_01_07_425794	254	35	the	the	DT
10_1101-2021_01_07_425794	254	36	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	254	37	-	-	HYPH
10_1101-2021_01_07_425794	254	38	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	254	39	annotation	annotation	NN
10_1101-2021_01_07_425794	254	40	con-	con-	NN
10_1101-2021_01_07_425794	254	41	tains	tain	VBZ
10_1101-2021_01_07_425794	254	42	more	more	JJR
10_1101-2021_01_07_425794	254	43	genes	gene	NNS
10_1101-2021_01_07_425794	254	44	that	that	WDT
10_1101-2021_01_07_425794	254	45	are	be	VBP
10_1101-2021_01_07_425794	254	46	compatible	compatible	JJ
10_1101-2021_01_07_425794	254	47	with	with	IN
10_1101-2021_01_07_425794	254	48	mapped	map	VBN
10_1101-2021_01_07_425794	254	49	fragments	fragment	NNS
10_1101-2021_01_07_425794	254	50	,	,	,
10_1101-2021_01_07_425794	254	51	despite	despite	IN
10_1101-2021_01_07_425794	254	52	the	the	DT
10_1101-2021_01_07_425794	254	53	transcriptome	transcriptome	DT
10_1101-2021_01_07_425794	254	54	represented	represent	VBN
10_1101-2021_01_07_425794	254	55	by	by	IN
10_1101-2021_01_07_425794	254	56	this	this	DT
10_1101-2021_01_07_425794	254	57	annotation	annotation	NN
10_1101-2021_01_07_425794	254	58	is	be	VBZ
10_1101-2021_01_07_425794	254	59	much	much	RB
10_1101-2021_01_07_425794	254	60	smaller	small	JJR
10_1101-2021_01_07_425794	254	61	than	than	IN
10_1101-2021_01_07_425794	254	62	those	those	DT
10_1101-2021_01_07_425794	254	63	represented	represent	VBN
10_1101-2021_01_07_425794	254	64	by	by	IN
10_1101-2021_01_07_425794	254	65	the	the	DT
10_1101-2021_01_07_425794	254	66	RefSeq-	RefSeq-	NNP
10_1101-2021_01_07_425794	254	67	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	254	68	and	and	CC
10_1101-2021_01_07_425794	254	69	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	254	70	annotations	annotation	NNS
10_1101-2021_01_07_425794	254	71	.	.	.
10_1101-2021_01_07_425794	255	1	Moreover	moreover	RB
10_1101-2021_01_07_425794	255	2	,	,	,
10_1101-2021_01_07_425794	255	3	the	the	DT
10_1101-2021_01_07_425794	255	4	quantification	quantification	NN
10_1101-2021_01_07_425794	255	5	data	datum	NNS
10_1101-2021_01_07_425794	255	6	obtained	obtain	VBN
10_1101-2021_01_07_425794	255	7	from	from	IN
10_1101-2021_01_07_425794	255	8	using	use	VBG
10_1101-2021_01_07_425794	255	9	19	19	CD
10_1101-2021_01_07_425794	255	10	.CC	.CC	,
10_1101-2021_01_07_425794	255	11	-	-	HYPH
10_1101-2021_01_07_425794	255	12	BY	by	IN
10_1101-2021_01_07_425794	255	13	-	-	HYPH
10_1101-2021_01_07_425794	255	14	NC	NC	NNP
10_1101-2021_01_07_425794	255	15	-	-	HYPH
10_1101-2021_01_07_425794	255	16	ND	ND	NNP
10_1101-2021_01_07_425794	255	17	4.0	4.0	CD
10_1101-2021_01_07_425794	255	18	International	international	JJ
10_1101-2021_01_07_425794	255	19	licensemade	licensemade	NN
10_1101-2021_01_07_425794	255	20	available	available	JJ
10_1101-2021_01_07_425794	255	21	under	under	IN
10_1101-2021_01_07_425794	255	22	a	a	DT
10_1101-2021_01_07_425794	255	23	(	(	-LRB-
10_1101-2021_01_07_425794	255	24	which	which	WDT
10_1101-2021_01_07_425794	255	25	was	be	VBD
10_1101-2021_01_07_425794	255	26	not	not	RB
10_1101-2021_01_07_425794	255	27	certified	certify	VBN
10_1101-2021_01_07_425794	255	28	by	by	IN
10_1101-2021_01_07_425794	255	29	peer	peer	NN
10_1101-2021_01_07_425794	255	30	review	review	NN
10_1101-2021_01_07_425794	255	31	)	)	-RRB-
10_1101-2021_01_07_425794	255	32	is	be	VBZ
10_1101-2021_01_07_425794	255	33	the	the	DT
10_1101-2021_01_07_425794	255	34	author	author	NN
10_1101-2021_01_07_425794	255	35	/	/	SYM
10_1101-2021_01_07_425794	255	36	funder	funder	NN
10_1101-2021_01_07_425794	255	37	,	,	,
10_1101-2021_01_07_425794	255	38	who	who	WP
10_1101-2021_01_07_425794	255	39	has	have	VBZ
10_1101-2021_01_07_425794	255	40	granted	grant	VBN
10_1101-2021_01_07_425794	255	41	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	255	42	a	a	DT
10_1101-2021_01_07_425794	255	43	license	license	NN
10_1101-2021_01_07_425794	255	44	to	to	TO
10_1101-2021_01_07_425794	255	45	display	display	VB
10_1101-2021_01_07_425794	255	46	the	the	DT
10_1101-2021_01_07_425794	255	47	preprint	preprint	NN
10_1101-2021_01_07_425794	255	48	in	in	IN
10_1101-2021_01_07_425794	255	49	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	255	50	.	.	.
10_1101-2021_01_07_425794	256	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	256	2	is	be	VBZ
10_1101-2021_01_07_425794	256	3	The	the	DT
10_1101-2021_01_07_425794	256	4	copyright	copyright	NN
10_1101-2021_01_07_425794	256	5	holder	holder	NN
10_1101-2021_01_07_425794	256	6	for	for	IN
10_1101-2021_01_07_425794	256	7	this	this	DT
10_1101-2021_01_07_425794	256	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	256	9	version	version	NN
10_1101-2021_01_07_425794	256	10	posted	post	VBD
10_1101-2021_01_07_425794	256	11	January	January	NNP
10_1101-2021_01_07_425794	256	12	8	8	CD
10_1101-2021_01_07_425794	256	13	,	,	,
10_1101-2021_01_07_425794	256	14	2021	2021	CD
10_1101-2021_01_07_425794	256	15	.	.	.
10_1101-2021_01_07_425794	256	16	;	;	:
10_1101-2021_01_07_425794	256	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	256	18	:	:	:
10_1101-2021_01_07_425794	256	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	256	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	256	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	256	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	CD
10_1101-2021_01_07_425794	256	23	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	256	24	-	-	HYPH
10_1101-2021_01_07_425794	256	25	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	256	26	exhibited	exhibit	VBD
10_1101-2021_01_07_425794	256	27	desirable	desirable	JJ
10_1101-2021_01_07_425794	256	28	larger	large	JJR
10_1101-2021_01_07_425794	256	29	intensity	intensity	NN
10_1101-2021_01_07_425794	256	30	range	range	NN
10_1101-2021_01_07_425794	256	31	and	and	CC
10_1101-2021_01_07_425794	256	32	higher	high	JJR
10_1101-2021_01_07_425794	256	33	median	median	JJ
10_1101-2021_01_07_425794	256	34	expression	expression	NN
10_1101-2021_01_07_425794	256	35	level	level	NN
10_1101-2021_01_07_425794	256	36	than	than	IN
10_1101-2021_01_07_425794	256	37	the	the	DT
10_1101-2021_01_07_425794	256	38	quantification	quantification	NN
10_1101-2021_01_07_425794	256	39	data	datum	NNS
10_1101-2021_01_07_425794	256	40	obtained	obtain	VBN
10_1101-2021_01_07_425794	256	41	from	from	IN
10_1101-2021_01_07_425794	256	42	using	use	VBG
10_1101-2021_01_07_425794	256	43	the	the	DT
10_1101-2021_01_07_425794	256	44	other	other	JJ
10_1101-2021_01_07_425794	256	45	two	two	CD
10_1101-2021_01_07_425794	256	46	annotations	annotation	NNS
10_1101-2021_01_07_425794	256	47	.	.	.
10_1101-2021_01_07_425794	257	1	The	the	DT
10_1101-2021_01_07_425794	257	2	evaluation	evaluation	NN
10_1101-2021_01_07_425794	257	3	of	of	IN
10_1101-2021_01_07_425794	257	4	quantification	quantification	NN
10_1101-2021_01_07_425794	257	5	accuracy	accuracy	NN
10_1101-2021_01_07_425794	257	6	from	from	IN
10_1101-2021_01_07_425794	257	7	using	use	VBG
10_1101-2021_01_07_425794	257	8	genome	genome	NN
10_1101-2021_01_07_425794	257	9	-	-	HYPH
10_1101-2021_01_07_425794	257	10	wide	wide	JJ
10_1101-2021_01_07_425794	257	11	titration	titration	NN
10_1101-2021_01_07_425794	257	12	mono-	mono-	NN
10_1101-2021_01_07_425794	257	13	tonicity	tonicity	NN
10_1101-2021_01_07_425794	257	14	truth	truth	NN
10_1101-2021_01_07_425794	257	15	built	build	VBN
10_1101-2021_01_07_425794	257	16	in	in	IN
10_1101-2021_01_07_425794	257	17	the	the	DT
10_1101-2021_01_07_425794	257	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	257	19	-	-	HYPH
10_1101-2021_01_07_425794	257	20	seq	seq	NN
10_1101-2021_01_07_425794	257	21	data	datum	NNS
10_1101-2021_01_07_425794	257	22	,	,	,
10_1101-2021_01_07_425794	257	23	the	the	DT
10_1101-2021_01_07_425794	257	24	TaqMan	TaqMan	NNP
10_1101-2021_01_07_425794	257	25	RT	RT	NNP
10_1101-2021_01_07_425794	257	26	-	-	HYPH
10_1101-2021_01_07_425794	257	27	PCR	PCR	NNP
10_1101-2021_01_07_425794	257	28	data	datum	NNS
10_1101-2021_01_07_425794	257	29	and	and	CC
10_1101-2021_01_07_425794	257	30	the	the	DT
10_1101-2021_01_07_425794	257	31	microarray	microarray	NNP
10_1101-2021_01_07_425794	257	32	data	datum	NNS
10_1101-2021_01_07_425794	257	33	,	,	,
10_1101-2021_01_07_425794	257	34	showed	show	VBD
10_1101-2021_01_07_425794	257	35	that	that	IN
10_1101-2021_01_07_425794	257	36	overall	overall	PDT
10_1101-2021_01_07_425794	257	37	the	the	DT
10_1101-2021_01_07_425794	257	38	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	257	39	-	-	HYPH
10_1101-2021_01_07_425794	257	40	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	257	41	annotation	annotation	NN
10_1101-2021_01_07_425794	257	42	yielded	yield	VBD
10_1101-2021_01_07_425794	257	43	better	well	JJR
10_1101-2021_01_07_425794	257	44	quantification	quantification	NN
10_1101-2021_01_07_425794	257	45	re-	re-	JJ
10_1101-2021_01_07_425794	257	46	sults	sult	NNS
10_1101-2021_01_07_425794	257	47	than	than	IN
10_1101-2021_01_07_425794	257	48	the	the	DT
10_1101-2021_01_07_425794	257	49	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	257	50	annotation	annotation	NN
10_1101-2021_01_07_425794	257	51	.	.	.
10_1101-2021_01_07_425794	258	1	This	this	DT
10_1101-2021_01_07_425794	258	2	may	may	MD
10_1101-2021_01_07_425794	258	3	not	not	RB
10_1101-2021_01_07_425794	258	4	be	be	VB
10_1101-2021_01_07_425794	258	5	surprising	surprising	JJ
10_1101-2021_01_07_425794	258	6	because	because	IN
10_1101-2021_01_07_425794	258	7	the	the	DT
10_1101-2021_01_07_425794	258	8	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	258	9	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	258	10	annotation	annotation	NN
10_1101-2021_01_07_425794	258	11	is	be	VBZ
10_1101-2021_01_07_425794	258	12	a	a	DT
10_1101-2021_01_07_425794	258	13	traditionally	traditionally	RB
10_1101-2021_01_07_425794	258	14	conservative	conservative	JJ
10_1101-2021_01_07_425794	258	15	annotation	annotation	NN
10_1101-2021_01_07_425794	258	16	that	that	WDT
10_1101-2021_01_07_425794	258	17	is	be	VBZ
10_1101-2021_01_07_425794	258	18	known	know	VBN
10_1101-2021_01_07_425794	258	19	to	to	TO
10_1101-2021_01_07_425794	258	20	be	be	VB
10_1101-2021_01_07_425794	258	21	highly	highly	RB
10_1101-2021_01_07_425794	258	22	accurate	accurate	JJ
10_1101-2021_01_07_425794	258	23	as	as	IN
10_1101-2021_01_07_425794	258	24	it	-PRON-	PRP
10_1101-2021_01_07_425794	258	25	uses	use	VBZ
10_1101-2021_01_07_425794	258	26	an	an	DT
10_1101-2021_01_07_425794	258	27	evidence	evidence	NN
10_1101-2021_01_07_425794	258	28	-	-	HYPH
10_1101-2021_01_07_425794	258	29	based	base	VBN
10_1101-2021_01_07_425794	258	30	approach	approach	NN
10_1101-2021_01_07_425794	258	31	to	to	IN
10_1101-2021_01_07_425794	258	32	annotate	annotate	JJ
10_1101-2021_01_07_425794	258	33	genes	gene	NNS
10_1101-2021_01_07_425794	258	34	.	.	.
10_1101-2021_01_07_425794	259	1	However	however	RB
10_1101-2021_01_07_425794	259	2	,	,	,
10_1101-2021_01_07_425794	259	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	259	4	also	also	RB
10_1101-2021_01_07_425794	259	5	found	find	VBD
10_1101-2021_01_07_425794	259	6	that	that	IN
10_1101-2021_01_07_425794	259	7	the	the	DT
10_1101-2021_01_07_425794	259	8	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	259	9	-	-	HYPH
10_1101-2021_01_07_425794	259	10	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	259	11	annotation	annotation	NN
10_1101-2021_01_07_425794	259	12	yielded	yield	VBD
10_1101-2021_01_07_425794	259	13	more	more	RBR
10_1101-2021_01_07_425794	259	14	accurate	accurate	JJ
10_1101-2021_01_07_425794	259	15	quantification	quantification	NN
10_1101-2021_01_07_425794	259	16	results	result	NNS
10_1101-2021_01_07_425794	259	17	than	than	IN
10_1101-2021_01_07_425794	259	18	the	the	DT
10_1101-2021_01_07_425794	259	19	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	259	20	-	-	HYPH
10_1101-2021_01_07_425794	259	21	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	259	22	annotation	annotation	NN
10_1101-2021_01_07_425794	259	23	in	in	IN
10_1101-2021_01_07_425794	259	24	almost	almost	RB
10_1101-2021_01_07_425794	259	25	all	all	PDT
10_1101-2021_01_07_425794	259	26	the	the	DT
10_1101-2021_01_07_425794	259	27	comparisons	comparison	NNS
10_1101-2021_01_07_425794	259	28	,	,	,
10_1101-2021_01_07_425794	259	29	which	which	WDT
10_1101-2021_01_07_425794	259	30	is	be	VBZ
10_1101-2021_01_07_425794	259	31	very	very	RB
10_1101-2021_01_07_425794	259	32	surprising	surprising	JJ
10_1101-2021_01_07_425794	259	33	.	.	.
10_1101-2021_01_07_425794	260	1	We	-PRON-	PRP
10_1101-2021_01_07_425794	260	2	suspect	suspect	VBP
10_1101-2021_01_07_425794	260	3	that	that	IN
10_1101-2021_01_07_425794	260	4	this	this	DT
10_1101-2021_01_07_425794	260	5	might	may	MD
10_1101-2021_01_07_425794	260	6	be	be	VB
10_1101-2021_01_07_425794	260	7	due	due	IN
10_1101-2021_01_07_425794	260	8	to	to	IN
10_1101-2021_01_07_425794	260	9	the	the	DT
10_1101-2021_01_07_425794	260	10	annotation	annotation	NN
10_1101-2021_01_07_425794	260	11	errors	error	NNS
10_1101-2021_01_07_425794	260	12	arising	arise	VBG
10_1101-2021_01_07_425794	260	13	from	from	IN
10_1101-2021_01_07_425794	260	14	the	the	DT
10_1101-2021_01_07_425794	260	15	sequencing	sequence	VBG
10_1101-2021_01_07_425794	260	16	data	datum	NNS
10_1101-2021_01_07_425794	260	17	recently	recently	RB
10_1101-2021_01_07_425794	260	18	utilized	utilize	VBN
10_1101-2021_01_07_425794	260	19	in	in	IN
10_1101-2021_01_07_425794	260	20	the	the	DT
10_1101-2021_01_07_425794	260	21	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	260	22	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	260	23	annotation	annotation	NN
10_1101-2021_01_07_425794	260	24	generation	generation	NN
10_1101-2021_01_07_425794	260	25	pipeline	pipeline	NN
10_1101-2021_01_07_425794	260	26	.	.	.
10_1101-2021_01_07_425794	261	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	261	2	was	be	VBD
10_1101-2021_01_07_425794	261	3	reported	report	VBN
10_1101-2021_01_07_425794	261	4	that	that	IN
10_1101-2021_01_07_425794	261	5	the	the	DT
10_1101-2021_01_07_425794	261	6	sequencing	sequencing	NN
10_1101-2021_01_07_425794	261	7	data	datum	NNS
10_1101-2021_01_07_425794	261	8	,	,	,
10_1101-2021_01_07_425794	261	9	including	include	VBG
10_1101-2021_01_07_425794	261	10	RNA	RNA	NNP
10_1101-2021_01_07_425794	261	11	-	-	HYPH
10_1101-2021_01_07_425794	261	12	seq	seq	NN
10_1101-2021_01_07_425794	261	13	data	datum	NNS
10_1101-2021_01_07_425794	261	14	and	and	CC
10_1101-2021_01_07_425794	261	15	epigenome	epigenome	JJ
10_1101-2021_01_07_425794	261	16	sequencing	sequencing	NN
10_1101-2021_01_07_425794	261	17	data	datum	NNS
10_1101-2021_01_07_425794	261	18	,	,	,
10_1101-2021_01_07_425794	261	19	started	start	VBD
10_1101-2021_01_07_425794	261	20	to	to	TO
10_1101-2021_01_07_425794	261	21	be	be	VB
10_1101-2021_01_07_425794	261	22	utilized	utilize	VBN
10_1101-2021_01_07_425794	261	23	by	by	IN
10_1101-2021_01_07_425794	261	24	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	261	25	for	for	IN
10_1101-2021_01_07_425794	261	26	curating	curate	VBG
10_1101-2021_01_07_425794	261	27	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	261	28	gene	gene	NN
10_1101-2021_01_07_425794	261	29	annotations	annotation	NNS
10_1101-2021_01_07_425794	261	30	in	in	IN
10_1101-2021_01_07_425794	261	31	around	around	IN
10_1101-2021_01_07_425794	261	32	2013	2013	CD
10_1101-2021_01_07_425794	261	33	[	[	-LRB-
10_1101-2021_01_07_425794	261	34	9	9	CD
10_1101-2021_01_07_425794	261	35	,	,	,
10_1101-2021_01_07_425794	261	36	27	27	CD
10_1101-2021_01_07_425794	261	37	]	]	-RRB-
10_1101-2021_01_07_425794	261	38	.	.	.
10_1101-2021_01_07_425794	262	1	Between	between	IN
10_1101-2021_01_07_425794	262	2	March	March	NNP
10_1101-2021_01_07_425794	262	3	2015	2015	CD
10_1101-2021_01_07_425794	262	4	and	and	CC
10_1101-2021_01_07_425794	262	5	July	July	NNP
10_1101-2021_01_07_425794	262	6	2020	2020	CD
10_1101-2021_01_07_425794	262	7	,	,	,
10_1101-2021_01_07_425794	262	8	the	the	DT
10_1101-2021_01_07_425794	262	9	number	number	NN
10_1101-2021_01_07_425794	262	10	of	of	IN
10_1101-2021_01_07_425794	262	11	gene	gene	NN
10_1101-2021_01_07_425794	262	12	transcripts	transcript	NNS
10_1101-2021_01_07_425794	262	13	in	in	IN
10_1101-2021_01_07_425794	262	14	the	the	DT
10_1101-2021_01_07_425794	262	15	vertebrate	vertebrate	JJ
10_1101-2021_01_07_425794	262	16	mammalian	mammalian	JJ
10_1101-2021_01_07_425794	262	17	organisms	organism	NNS
10_1101-2021_01_07_425794	262	18	included	include	VBN
10_1101-2021_01_07_425794	262	19	in	in	IN
10_1101-2021_01_07_425794	262	20	the	the	DT
10_1101-2021_01_07_425794	262	21	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	262	22	database	database	NN
10_1101-2021_01_07_425794	262	23	increased	increase	VBD
10_1101-2021_01_07_425794	262	24	significantly	significantly	RB
10_1101-2021_01_07_425794	262	25	from	from	IN
10_1101-2021_01_07_425794	262	26	3.6	3.6	CD
10_1101-2021_01_07_425794	262	27	million	million	CD
10_1101-2021_01_07_425794	262	28	to	to	TO
10_1101-2021_01_07_425794	262	29	7.8	7.8	CD
10_1101-2021_01_07_425794	262	30	million	million	CD
10_1101-2021_01_07_425794	262	31	(	(	-LRB-
10_1101-2021_01_07_425794	262	32	https://www.ncbi.nlm.nih.gov/refseq/statistics/	https://www.ncbi.nlm.nih.gov/refseq/statistics/	NNP
10_1101-2021_01_07_425794	262	33	)	)	-RRB-
10_1101-2021_01_07_425794	262	34	,	,	,
10_1101-2021_01_07_425794	262	35	a	a	DT
10_1101-2021_01_07_425794	262	36	more	more	RBR
10_1101-2021_01_07_425794	262	37	than	than	IN
10_1101-2021_01_07_425794	262	38	twofold	twofold	JJ
10_1101-2021_01_07_425794	262	39	increase	increase	NN
10_1101-2021_01_07_425794	262	40	in	in	IN
10_1101-2021_01_07_425794	262	41	just	just	RB
10_1101-2021_01_07_425794	262	42	around	around	IN
10_1101-2021_01_07_425794	262	43	5	5	CD
10_1101-2021_01_07_425794	262	44	years	year	NNS
10_1101-2021_01_07_425794	262	45	.	.	.
10_1101-2021_01_07_425794	263	1	The	the	DT
10_1101-2021_01_07_425794	263	2	use	use	NN
10_1101-2021_01_07_425794	263	3	of	of	IN
10_1101-2021_01_07_425794	263	4	sequencing	sequence	VBG
10_1101-2021_01_07_425794	263	5	data	datum	NNS
10_1101-2021_01_07_425794	263	6	for	for	IN
10_1101-2021_01_07_425794	263	7	annotation	annotation	NN
10_1101-2021_01_07_425794	263	8	generation	generation	NN
10_1101-2021_01_07_425794	263	9	should	should	MD
10_1101-2021_01_07_425794	263	10	be	be	VB
10_1101-2021_01_07_425794	263	11	a	a	DT
10_1101-2021_01_07_425794	263	12	significant	significant	JJ
10_1101-2021_01_07_425794	263	13	driver	driver	NN
10_1101-2021_01_07_425794	263	14	for	for	IN
10_1101-2021_01_07_425794	263	15	this	this	DT
10_1101-2021_01_07_425794	263	16	rapid	rapid	JJ
10_1101-2021_01_07_425794	263	17	expansion	expansion	NN
10_1101-2021_01_07_425794	263	18	of	of	IN
10_1101-2021_01_07_425794	263	19	the	the	DT
10_1101-2021_01_07_425794	263	20	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	263	21	database	database	NN
10_1101-2021_01_07_425794	263	22	.	.	.
10_1101-2021_01_07_425794	264	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	264	2	is	be	VBZ
10_1101-2021_01_07_425794	264	3	known	know	VBN
10_1101-2021_01_07_425794	264	4	that	that	IN
10_1101-2021_01_07_425794	264	5	some	some	DT
10_1101-2021_01_07_425794	264	6	errors	error	NNS
10_1101-2021_01_07_425794	264	7	associated	associate	VBN
10_1101-2021_01_07_425794	264	8	with	with	IN
10_1101-2021_01_07_425794	264	9	the	the	DT
10_1101-2021_01_07_425794	264	10	generation	generation	NN
10_1101-2021_01_07_425794	264	11	and	and	CC
10_1101-2021_01_07_425794	264	12	analysis	analysis	NN
10_1101-2021_01_07_425794	264	13	of	of	IN
10_1101-2021_01_07_425794	264	14	sequencing	sequence	VBG
10_1101-2021_01_07_425794	264	15	data	datum	NNS
10_1101-2021_01_07_425794	264	16	are	be	VBP
10_1101-2021_01_07_425794	264	17	difficult	difficult	JJ
10_1101-2021_01_07_425794	264	18	to	to	TO
10_1101-2021_01_07_425794	264	19	correct	correct	VB
10_1101-2021_01_07_425794	264	20	,	,	,
10_1101-2021_01_07_425794	264	21	such	such	JJ
10_1101-2021_01_07_425794	264	22	as	as	IN
10_1101-2021_01_07_425794	264	23	sample	sample	NN
10_1101-2021_01_07_425794	264	24	contamination	contamination	NN
10_1101-2021_01_07_425794	264	25	,	,	,
10_1101-2021_01_07_425794	264	26	sequencing	sequence	VBG
10_1101-2021_01_07_425794	264	27	errors	error	NNS
10_1101-2021_01_07_425794	264	28	,	,	,
10_1101-2021_01_07_425794	264	29	read	read	VB
10_1101-2021_01_07_425794	264	30	mapping	mapping	NN
10_1101-2021_01_07_425794	264	31	errors	error	NNS
10_1101-2021_01_07_425794	264	32	and	and	CC
10_1101-2021_01_07_425794	264	33	read	read	VBD
10_1101-2021_01_07_425794	264	34	assembly	assembly	NN
10_1101-2021_01_07_425794	264	35	errors	error	NNS
10_1101-2021_01_07_425794	264	36	.	.	.
10_1101-2021_01_07_425794	265	1	When	when	WRB
10_1101-2021_01_07_425794	265	2	these	these	DT
10_1101-2021_01_07_425794	265	3	errors	error	NNS
10_1101-2021_01_07_425794	265	4	were	be	VBD
10_1101-2021_01_07_425794	265	5	brought	bring	VBN
10_1101-2021_01_07_425794	265	6	to	to	IN
10_1101-2021_01_07_425794	265	7	the	the	DT
10_1101-2021_01_07_425794	265	8	annotation	annotation	NN
10_1101-2021_01_07_425794	265	9	process	process	NN
10_1101-2021_01_07_425794	265	10	,	,	,
10_1101-2021_01_07_425794	265	11	they	-PRON-	PRP
10_1101-2021_01_07_425794	265	12	could	could	MD
10_1101-2021_01_07_425794	265	13	result	result	VB
10_1101-2021_01_07_425794	265	14	in	in	IN
10_1101-2021_01_07_425794	265	15	incorrect	incorrect	JJ
10_1101-2021_01_07_425794	265	16	gene	gene	NN
10_1101-2021_01_07_425794	265	17	annotations	annotation	NNS
10_1101-2021_01_07_425794	265	18	being	be	VBG
10_1101-2021_01_07_425794	265	19	generated	generate	VBN
10_1101-2021_01_07_425794	265	20	and	and	CC
10_1101-2021_01_07_425794	265	21	consequently	consequently	RB
10_1101-2021_01_07_425794	265	22	led	lead	VBD
10_1101-2021_01_07_425794	265	23	to	to	IN
10_1101-2021_01_07_425794	265	24	less	less	RBR
10_1101-2021_01_07_425794	265	25	accurate	accurate	JJ
10_1101-2021_01_07_425794	265	26	quantification	quantification	NN
10_1101-2021_01_07_425794	265	27	of	of	IN
10_1101-2021_01_07_425794	265	28	the	the	DT
10_1101-2021_01_07_425794	265	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	265	30	-	-	HYPH
10_1101-2021_01_07_425794	265	31	seq	seq	NN
10_1101-2021_01_07_425794	265	32	data	datum	NNS
10_1101-2021_01_07_425794	265	33	.	.	.
10_1101-2021_01_07_425794	266	1	5	5	CD
10_1101-2021_01_07_425794	266	2	CONCLUSION	conclusion	NN
10_1101-2021_01_07_425794	266	3	In	in	IN
10_1101-2021_01_07_425794	266	4	conclusion	conclusion	NN
10_1101-2021_01_07_425794	266	5	,	,	,
10_1101-2021_01_07_425794	266	6	our	-PRON-	PRP$
10_1101-2021_01_07_425794	266	7	findings	finding	NNS
10_1101-2021_01_07_425794	266	8	from	from	IN
10_1101-2021_01_07_425794	266	9	this	this	DT
10_1101-2021_01_07_425794	266	10	study	study	NN
10_1101-2021_01_07_425794	266	11	revealed	reveal	VBD
10_1101-2021_01_07_425794	266	12	that	that	IN
10_1101-2021_01_07_425794	266	13	the	the	DT
10_1101-2021_01_07_425794	266	14	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	266	15	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	266	16	human	human	JJ
10_1101-2021_01_07_425794	266	17	gene	gene	NN
10_1101-2021_01_07_425794	266	18	annotations	annotation	NNS
10_1101-2021_01_07_425794	266	19	outperformed	outperform	VBD
10_1101-2021_01_07_425794	266	20	the	the	DT
10_1101-2021_01_07_425794	266	21	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	266	22	human	human	JJ
10_1101-2021_01_07_425794	266	23	gene	gene	NN
10_1101-2021_01_07_425794	266	24	annotation	annotation	NN
10_1101-2021_01_07_425794	266	25	in	in	IN
10_1101-2021_01_07_425794	266	26	the	the	DT
10_1101-2021_01_07_425794	266	27	quantification	quantification	NN
10_1101-2021_01_07_425794	266	28	of	of	IN
10_1101-2021_01_07_425794	266	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	266	30	-	-	HYPH
10_1101-2021_01_07_425794	266	31	seq	seq	NN
10_1101-2021_01_07_425794	266	32	data	datum	NNS
10_1101-2021_01_07_425794	266	33	.	.	.
10_1101-2021_01_07_425794	267	1	However	however	RB
10_1101-2021_01_07_425794	267	2	,	,	,
10_1101-2021_01_07_425794	267	3	we	-PRON-	PRP
10_1101-2021_01_07_425794	267	4	also	also	RB
10_1101-2021_01_07_425794	267	5	raised	raise	VBD
10_1101-2021_01_07_425794	267	6	concerns	concern	NNS
10_1101-2021_01_07_425794	267	7	over	over	IN
10_1101-2021_01_07_425794	267	8	the	the	DT
10_1101-2021_01_07_425794	267	9	recent	recent	JJ
10_1101-2021_01_07_425794	267	10	changes	change	NNS
10_1101-2021_01_07_425794	267	11	made	make	VBN
10_1101-2021_01_07_425794	267	12	to	to	IN
10_1101-2021_01_07_425794	267	13	the	the	DT
10_1101-2021_01_07_425794	267	14	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	267	15	database	database	NN
10_1101-2021_01_07_425794	267	16	due	due	IN
10_1101-2021_01_07_425794	267	17	to	to	IN
10_1101-2021_01_07_425794	267	18	the	the	DT
10_1101-2021_01_07_425794	267	19	use	use	NN
10_1101-2021_01_07_425794	267	20	of	of	IN
10_1101-2021_01_07_425794	267	21	sequencing	sequence	VBG
10_1101-2021_01_07_425794	267	22	data	datum	NNS
10_1101-2021_01_07_425794	267	23	in	in	IN
10_1101-2021_01_07_425794	267	24	the	the	DT
10_1101-2021_01_07_425794	267	25	annotation	annotation	NN
10_1101-2021_01_07_425794	267	26	generation	generation	NN
10_1101-2021_01_07_425794	267	27	process	process	NN
10_1101-2021_01_07_425794	267	28	.	.	.
10_1101-2021_01_07_425794	268	1	These	these	DT
10_1101-2021_01_07_425794	268	2	changes	change	NNS
10_1101-2021_01_07_425794	268	3	need	need	VBP
10_1101-2021_01_07_425794	268	4	to	to	TO
10_1101-2021_01_07_425794	268	5	be	be	VB
10_1101-2021_01_07_425794	268	6	reviewed	review	VBN
10_1101-2021_01_07_425794	268	7	and	and	CC
10_1101-2021_01_07_425794	268	8	validated	validate	VBN
10_1101-2021_01_07_425794	268	9	so	so	IN
10_1101-2021_01_07_425794	268	10	as	as	IN
10_1101-2021_01_07_425794	268	11	to	to	TO
10_1101-2021_01_07_425794	268	12	ensure	ensure	VB
10_1101-2021_01_07_425794	268	13	the	the	DT
10_1101-2021_01_07_425794	268	14	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	268	15	database	database	NN
10_1101-2021_01_07_425794	268	16	continues	continue	VBZ
10_1101-2021_01_07_425794	268	17	to	to	TO
10_1101-2021_01_07_425794	268	18	be	be	VB
10_1101-2021_01_07_425794	268	19	a	a	DT
10_1101-2021_01_07_425794	268	20	reliable	reliable	JJ
10_1101-2021_01_07_425794	268	21	and	and	CC
10_1101-2021_01_07_425794	268	22	high	high	JJ
10_1101-2021_01_07_425794	268	23	-	-	HYPH
10_1101-2021_01_07_425794	268	24	quality	quality	NN
10_1101-2021_01_07_425794	268	25	gene	gene	NN
10_1101-2021_01_07_425794	268	26	annotation	annotation	NN
10_1101-2021_01_07_425794	268	27	resource	resource	NN
10_1101-2021_01_07_425794	268	28	for	for	IN
10_1101-2021_01_07_425794	268	29	the	the	DT
10_1101-2021_01_07_425794	268	30	research	research	NN
10_1101-2021_01_07_425794	268	31	com-	com-	NN
10_1101-2021_01_07_425794	268	32	munity	munity	NN
10_1101-2021_01_07_425794	268	33	.	.	.
10_1101-2021_01_07_425794	269	1	Similarly	similarly	RB
10_1101-2021_01_07_425794	269	2	,	,	,
10_1101-2021_01_07_425794	269	3	such	such	JJ
10_1101-2021_01_07_425794	269	4	review	review	NN
10_1101-2021_01_07_425794	269	5	should	should	MD
10_1101-2021_01_07_425794	269	6	be	be	VB
10_1101-2021_01_07_425794	269	7	conducted	conduct	VBN
10_1101-2021_01_07_425794	269	8	for	for	IN
10_1101-2021_01_07_425794	269	9	other	other	JJ
10_1101-2021_01_07_425794	269	10	gene	gene	NN
10_1101-2021_01_07_425794	269	11	annotation	annotation	NN
10_1101-2021_01_07_425794	269	12	databases	database	NNS
10_1101-2021_01_07_425794	269	13	as	as	RB
10_1101-2021_01_07_425794	269	14	well	well	RB
10_1101-2021_01_07_425794	269	15	.	.	.
10_1101-2021_01_07_425794	270	1	The	the	DT
10_1101-2021_01_07_425794	270	2	research	research	NN
10_1101-2021_01_07_425794	270	3	findings	finding	NNS
10_1101-2021_01_07_425794	270	4	from	from	IN
10_1101-2021_01_07_425794	270	5	this	this	DT
10_1101-2021_01_07_425794	270	6	study	study	NN
10_1101-2021_01_07_425794	270	7	also	also	RB
10_1101-2021_01_07_425794	270	8	have	have	VBP
10_1101-2021_01_07_425794	270	9	an	an	DT
10_1101-2021_01_07_425794	270	10	implication	implication	NN
10_1101-2021_01_07_425794	270	11	for	for	IN
10_1101-2021_01_07_425794	270	12	the	the	DT
10_1101-2021_01_07_425794	270	13	quantification	quantification	NN
10_1101-2021_01_07_425794	270	14	of	of	IN
10_1101-2021_01_07_425794	270	15	RNA	RNA	NNP
10_1101-2021_01_07_425794	270	16	-	-	HYPH
10_1101-2021_01_07_425794	270	17	seq	seq	NN
10_1101-2021_01_07_425794	270	18	data	datum	NNS
10_1101-2021_01_07_425794	270	19	generated	generate	VBN
10_1101-2021_01_07_425794	270	20	by	by	IN
10_1101-2021_01_07_425794	270	21	the	the	DT
10_1101-2021_01_07_425794	270	22	recently	recently	RB
10_1101-2021_01_07_425794	270	23	emerged	emerge	VBN
10_1101-2021_01_07_425794	270	24	single	single	JJ
10_1101-2021_01_07_425794	270	25	-	-	HYPH
10_1101-2021_01_07_425794	270	26	cell	cell	NN
10_1101-2021_01_07_425794	270	27	sequencing	sequencing	NN
10_1101-2021_01_07_425794	270	28	technologies	technology	NNS
10_1101-2021_01_07_425794	270	29	.	.	.
10_1101-2021_01_07_425794	271	1	20	20	CD
10_1101-2021_01_07_425794	271	2	.CC	.CC	:
10_1101-2021_01_07_425794	271	3	-	-	HYPH
10_1101-2021_01_07_425794	271	4	BY	by	IN
10_1101-2021_01_07_425794	271	5	-	-	HYPH
10_1101-2021_01_07_425794	271	6	NC	NC	NNP
10_1101-2021_01_07_425794	271	7	-	-	HYPH
10_1101-2021_01_07_425794	271	8	ND	ND	NNP
10_1101-2021_01_07_425794	271	9	4.0	4.0	CD
10_1101-2021_01_07_425794	271	10	International	international	JJ
10_1101-2021_01_07_425794	271	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	271	12	available	available	JJ
10_1101-2021_01_07_425794	271	13	under	under	IN
10_1101-2021_01_07_425794	271	14	a	a	DT
10_1101-2021_01_07_425794	271	15	(	(	-LRB-
10_1101-2021_01_07_425794	271	16	which	which	WDT
10_1101-2021_01_07_425794	271	17	was	be	VBD
10_1101-2021_01_07_425794	271	18	not	not	RB
10_1101-2021_01_07_425794	271	19	certified	certify	VBN
10_1101-2021_01_07_425794	271	20	by	by	IN
10_1101-2021_01_07_425794	271	21	peer	peer	NN
10_1101-2021_01_07_425794	271	22	review	review	NN
10_1101-2021_01_07_425794	271	23	)	)	-RRB-
10_1101-2021_01_07_425794	271	24	is	be	VBZ
10_1101-2021_01_07_425794	271	25	the	the	DT
10_1101-2021_01_07_425794	271	26	author	author	NN
10_1101-2021_01_07_425794	271	27	/	/	SYM
10_1101-2021_01_07_425794	271	28	funder	funder	NN
10_1101-2021_01_07_425794	271	29	,	,	,
10_1101-2021_01_07_425794	271	30	who	who	WP
10_1101-2021_01_07_425794	271	31	has	have	VBZ
10_1101-2021_01_07_425794	271	32	granted	grant	VBN
10_1101-2021_01_07_425794	271	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	271	34	a	a	DT
10_1101-2021_01_07_425794	271	35	license	license	NN
10_1101-2021_01_07_425794	271	36	to	to	TO
10_1101-2021_01_07_425794	271	37	display	display	VB
10_1101-2021_01_07_425794	271	38	the	the	DT
10_1101-2021_01_07_425794	271	39	preprint	preprint	NN
10_1101-2021_01_07_425794	271	40	in	in	IN
10_1101-2021_01_07_425794	271	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	271	42	.	.	.
10_1101-2021_01_07_425794	272	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	272	2	is	be	VBZ
10_1101-2021_01_07_425794	272	3	The	the	DT
10_1101-2021_01_07_425794	272	4	copyright	copyright	NN
10_1101-2021_01_07_425794	272	5	holder	holder	NN
10_1101-2021_01_07_425794	272	6	for	for	IN
10_1101-2021_01_07_425794	272	7	this	this	DT
10_1101-2021_01_07_425794	272	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	272	9	version	version	NN
10_1101-2021_01_07_425794	272	10	posted	post	VBD
10_1101-2021_01_07_425794	272	11	January	January	NNP
10_1101-2021_01_07_425794	272	12	8	8	CD
10_1101-2021_01_07_425794	272	13	,	,	,
10_1101-2021_01_07_425794	272	14	2021	2021	CD
10_1101-2021_01_07_425794	272	15	.	.	.
10_1101-2021_01_07_425794	272	16	;	;	:
10_1101-2021_01_07_425794	272	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	272	18	:	:	:
10_1101-2021_01_07_425794	272	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	272	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	272	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	272	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	272	23	Same	Same	NNP
10_1101-2021_01_07_425794	272	24	as	as	IN
10_1101-2021_01_07_425794	272	25	the	the	DT
10_1101-2021_01_07_425794	272	26	quantification	quantification	NN
10_1101-2021_01_07_425794	272	27	of	of	IN
10_1101-2021_01_07_425794	272	28	bulk	bulk	NNP
10_1101-2021_01_07_425794	272	29	RNA	RNA	NNP
10_1101-2021_01_07_425794	272	30	-	-	HYPH
10_1101-2021_01_07_425794	272	31	seq	seq	NN
10_1101-2021_01_07_425794	272	32	data	datum	NNS
10_1101-2021_01_07_425794	272	33	,	,	,
10_1101-2021_01_07_425794	272	34	an	an	DT
10_1101-2021_01_07_425794	272	35	accurate	accurate	JJ
10_1101-2021_01_07_425794	272	36	gene	gene	NN
10_1101-2021_01_07_425794	272	37	annotation	annotation	NN
10_1101-2021_01_07_425794	272	38	is	be	VBZ
10_1101-2021_01_07_425794	272	39	also	also	RB
10_1101-2021_01_07_425794	272	40	required	require	VBN
10_1101-2021_01_07_425794	272	41	for	for	IN
10_1101-2021_01_07_425794	272	42	quantifying	quantify	VBG
10_1101-2021_01_07_425794	272	43	single	single	JJ
10_1101-2021_01_07_425794	272	44	-	-	HYPH
10_1101-2021_01_07_425794	272	45	cell	cell	NN
10_1101-2021_01_07_425794	272	46	RNA	RNA	NNP
10_1101-2021_01_07_425794	272	47	-	-	HYPH
10_1101-2021_01_07_425794	272	48	seq	seq	NN
10_1101-2021_01_07_425794	272	49	data	datum	NNS
10_1101-2021_01_07_425794	272	50	.	.	.
10_1101-2021_01_07_425794	273	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	273	2	is	be	VBZ
10_1101-2021_01_07_425794	273	3	therefore	therefore	RB
10_1101-2021_01_07_425794	273	4	important	important	JJ
10_1101-2021_01_07_425794	273	5	to	to	TO
10_1101-2021_01_07_425794	273	6	understand	understand	VB
10_1101-2021_01_07_425794	273	7	if	if	IN
10_1101-2021_01_07_425794	273	8	and	and	CC
10_1101-2021_01_07_425794	273	9	how	how	WRB
10_1101-2021_01_07_425794	273	10	the	the	DT
10_1101-2021_01_07_425794	273	11	annotation	annotation	NN
10_1101-2021_01_07_425794	273	12	choice	choice	NN
10_1101-2021_01_07_425794	273	13	impacts	impact	VBZ
10_1101-2021_01_07_425794	273	14	the	the	DT
10_1101-2021_01_07_425794	273	15	quantification	quantification	NN
10_1101-2021_01_07_425794	273	16	accuracy	accuracy	NN
10_1101-2021_01_07_425794	273	17	of	of	IN
10_1101-2021_01_07_425794	273	18	the	the	DT
10_1101-2021_01_07_425794	273	19	single	single	JJ
10_1101-2021_01_07_425794	273	20	-	-	HYPH
10_1101-2021_01_07_425794	273	21	cell	cell	NN
10_1101-2021_01_07_425794	273	22	RNA	RNA	NNP
10_1101-2021_01_07_425794	273	23	-	-	HYPH
10_1101-2021_01_07_425794	273	24	seq	seq	NN
10_1101-2021_01_07_425794	273	25	data	datum	NNS
10_1101-2021_01_07_425794	273	26	as	as	RB
10_1101-2021_01_07_425794	273	27	well	well	RB
10_1101-2021_01_07_425794	273	28	.	.	.
10_1101-2021_01_07_425794	274	1	References	reference	NNS
10_1101-2021_01_07_425794	274	2	[	[	-LRB-
10_1101-2021_01_07_425794	274	3	1	1	CD
10_1101-2021_01_07_425794	274	4	]	]	-RRB-
10_1101-2021_01_07_425794	274	5	Zhenqiang	Zhenqiang	NNP
10_1101-2021_01_07_425794	274	6	Su	Su	NNP
10_1101-2021_01_07_425794	274	7	,	,	,
10_1101-2021_01_07_425794	274	8	Pawe	Pawe	NNP
10_1101-2021_01_07_425794	274	9	l	l	NNP
10_1101-2021_01_07_425794	274	10	P	P	NNP
10_1101-2021_01_07_425794	274	11	Labaj	Labaj	NNP
10_1101-2021_01_07_425794	274	12	,	,	,
10_1101-2021_01_07_425794	274	13	Sheng	Sheng	NNP
10_1101-2021_01_07_425794	274	14	Li	Li	NNP
10_1101-2021_01_07_425794	274	15	,	,	,
10_1101-2021_01_07_425794	274	16	Jean	Jean	NNP
10_1101-2021_01_07_425794	274	17	Thierry	Thierry	NNP
10_1101-2021_01_07_425794	274	18	-	-	HYPH
10_1101-2021_01_07_425794	274	19	Mieg	Mieg	NNP
10_1101-2021_01_07_425794	274	20	,	,	,
10_1101-2021_01_07_425794	274	21	Danielle	Danielle	NNP
10_1101-2021_01_07_425794	274	22	Thierry	Thierry	NNP
10_1101-2021_01_07_425794	274	23	-	-	HYPH
10_1101-2021_01_07_425794	274	24	Mieg	Mieg	NNP
10_1101-2021_01_07_425794	274	25	,	,	,
10_1101-2021_01_07_425794	274	26	Wei	Wei	NNP
10_1101-2021_01_07_425794	274	27	Shi	Shi	NNP
10_1101-2021_01_07_425794	274	28	,	,	,
10_1101-2021_01_07_425794	274	29	Charles	Charles	NNP
10_1101-2021_01_07_425794	274	30	Wang	Wang	NNP
10_1101-2021_01_07_425794	274	31	,	,	,
10_1101-2021_01_07_425794	274	32	Gary	Gary	NNP
10_1101-2021_01_07_425794	274	33	P	P	NNP
10_1101-2021_01_07_425794	274	34	Schroth	Schroth	NNP
10_1101-2021_01_07_425794	274	35	,	,	,
10_1101-2021_01_07_425794	274	36	Robert	Robert	NNP
10_1101-2021_01_07_425794	274	37	A	A	NNP
10_1101-2021_01_07_425794	274	38	Setterquist	Setterquist	NNP
10_1101-2021_01_07_425794	274	39	,	,	,
10_1101-2021_01_07_425794	274	40	John	John	NNP
10_1101-2021_01_07_425794	274	41	F	F	NNP
10_1101-2021_01_07_425794	274	42	Thomp-	Thomp-	NNP
10_1101-2021_01_07_425794	274	43	son	son	NN
10_1101-2021_01_07_425794	274	44	,	,	,
10_1101-2021_01_07_425794	274	45	et	et	NNP
10_1101-2021_01_07_425794	274	46	al	al	NNP
10_1101-2021_01_07_425794	274	47	.	.	.
10_1101-2021_01_07_425794	275	1	A	a	DT
10_1101-2021_01_07_425794	275	2	comprehensive	comprehensive	JJ
10_1101-2021_01_07_425794	275	3	assessment	assessment	NN
10_1101-2021_01_07_425794	275	4	of	of	IN
10_1101-2021_01_07_425794	275	5	RNA	RNA	NNP
10_1101-2021_01_07_425794	275	6	-	-	HYPH
10_1101-2021_01_07_425794	275	7	seq	seq	NN
10_1101-2021_01_07_425794	275	8	accuracy	accuracy	NN
10_1101-2021_01_07_425794	275	9	,	,	,
10_1101-2021_01_07_425794	275	10	reproducibility	reproducibility	NN
10_1101-2021_01_07_425794	275	11	and	and	CC
10_1101-2021_01_07_425794	275	12	information	information	NN
10_1101-2021_01_07_425794	275	13	content	content	NN
10_1101-2021_01_07_425794	275	14	by	by	IN
10_1101-2021_01_07_425794	275	15	the	the	DT
10_1101-2021_01_07_425794	275	16	Sequencing	Sequencing	NNP
10_1101-2021_01_07_425794	275	17	Quality	Quality	NNP
10_1101-2021_01_07_425794	275	18	Control	Control	NNP
10_1101-2021_01_07_425794	275	19	Consortium	Consortium	NNP
10_1101-2021_01_07_425794	275	20	.	.	.
10_1101-2021_01_07_425794	276	1	Nature	Nature	NNP
10_1101-2021_01_07_425794	276	2	Biotech-	Biotech-	NNP
10_1101-2021_01_07_425794	276	3	nology	nology	NN
10_1101-2021_01_07_425794	276	4	,	,	,
10_1101-2021_01_07_425794	276	5	32(9):903	32(9):903	CD
10_1101-2021_01_07_425794	276	6	,	,	,
10_1101-2021_01_07_425794	276	7	2014	2014	CD
10_1101-2021_01_07_425794	276	8	.	.	.
10_1101-2021_01_07_425794	277	1	[	[	-LRB-
10_1101-2021_01_07_425794	277	2	2	2	LS
10_1101-2021_01_07_425794	277	3	]	]	-RRB-
10_1101-2021_01_07_425794	277	4	Yunshun	Yunshun	NNP
10_1101-2021_01_07_425794	277	5	Chen	Chen	NNP
10_1101-2021_01_07_425794	277	6	,	,	,
10_1101-2021_01_07_425794	277	7	Aaron	Aaron	NNP
10_1101-2021_01_07_425794	277	8	TL	TL	NNP
10_1101-2021_01_07_425794	277	9	Lun	Lun	NNP
10_1101-2021_01_07_425794	277	10	,	,	,
10_1101-2021_01_07_425794	277	11	and	and	CC
10_1101-2021_01_07_425794	277	12	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	277	13	K	K	NNP
10_1101-2021_01_07_425794	277	14	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	277	15	.	.	.
10_1101-2021_01_07_425794	278	1	From	from	IN
10_1101-2021_01_07_425794	278	2	reads	read	NNS
10_1101-2021_01_07_425794	278	3	to	to	IN
10_1101-2021_01_07_425794	278	4	genes	gene	NNS
10_1101-2021_01_07_425794	278	5	to	to	IN
10_1101-2021_01_07_425794	278	6	pathways	pathway	NNS
10_1101-2021_01_07_425794	278	7	:	:	:
10_1101-2021_01_07_425794	278	8	differential	differential	VB
10_1101-2021_01_07_425794	278	9	expression	expression	NN
10_1101-2021_01_07_425794	278	10	analysis	analysis	NN
10_1101-2021_01_07_425794	278	11	of	of	IN
10_1101-2021_01_07_425794	278	12	RNA	RNA	NNP
10_1101-2021_01_07_425794	278	13	-	-	HYPH
10_1101-2021_01_07_425794	278	14	Seq	Seq	NNP
10_1101-2021_01_07_425794	278	15	experiments	experiment	NNS
10_1101-2021_01_07_425794	278	16	using	use	VBG
10_1101-2021_01_07_425794	278	17	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	278	18	and	and	CC
10_1101-2021_01_07_425794	278	19	the	the	DT
10_1101-2021_01_07_425794	278	20	edgeR	edgeR	NNP
10_1101-2021_01_07_425794	278	21	quasi	quasi	NNP
10_1101-2021_01_07_425794	278	22	-	-	HYPH
10_1101-2021_01_07_425794	278	23	likelihood	likelihood	NNP
10_1101-2021_01_07_425794	278	24	pipeline	pipeline	NN
10_1101-2021_01_07_425794	278	25	.	.	.
10_1101-2021_01_07_425794	279	1	F1000Research	F1000Research	NNP
10_1101-2021_01_07_425794	279	2	,	,	,
10_1101-2021_01_07_425794	279	3	5:1438	5:1438	CD
10_1101-2021_01_07_425794	279	4	,	,	,
10_1101-2021_01_07_425794	279	5	2016	2016	CD
10_1101-2021_01_07_425794	279	6	.	.	.
10_1101-2021_01_07_425794	280	1	[	[	-LRB-
10_1101-2021_01_07_425794	280	2	3	3	LS
10_1101-2021_01_07_425794	280	3	]	]	-RRB-
10_1101-2021_01_07_425794	280	4	Simon	Simon	NNP
10_1101-2021_01_07_425794	280	5	Anders	Anders	NNP
10_1101-2021_01_07_425794	280	6	,	,	,
10_1101-2021_01_07_425794	280	7	Paul	Paul	NNP
10_1101-2021_01_07_425794	280	8	T	T	NNP
10_1101-2021_01_07_425794	280	9	Pyl	Pyl	NNP
10_1101-2021_01_07_425794	280	10	,	,	,
10_1101-2021_01_07_425794	280	11	and	and	CC
10_1101-2021_01_07_425794	280	12	Wolfgang	Wolfgang	NNP
10_1101-2021_01_07_425794	280	13	Huber	Huber	NNP
10_1101-2021_01_07_425794	280	14	.	.	.
10_1101-2021_01_07_425794	281	1	HTSeq	HTSeq	NNP
10_1101-2021_01_07_425794	281	2	–	–	:
10_1101-2021_01_07_425794	281	3	a	a	DT
10_1101-2021_01_07_425794	281	4	Python	Python	NNP
10_1101-2021_01_07_425794	281	5	framework	framework	NN
10_1101-2021_01_07_425794	281	6	to	to	TO
10_1101-2021_01_07_425794	281	7	work	work	VB
10_1101-2021_01_07_425794	281	8	with	with	IN
10_1101-2021_01_07_425794	281	9	high	high	JJ
10_1101-2021_01_07_425794	281	10	-	-	HYPH
10_1101-2021_01_07_425794	281	11	throughput	throughput	NN
10_1101-2021_01_07_425794	281	12	sequencing	sequencing	NN
10_1101-2021_01_07_425794	281	13	data	datum	NNS
10_1101-2021_01_07_425794	281	14	.	.	.
10_1101-2021_01_07_425794	282	1	Bioinformatics	Bioinformatics	NNP
10_1101-2021_01_07_425794	282	2	,	,	,
10_1101-2021_01_07_425794	282	3	31(2):166–9	31(2):166–9	NNP
10_1101-2021_01_07_425794	282	4	,	,	,
10_1101-2021_01_07_425794	282	5	2015	2015	CD
10_1101-2021_01_07_425794	282	6	.	.	.
10_1101-2021_01_07_425794	283	1	[	[	-LRB-
10_1101-2021_01_07_425794	283	2	4	4	CD
10_1101-2021_01_07_425794	283	3	]	]	-RRB-
10_1101-2021_01_07_425794	283	4	Yang	Yang	NNP
10_1101-2021_01_07_425794	283	5	Liao	Liao	NNP
10_1101-2021_01_07_425794	283	6	,	,	,
10_1101-2021_01_07_425794	283	7	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	283	8	K	K	NNP
10_1101-2021_01_07_425794	283	9	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	283	10	,	,	,
10_1101-2021_01_07_425794	283	11	and	and	CC
10_1101-2021_01_07_425794	283	12	Wei	Wei	NNP
10_1101-2021_01_07_425794	283	13	Shi	Shi	NNP
10_1101-2021_01_07_425794	283	14	.	.	.
10_1101-2021_01_07_425794	284	1	featureCounts	featurecount	NNS
10_1101-2021_01_07_425794	284	2	:	:	:
10_1101-2021_01_07_425794	284	3	an	an	DT
10_1101-2021_01_07_425794	284	4	efficient	efficient	JJ
10_1101-2021_01_07_425794	284	5	general	general	JJ
10_1101-2021_01_07_425794	284	6	purpose	purpose	NN
10_1101-2021_01_07_425794	284	7	program	program	NN
10_1101-2021_01_07_425794	284	8	for	for	IN
10_1101-2021_01_07_425794	284	9	assigning	assigning	NN
10_1101-2021_01_07_425794	284	10	sequence	sequence	NN
10_1101-2021_01_07_425794	284	11	reads	read	VBZ
10_1101-2021_01_07_425794	284	12	to	to	IN
10_1101-2021_01_07_425794	284	13	genomic	genomic	JJ
10_1101-2021_01_07_425794	284	14	features	feature	NNS
10_1101-2021_01_07_425794	284	15	.	.	.
10_1101-2021_01_07_425794	285	1	Bioinformatics	Bioinformatics	NNP
10_1101-2021_01_07_425794	285	2	,	,	,
10_1101-2021_01_07_425794	285	3	30(7):923–930	30(7):923–930	CD
10_1101-2021_01_07_425794	285	4	,	,	,
10_1101-2021_01_07_425794	285	5	2014	2014	CD
10_1101-2021_01_07_425794	285	6	.	.	.
10_1101-2021_01_07_425794	286	1	[	[	-LRB-
10_1101-2021_01_07_425794	286	2	5	5	CD
10_1101-2021_01_07_425794	286	3	]	]	-RRB-
10_1101-2021_01_07_425794	286	4	Yang	Yang	NNP
10_1101-2021_01_07_425794	286	5	Liao	Liao	NNP
10_1101-2021_01_07_425794	286	6	,	,	,
10_1101-2021_01_07_425794	286	7	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	286	8	K	K	NNP
10_1101-2021_01_07_425794	286	9	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	286	10	,	,	,
10_1101-2021_01_07_425794	286	11	and	and	CC
10_1101-2021_01_07_425794	286	12	Wei	Wei	NNP
10_1101-2021_01_07_425794	286	13	Shi	Shi	NNP
10_1101-2021_01_07_425794	286	14	.	.	.
10_1101-2021_01_07_425794	287	1	The	the	DT
10_1101-2021_01_07_425794	287	2	R	r	NN
10_1101-2021_01_07_425794	287	3	package	package	NN
10_1101-2021_01_07_425794	287	4	Rsubread	Rsubread	NNP
10_1101-2021_01_07_425794	287	5	is	be	VBZ
10_1101-2021_01_07_425794	287	6	easier	easy	JJR
10_1101-2021_01_07_425794	287	7	,	,	,
10_1101-2021_01_07_425794	287	8	faster	fast	JJR
10_1101-2021_01_07_425794	287	9	,	,	,
10_1101-2021_01_07_425794	287	10	cheaper	cheap	JJR
10_1101-2021_01_07_425794	287	11	and	and	CC
10_1101-2021_01_07_425794	287	12	better	well	JJR
10_1101-2021_01_07_425794	287	13	for	for	IN
10_1101-2021_01_07_425794	287	14	alignment	alignment	NN
10_1101-2021_01_07_425794	287	15	and	and	CC
10_1101-2021_01_07_425794	287	16	quantification	quantification	NN
10_1101-2021_01_07_425794	287	17	of	of	IN
10_1101-2021_01_07_425794	287	18	RNA	RNA	NNP
10_1101-2021_01_07_425794	287	19	sequencing	sequencing	NN
10_1101-2021_01_07_425794	287	20	reads	read	VBZ
10_1101-2021_01_07_425794	287	21	.	.	.
10_1101-2021_01_07_425794	288	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	288	2	Acids	Acids	NNP
10_1101-2021_01_07_425794	288	3	Research	Research	NNP
10_1101-2021_01_07_425794	288	4	,	,	,
10_1101-2021_01_07_425794	288	5	47(8):e47–e47	47(8):e47–e47	CD
10_1101-2021_01_07_425794	288	6	,	,	,
10_1101-2021_01_07_425794	288	7	2019	2019	CD
10_1101-2021_01_07_425794	288	8	.	.	.
10_1101-2021_01_07_425794	289	1	[	[	-LRB-
10_1101-2021_01_07_425794	289	2	6	6	CD
10_1101-2021_01_07_425794	289	3	]	]	-RRB-
10_1101-2021_01_07_425794	289	4	Steven	Steven	NNP
10_1101-2021_01_07_425794	289	5	L.	L.	NNP
10_1101-2021_01_07_425794	289	6	Salzberg	Salzberg	NNP
10_1101-2021_01_07_425794	289	7	.	.	.
10_1101-2021_01_07_425794	290	1	Next	next	JJ
10_1101-2021_01_07_425794	290	2	-	-	HYPH
10_1101-2021_01_07_425794	290	3	generation	generation	NN
10_1101-2021_01_07_425794	290	4	genome	genome	JJ
10_1101-2021_01_07_425794	290	5	annotation	annotation	NN
10_1101-2021_01_07_425794	290	6	:	:	:
10_1101-2021_01_07_425794	290	7	we	-PRON-	PRP
10_1101-2021_01_07_425794	290	8	still	still	RB
10_1101-2021_01_07_425794	290	9	struggle	struggle	VBP
10_1101-2021_01_07_425794	290	10	to	to	TO
10_1101-2021_01_07_425794	290	11	get	get	VB
10_1101-2021_01_07_425794	290	12	it	-PRON-	PRP
10_1101-2021_01_07_425794	290	13	right	right	JJ
10_1101-2021_01_07_425794	290	14	.	.	.
10_1101-2021_01_07_425794	291	1	Genome	Genome	NNP
10_1101-2021_01_07_425794	291	2	Biology	Biology	NNP
10_1101-2021_01_07_425794	291	3	,	,	,
10_1101-2021_01_07_425794	291	4	20(1):92	20(1):92	NNP
10_1101-2021_01_07_425794	291	5	,	,	,
10_1101-2021_01_07_425794	291	6	2019	2019	CD
10_1101-2021_01_07_425794	291	7	.	.	.
10_1101-2021_01_07_425794	292	1	[	[	-LRB-
10_1101-2021_01_07_425794	292	2	7	7	CD
10_1101-2021_01_07_425794	292	3	]	]	-RRB-
10_1101-2021_01_07_425794	292	4	Mihaela	Mihaela	NNP
10_1101-2021_01_07_425794	292	5	Pertea	Pertea	NNP
10_1101-2021_01_07_425794	292	6	,	,	,
10_1101-2021_01_07_425794	292	7	Alaina	Alaina	NNP
10_1101-2021_01_07_425794	292	8	Shumate	Shumate	NNP
10_1101-2021_01_07_425794	292	9	,	,	,
10_1101-2021_01_07_425794	292	10	Geo	Geo	NNP
10_1101-2021_01_07_425794	292	11	Pertea	Pertea	NNP
10_1101-2021_01_07_425794	292	12	,	,	,
10_1101-2021_01_07_425794	292	13	Ales	Ales	NNP
10_1101-2021_01_07_425794	292	14	Varabyou	Varabyou	NNP
10_1101-2021_01_07_425794	292	15	,	,	,
10_1101-2021_01_07_425794	292	16	Florian	Florian	NNP
10_1101-2021_01_07_425794	292	17	P	P	NNP
10_1101-2021_01_07_425794	292	18	Breitwieser	Breitwieser	NNP
10_1101-2021_01_07_425794	292	19	,	,	,
10_1101-2021_01_07_425794	292	20	Yu	Yu	NNP
10_1101-2021_01_07_425794	292	21	-	-	HYPH
10_1101-2021_01_07_425794	292	22	Chi	Chi	NNP
10_1101-2021_01_07_425794	292	23	Chang	Chang	NNP
10_1101-2021_01_07_425794	292	24	,	,	,
10_1101-2021_01_07_425794	292	25	Anil	Anil	NNP
10_1101-2021_01_07_425794	292	26	K	K	NNP
10_1101-2021_01_07_425794	292	27	Madugundu	Madugundu	NNP
10_1101-2021_01_07_425794	292	28	,	,	,
10_1101-2021_01_07_425794	292	29	Akhilesh	Akhilesh	NNP
10_1101-2021_01_07_425794	292	30	Pandey	Pandey	NNP
10_1101-2021_01_07_425794	292	31	,	,	,
10_1101-2021_01_07_425794	292	32	and	and	CC
10_1101-2021_01_07_425794	292	33	Steven	Steven	NNP
10_1101-2021_01_07_425794	292	34	L	L	NNP
10_1101-2021_01_07_425794	292	35	Salzberg	Salzberg	NNP
10_1101-2021_01_07_425794	292	36	.	.	.
10_1101-2021_01_07_425794	293	1	CHESS	CHESS	NNP
10_1101-2021_01_07_425794	293	2	:	:	:
10_1101-2021_01_07_425794	293	3	a	a	DT
10_1101-2021_01_07_425794	293	4	new	new	JJ
10_1101-2021_01_07_425794	293	5	human	human	JJ
10_1101-2021_01_07_425794	293	6	gene	gene	NN
10_1101-2021_01_07_425794	293	7	catalog	catalog	NN
10_1101-2021_01_07_425794	293	8	curated	curate	VBN
10_1101-2021_01_07_425794	293	9	from	from	IN
10_1101-2021_01_07_425794	293	10	thousands	thousand	NNS
10_1101-2021_01_07_425794	293	11	of	of	IN
10_1101-2021_01_07_425794	293	12	large	large	JJ
10_1101-2021_01_07_425794	293	13	-	-	HYPH
10_1101-2021_01_07_425794	293	14	scale	scale	NN
10_1101-2021_01_07_425794	293	15	RNA	rna	NN
10_1101-2021_01_07_425794	293	16	sequencing	sequence	VBG
10_1101-2021_01_07_425794	293	17	experiments	experiment	NNS
10_1101-2021_01_07_425794	293	18	reveals	reveal	VBZ
10_1101-2021_01_07_425794	293	19	extensive	extensive	JJ
10_1101-2021_01_07_425794	293	20	transcriptional	transcriptional	JJ
10_1101-2021_01_07_425794	293	21	noise	noise	NN
10_1101-2021_01_07_425794	293	22	.	.	.
10_1101-2021_01_07_425794	294	1	Genome	Genome	NNP
10_1101-2021_01_07_425794	294	2	Biology	Biology	NNP
10_1101-2021_01_07_425794	294	3	,	,	,
10_1101-2021_01_07_425794	294	4	19(1):208	19(1):208	CD
10_1101-2021_01_07_425794	294	5	,	,	,
10_1101-2021_01_07_425794	294	6	2018	2018	CD
10_1101-2021_01_07_425794	294	7	.	.	.
10_1101-2021_01_07_425794	295	1	[	[	-LRB-
10_1101-2021_01_07_425794	295	2	8	8	CD
10_1101-2021_01_07_425794	295	3	]	]	-RRB-
10_1101-2021_01_07_425794	295	4	Daniel	Daniel	NNP
10_1101-2021_01_07_425794	295	5	R	R	NNP
10_1101-2021_01_07_425794	295	6	Zerbino	Zerbino	NNP
10_1101-2021_01_07_425794	295	7	,	,	,
10_1101-2021_01_07_425794	295	8	Premanand	Premanand	NNP
10_1101-2021_01_07_425794	295	9	Achuthan	Achuthan	NNP
10_1101-2021_01_07_425794	295	10	,	,	,
10_1101-2021_01_07_425794	295	11	Wasiu	Wasiu	NNP
10_1101-2021_01_07_425794	295	12	Akanni	Akanni	NNP
10_1101-2021_01_07_425794	295	13	,	,	,
10_1101-2021_01_07_425794	295	14	M	M	NNP
10_1101-2021_01_07_425794	295	15	Ridwan	Ridwan	NNP
10_1101-2021_01_07_425794	295	16	Amode	Amode	NNP
10_1101-2021_01_07_425794	295	17	,	,	,
10_1101-2021_01_07_425794	295	18	Daniel	Daniel	NNP
10_1101-2021_01_07_425794	295	19	Barrell	Barrell	NNP
10_1101-2021_01_07_425794	295	20	,	,	,
10_1101-2021_01_07_425794	295	21	Jyothish	Jyothish	NNP
10_1101-2021_01_07_425794	295	22	Bhai	Bhai	NNP
10_1101-2021_01_07_425794	295	23	,	,	,
10_1101-2021_01_07_425794	295	24	Konstantinos	Konstantinos	NNP
10_1101-2021_01_07_425794	295	25	Billis	Billis	NNP
10_1101-2021_01_07_425794	295	26	,	,	,
10_1101-2021_01_07_425794	295	27	Carla	Carla	NNP
10_1101-2021_01_07_425794	295	28	Cummins	Cummins	NNP
10_1101-2021_01_07_425794	295	29	,	,	,
10_1101-2021_01_07_425794	295	30	Astrid	Astrid	NNP
10_1101-2021_01_07_425794	295	31	Gall	Gall	NNP
10_1101-2021_01_07_425794	295	32	,	,	,
10_1101-2021_01_07_425794	295	33	Car-	Car-	NNP
10_1101-2021_01_07_425794	295	34	los	los	NNP
10_1101-2021_01_07_425794	295	35	Garćıa	Garćıa	NNP
10_1101-2021_01_07_425794	295	36	Girón	Girón	NNP
10_1101-2021_01_07_425794	295	37	,	,	,
10_1101-2021_01_07_425794	295	38	et	et	NNP
10_1101-2021_01_07_425794	295	39	al	al	NNP
10_1101-2021_01_07_425794	295	40	.	.	.
10_1101-2021_01_07_425794	296	1	Ensembl	Ensembl	NNP
10_1101-2021_01_07_425794	296	2	2018	2018	CD
10_1101-2021_01_07_425794	296	3	.	.	.
10_1101-2021_01_07_425794	297	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	297	2	Acids	Acids	NNP
10_1101-2021_01_07_425794	297	3	Research	Research	NNP
10_1101-2021_01_07_425794	297	4	,	,	,
10_1101-2021_01_07_425794	297	5	46(D1):D754–D761	46(D1):D754–D761	NNP
10_1101-2021_01_07_425794	297	6	,	,	,
10_1101-2021_01_07_425794	297	7	2018	2018	CD
10_1101-2021_01_07_425794	297	8	.	.	.
10_1101-2021_01_07_425794	298	1	21	21	CD
10_1101-2021_01_07_425794	298	2	.CC	.CC	:
10_1101-2021_01_07_425794	298	3	-	-	HYPH
10_1101-2021_01_07_425794	298	4	BY	by	IN
10_1101-2021_01_07_425794	298	5	-	-	HYPH
10_1101-2021_01_07_425794	298	6	NC	NC	NNP
10_1101-2021_01_07_425794	298	7	-	-	HYPH
10_1101-2021_01_07_425794	298	8	ND	ND	NNP
10_1101-2021_01_07_425794	298	9	4.0	4.0	CD
10_1101-2021_01_07_425794	298	10	International	international	JJ
10_1101-2021_01_07_425794	298	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	298	12	available	available	JJ
10_1101-2021_01_07_425794	298	13	under	under	IN
10_1101-2021_01_07_425794	298	14	a	a	DT
10_1101-2021_01_07_425794	298	15	(	(	-LRB-
10_1101-2021_01_07_425794	298	16	which	which	WDT
10_1101-2021_01_07_425794	298	17	was	be	VBD
10_1101-2021_01_07_425794	298	18	not	not	RB
10_1101-2021_01_07_425794	298	19	certified	certify	VBN
10_1101-2021_01_07_425794	298	20	by	by	IN
10_1101-2021_01_07_425794	298	21	peer	peer	NN
10_1101-2021_01_07_425794	298	22	review	review	NN
10_1101-2021_01_07_425794	298	23	)	)	-RRB-
10_1101-2021_01_07_425794	298	24	is	be	VBZ
10_1101-2021_01_07_425794	298	25	the	the	DT
10_1101-2021_01_07_425794	298	26	author	author	NN
10_1101-2021_01_07_425794	298	27	/	/	SYM
10_1101-2021_01_07_425794	298	28	funder	funder	NN
10_1101-2021_01_07_425794	298	29	,	,	,
10_1101-2021_01_07_425794	298	30	who	who	WP
10_1101-2021_01_07_425794	298	31	has	have	VBZ
10_1101-2021_01_07_425794	298	32	granted	grant	VBN
10_1101-2021_01_07_425794	298	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	298	34	a	a	DT
10_1101-2021_01_07_425794	298	35	license	license	NN
10_1101-2021_01_07_425794	298	36	to	to	TO
10_1101-2021_01_07_425794	298	37	display	display	VB
10_1101-2021_01_07_425794	298	38	the	the	DT
10_1101-2021_01_07_425794	298	39	preprint	preprint	NN
10_1101-2021_01_07_425794	298	40	in	in	IN
10_1101-2021_01_07_425794	298	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	298	42	.	.	.
10_1101-2021_01_07_425794	299	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	299	2	is	be	VBZ
10_1101-2021_01_07_425794	299	3	The	the	DT
10_1101-2021_01_07_425794	299	4	copyright	copyright	NN
10_1101-2021_01_07_425794	299	5	holder	holder	NN
10_1101-2021_01_07_425794	299	6	for	for	IN
10_1101-2021_01_07_425794	299	7	this	this	DT
10_1101-2021_01_07_425794	299	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	299	9	version	version	NN
10_1101-2021_01_07_425794	299	10	posted	post	VBD
10_1101-2021_01_07_425794	299	11	January	January	NNP
10_1101-2021_01_07_425794	299	12	8	8	CD
10_1101-2021_01_07_425794	299	13	,	,	,
10_1101-2021_01_07_425794	299	14	2021	2021	CD
10_1101-2021_01_07_425794	299	15	.	.	.
10_1101-2021_01_07_425794	299	16	;	;	:
10_1101-2021_01_07_425794	299	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	299	18	:	:	:
10_1101-2021_01_07_425794	299	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	299	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	299	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	299	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	299	23	[	[	-LRB-
10_1101-2021_01_07_425794	299	24	9	9	CD
10_1101-2021_01_07_425794	299	25	]	]	-RRB-
10_1101-2021_01_07_425794	299	26	Nuala	Nuala	NNP
10_1101-2021_01_07_425794	299	27	A	A	NNP
10_1101-2021_01_07_425794	299	28	O’Leary	O’Leary	NNP
10_1101-2021_01_07_425794	299	29	,	,	,
10_1101-2021_01_07_425794	299	30	Mathew	Mathew	NNP
10_1101-2021_01_07_425794	299	31	W	W	NNP
10_1101-2021_01_07_425794	299	32	Wright	Wright	NNP
10_1101-2021_01_07_425794	299	33	,	,	,
10_1101-2021_01_07_425794	299	34	J	J	NNP
10_1101-2021_01_07_425794	299	35	Rodney	Rodney	NNP
10_1101-2021_01_07_425794	299	36	Brister	Brister	NNP
10_1101-2021_01_07_425794	299	37	,	,	,
10_1101-2021_01_07_425794	299	38	Stacy	Stacy	NNP
10_1101-2021_01_07_425794	299	39	Ciufo	Ciufo	NNP
10_1101-2021_01_07_425794	299	40	,	,	,
10_1101-2021_01_07_425794	299	41	Diana	Diana	NNP
10_1101-2021_01_07_425794	299	42	Haddad	Haddad	NNP
10_1101-2021_01_07_425794	299	43	,	,	,
10_1101-2021_01_07_425794	299	44	Rich	Rich	NNP
10_1101-2021_01_07_425794	299	45	McVeigh	McVeigh	NNP
10_1101-2021_01_07_425794	299	46	,	,	,
10_1101-2021_01_07_425794	299	47	Bhanu	Bhanu	NNP
10_1101-2021_01_07_425794	299	48	Rajput	Rajput	NNP
10_1101-2021_01_07_425794	299	49	,	,	,
10_1101-2021_01_07_425794	299	50	Barbara	Barbara	NNP
10_1101-2021_01_07_425794	299	51	Robbertse	Robbertse	NNP
10_1101-2021_01_07_425794	299	52	,	,	,
10_1101-2021_01_07_425794	299	53	Brian	Brian	NNP
10_1101-2021_01_07_425794	299	54	Smith	Smith	NNP
10_1101-2021_01_07_425794	299	55	-	-	HYPH
10_1101-2021_01_07_425794	299	56	White	White	NNP
10_1101-2021_01_07_425794	299	57	,	,	,
10_1101-2021_01_07_425794	299	58	Danso	Danso	NNP
10_1101-2021_01_07_425794	299	59	Ako-	Ako-	NNP
10_1101-2021_01_07_425794	299	60	Adjei	adjei	UH
10_1101-2021_01_07_425794	299	61	,	,	,
10_1101-2021_01_07_425794	299	62	et	et	NNP
10_1101-2021_01_07_425794	299	63	al	al	NNP
10_1101-2021_01_07_425794	299	64	.	.	.
10_1101-2021_01_07_425794	300	1	Reference	reference	NN
10_1101-2021_01_07_425794	300	2	sequence	sequence	NN
10_1101-2021_01_07_425794	300	3	(	(	-LRB-
10_1101-2021_01_07_425794	300	4	RefSeq	RefSeq	NNP
10_1101-2021_01_07_425794	300	5	)	)	-RRB-
10_1101-2021_01_07_425794	300	6	database	database	NN
10_1101-2021_01_07_425794	300	7	at	at	IN
10_1101-2021_01_07_425794	300	8	NCBI	NCBI	NNP
10_1101-2021_01_07_425794	300	9	:	:	:
10_1101-2021_01_07_425794	300	10	current	current	JJ
10_1101-2021_01_07_425794	300	11	status	status	NN
10_1101-2021_01_07_425794	300	12	,	,	,
10_1101-2021_01_07_425794	300	13	taxo-	taxo-	JJ
10_1101-2021_01_07_425794	300	14	nomic	nomic	JJ
10_1101-2021_01_07_425794	300	15	expansion	expansion	NN
10_1101-2021_01_07_425794	300	16	,	,	,
10_1101-2021_01_07_425794	300	17	and	and	CC
10_1101-2021_01_07_425794	300	18	functional	functional	JJ
10_1101-2021_01_07_425794	300	19	annotation	annotation	NN
10_1101-2021_01_07_425794	300	20	.	.	.
10_1101-2021_01_07_425794	301	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	301	2	Acids	Acids	NNPS
10_1101-2021_01_07_425794	301	3	Research	Research	NNP
10_1101-2021_01_07_425794	301	4	,	,	,
10_1101-2021_01_07_425794	301	5	44(D1):D733	44(d1):d733	CD
10_1101-2021_01_07_425794	301	6	–	–	:
10_1101-2021_01_07_425794	301	7	D745	d745	NN
10_1101-2021_01_07_425794	301	8	,	,	,
10_1101-2021_01_07_425794	301	9	2016	2016	CD
10_1101-2021_01_07_425794	301	10	.	.	.
10_1101-2021_01_07_425794	302	1	[	[	-LRB-
10_1101-2021_01_07_425794	302	2	10	10	CD
10_1101-2021_01_07_425794	302	3	]	]	-RRB-
10_1101-2021_01_07_425794	302	4	Adam	Adam	NNP
10_1101-2021_01_07_425794	302	5	Frankish	Frankish	NNP
10_1101-2021_01_07_425794	302	6	,	,	,
10_1101-2021_01_07_425794	302	7	Mark	Mark	NNP
10_1101-2021_01_07_425794	302	8	Diekhans	Diekhans	NNPS
10_1101-2021_01_07_425794	302	9	,	,	,
10_1101-2021_01_07_425794	302	10	Anne	Anne	NNP
10_1101-2021_01_07_425794	302	11	-	-	HYPH
10_1101-2021_01_07_425794	302	12	Maud	Maud	NNP
10_1101-2021_01_07_425794	302	13	Ferreira	Ferreira	NNP
10_1101-2021_01_07_425794	302	14	,	,	,
10_1101-2021_01_07_425794	302	15	Rory	Rory	NNP
10_1101-2021_01_07_425794	302	16	Johnson	Johnson	NNP
10_1101-2021_01_07_425794	302	17	,	,	,
10_1101-2021_01_07_425794	302	18	Irwin	Irwin	NNP
10_1101-2021_01_07_425794	302	19	Jun-	Jun-	NNP
10_1101-2021_01_07_425794	302	20	greis	greis	NN
10_1101-2021_01_07_425794	302	21	,	,	,
10_1101-2021_01_07_425794	302	22	Jane	Jane	NNP
10_1101-2021_01_07_425794	302	23	Loveland	Loveland	NNP
10_1101-2021_01_07_425794	302	24	,	,	,
10_1101-2021_01_07_425794	302	25	Jonathan	Jonathan	NNP
10_1101-2021_01_07_425794	302	26	M	M	NNP
10_1101-2021_01_07_425794	302	27	Mudge	Mudge	NNP
10_1101-2021_01_07_425794	302	28	,	,	,
10_1101-2021_01_07_425794	302	29	Cristina	Cristina	NNP
10_1101-2021_01_07_425794	302	30	Sisu	Sisu	NNP
10_1101-2021_01_07_425794	302	31	,	,	,
10_1101-2021_01_07_425794	302	32	James	James	NNP
10_1101-2021_01_07_425794	302	33	Wright	Wright	NNP
10_1101-2021_01_07_425794	302	34	,	,	,
10_1101-2021_01_07_425794	302	35	Joel	Joel	NNP
10_1101-2021_01_07_425794	302	36	Arm-	Arm-	NNP
10_1101-2021_01_07_425794	302	37	strong	strong	RB
10_1101-2021_01_07_425794	302	38	,	,	,
10_1101-2021_01_07_425794	302	39	et	et	NNP
10_1101-2021_01_07_425794	302	40	al	al	NNP
10_1101-2021_01_07_425794	302	41	.	.	.
10_1101-2021_01_07_425794	303	1	GENCODE	gencode	JJ
10_1101-2021_01_07_425794	303	2	reference	reference	NN
10_1101-2021_01_07_425794	303	3	annotation	annotation	NN
10_1101-2021_01_07_425794	303	4	for	for	IN
10_1101-2021_01_07_425794	303	5	the	the	DT
10_1101-2021_01_07_425794	303	6	human	human	JJ
10_1101-2021_01_07_425794	303	7	and	and	CC
10_1101-2021_01_07_425794	303	8	mouse	mouse	NN
10_1101-2021_01_07_425794	303	9	genomes	genome	NNS
10_1101-2021_01_07_425794	303	10	.	.	.
10_1101-2021_01_07_425794	304	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	304	2	Acids	Acids	NNPS
10_1101-2021_01_07_425794	304	3	Research	Research	NNP
10_1101-2021_01_07_425794	304	4	,	,	,
10_1101-2021_01_07_425794	304	5	47(D1):D766–D773	47(d1):d766–d773	CD
10_1101-2021_01_07_425794	304	6	,	,	,
10_1101-2021_01_07_425794	304	7	2019	2019	CD
10_1101-2021_01_07_425794	304	8	.	.	.
10_1101-2021_01_07_425794	305	1	[	[	-LRB-
10_1101-2021_01_07_425794	305	2	11	11	CD
10_1101-2021_01_07_425794	305	3	]	]	-RRB-
10_1101-2021_01_07_425794	305	4	Christopher	Christopher	NNP
10_1101-2021_01_07_425794	305	5	M	M	NNP
10_1101-2021_01_07_425794	305	6	Lee	Lee	NNP
10_1101-2021_01_07_425794	305	7	,	,	,
10_1101-2021_01_07_425794	305	8	Galt	Galt	NNP
10_1101-2021_01_07_425794	305	9	P	P	NNP
10_1101-2021_01_07_425794	305	10	Barber	Barber	NNP
10_1101-2021_01_07_425794	305	11	,	,	,
10_1101-2021_01_07_425794	305	12	Jonathan	Jonathan	NNP
10_1101-2021_01_07_425794	305	13	Casper	Casper	NNP
10_1101-2021_01_07_425794	305	14	,	,	,
10_1101-2021_01_07_425794	305	15	Hiram	Hiram	NNP
10_1101-2021_01_07_425794	305	16	Clawson	Clawson	NNP
10_1101-2021_01_07_425794	305	17	,	,	,
10_1101-2021_01_07_425794	305	18	Mark	Mark	NNP
10_1101-2021_01_07_425794	305	19	Diekhans	Diekhans	NNPS
10_1101-2021_01_07_425794	305	20	,	,	,
10_1101-2021_01_07_425794	305	21	Jairo	Jairo	NNP
10_1101-2021_01_07_425794	305	22	N	N	NNP
10_1101-2021_01_07_425794	305	23	Gonzalez	Gonzalez	NNP
10_1101-2021_01_07_425794	305	24	,	,	,
10_1101-2021_01_07_425794	305	25	Angie	Angie	NNP
10_1101-2021_01_07_425794	305	26	S	S	NNP
10_1101-2021_01_07_425794	305	27	Hinrichs	Hinrichs	NNP
10_1101-2021_01_07_425794	305	28	,	,	,
10_1101-2021_01_07_425794	305	29	Brian	Brian	NNP
10_1101-2021_01_07_425794	305	30	T	T	NNP
10_1101-2021_01_07_425794	305	31	Lee	Lee	NNP
10_1101-2021_01_07_425794	305	32	,	,	,
10_1101-2021_01_07_425794	305	33	Luis	Luis	NNP
10_1101-2021_01_07_425794	305	34	R	R	NNP
10_1101-2021_01_07_425794	305	35	Nassar	Nassar	NNP
10_1101-2021_01_07_425794	305	36	,	,	,
10_1101-2021_01_07_425794	305	37	Con-	Con-	NNP
10_1101-2021_01_07_425794	305	38	ner	ner	NN
10_1101-2021_01_07_425794	305	39	C	C	NNP
10_1101-2021_01_07_425794	305	40	Powell	Powell	NNP
10_1101-2021_01_07_425794	305	41	,	,	,
10_1101-2021_01_07_425794	305	42	Brian	Brian	NNP
10_1101-2021_01_07_425794	305	43	J	J	NNP
10_1101-2021_01_07_425794	305	44	Raney	Raney	NNP
10_1101-2021_01_07_425794	305	45	,	,	,
10_1101-2021_01_07_425794	305	46	Kate	Kate	NNP
10_1101-2021_01_07_425794	305	47	R	R	NNP
10_1101-2021_01_07_425794	305	48	Rosenbloom	Rosenbloom	NNP
10_1101-2021_01_07_425794	305	49	,	,	,
10_1101-2021_01_07_425794	305	50	Daniel	Daniel	NNP
10_1101-2021_01_07_425794	305	51	Schmelter	Schmelter	NNP
10_1101-2021_01_07_425794	305	52	,	,	,
10_1101-2021_01_07_425794	305	53	Matthew	Matthew	NNP
10_1101-2021_01_07_425794	305	54	L	L	NNP
10_1101-2021_01_07_425794	305	55	Speir	Speir	NNP
10_1101-2021_01_07_425794	305	56	,	,	,
10_1101-2021_01_07_425794	305	57	Ann	Ann	NNP
10_1101-2021_01_07_425794	305	58	S	S	NNP
10_1101-2021_01_07_425794	305	59	Zweig	Zweig	NNP
10_1101-2021_01_07_425794	305	60	,	,	,
10_1101-2021_01_07_425794	305	61	David	David	NNP
10_1101-2021_01_07_425794	305	62	Haussler	Haussler	NNP
10_1101-2021_01_07_425794	305	63	,	,	,
10_1101-2021_01_07_425794	305	64	Maximilian	Maximilian	NNP
10_1101-2021_01_07_425794	305	65	Haeussler	Haeussler	NNP
10_1101-2021_01_07_425794	305	66	,	,	,
10_1101-2021_01_07_425794	305	67	Robert	Robert	NNP
10_1101-2021_01_07_425794	305	68	M	M	NNP
10_1101-2021_01_07_425794	305	69	Kuhn	Kuhn	NNP
10_1101-2021_01_07_425794	305	70	,	,	,
10_1101-2021_01_07_425794	305	71	and	and	CC
10_1101-2021_01_07_425794	305	72	W	W	NNP
10_1101-2021_01_07_425794	305	73	J	J	NNP
10_1101-2021_01_07_425794	305	74	Kent	Kent	NNP
10_1101-2021_01_07_425794	305	75	.	.	.
10_1101-2021_01_07_425794	306	1	UCSC	UCSC	NNS
10_1101-2021_01_07_425794	306	2	Genome	Genome	NNP
10_1101-2021_01_07_425794	306	3	Browser	Browser	NNP
10_1101-2021_01_07_425794	306	4	enters	enter	VBZ
10_1101-2021_01_07_425794	306	5	20th	20th	JJ
10_1101-2021_01_07_425794	306	6	year	year	NN
10_1101-2021_01_07_425794	306	7	.	.	.
10_1101-2021_01_07_425794	307	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	307	2	Acids	Acids	NNP
10_1101-2021_01_07_425794	307	3	Research	Research	NNP
10_1101-2021_01_07_425794	307	4	,	,	,
10_1101-2021_01_07_425794	307	5	48(D1):D756–D761	48(d1):d756–d761	CD
10_1101-2021_01_07_425794	307	6	,	,	,
10_1101-2021_01_07_425794	307	7	2020	2020	CD
10_1101-2021_01_07_425794	307	8	.	.	.
10_1101-2021_01_07_425794	308	1	[	[	-LRB-
10_1101-2021_01_07_425794	308	2	12	12	CD
10_1101-2021_01_07_425794	308	3	]	]	-RRB-
10_1101-2021_01_07_425794	308	4	Po	Po	NNP
10_1101-2021_01_07_425794	308	5	-	-	HYPH
10_1101-2021_01_07_425794	308	6	Yen	Yen	NNP
10_1101-2021_01_07_425794	308	7	Wu	Wu	NNP
10_1101-2021_01_07_425794	308	8	,	,	,
10_1101-2021_01_07_425794	308	9	John	John	NNP
10_1101-2021_01_07_425794	308	10	H	H	NNP
10_1101-2021_01_07_425794	308	11	Phan	Phan	NNP
10_1101-2021_01_07_425794	308	12	,	,	,
10_1101-2021_01_07_425794	308	13	and	and	CC
10_1101-2021_01_07_425794	308	14	May	May	NNP
10_1101-2021_01_07_425794	308	15	D	D	NNP
10_1101-2021_01_07_425794	308	16	Wang	Wang	NNP
10_1101-2021_01_07_425794	308	17	.	.	.
10_1101-2021_01_07_425794	309	1	Assessing	assess	VBG
10_1101-2021_01_07_425794	309	2	the	the	DT
10_1101-2021_01_07_425794	309	3	impact	impact	NN
10_1101-2021_01_07_425794	309	4	of	of	IN
10_1101-2021_01_07_425794	309	5	human	human	JJ
10_1101-2021_01_07_425794	309	6	genome	genome	JJ
10_1101-2021_01_07_425794	309	7	annotation	annotation	NN
10_1101-2021_01_07_425794	309	8	choice	choice	NN
10_1101-2021_01_07_425794	309	9	on	on	IN
10_1101-2021_01_07_425794	309	10	RNA	RNA	NNP
10_1101-2021_01_07_425794	309	11	-	-	HYPH
10_1101-2021_01_07_425794	309	12	seq	seq	NN
10_1101-2021_01_07_425794	309	13	expression	expression	NN
10_1101-2021_01_07_425794	309	14	estimates	estimate	NNS
10_1101-2021_01_07_425794	309	15	.	.	.
10_1101-2021_01_07_425794	310	1	BMC	BMC	NNP
10_1101-2021_01_07_425794	310	2	Bioinformatics	Bioinformatics	NNP
10_1101-2021_01_07_425794	310	3	,	,	,
10_1101-2021_01_07_425794	310	4	14(11):S8	14(11):s8	CD
10_1101-2021_01_07_425794	310	5	,	,	,
10_1101-2021_01_07_425794	310	6	2013	2013	CD
10_1101-2021_01_07_425794	310	7	.	.	.
10_1101-2021_01_07_425794	311	1	[	[	-LRB-
10_1101-2021_01_07_425794	311	2	13	13	CD
10_1101-2021_01_07_425794	311	3	]	]	-RRB-
10_1101-2021_01_07_425794	311	4	Shanrong	Shanrong	NNP
10_1101-2021_01_07_425794	311	5	Zhao	Zhao	NNP
10_1101-2021_01_07_425794	311	6	and	and	CC
10_1101-2021_01_07_425794	311	7	Baohong	Baohong	NNP
10_1101-2021_01_07_425794	311	8	Zhang	Zhang	NNP
10_1101-2021_01_07_425794	311	9	.	.	.
10_1101-2021_01_07_425794	312	1	A	a	DT
10_1101-2021_01_07_425794	312	2	comprehensive	comprehensive	JJ
10_1101-2021_01_07_425794	312	3	evaluation	evaluation	NN
10_1101-2021_01_07_425794	312	4	of	of	IN
10_1101-2021_01_07_425794	312	5	ensembl	ensembl	NNP
10_1101-2021_01_07_425794	312	6	,	,	,
10_1101-2021_01_07_425794	312	7	Ref-	Ref-	NNP
10_1101-2021_01_07_425794	312	8	Seq	Seq	NNP
10_1101-2021_01_07_425794	312	9	,	,	,
10_1101-2021_01_07_425794	312	10	and	and	CC
10_1101-2021_01_07_425794	312	11	UCSC	UCSC	NNP
10_1101-2021_01_07_425794	312	12	annotations	annotation	NNS
10_1101-2021_01_07_425794	312	13	in	in	IN
10_1101-2021_01_07_425794	312	14	the	the	DT
10_1101-2021_01_07_425794	312	15	context	context	NN
10_1101-2021_01_07_425794	312	16	of	of	IN
10_1101-2021_01_07_425794	312	17	RNA	RNA	NNP
10_1101-2021_01_07_425794	312	18	-	-	HYPH
10_1101-2021_01_07_425794	312	19	seq	seq	NN
10_1101-2021_01_07_425794	312	20	read	read	VBP
10_1101-2021_01_07_425794	312	21	mapping	mapping	NN
10_1101-2021_01_07_425794	312	22	and	and	CC
10_1101-2021_01_07_425794	312	23	gene	gene	NN
10_1101-2021_01_07_425794	312	24	quantification	quantification	NN
10_1101-2021_01_07_425794	312	25	.	.	.
10_1101-2021_01_07_425794	313	1	BMC	BMC	NNP
10_1101-2021_01_07_425794	313	2	Genomics	Genomics	NNP
10_1101-2021_01_07_425794	313	3	,	,	,
10_1101-2021_01_07_425794	313	4	16(1):97	16(1):97	NNP
10_1101-2021_01_07_425794	313	5	,	,	,
10_1101-2021_01_07_425794	313	6	2015	2015	CD
10_1101-2021_01_07_425794	313	7	.	.	.
10_1101-2021_01_07_425794	314	1	[	[	-LRB-
10_1101-2021_01_07_425794	314	2	14	14	CD
10_1101-2021_01_07_425794	314	3	]	]	-RRB-
10_1101-2021_01_07_425794	314	4	Leming	Leming	NNP
10_1101-2021_01_07_425794	314	5	Shi	Shi	NNP
10_1101-2021_01_07_425794	314	6	,	,	,
10_1101-2021_01_07_425794	314	7	Gregory	Gregory	NNP
10_1101-2021_01_07_425794	314	8	Campbell	Campbell	NNP
10_1101-2021_01_07_425794	314	9	,	,	,
10_1101-2021_01_07_425794	314	10	Wendell	Wendell	NNP
10_1101-2021_01_07_425794	314	11	D	D	NNP
10_1101-2021_01_07_425794	314	12	Jones	Jones	NNP
10_1101-2021_01_07_425794	314	13	,	,	,
10_1101-2021_01_07_425794	314	14	Fabien	Fabien	NNP
10_1101-2021_01_07_425794	314	15	Campagne	Campagne	NNP
10_1101-2021_01_07_425794	314	16	,	,	,
10_1101-2021_01_07_425794	314	17	Zhining	Zhining	NNP
10_1101-2021_01_07_425794	314	18	Wen	Wen	NNP
10_1101-2021_01_07_425794	314	19	,	,	,
10_1101-2021_01_07_425794	314	20	Stephen	Stephen	NNP
10_1101-2021_01_07_425794	314	21	J	J	NNP
10_1101-2021_01_07_425794	314	22	Walker	Walker	NNP
10_1101-2021_01_07_425794	314	23	,	,	,
10_1101-2021_01_07_425794	314	24	Zhenqiang	Zhenqiang	NNP
10_1101-2021_01_07_425794	314	25	Su	Su	NNP
10_1101-2021_01_07_425794	314	26	,	,	,
10_1101-2021_01_07_425794	314	27	Tzu	Tzu	NNP
10_1101-2021_01_07_425794	314	28	-	-	HYPH
10_1101-2021_01_07_425794	314	29	Ming	Ming	NNP
10_1101-2021_01_07_425794	314	30	Chu	Chu	NNP
10_1101-2021_01_07_425794	314	31	,	,	,
10_1101-2021_01_07_425794	314	32	Federico	Federico	NNP
10_1101-2021_01_07_425794	314	33	M	M	NNP
10_1101-2021_01_07_425794	314	34	Goodsaid	Goodsaid	NNP
10_1101-2021_01_07_425794	314	35	,	,	,
10_1101-2021_01_07_425794	314	36	Lajos	Lajos	NNP
10_1101-2021_01_07_425794	314	37	Pusz-	Pusz-	NNP
10_1101-2021_01_07_425794	314	38	tai	tai	NNP
10_1101-2021_01_07_425794	314	39	,	,	,
10_1101-2021_01_07_425794	314	40	et	et	NNP
10_1101-2021_01_07_425794	314	41	al	al	NNP
10_1101-2021_01_07_425794	314	42	.	.	.
10_1101-2021_01_07_425794	315	1	The	the	DT
10_1101-2021_01_07_425794	315	2	MicroArray	MicroArray	NNP
10_1101-2021_01_07_425794	315	3	Quality	Quality	NNP
10_1101-2021_01_07_425794	315	4	Control	Control	NNP
10_1101-2021_01_07_425794	315	5	(	(	-LRB-
10_1101-2021_01_07_425794	315	6	MAQC)-II	maqc)-ii	JJ
10_1101-2021_01_07_425794	315	7	study	study	NN
10_1101-2021_01_07_425794	315	8	of	of	IN
10_1101-2021_01_07_425794	315	9	common	common	JJ
10_1101-2021_01_07_425794	315	10	practices	practice	NNS
10_1101-2021_01_07_425794	315	11	for	for	IN
10_1101-2021_01_07_425794	315	12	the	the	DT
10_1101-2021_01_07_425794	315	13	development	development	NN
10_1101-2021_01_07_425794	315	14	and	and	CC
10_1101-2021_01_07_425794	315	15	validation	validation	NN
10_1101-2021_01_07_425794	315	16	of	of	IN
10_1101-2021_01_07_425794	315	17	microarray	microarray	NNP
10_1101-2021_01_07_425794	315	18	-	-	HYPH
10_1101-2021_01_07_425794	315	19	based	base	VBN
10_1101-2021_01_07_425794	315	20	predictive	predictive	JJ
10_1101-2021_01_07_425794	315	21	models	model	NNS
10_1101-2021_01_07_425794	315	22	.	.	.
10_1101-2021_01_07_425794	316	1	Nature	Nature	NNP
10_1101-2021_01_07_425794	316	2	Biotechnology	Biotechnology	NNP
10_1101-2021_01_07_425794	316	3	,	,	,
10_1101-2021_01_07_425794	316	4	28(8):827–838	28(8):827–838	CD
10_1101-2021_01_07_425794	316	5	,	,	,
10_1101-2021_01_07_425794	316	6	2010	2010	CD
10_1101-2021_01_07_425794	316	7	.	.	.
10_1101-2021_01_07_425794	317	1	[	[	-LRB-
10_1101-2021_01_07_425794	317	2	15	15	CD
10_1101-2021_01_07_425794	317	3	]	]	-RRB-
10_1101-2021_01_07_425794	317	4	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	317	5	Consortium	Consortium	NNP
10_1101-2021_01_07_425794	317	6	,	,	,
10_1101-2021_01_07_425794	317	7	Leming	Leming	NNP
10_1101-2021_01_07_425794	317	8	Shi	Shi	NNP
10_1101-2021_01_07_425794	317	9	,	,	,
10_1101-2021_01_07_425794	317	10	Laura	Laura	NNP
10_1101-2021_01_07_425794	317	11	H	H	NNP
10_1101-2021_01_07_425794	317	12	Reid	Reid	NNP
10_1101-2021_01_07_425794	317	13	,	,	,
10_1101-2021_01_07_425794	317	14	Wendell	Wendell	NNP
10_1101-2021_01_07_425794	317	15	D	D	NNP
10_1101-2021_01_07_425794	317	16	Jones	Jones	NNP
10_1101-2021_01_07_425794	317	17	,	,	,
10_1101-2021_01_07_425794	317	18	Richard	Richard	NNP
10_1101-2021_01_07_425794	317	19	Shippy	Shippy	NNP
10_1101-2021_01_07_425794	317	20	,	,	,
10_1101-2021_01_07_425794	317	21	Janet	Janet	NNP
10_1101-2021_01_07_425794	317	22	A	A	NNP
10_1101-2021_01_07_425794	317	23	Warrington	Warrington	NNP
10_1101-2021_01_07_425794	317	24	,	,	,
10_1101-2021_01_07_425794	317	25	Shawn	Shawn	NNP
10_1101-2021_01_07_425794	317	26	C	C	NNP
10_1101-2021_01_07_425794	317	27	Baker	Baker	NNP
10_1101-2021_01_07_425794	317	28	,	,	,
10_1101-2021_01_07_425794	317	29	Patrick	Patrick	NNP
10_1101-2021_01_07_425794	317	30	J	J	NNP
10_1101-2021_01_07_425794	317	31	Collins	Collins	NNP
10_1101-2021_01_07_425794	317	32	,	,	,
10_1101-2021_01_07_425794	317	33	Francoise	Francoise	NNP
10_1101-2021_01_07_425794	317	34	de	de	IN
10_1101-2021_01_07_425794	317	35	Longueville	Longueville	NNP
10_1101-2021_01_07_425794	317	36	,	,	,
10_1101-2021_01_07_425794	317	37	Ernest	Ernest	NNP
10_1101-2021_01_07_425794	317	38	S	S	NNP
10_1101-2021_01_07_425794	317	39	Kawasaki	Kawasaki	NNP
10_1101-2021_01_07_425794	317	40	,	,	,
10_1101-2021_01_07_425794	317	41	et	et	NNP
10_1101-2021_01_07_425794	317	42	al	al	NNP
10_1101-2021_01_07_425794	317	43	.	.	.
10_1101-2021_01_07_425794	318	1	The	the	DT
10_1101-2021_01_07_425794	318	2	MicroArray	MicroArray	NNP
10_1101-2021_01_07_425794	318	3	Quality	Quality	NNP
10_1101-2021_01_07_425794	318	4	Control	Control	NNP
10_1101-2021_01_07_425794	318	5	(	(	-LRB-
10_1101-2021_01_07_425794	318	6	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	318	7	)	)	-RRB-
10_1101-2021_01_07_425794	318	8	project	project	NN
10_1101-2021_01_07_425794	318	9	shows	show	VBZ
10_1101-2021_01_07_425794	318	10	inter-	inter-	NN
10_1101-2021_01_07_425794	318	11	and	and	CC
10_1101-2021_01_07_425794	318	12	intraplatform	intraplatform	VB
10_1101-2021_01_07_425794	318	13	reproducibility	reproducibility	NN
10_1101-2021_01_07_425794	318	14	of	of	IN
10_1101-2021_01_07_425794	318	15	gene	gene	NN
10_1101-2021_01_07_425794	318	16	expression	expression	NN
10_1101-2021_01_07_425794	318	17	measurements	measurement	NNS
10_1101-2021_01_07_425794	318	18	.	.	.
10_1101-2021_01_07_425794	319	1	Nature	Nature	NNP
10_1101-2021_01_07_425794	319	2	Biotechnology	Biotechnology	NNP
10_1101-2021_01_07_425794	319	3	,	,	,
10_1101-2021_01_07_425794	319	4	24(9):1151–1161	24(9):1151–1161	CD
10_1101-2021_01_07_425794	319	5	,	,	,
10_1101-2021_01_07_425794	319	6	2006	2006	CD
10_1101-2021_01_07_425794	319	7	.	.	.
10_1101-2021_01_07_425794	320	1	[	[	-LRB-
10_1101-2021_01_07_425794	320	2	16	16	CD
10_1101-2021_01_07_425794	320	3	]	]	-RRB-
10_1101-2021_01_07_425794	320	4	Yang	Yang	NNP
10_1101-2021_01_07_425794	320	5	Liao	Liao	NNP
10_1101-2021_01_07_425794	320	6	and	and	CC
10_1101-2021_01_07_425794	320	7	Wei	Wei	NNP
10_1101-2021_01_07_425794	320	8	Shi	Shi	NNP
10_1101-2021_01_07_425794	320	9	.	.	.
10_1101-2021_01_07_425794	321	1	seqc	seqc	NN
10_1101-2021_01_07_425794	321	2	:	:	:
10_1101-2021_01_07_425794	321	3	RNA	RNA	NNP
10_1101-2021_01_07_425794	321	4	-	-	HYPH
10_1101-2021_01_07_425794	321	5	seq	seq	NN
10_1101-2021_01_07_425794	321	6	data	datum	NNS
10_1101-2021_01_07_425794	321	7	generated	generate	VBN
10_1101-2021_01_07_425794	321	8	from	from	IN
10_1101-2021_01_07_425794	321	9	SEQC	SEQC	NNP
10_1101-2021_01_07_425794	321	10	(	(	-LRB-
10_1101-2021_01_07_425794	321	11	MAQC	MAQC	NNP
10_1101-2021_01_07_425794	321	12	-	-	HYPH
10_1101-2021_01_07_425794	321	13	III	III	NNP
10_1101-2021_01_07_425794	321	14	)	)	-RRB-
10_1101-2021_01_07_425794	321	15	study	study	NN
10_1101-2021_01_07_425794	321	16	,	,	,
10_1101-2021_01_07_425794	321	17	2020	2020	CD
10_1101-2021_01_07_425794	321	18	.	.	.
10_1101-2021_01_07_425794	322	1	R	r	NN
10_1101-2021_01_07_425794	322	2	package	package	NN
10_1101-2021_01_07_425794	322	3	version	version	NN
10_1101-2021_01_07_425794	322	4	1.22.0	1.22.0	CD
10_1101-2021_01_07_425794	322	5	.	.	.
10_1101-2021_01_07_425794	322	6	http://bioconductor.org/packages/release/data/experiment/html/seqc.html	http://bioconductor.org/packages/release/data/experiment/html/seqc.html	NNP
10_1101-2021_01_07_425794	322	7	.	.	.
10_1101-2021_01_07_425794	323	1	22	22	CD
10_1101-2021_01_07_425794	323	2	.CC	.CC	:
10_1101-2021_01_07_425794	323	3	-	-	HYPH
10_1101-2021_01_07_425794	323	4	BY	by	IN
10_1101-2021_01_07_425794	323	5	-	-	HYPH
10_1101-2021_01_07_425794	323	6	NC	NC	NNP
10_1101-2021_01_07_425794	323	7	-	-	HYPH
10_1101-2021_01_07_425794	323	8	ND	ND	NNP
10_1101-2021_01_07_425794	323	9	4.0	4.0	CD
10_1101-2021_01_07_425794	323	10	International	international	JJ
10_1101-2021_01_07_425794	323	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	323	12	available	available	JJ
10_1101-2021_01_07_425794	323	13	under	under	IN
10_1101-2021_01_07_425794	323	14	a	a	DT
10_1101-2021_01_07_425794	323	15	(	(	-LRB-
10_1101-2021_01_07_425794	323	16	which	which	WDT
10_1101-2021_01_07_425794	323	17	was	be	VBD
10_1101-2021_01_07_425794	323	18	not	not	RB
10_1101-2021_01_07_425794	323	19	certified	certify	VBN
10_1101-2021_01_07_425794	323	20	by	by	IN
10_1101-2021_01_07_425794	323	21	peer	peer	NN
10_1101-2021_01_07_425794	323	22	review	review	NN
10_1101-2021_01_07_425794	323	23	)	)	-RRB-
10_1101-2021_01_07_425794	323	24	is	be	VBZ
10_1101-2021_01_07_425794	323	25	the	the	DT
10_1101-2021_01_07_425794	323	26	author	author	NN
10_1101-2021_01_07_425794	323	27	/	/	SYM
10_1101-2021_01_07_425794	323	28	funder	funder	NN
10_1101-2021_01_07_425794	323	29	,	,	,
10_1101-2021_01_07_425794	323	30	who	who	WP
10_1101-2021_01_07_425794	323	31	has	have	VBZ
10_1101-2021_01_07_425794	323	32	granted	grant	VBN
10_1101-2021_01_07_425794	323	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	323	34	a	a	DT
10_1101-2021_01_07_425794	323	35	license	license	NN
10_1101-2021_01_07_425794	323	36	to	to	TO
10_1101-2021_01_07_425794	323	37	display	display	VB
10_1101-2021_01_07_425794	323	38	the	the	DT
10_1101-2021_01_07_425794	323	39	preprint	preprint	NN
10_1101-2021_01_07_425794	323	40	in	in	IN
10_1101-2021_01_07_425794	323	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	323	42	.	.	.
10_1101-2021_01_07_425794	324	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	324	2	is	be	VBZ
10_1101-2021_01_07_425794	324	3	The	the	DT
10_1101-2021_01_07_425794	324	4	copyright	copyright	NN
10_1101-2021_01_07_425794	324	5	holder	holder	NN
10_1101-2021_01_07_425794	324	6	for	for	IN
10_1101-2021_01_07_425794	324	7	this	this	DT
10_1101-2021_01_07_425794	324	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	324	9	version	version	NN
10_1101-2021_01_07_425794	324	10	posted	post	VBD
10_1101-2021_01_07_425794	324	11	January	January	NNP
10_1101-2021_01_07_425794	324	12	8	8	CD
10_1101-2021_01_07_425794	324	13	,	,	,
10_1101-2021_01_07_425794	324	14	2021	2021	CD
10_1101-2021_01_07_425794	324	15	.	.	.
10_1101-2021_01_07_425794	324	16	;	;	:
10_1101-2021_01_07_425794	324	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	324	18	:	:	:
10_1101-2021_01_07_425794	324	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	324	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	324	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	324	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	324	23	[	[	-LRB-
10_1101-2021_01_07_425794	324	24	17	17	CD
10_1101-2021_01_07_425794	324	25	]	]	-RRB-
10_1101-2021_01_07_425794	324	26	Marc	Marc	NNP
10_1101-2021_01_07_425794	324	27	Carlson	Carlson	NNP
10_1101-2021_01_07_425794	324	28	.	.	.
10_1101-2021_01_07_425794	325	1	org.Hs.eg.db	org.hs.eg.db	LS
10_1101-2021_01_07_425794	325	2	:	:	:
10_1101-2021_01_07_425794	325	3	Genome	genome	VB
10_1101-2021_01_07_425794	325	4	wide	wide	JJ
10_1101-2021_01_07_425794	325	5	annota-	annota-	JJ
10_1101-2021_01_07_425794	325	6	tion	tion	NN
10_1101-2021_01_07_425794	325	7	for	for	IN
10_1101-2021_01_07_425794	325	8	Human	Human	NNP
10_1101-2021_01_07_425794	325	9	,	,	,
10_1101-2021_01_07_425794	325	10	2020	2020	CD
10_1101-2021_01_07_425794	325	11	.	.	.
10_1101-2021_01_07_425794	326	1	R	r	NN
10_1101-2021_01_07_425794	326	2	package	package	NN
10_1101-2021_01_07_425794	326	3	version	version	NN
10_1101-2021_01_07_425794	326	4	3.11.4	3.11.4	CD
10_1101-2021_01_07_425794	326	5	.	.	.
10_1101-2021_01_07_425794	326	6	https://www.bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html	https://www.bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html	NNP
10_1101-2021_01_07_425794	326	7	.	.	.
10_1101-2021_01_07_425794	327	1	[	[	-LRB-
10_1101-2021_01_07_425794	327	2	18	18	CD
10_1101-2021_01_07_425794	327	3	]	]	-RRB-
10_1101-2021_01_07_425794	327	4	Matthew	Matthew	NNP
10_1101-2021_01_07_425794	327	5	E	E	NNP
10_1101-2021_01_07_425794	327	6	Ritchie	Ritchie	NNP
10_1101-2021_01_07_425794	327	7	,	,	,
10_1101-2021_01_07_425794	327	8	Belinda	Belinda	NNP
10_1101-2021_01_07_425794	327	9	Phipson	Phipson	NNP
10_1101-2021_01_07_425794	327	10	,	,	,
10_1101-2021_01_07_425794	327	11	Di	Di	NNP
10_1101-2021_01_07_425794	327	12	Wu	Wu	NNP
10_1101-2021_01_07_425794	327	13	,	,	,
10_1101-2021_01_07_425794	327	14	Yifang	Yifang	NNP
10_1101-2021_01_07_425794	327	15	Hu	Hu	NNP
10_1101-2021_01_07_425794	327	16	,	,	,
10_1101-2021_01_07_425794	327	17	Charity	Charity	NNP
10_1101-2021_01_07_425794	327	18	W	W	NNP
10_1101-2021_01_07_425794	327	19	Law	Law	NNP
10_1101-2021_01_07_425794	327	20	,	,	,
10_1101-2021_01_07_425794	327	21	Wei	Wei	NNP
10_1101-2021_01_07_425794	327	22	Shi	Shi	NNP
10_1101-2021_01_07_425794	327	23	,	,	,
10_1101-2021_01_07_425794	327	24	and	and	CC
10_1101-2021_01_07_425794	327	25	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	327	26	K	K	NNP
10_1101-2021_01_07_425794	327	27	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	327	28	.	.	.
10_1101-2021_01_07_425794	328	1	limma	limma	NNP
10_1101-2021_01_07_425794	328	2	powers	powers	NNP
10_1101-2021_01_07_425794	328	3	differential	differential	VBP
10_1101-2021_01_07_425794	328	4	expression	expression	NN
10_1101-2021_01_07_425794	328	5	analyses	analysis	NNS
10_1101-2021_01_07_425794	328	6	for	for	IN
10_1101-2021_01_07_425794	328	7	RNA-	RNA-	NNP
10_1101-2021_01_07_425794	328	8	sequencing	sequencing	NN
10_1101-2021_01_07_425794	328	9	and	and	CC
10_1101-2021_01_07_425794	328	10	microarray	microarray	JJ
10_1101-2021_01_07_425794	328	11	studies	study	NNS
10_1101-2021_01_07_425794	328	12	.	.	.
10_1101-2021_01_07_425794	329	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	329	2	Acids	Acids	NNPS
10_1101-2021_01_07_425794	329	3	Research	Research	NNP
10_1101-2021_01_07_425794	329	4	,	,	,
10_1101-2021_01_07_425794	329	5	43(7):e47–e47	43(7):e47–e47	CD
10_1101-2021_01_07_425794	329	6	,	,	,
10_1101-2021_01_07_425794	329	7	2015	2015	CD
10_1101-2021_01_07_425794	329	8	.	.	.
10_1101-2021_01_07_425794	330	1	[	[	-LRB-
10_1101-2021_01_07_425794	330	2	19	19	CD
10_1101-2021_01_07_425794	330	3	]	]	-RRB-
10_1101-2021_01_07_425794	330	4	Wolfgang	Wolfgang	NNP
10_1101-2021_01_07_425794	330	5	Huber	Huber	NNP
10_1101-2021_01_07_425794	330	6	,	,	,
10_1101-2021_01_07_425794	330	7	Vincent	Vincent	NNP
10_1101-2021_01_07_425794	330	8	J	J	NNP
10_1101-2021_01_07_425794	330	9	Carey	Carey	NNP
10_1101-2021_01_07_425794	330	10	,	,	,
10_1101-2021_01_07_425794	330	11	Robert	Robert	NNP
10_1101-2021_01_07_425794	330	12	Gentleman	Gentleman	NNP
10_1101-2021_01_07_425794	330	13	,	,	,
10_1101-2021_01_07_425794	330	14	Simon	Simon	NNP
10_1101-2021_01_07_425794	330	15	Anders	Anders	NNP
10_1101-2021_01_07_425794	330	16	,	,	,
10_1101-2021_01_07_425794	330	17	Marc	Marc	NNP
10_1101-2021_01_07_425794	330	18	Carlson	Carlson	NNP
10_1101-2021_01_07_425794	330	19	,	,	,
10_1101-2021_01_07_425794	330	20	Benilton	Benilton	NNP
10_1101-2021_01_07_425794	330	21	S	S	NNP
10_1101-2021_01_07_425794	330	22	Carvalho	Carvalho	NNP
10_1101-2021_01_07_425794	330	23	,	,	,
10_1101-2021_01_07_425794	330	24	Hector	Hector	NNP
10_1101-2021_01_07_425794	330	25	Corrada	Corrada	NNP
10_1101-2021_01_07_425794	330	26	Bravo	Bravo	NNP
10_1101-2021_01_07_425794	330	27	,	,	,
10_1101-2021_01_07_425794	330	28	Sean	Sean	NNP
10_1101-2021_01_07_425794	330	29	Davis	Davis	NNP
10_1101-2021_01_07_425794	330	30	,	,	,
10_1101-2021_01_07_425794	330	31	Laurent	Laurent	NNP
10_1101-2021_01_07_425794	330	32	Gatto	Gatto	NNP
10_1101-2021_01_07_425794	330	33	,	,	,
10_1101-2021_01_07_425794	330	34	Thomas	Thomas	NNP
10_1101-2021_01_07_425794	330	35	Girke	Girke	NNP
10_1101-2021_01_07_425794	330	36	,	,	,
10_1101-2021_01_07_425794	330	37	et	et	NNP
10_1101-2021_01_07_425794	330	38	al	al	NNP
10_1101-2021_01_07_425794	330	39	.	.	.
10_1101-2021_01_07_425794	331	1	Orchestrating	orchestrate	VBG
10_1101-2021_01_07_425794	331	2	high	high	JJ
10_1101-2021_01_07_425794	331	3	-	-	HYPH
10_1101-2021_01_07_425794	331	4	throughput	throughput	NN
10_1101-2021_01_07_425794	331	5	genomic	genomic	JJ
10_1101-2021_01_07_425794	331	6	analysis	analysis	NN
10_1101-2021_01_07_425794	331	7	with	with	IN
10_1101-2021_01_07_425794	331	8	Bioconductor	Bioconductor	NNP
10_1101-2021_01_07_425794	331	9	.	.	.
10_1101-2021_01_07_425794	332	1	Nature	Nature	NNP
10_1101-2021_01_07_425794	332	2	Methods	Methods	NNPS
10_1101-2021_01_07_425794	332	3	,	,	,
10_1101-2021_01_07_425794	332	4	12(2):115	12(2):115	CD
10_1101-2021_01_07_425794	332	5	,	,	,
10_1101-2021_01_07_425794	332	6	2015	2015	CD
10_1101-2021_01_07_425794	332	7	.	.	.
10_1101-2021_01_07_425794	333	1	[	[	-LRB-
10_1101-2021_01_07_425794	333	2	20	20	CD
10_1101-2021_01_07_425794	333	3	]	]	-RRB-
10_1101-2021_01_07_425794	333	4	Yang	Yang	NNP
10_1101-2021_01_07_425794	333	5	Liao	Liao	NNP
10_1101-2021_01_07_425794	333	6	,	,	,
10_1101-2021_01_07_425794	333	7	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	333	8	K	K	NNP
10_1101-2021_01_07_425794	333	9	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	333	10	,	,	,
10_1101-2021_01_07_425794	333	11	and	and	CC
10_1101-2021_01_07_425794	333	12	Wei	Wei	NNP
10_1101-2021_01_07_425794	333	13	Shi	Shi	NNP
10_1101-2021_01_07_425794	333	14	.	.	.
10_1101-2021_01_07_425794	334	1	The	the	DT
10_1101-2021_01_07_425794	334	2	Subread	Subread	NNP
10_1101-2021_01_07_425794	334	3	aligner	aligner	NN
10_1101-2021_01_07_425794	334	4	:	:	:
10_1101-2021_01_07_425794	334	5	fast	fast	RB
10_1101-2021_01_07_425794	334	6	,	,	,
10_1101-2021_01_07_425794	334	7	accurate	accurate	JJ
10_1101-2021_01_07_425794	334	8	and	and	CC
10_1101-2021_01_07_425794	334	9	scalable	scalable	JJ
10_1101-2021_01_07_425794	334	10	read	read	VBN
10_1101-2021_01_07_425794	334	11	mapping	mapping	NN
10_1101-2021_01_07_425794	334	12	by	by	IN
10_1101-2021_01_07_425794	334	13	seed	seed	NN
10_1101-2021_01_07_425794	334	14	-	-	HYPH
10_1101-2021_01_07_425794	334	15	and	and	CC
10_1101-2021_01_07_425794	334	16	-	-	HYPH
10_1101-2021_01_07_425794	334	17	vote	vote	NN
10_1101-2021_01_07_425794	334	18	.	.	.
10_1101-2021_01_07_425794	335	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	335	2	Acids	Acids	NNPS
10_1101-2021_01_07_425794	335	3	Research	Research	NNP
10_1101-2021_01_07_425794	335	4	,	,	,
10_1101-2021_01_07_425794	335	5	41(10):e108–e108	41(10):e108–e108	CD
10_1101-2021_01_07_425794	335	6	,	,	,
10_1101-2021_01_07_425794	335	7	2013	2013	CD
10_1101-2021_01_07_425794	335	8	.	.	.
10_1101-2021_01_07_425794	336	1	[	[	-LRB-
10_1101-2021_01_07_425794	336	2	21	21	CD
10_1101-2021_01_07_425794	336	3	]	]	-RRB-
10_1101-2021_01_07_425794	336	4	Charity	Charity	NNP
10_1101-2021_01_07_425794	336	5	W	W	NNP
10_1101-2021_01_07_425794	336	6	Law	Law	NNP
10_1101-2021_01_07_425794	336	7	,	,	,
10_1101-2021_01_07_425794	336	8	Yunshun	Yunshun	NNP
10_1101-2021_01_07_425794	336	9	Chen	Chen	NNP
10_1101-2021_01_07_425794	336	10	,	,	,
10_1101-2021_01_07_425794	336	11	Wei	Wei	NNP
10_1101-2021_01_07_425794	336	12	Shi	Shi	NNP
10_1101-2021_01_07_425794	336	13	,	,	,
10_1101-2021_01_07_425794	336	14	and	and	CC
10_1101-2021_01_07_425794	336	15	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	336	16	K	K	NNP
10_1101-2021_01_07_425794	336	17	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	336	18	.	.	.
10_1101-2021_01_07_425794	337	1	voom	voom	NNP
10_1101-2021_01_07_425794	337	2	:	:	:
10_1101-2021_01_07_425794	337	3	Precision	precision	NN
10_1101-2021_01_07_425794	337	4	weights	weight	NNS
10_1101-2021_01_07_425794	337	5	unlock	unlock	VBP
10_1101-2021_01_07_425794	337	6	linear	linear	JJ
10_1101-2021_01_07_425794	337	7	model	model	NN
10_1101-2021_01_07_425794	337	8	analysis	analysis	NN
10_1101-2021_01_07_425794	337	9	tools	tool	NNS
10_1101-2021_01_07_425794	337	10	for	for	IN
10_1101-2021_01_07_425794	337	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	337	12	-	-	HYPH
10_1101-2021_01_07_425794	337	13	seq	seq	NN
10_1101-2021_01_07_425794	337	14	read	read	VB
10_1101-2021_01_07_425794	337	15	counts	count	NNS
10_1101-2021_01_07_425794	337	16	.	.	.
10_1101-2021_01_07_425794	338	1	Genome	Genome	NNP
10_1101-2021_01_07_425794	338	2	Biology	Biology	NNP
10_1101-2021_01_07_425794	338	3	,	,	,
10_1101-2021_01_07_425794	338	4	15(2):R29	15(2):r29	CD
10_1101-2021_01_07_425794	338	5	,	,	,
10_1101-2021_01_07_425794	338	6	2014	2014	CD
10_1101-2021_01_07_425794	338	7	.	.	.
10_1101-2021_01_07_425794	339	1	[	[	-LRB-
10_1101-2021_01_07_425794	339	2	22	22	CD
10_1101-2021_01_07_425794	339	3	]	]	-RRB-
10_1101-2021_01_07_425794	339	4	Ali	Ali	NNP
10_1101-2021_01_07_425794	339	5	Mortazavi	Mortazavi	NNP
10_1101-2021_01_07_425794	339	6	,	,	,
10_1101-2021_01_07_425794	339	7	Brian	Brian	NNP
10_1101-2021_01_07_425794	339	8	A	A	NNP
10_1101-2021_01_07_425794	339	9	Williams	Williams	NNP
10_1101-2021_01_07_425794	339	10	,	,	,
10_1101-2021_01_07_425794	339	11	Kenneth	Kenneth	NNP
10_1101-2021_01_07_425794	339	12	McCue	McCue	NNP
10_1101-2021_01_07_425794	339	13	,	,	,
10_1101-2021_01_07_425794	339	14	Lorian	Lorian	NNP
10_1101-2021_01_07_425794	339	15	Schaeffer	Schaeffer	NNP
10_1101-2021_01_07_425794	339	16	,	,	,
10_1101-2021_01_07_425794	339	17	and	and	CC
10_1101-2021_01_07_425794	339	18	Barbara	Barbara	NNP
10_1101-2021_01_07_425794	339	19	Wold	Wold	NNP
10_1101-2021_01_07_425794	339	20	.	.	.
10_1101-2021_01_07_425794	340	1	Mapping	mapping	NN
10_1101-2021_01_07_425794	340	2	and	and	CC
10_1101-2021_01_07_425794	340	3	quantifying	quantify	VBG
10_1101-2021_01_07_425794	340	4	mammalian	mammalian	JJ
10_1101-2021_01_07_425794	340	5	transcriptomes	transcriptome	NNS
10_1101-2021_01_07_425794	340	6	by	by	IN
10_1101-2021_01_07_425794	340	7	RNA	RNA	NNP
10_1101-2021_01_07_425794	340	8	-	-	HYPH
10_1101-2021_01_07_425794	340	9	Seq	Seq	NNP
10_1101-2021_01_07_425794	340	10	.	.	.
10_1101-2021_01_07_425794	341	1	Nat	Nat	NNP
10_1101-2021_01_07_425794	341	2	Methods	Methods	NNP
10_1101-2021_01_07_425794	341	3	,	,	,
10_1101-2021_01_07_425794	341	4	5(7):621–8	5(7):621–8	NNP
10_1101-2021_01_07_425794	341	5	,	,	,
10_1101-2021_01_07_425794	341	6	2008	2008	CD
10_1101-2021_01_07_425794	341	7	.	.	.
10_1101-2021_01_07_425794	342	1	[	[	-LRB-
10_1101-2021_01_07_425794	342	2	23	23	CD
10_1101-2021_01_07_425794	342	3	]	]	-RRB-
10_1101-2021_01_07_425794	342	4	Benjamin	Benjamin	NNP
10_1101-2021_01_07_425794	342	5	M	M	NNP
10_1101-2021_01_07_425794	342	6	Bolstad	Bolstad	NNP
10_1101-2021_01_07_425794	342	7	,	,	,
10_1101-2021_01_07_425794	342	8	Rafael	Rafael	NNP
10_1101-2021_01_07_425794	342	9	A	A	NNP
10_1101-2021_01_07_425794	342	10	Irizarry	Irizarry	NNP
10_1101-2021_01_07_425794	342	11	,	,	,
10_1101-2021_01_07_425794	342	12	Magnus	Magnus	NNP
10_1101-2021_01_07_425794	342	13	Åstrand	Åstrand	NNP
10_1101-2021_01_07_425794	342	14	,	,	,
10_1101-2021_01_07_425794	342	15	and	and	CC
10_1101-2021_01_07_425794	342	16	Terence	Terence	NNP
10_1101-2021_01_07_425794	342	17	P.	P.	NNP
10_1101-2021_01_07_425794	342	18	Speed	Speed	NNP
10_1101-2021_01_07_425794	342	19	.	.	.
10_1101-2021_01_07_425794	343	1	A	a	DT
10_1101-2021_01_07_425794	343	2	comparison	comparison	NN
10_1101-2021_01_07_425794	343	3	of	of	IN
10_1101-2021_01_07_425794	343	4	normalization	normalization	NN
10_1101-2021_01_07_425794	343	5	methods	method	NNS
10_1101-2021_01_07_425794	343	6	for	for	IN
10_1101-2021_01_07_425794	343	7	high	high	JJ
10_1101-2021_01_07_425794	343	8	density	density	NN
10_1101-2021_01_07_425794	343	9	oligonucleotide	oligonucleotide	IN
10_1101-2021_01_07_425794	343	10	array	array	NNP
10_1101-2021_01_07_425794	343	11	data	datum	NNS
10_1101-2021_01_07_425794	343	12	based	base	VBN
10_1101-2021_01_07_425794	343	13	on	on	IN
10_1101-2021_01_07_425794	343	14	variance	variance	NN
10_1101-2021_01_07_425794	343	15	and	and	CC
10_1101-2021_01_07_425794	343	16	bias	bias	NN
10_1101-2021_01_07_425794	343	17	.	.	.
10_1101-2021_01_07_425794	344	1	Bioinformatics	bioinformatic	NNS
10_1101-2021_01_07_425794	344	2	,	,	,
10_1101-2021_01_07_425794	344	3	19(2):185–193	19(2):185–193	CD
10_1101-2021_01_07_425794	344	4	,	,	,
10_1101-2021_01_07_425794	344	5	2003	2003	CD
10_1101-2021_01_07_425794	344	6	.	.	.
10_1101-2021_01_07_425794	345	1	[	[	-LRB-
10_1101-2021_01_07_425794	345	2	24	24	CD
10_1101-2021_01_07_425794	345	3	]	]	-RRB-
10_1101-2021_01_07_425794	345	4	Mark	Mark	NNP
10_1101-2021_01_07_425794	345	5	D	D	NNP
10_1101-2021_01_07_425794	345	6	Robinson	Robinson	NNP
10_1101-2021_01_07_425794	345	7	and	and	CC
10_1101-2021_01_07_425794	345	8	Alicia	Alicia	NNP
10_1101-2021_01_07_425794	345	9	Oshlack	Oshlack	NNP
10_1101-2021_01_07_425794	345	10	.	.	.
10_1101-2021_01_07_425794	346	1	A	a	DT
10_1101-2021_01_07_425794	346	2	scaling	scale	VBG
10_1101-2021_01_07_425794	346	3	normalization	normalization	NN
10_1101-2021_01_07_425794	346	4	method	method	NN
10_1101-2021_01_07_425794	346	5	for	for	IN
10_1101-2021_01_07_425794	346	6	differen-	differen-	NNP
10_1101-2021_01_07_425794	346	7	tial	tial	JJ
10_1101-2021_01_07_425794	346	8	expression	expression	NN
10_1101-2021_01_07_425794	346	9	analysis	analysis	NN
10_1101-2021_01_07_425794	346	10	of	of	IN
10_1101-2021_01_07_425794	346	11	RNA	RNA	NNP
10_1101-2021_01_07_425794	346	12	-	-	HYPH
10_1101-2021_01_07_425794	346	13	seq	seq	NN
10_1101-2021_01_07_425794	346	14	data	datum	NNS
10_1101-2021_01_07_425794	346	15	.	.	.
10_1101-2021_01_07_425794	347	1	Genome	Genome	NNP
10_1101-2021_01_07_425794	347	2	Biology	Biology	NNP
10_1101-2021_01_07_425794	347	3	,	,	,
10_1101-2021_01_07_425794	347	4	11(3):R25	11(3):r25	CD
10_1101-2021_01_07_425794	347	5	,	,	,
10_1101-2021_01_07_425794	347	6	2010	2010	CD
10_1101-2021_01_07_425794	347	7	.	.	.
10_1101-2021_01_07_425794	348	1	[	[	-LRB-
10_1101-2021_01_07_425794	348	2	25	25	CD
10_1101-2021_01_07_425794	348	3	]	]	-RRB-
10_1101-2021_01_07_425794	348	4	Mark	Mark	NNP
10_1101-2021_01_07_425794	348	5	D	D	NNP
10_1101-2021_01_07_425794	348	6	Robinson	Robinson	NNP
10_1101-2021_01_07_425794	348	7	,	,	,
10_1101-2021_01_07_425794	348	8	Davis	Davis	NNP
10_1101-2021_01_07_425794	348	9	J	J	NNP
10_1101-2021_01_07_425794	348	10	McCarthy	McCarthy	NNP
10_1101-2021_01_07_425794	348	11	,	,	,
10_1101-2021_01_07_425794	348	12	and	and	CC
10_1101-2021_01_07_425794	348	13	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	348	14	K	K	NNP
10_1101-2021_01_07_425794	348	15	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	348	16	.	.	.
10_1101-2021_01_07_425794	349	1	edgeR	edgeR	NNP
10_1101-2021_01_07_425794	349	2	:	:	:
10_1101-2021_01_07_425794	349	3	a	a	DT
10_1101-2021_01_07_425794	349	4	Biocon-	Biocon-	NNP
10_1101-2021_01_07_425794	349	5	ductor	ductor	NN
10_1101-2021_01_07_425794	349	6	package	package	NN
10_1101-2021_01_07_425794	349	7	for	for	IN
10_1101-2021_01_07_425794	349	8	differential	differential	NN
10_1101-2021_01_07_425794	349	9	expression	expression	NN
10_1101-2021_01_07_425794	349	10	analysis	analysis	NN
10_1101-2021_01_07_425794	349	11	of	of	IN
10_1101-2021_01_07_425794	349	12	digital	digital	NNP
10_1101-2021_01_07_425794	349	13	gene	gene	NN
10_1101-2021_01_07_425794	349	14	expression	expression	NNP
10_1101-2021_01_07_425794	349	15	data	datum	NNS
10_1101-2021_01_07_425794	349	16	.	.	.
10_1101-2021_01_07_425794	350	1	Bioinformatics	bioinformatic	NNS
10_1101-2021_01_07_425794	350	2	,	,	,
10_1101-2021_01_07_425794	350	3	26(1):139–40	26(1):139–40	CD
10_1101-2021_01_07_425794	350	4	,	,	,
10_1101-2021_01_07_425794	350	5	2010	2010	CD
10_1101-2021_01_07_425794	350	6	.	.	.
10_1101-2021_01_07_425794	351	1	[	[	-LRB-
10_1101-2021_01_07_425794	351	2	26	26	CD
10_1101-2021_01_07_425794	351	3	]	]	-RRB-
10_1101-2021_01_07_425794	351	4	Wei	Wei	NNP
10_1101-2021_01_07_425794	351	5	Shi	Shi	NNP
10_1101-2021_01_07_425794	351	6	,	,	,
10_1101-2021_01_07_425794	351	7	Alicia	Alicia	NNP
10_1101-2021_01_07_425794	351	8	Oshlack	Oshlack	NNP
10_1101-2021_01_07_425794	351	9	,	,	,
10_1101-2021_01_07_425794	351	10	and	and	CC
10_1101-2021_01_07_425794	351	11	Gordon	Gordon	NNP
10_1101-2021_01_07_425794	351	12	K	K	NNP
10_1101-2021_01_07_425794	351	13	Smyth	Smyth	NNP
10_1101-2021_01_07_425794	351	14	.	.	.
10_1101-2021_01_07_425794	352	1	Optimizing	optimize	VBG
10_1101-2021_01_07_425794	352	2	the	the	DT
10_1101-2021_01_07_425794	352	3	noise	noise	NN
10_1101-2021_01_07_425794	352	4	versus	versus	IN
10_1101-2021_01_07_425794	352	5	bias	bias	NNP
10_1101-2021_01_07_425794	352	6	trade	trade	NN
10_1101-2021_01_07_425794	352	7	-	-	HYPH
10_1101-2021_01_07_425794	352	8	off	off	NN
10_1101-2021_01_07_425794	352	9	for	for	IN
10_1101-2021_01_07_425794	352	10	Illumina	Illumina	NNP
10_1101-2021_01_07_425794	352	11	whole	whole	JJ
10_1101-2021_01_07_425794	352	12	genome	genome	JJ
10_1101-2021_01_07_425794	352	13	expression	expression	NN
10_1101-2021_01_07_425794	352	14	BeadChips	BeadChips	NNP
10_1101-2021_01_07_425794	352	15	.	.	.
10_1101-2021_01_07_425794	353	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	353	2	Acids	Acids	NNP
10_1101-2021_01_07_425794	353	3	Research	Research	NNP
10_1101-2021_01_07_425794	353	4	,	,	,
10_1101-2021_01_07_425794	353	5	38(22):e204	38(22):e204	NNP
10_1101-2021_01_07_425794	353	6	,	,	,
10_1101-2021_01_07_425794	353	7	2010	2010	CD
10_1101-2021_01_07_425794	353	8	.	.	.
10_1101-2021_01_07_425794	354	1	[	[	-LRB-
10_1101-2021_01_07_425794	354	2	27	27	CD
10_1101-2021_01_07_425794	354	3	]	]	-RRB-
10_1101-2021_01_07_425794	354	4	Kim	Kim	NNP
10_1101-2021_01_07_425794	354	5	D	D	NNP
10_1101-2021_01_07_425794	354	6	Pruitt	Pruitt	NNP
10_1101-2021_01_07_425794	354	7	,	,	,
10_1101-2021_01_07_425794	354	8	Garth	Garth	NNP
10_1101-2021_01_07_425794	354	9	R	R	NNP
10_1101-2021_01_07_425794	354	10	Brown	Brown	NNP
10_1101-2021_01_07_425794	354	11	,	,	,
10_1101-2021_01_07_425794	354	12	Susan	Susan	NNP
10_1101-2021_01_07_425794	354	13	M	M	NNP
10_1101-2021_01_07_425794	354	14	Hiatt	Hiatt	NNP
10_1101-2021_01_07_425794	354	15	,	,	,
10_1101-2021_01_07_425794	354	16	Françoise	françoise	CD
10_1101-2021_01_07_425794	354	17	Thibaud	Thibaud	NNP
10_1101-2021_01_07_425794	354	18	-	-	HYPH
10_1101-2021_01_07_425794	354	19	Nissen	Nissen	NNP
10_1101-2021_01_07_425794	354	20	,	,	,
10_1101-2021_01_07_425794	354	21	Alexander	Alexander	NNP
10_1101-2021_01_07_425794	354	22	Astashyn	Astashyn	NNP
10_1101-2021_01_07_425794	354	23	,	,	,
10_1101-2021_01_07_425794	354	24	Olga	Olga	NNP
10_1101-2021_01_07_425794	354	25	Ermolaeva	Ermolaeva	NNP
10_1101-2021_01_07_425794	354	26	,	,	,
10_1101-2021_01_07_425794	354	27	Catherine	Catherine	NNP
10_1101-2021_01_07_425794	354	28	M	M	NNP
10_1101-2021_01_07_425794	354	29	Farrell	Farrell	NNP
10_1101-2021_01_07_425794	354	30	,	,	,
10_1101-2021_01_07_425794	354	31	Jennifer	Jennifer	NNP
10_1101-2021_01_07_425794	354	32	Hart	Hart	NNP
10_1101-2021_01_07_425794	354	33	,	,	,
10_1101-2021_01_07_425794	354	34	Melissa	Melissa	NNP
10_1101-2021_01_07_425794	354	35	J	J	NNP
10_1101-2021_01_07_425794	354	36	Landrum	Landrum	NNP
10_1101-2021_01_07_425794	354	37	,	,	,
10_1101-2021_01_07_425794	354	38	23	23	CD
10_1101-2021_01_07_425794	354	39	.CC	.cc	SYM
10_1101-2021_01_07_425794	354	40	-	-	HYPH
10_1101-2021_01_07_425794	354	41	BY	by	IN
10_1101-2021_01_07_425794	354	42	-	-	HYPH
10_1101-2021_01_07_425794	354	43	NC	NC	NNP
10_1101-2021_01_07_425794	354	44	-	-	HYPH
10_1101-2021_01_07_425794	354	45	ND	ND	NNP
10_1101-2021_01_07_425794	354	46	4.0	4.0	CD
10_1101-2021_01_07_425794	354	47	International	international	JJ
10_1101-2021_01_07_425794	354	48	licensemade	licensemade	NN
10_1101-2021_01_07_425794	354	49	available	available	JJ
10_1101-2021_01_07_425794	354	50	under	under	IN
10_1101-2021_01_07_425794	354	51	a	a	DT
10_1101-2021_01_07_425794	354	52	(	(	-LRB-
10_1101-2021_01_07_425794	354	53	which	which	WDT
10_1101-2021_01_07_425794	354	54	was	be	VBD
10_1101-2021_01_07_425794	354	55	not	not	RB
10_1101-2021_01_07_425794	354	56	certified	certify	VBN
10_1101-2021_01_07_425794	354	57	by	by	IN
10_1101-2021_01_07_425794	354	58	peer	peer	NN
10_1101-2021_01_07_425794	354	59	review	review	NN
10_1101-2021_01_07_425794	354	60	)	)	-RRB-
10_1101-2021_01_07_425794	354	61	is	be	VBZ
10_1101-2021_01_07_425794	354	62	the	the	DT
10_1101-2021_01_07_425794	354	63	author	author	NN
10_1101-2021_01_07_425794	354	64	/	/	SYM
10_1101-2021_01_07_425794	354	65	funder	funder	NN
10_1101-2021_01_07_425794	354	66	,	,	,
10_1101-2021_01_07_425794	354	67	who	who	WP
10_1101-2021_01_07_425794	354	68	has	have	VBZ
10_1101-2021_01_07_425794	354	69	granted	grant	VBN
10_1101-2021_01_07_425794	354	70	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	354	71	a	a	DT
10_1101-2021_01_07_425794	354	72	license	license	NN
10_1101-2021_01_07_425794	354	73	to	to	TO
10_1101-2021_01_07_425794	354	74	display	display	VB
10_1101-2021_01_07_425794	354	75	the	the	DT
10_1101-2021_01_07_425794	354	76	preprint	preprint	NN
10_1101-2021_01_07_425794	354	77	in	in	IN
10_1101-2021_01_07_425794	354	78	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	354	79	.	.	.
10_1101-2021_01_07_425794	355	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	355	2	is	be	VBZ
10_1101-2021_01_07_425794	355	3	The	the	DT
10_1101-2021_01_07_425794	355	4	copyright	copyright	NN
10_1101-2021_01_07_425794	355	5	holder	holder	NN
10_1101-2021_01_07_425794	355	6	for	for	IN
10_1101-2021_01_07_425794	355	7	this	this	DT
10_1101-2021_01_07_425794	355	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	355	9	version	version	NN
10_1101-2021_01_07_425794	355	10	posted	post	VBD
10_1101-2021_01_07_425794	355	11	January	January	NNP
10_1101-2021_01_07_425794	355	12	8	8	CD
10_1101-2021_01_07_425794	355	13	,	,	,
10_1101-2021_01_07_425794	355	14	2021	2021	CD
10_1101-2021_01_07_425794	355	15	.	.	.
10_1101-2021_01_07_425794	355	16	;	;	:
10_1101-2021_01_07_425794	355	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	355	18	:	:	:
10_1101-2021_01_07_425794	355	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	355	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	355	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	355	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN
10_1101-2021_01_07_425794	355	23	Kelly	Kelly	NNP
10_1101-2021_01_07_425794	355	24	M	M	NNP
10_1101-2021_01_07_425794	355	25	McGarvey	McGarvey	NNP
10_1101-2021_01_07_425794	355	26	,	,	,
10_1101-2021_01_07_425794	355	27	et	et	NNP
10_1101-2021_01_07_425794	355	28	al	al	NNP
10_1101-2021_01_07_425794	355	29	.	.	.
10_1101-2021_01_07_425794	356	1	RefSeq	refseq	NN
10_1101-2021_01_07_425794	356	2	:	:	:
10_1101-2021_01_07_425794	356	3	an	an	DT
10_1101-2021_01_07_425794	356	4	update	update	NN
10_1101-2021_01_07_425794	356	5	on	on	IN
10_1101-2021_01_07_425794	356	6	mammalian	mammalian	JJ
10_1101-2021_01_07_425794	356	7	reference	reference	NN
10_1101-2021_01_07_425794	356	8	sequences	sequence	NNS
10_1101-2021_01_07_425794	356	9	.	.	.
10_1101-2021_01_07_425794	357	1	Nucleic	Nucleic	NNP
10_1101-2021_01_07_425794	357	2	Acids	Acids	NNP
10_1101-2021_01_07_425794	357	3	Research	Research	NNP
10_1101-2021_01_07_425794	357	4	,	,	,
10_1101-2021_01_07_425794	357	5	42(Database	42(database	CD
10_1101-2021_01_07_425794	357	6	issue):D756–D763	issue):d756–d763	UH
10_1101-2021_01_07_425794	357	7	,	,	,
10_1101-2021_01_07_425794	357	8	2014	2014	CD
10_1101-2021_01_07_425794	357	9	.	.	.
10_1101-2021_01_07_425794	358	1	24	24	CD
10_1101-2021_01_07_425794	358	2	.CC	.CC	:
10_1101-2021_01_07_425794	358	3	-	-	HYPH
10_1101-2021_01_07_425794	358	4	BY	by	IN
10_1101-2021_01_07_425794	358	5	-	-	HYPH
10_1101-2021_01_07_425794	358	6	NC	NC	NNP
10_1101-2021_01_07_425794	358	7	-	-	HYPH
10_1101-2021_01_07_425794	358	8	ND	ND	NNP
10_1101-2021_01_07_425794	358	9	4.0	4.0	CD
10_1101-2021_01_07_425794	358	10	International	international	JJ
10_1101-2021_01_07_425794	358	11	licensemade	licensemade	NN
10_1101-2021_01_07_425794	358	12	available	available	JJ
10_1101-2021_01_07_425794	358	13	under	under	IN
10_1101-2021_01_07_425794	358	14	a	a	DT
10_1101-2021_01_07_425794	358	15	(	(	-LRB-
10_1101-2021_01_07_425794	358	16	which	which	WDT
10_1101-2021_01_07_425794	358	17	was	be	VBD
10_1101-2021_01_07_425794	358	18	not	not	RB
10_1101-2021_01_07_425794	358	19	certified	certify	VBN
10_1101-2021_01_07_425794	358	20	by	by	IN
10_1101-2021_01_07_425794	358	21	peer	peer	NN
10_1101-2021_01_07_425794	358	22	review	review	NN
10_1101-2021_01_07_425794	358	23	)	)	-RRB-
10_1101-2021_01_07_425794	358	24	is	be	VBZ
10_1101-2021_01_07_425794	358	25	the	the	DT
10_1101-2021_01_07_425794	358	26	author	author	NN
10_1101-2021_01_07_425794	358	27	/	/	SYM
10_1101-2021_01_07_425794	358	28	funder	funder	NN
10_1101-2021_01_07_425794	358	29	,	,	,
10_1101-2021_01_07_425794	358	30	who	who	WP
10_1101-2021_01_07_425794	358	31	has	have	VBZ
10_1101-2021_01_07_425794	358	32	granted	grant	VBN
10_1101-2021_01_07_425794	358	33	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	358	34	a	a	DT
10_1101-2021_01_07_425794	358	35	license	license	NN
10_1101-2021_01_07_425794	358	36	to	to	TO
10_1101-2021_01_07_425794	358	37	display	display	VB
10_1101-2021_01_07_425794	358	38	the	the	DT
10_1101-2021_01_07_425794	358	39	preprint	preprint	NN
10_1101-2021_01_07_425794	358	40	in	in	IN
10_1101-2021_01_07_425794	358	41	perpetuity	perpetuity	NN
10_1101-2021_01_07_425794	358	42	.	.	.
10_1101-2021_01_07_425794	359	1	It	-PRON-	PRP
10_1101-2021_01_07_425794	359	2	is	be	VBZ
10_1101-2021_01_07_425794	359	3	The	the	DT
10_1101-2021_01_07_425794	359	4	copyright	copyright	NN
10_1101-2021_01_07_425794	359	5	holder	holder	NN
10_1101-2021_01_07_425794	359	6	for	for	IN
10_1101-2021_01_07_425794	359	7	this	this	DT
10_1101-2021_01_07_425794	359	8	preprintthis	preprintthis	NN
10_1101-2021_01_07_425794	359	9	version	version	NN
10_1101-2021_01_07_425794	359	10	posted	post	VBD
10_1101-2021_01_07_425794	359	11	January	January	NNP
10_1101-2021_01_07_425794	359	12	8	8	CD
10_1101-2021_01_07_425794	359	13	,	,	,
10_1101-2021_01_07_425794	359	14	2021	2021	CD
10_1101-2021_01_07_425794	359	15	.	.	.
10_1101-2021_01_07_425794	359	16	;	;	:
10_1101-2021_01_07_425794	359	17	https://doi.org/10.1101/2021.01.07.425794doi	https://doi.org/10.1101/2021.01.07.425794doi	ADD
10_1101-2021_01_07_425794	359	18	:	:	:
10_1101-2021_01_07_425794	359	19	bioRxiv	biorxiv	IN
10_1101-2021_01_07_425794	359	20	preprint	preprint	JJ
10_1101-2021_01_07_425794	359	21	https://doi.org/10.1101/2021.01.07.425794	https://doi.org/10.1101/2021.01.07.425794	NN
10_1101-2021_01_07_425794	359	22	http://creativecommons.org/licenses/by-nc-nd/4.0/	http://creativecommons.org/licenses/by-nc-nd/4.0/	NN